Publications

3307 publications

DOI Crossref
Carbon’s Three-Center, Four-Electron Tetrel Bond, Treated Experimentally
Karim A, Schulz N, Andersson H, ..., Keller S, Erdélyi M
J. Am. Chem. Soc. - (-) - [2018-12-07; online 2018-12-07]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Crystal Structures and Cytotoxicity of ent-Kaurane-Type Diterpenoids from Two Aspilia Species
Yaouba S, Valkonen A, Coghi P, ..., Erdélyi M, Yenesew A
Molecules 23 (12) 3199 [2018-12-04; online 2018-12-04]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing
Onuț-Brännström I, Benjamin M, Scofield DG, ..., Lindström ES, Johannesson H
GENBANK
Sci Rep 8 (1) - [2018-12-00; online 2018-03-13]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
The shape of the ribosome exit tunnel affects cotranslational protein folding
Kudva R, Tian P, Pardo-Avila F, ..., Bernstein HD, von Heijne G
Elife 7 (-) - [2018-11-26; online 2018-11-26]
Cryo-EM [Service]
PubMed DOI Crossref
Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis
Falcão AM, van Bruggen D, Marques S, ..., Guerreiro-Cacais AO, Castelo-Branco G
GEO
Nat Med - (-) - [2018-11-12; online 2018-11-12]
Bioinformatics Long-term Support WABI [Service]
PubMed DOI Crossref
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Zivanov J, Nakane T, Forsberg BO, ..., Lindahl E, Scheres SH
Elife 7 (-) - [2018-11-09; online 2018-11-09]
Cryo-EM [Technology development]
PubMed DOI Crossref
XLSY: Extra-Large NMR Spectroscopy
Pustovalova Y, Mayzel M, Orekhov VY
Angew. Chem. Int. Ed. 57 (43) 14043-14045 [2018-10-22; online 2018-10-01]
Swedish NMR Centre (SNC) [Technology development]
DOI Crossref
Halogen Bond Asymmetry in Solution
Lindblad S, Mehmeti K, Veiga AX, ..., Gräfenstein J, Erdélyi M
J. Am. Chem. Soc. 140 (41) 13503-13513 [2018-10-17; online 2018-09-20]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
An orthotopic glioblastoma animal model suitable for high-throughput screenings
Pudelko L, Edwards S, Balan M, ..., Helleday T, Bräutigam L
- 20 (11) 1475-1484 [2018-10-09; online 2018-05-10]
Advanced Light Microscopy (ALM) [Collaborative]
PubMed DOI Crossref
Chorea, psychosis, acanthocytosis, and prolonged survival associated with
Paucar M, Pajak A, Freyer C, ..., Wredenberg A, Svenningsson P
pmc
Neurology 91 (15) 710-712 [2018-10-09; online 2018-09-14]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Enhanced validation of antibodies for research applications.
Edfors F, Hober A, Linderbäck K, ..., Forsström B, Uhlen M
pmc BioProject BioProject
Nat Commun 9 (1) 4130 [2018-10-08; online 2018-10-08]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Using Scipion for stream image processing at Cryo-EM facilities
Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, ..., Conesa P, Carazo JM
Journal of Structural Biology - (-) - [2018-10-00; online 2018-10-00]
Cryo-EM [Technology development]
PubMed DOI Crossref
Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.
Evangelou E, Warren HR, Mosen-Ansorena D, ..., Caulfield MJ, Million Veteran Program
Nat. Genet. 50 (10) 1412-1425 [2018-10-00; online 2018-09-17]
PubMed DOI Crossref
NMR Determination of the Binding Constant of Ionic Species: A Caveat
Schulz N, Schindler S, Huber SM, Erdelyi M
J. Org. Chem. 83 (18) 10881-10886 [2018-09-21; online 2018-08-15]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town.
Krzewińska M, Kjellström A, Günther T, ..., Storå J, Götherström A
Curr. Biol. 28 (17) 2730-2738.e10 [2018-09-10; online 2018-08-23]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Contribution of allelic imbalance to colorectal cancer.
Palin K, Pitkänen E, Turunen M, ..., Taipale J, Aaltonen LA
pmc
Nat Commun 9 (1) 3664 [2018-09-10; online 2018-09-10]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Inflammatory markers in women with postpartum depressive symptoms
Bränn E, Fransson E, White RA, ..., Sundström-Poromaa I, Skalkidou A
J Neuro Res - (-) - [2018-09-05; online 2018-09-05]
PLA Proteomics [Service]
PubMed DOI Crossref
A fine-needle aspiration-based protein signature discriminates benign from malignant breast lesions
Franzén B, Kamali-Moghaddam M, Alexeyenko A, ..., Landegren U, Lewensohn R
Mol Oncol 12 (9) 1415-1428 [2018-09-00; online 2018-08-09]
PLA Proteomics [Technology development]
PubMed DOI Crossref
Autoantibody profiling reveals four protein candidate autoantigens associated with systemic lupus erythematosus.
Frostegård J, Hellström C, Nilsson P, Frostegård AG, Ajeganova S
Lupus 27 (10) 1670-1678 [2018-09-00; online 2018-07-24]
Autoimmunity Profiling [Service]
PubMed DOI Crossref
The molecular genetic basis of herbivory between butterflies and their host plants.
Nallu S, Hill JA, Don K, ..., Wheat CW, Kronforst MR
pmc mid SRA
Nat Ecol Evol 2 (9) 1418-1427 [2018-09-00; online 2018-08-03]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Detection of autoantibodies against cancer-testis antigens in non-small cell lung cancer
Djureinovic D, Dodig-Crnkovic T, Hellström C, ..., Schwenk JM, Micke P
Lung Cancer - (-) - [2018-09-00; online 2018-09-00]
Autoimmunity Profiling [Service]
DOI Crossref
Ein Fall von Pankreaskarzinom
Löhr JM, Kordes M, Gustafsson-Liljefors M, ..., Permert J, Jäger D
Forum 33 (4) 232-235 [2018-09-00; online 2018-08-14]
Clinical Genomics Stockholm [Collaborative]
PubMed DOI Crossref
Patient-derived xenograft models reveal intratumor heterogeneity and temporal stability in neuroblastoma
Braekeveldt N, von Stedingk K, Fransson S, ..., Påhlman S, Bexell D
Cancer Res - (-) canres.0527.2018 [2018-08-28; online 2018-08-28]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Molecular Architecture of the Mouse Nervous System.
Zeisel A, Hochgerner H, Lönnerberg P, ..., Marklund U, Linnarsson S
pmc SRA
Cell 174 (4) 999-1014.e22 [2018-08-09; online 2018-08-11]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates.
Nilsson A, Skarp A, Johansson C, ..., Engstrand L, Rautelin H
pmc
Microbiologyopen 7 (4) e00583 [2018-08-00; online 2018-02-09]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
RNA velocity of single cells.
La Manno G, Soldatov R, Zeisel A, ..., Linnarsson S, Kharchenko PV
pmc mid
Nature 560 (7719) 494-498 [2018-08-00; online 2018-08-08]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Regulation of Neuronal Na,K-ATPase by Extracellular Scaffolding Proteins
Liebmann T, Fritz N, Kruusmägi M, ..., Aperia A, Brismar H
Int J Mol Sci 19 (8) 2214 [2018-07-29; online 2018-07-29]
Advanced Light Microscopy (ALM) [Service]
PubMed DOI Crossref
Autoantibody profiling in intraocular fluid of patients with uveitis.
Ten Berge JC, Schreurs MW, van Rosmalen J, Rothova A
Exp. Eye Res. 176 (-) 141-146 [2018-07-10; online 2018-07-10]
Autoimmunity Profiling [Service]
DOI Crossref
OLMα2 Cells Bidirectionally Modulate Learning
Siwani S, França ASC, Mikulovic S, ..., Tort ABL, Kullander K
Neuron 99 (2) 404-412.e3 [2018-07-00; online 2018-07-00]
Advanced Light Microscopy (ALM) [Collaborative]
PubMed DOI Crossref
appreci8: a pipeline for precise variant calling integrating 8 tools
Sandmann S, Karimi M, de Graaf AO, ..., Jansen JH, Dugas M
- - (-) - [2018-06-26; online 2018-06-26]
Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
In Vitro Evolution of Antibodies Inspired by In Vivo Evolution
Persson H, Kirik U, Thörnqvist L, ..., Levander F, Ohlin M
Front Immunol 9 (-) - [2018-06-21; online 2018-06-21]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
High similarity in the microbiota of cold-water sponges of the Genus
Cárdenas CA, González-Aravena M, Font A, ..., Malmberg M, Bongcam-Rudloff E
pmc
PeerJ 6 (-) e4935 [2018-06-07; online 2018-06-07]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Four evolutionary trajectories underlie genetic intratumoral variation in childhood cancer
Karlsson J, Valind A, Holmquist Mengelbier L, ..., Bexell D, Gisselsson D
Nat Genet 50 (7) 944-950 [2018-06-04; online 2018-06-04]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Paternally expressed imprinted genes associate with hybridization barriers in Capsella
Lafon-Placette C, Hatorangan MR, Steige KA, ..., Slotte T, Köhler C
GEO
NPLANTS 4 (6) 352-357 [2018-06-00; online 2018-05-28]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Liquid Norbornadiene Photoswitches for Solar Energy Storage
Dreos A, Wang Z, Udmark J, ..., Nielsen MB, Moth-Poulsen K
Adv. Energy Mater. 8 (18) 1703401 [2018-06-00; online 2018-03-25]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Combined BET bromodomain and CDK2 inhibition in MYC-driven medulloblastoma
Bolin S, Borgenvik A, Persson CU, ..., Weishaupt H, Swartling FJ
Oncogene 37 (21) 2850-2862 [2018-05-00; online 2018-03-07]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Molecular barcoding of viral vectors enables mapping and optimization of mRNAtrans-splicing
Davidsson M, Díaz-Fernández P, Torroba M, ..., Lundberg C, Björklund T
RNA 24 (5) 673-687 [2018-05-00; online 2018-01-31]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Wray NR, Ripke S, Mattheisen M, ..., Sullivan PF, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium
pmc mid
Nat. Genet. 50 (5) 668-681 [2018-05-00; online 2018-04-26]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Experimental validation of predicted cancer genes using FRET
Guala D, Bernhem K, Blal HA, ..., Brismar H, Sonnhammer ELL
Methods Appl. Fluoresc. 6 (3) 035007 [2018-04-25; online 2018-04-25]
Advanced Light Microscopy (ALM) [Collaborative]
PubMed DOI Crossref
Repeated evolution of self-compatibility for reproductive assurance.
Nieuwenhuis BPS, Tusso S, Bjerling P, ..., Wolf JBW, Immler S
pmc
Nat Commun 9 (1) 1639 [2018-04-24; online 2018-04-24]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Active and inactive β1 integrins segregate into distinct nanoclusters in focal adhesions
Spiess M, Hernandez-Varas P, Oddone A, ..., Lakadamyali M, Strömblad S
J. Cell Biol. - (-) jcb.201707075 [2018-04-09; online 2018-04-09]
Advanced Light Microscopy (ALM) [Collaborative]
PubMed DOI Crossref
Expression levels of long non-coding RNAs are prognostic for AML outcome.
Mer AS, Lindberg J, Nilsson C, ..., Lehmann S, Rantalainen M
pmc
J Hematol Oncol 11 (1) 52 [2018-04-07; online 2018-04-07]
Clinical Genomics Stockholm [Service]
DOI Crossref
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Boerema AP, Aibara S, Paul B, ..., Lindahl E, Amunts A
PDB
NPLANTS 4 (4) 212-217 [2018-04-00; online 2018-04-02]
Cryo-EM [Service]
PubMed DOI Crossref
Evaluation of the
Arkani S, Cao J, Lundin J, ..., Matsson H, Nordenskjöld A
pmc
Hum Genome Var 5 (-) 18009 [2018-03-29; online 2018-03-29]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Improved efficiency of in situ protein analysis by proximity ligation using UnFold probes.
Klaesson A, Grannas K, Ebai T, ..., Söderberg O, Landegren U
pmc
Sci Rep 8 (1) 5400 [2018-03-29; online 2018-03-29]
PLA Proteomics [Technology development]
PubMed DOI Crossref
Molecular mechanism of ATP versus GTP selectivity of adenylate kinase
Rogne P, Rosselin M, Grundström C, ..., Sauer UH, Wolf-Watz M
Proc Natl Acad Sci USA 115 (12) 3012-3017 [2018-03-20; online 2018-03-05]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
ILF2 and ILF3 are autoantigens in canine systemic autoimmune disease.
Bremer HD, Landegren N, Sjöberg R, ..., Kämpe O, Hansson-Hamlin H
pmc
Sci Rep 8 (1) 4852 [2018-03-19; online 2018-03-19]
Autoimmunity Profiling [Service]
PubMed DOI Crossref
Clinical Presentation of a Complex Neurodevelopmental Disorder Caused by Mutations in ADNP.
Van Dijck A, Vulto-van Silfhout AT, Cappuyns E, ..., Vandeweyer G, Kooy RF
pmc mid
Biol. Psychiatry - (-) - [2018-03-15; online 2018-03-15]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Ethylene-Related Gene Expression Networks in Wood Formation.
Seyfferth C, Wessels B, Jokipii-Lukkari S, ..., Felten J, Tuominen H
pmc
Front Plant Sci 9 (-) 272 [2018-03-14; online 2018-03-14]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Sexual dimorphism in the width of the mouse synaptonemal complex
Agostinho A, Kouznetsova A, Hernández-Hernández A, ..., Brismar H, Höög C
J Cell Sci 131 (5) jcs212548 [2018-03-01; online 2018-02-02]
Advanced Light Microscopy (ALM) [Collaborative]
PubMed DOI Crossref
Genetic variants influencing phenotypic variance heterogeneity.
Ek WE, Rask-Andersen M, Karlsson T, ..., Gyllensten U, Johansson Å
Hum. Mol. Genet. 27 (5) 799-810 [2018-03-01; online 2018-01-13]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Current applications of antibody microarrays.
Chen Z, Dodig-Crnković T, Schwenk JM, Tao SC
pmc
Clin Proteomics 15 (-) 7 [2018-02-28; online 2018-02-28]
Plasma Profiling [Collaborative]
PubMed DOI Crossref
In Situ Target Engagement Studies in Adherent Cells
Axelsson H, Almqvist H, Otrocka M, ..., Lundbäck T, Seashore-Ludlow B
ACS Chem. Biol. - (-) - [2018-02-21; online 2018-02-21]
Chemical Biology Consortium Sweden (CBCS) [Technology development]
PubMed DOI Crossref
Two novel colorectal cancer risk loci in the region on chromosome 9q22.32
Thutkawkorapin J, Mahdessian H, Barber T, ..., Jiao X, Lindblom A
Oncotarget 9 (13) - [2018-02-16; online 2018-01-30]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Dispersed Uniform Nanoparticles from a Macroscopic Organosilica Powder
Church TL, Bernin D, Garcia-Bennett AE, Hedin N
Langmuir 34 (6) 2274-2281 [2018-02-13; online 2018-02-05]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Kynurenic Acid and Gpr35 Regulate Adipose Tissue Energy Homeostasis and Inflammation.
Agudelo LZ, Ferreira DMS, Cervenka I, ..., Berggren P, Ruas JL
Cell Metab. 27 (2) 378-392.e5 [2018-02-06; online 2018-02-08]
Mass Cytometry [Collaborative]
PubMed DOI Crossref
Quantitative image analysis of protein expression and colocalisation in skin sections
Zhang H, Ericsson M, Virtanen M, ..., Vahlquist A, Törmä H
Exp Dermatol 27 (2) 196-199 [2018-02-00; online 2018-01-09]
BioImage Informatics [Service]
PubMed DOI Crossref
Paternal easiRNAs regulate parental genome dosage in Arabidopsis
Martinez G, Wolff P, Wang Z, ..., Slotkin RK, Köhler C
GEO
Nat Genet 50 (2) 193-198 [2018-02-00; online 2018-01-15]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Human NUDT22 Is a UDP-Glucose/Galactose Hydrolase Exhibiting a Unique Structural Fold
Carter M, Jemth AS, Carreras-Puigvert J, ..., Helleday T, Stenmark P
PDB PDB
Structure 26 (2) 295-303.e6 [2018-02-00; online 2018-02-00]
Protein Science Facility (PSF) [Service]
PubMed DOI Crossref
Red meat intake in chronic kidney disease patients: Two sides of the coin
Mafra D, Borges NA, Cardozo LFMdF, ..., Lindholm B, Stenvinkel P
Nutrition 46 (-) 26-32 [2018-02-00; online 2018-02-00]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
The Folding Pathway of an Ig Domain is Conserved On and Off the Ribosome
Tian P, Steward A, Kudva R, ..., Clarke J, Best R
- - (-) - [2018-01-24; online 2018-01-24]
Cryo-EM [Service]
PubMed DOI Crossref
Genetical genomics of growth in a chicken model.
Johnsson M, Henriksen R, Höglund A, ..., Jensen P, Wright D
pmc
BMC Genomics 19 (1) 72 [2018-01-23; online 2018-01-23]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Rapid hybrid speciation in Darwin’s finches
Lamichhaney S, Han F, Webster MT, ..., Grant BR, Grant PR
SRA
Science 359 (6372) 224-228 [2018-01-12; online 2017-11-23]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Discovering viral genomes in human metagenomic data by predicting unknown protein families.
Barrientos-Somarribas M, Messina DN, Pou C, ..., Andersson B, Sonnhammer ELL
pmc
Sci Rep 8 (1) 28 [2018-01-08; online 2018-01-08]
NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Evaluating vacquinol-1 in rats carrying glioblastoma models RG2 and NS1
Ahlstedt J, Förnvik K, Zolfaghari S, ..., Salford LG, Redebrandt HN
Oncotarget - (-) - [2018-01-03; online 2018-01-03]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Differential impact of RB status on E2F1 reprogramming in human cancer.
McNair C, Xu K, Mandigo AC, ..., Brown M, Knudsen KE
pmc
J. Clin. Invest. 128 (1) 341-358 [2018-01-02; online 2017-12-04]
Clinical Genomics Stockholm [Service]
DOI Crossref
Surface treatment of cellulose nanocrystals (CNC): effects on dispersion rheology
Sahlin K, Forsgren L, Moberg T, ..., Rigdahl M, Westman G
Cellulose 25 (1) 331-345 [2018-01-00; online 2017-11-28]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Whole Slide Image Registration for the Study of Tumor Heterogeneity
Solorzano L, Almeida GM, Mesquita B, ..., Oliveira C, Wählby C
- - (-) 95-102 [2018-00-00; online 2018-09-14]
BioImage Informatics [Technology development]
DOI Crossref
Optimising methods for the recovery and quantification of di- and tripeptides in soil
J�mtg�rd S, Robinson N, Moritz T, Colgrave ML, Schmidt S
Soil Res. - (-) - [2018-00-00; online 2018-00-00]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
The Interaction Modes of Haloimidazolium Salts in Solution
Schulz N, Sokkar P, Engelage E, ..., Sanchez-Garcia E, Huber SM
Chem. Eur. J. - (-) - [2017-12-28; online 2017-12-28]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Gene expression and risk of leukemic transformation in myelodysplasia
Shiozawa Y, Malcovati L, Gallì A, ..., Cazzola M, Ogawa S
Blood 130 (24) 2642-2653 [2017-12-14; online 2017-11-02]
Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
NMR study of Rcf2 reveals an unusual dimeric topology in detergent micelles
Zhou S, Pettersson P, Brzezinski P, Ädelroth P, Mäler L
ChemBioChem - (-) - [2017-12-14; online 2017-12-14]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
CELSR2 is a candidate susceptibility gene in idiopathic scoliosis
Einarsdottir E, Grauers A, Wang J, ..., Kere J, Gerdhem P
PLoS ONE 12 (12) e0189591 [2017-12-14; online 2017-12-14]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Genomic and phenotypic characteristics of Swedish C. jejuni water isolates.
Nilsson A, Johansson C, Skarp A, ..., Engstrand L, Rautelin H
pmc
PLoS ONE 12 (12) e0189222 [2017-12-07; online 2017-12-07]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Microbial mineralization of cellulose in frozen soils
Segura JH, Nilsson MB, Haei M, ..., Schleucher J, Öquist MG
Nat Commun 8 (1) - [2017-12-00; online 2017-10-27]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1
Lehmann LC, Hewitt G, Aibara S, ..., Boulton SJ, Deindl S
Molecular Cell 68 (5) 847-859.e7 [2017-12-00; online 2017-12-00]
Cryo-EM [Service] Protein Science Facility (PSF) [Service]
PubMed DOI Crossref
Lipid Driven Nanodomains in Giant Lipid Vesicles are Fluid and Disordered
Koukalová A, Amaro M, Aydogan G, ..., Hof M, Šachl R
Sci Rep 7 (1) - [2017-12-00; online 2017-07-14]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Flow Cytometric Measurement of Blood Cells with BCR-ABL1 Fusion Protein in Chronic Myeloid Leukemia
Löf L, Arngården L, Olsson-Strömberg U, ..., Landegren U, Kamali-Moghaddam M
Sci Rep 7 (1) - [2017-12-00; online 2017-04-04]
PLA Proteomics [Technology development]
PubMed DOI Crossref
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Matzov D, Aibara S, Basu A, ..., Amunts A, Yonath AE
PDB PDB
Nat Commun 8 (1) - [2017-12-00; online 2017-09-28]
Cryo-EM [Service]
PubMed DOI Crossref
Increasing the permeability of Escherichia coli using MAC13243
Muheim C, Götzke H, Eriksson AU, ..., Nørholm MHH, Daley DO
Sci Rep 7 (1) - [2017-12-00; online 2017-12-15]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Identification of NCAN as a candidate gene for developmental dyslexia
Einarsdottir E, Peyrard-Janvid M, Darki F, ..., Leinonen E, Kere J
Sci Rep 7 (1) - [2017-12-00; online 2017-08-24]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Automated Training of Deep Convolutional Neural Networks for Cell Segmentation
Sadanandan SK, Ranefall P, Le Guyader S, Wählby C
Sci Rep 7 (1) - [2017-12-00; online 2017-08-10]
BioImage Informatics [Technology development]
PubMed DOI Crossref
Mapping of leptin and its syntenic genes to chicken chromosome 1p
Seroussi E, Pitel F, Leroux S, ..., Anderson L, Friedman-Einat M
BioProject
BMC Genet. 18 (1) - [2017-12-00; online 2017-08-09]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
The dynamic dimer structure of the chaperone Trigger Factor
Morgado L, Burmann BM, Sharpe T, Mazur A, Hiller S
Nat Commun 8 (1) - [2017-12-00; online 2017-12-08]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
A short feature vector for image matching: The Log-Polar Magnitude feature descriptor
Matuszewski DJ, Hast A, Wählby C, Sintorn IM
PLoS ONE 12 (11) e0188496 [2017-11-30; online 2017-11-30]
BioImage Informatics [Technology development]
DOI Crossref
Cancer risk susceptibility loci in a Swedish population
Liu W, Jiao X, Thutkawkorapin J, Mahdessian H, Lindblom A
Oncotarget - (-) - [2017-11-25; online 2017-11-25]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans
Scott RA, Scott LJ, Mägi R, ..., McCarthy MI, Prokopenko I
Diabetes 66 (11) 2888-2902 [2017-11-00; online 2017-05-31]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Crystal structures of OrfX2 and P47 from a Botulinum neurotoxin OrfX type gene cluster.
Gustafsson R, Berntsson RP, Martínez-Carranza M, ..., Johnson EA, Stenmark P
FEBS Lett. - (-) - [2017-10-25; online 2017-10-25]
Protein Science Facility (PSF) [Service]
PubMed DOI Crossref
Glioblastoma and glioblastoma stem cells are dependent on functional MTH1
Pudelko L, Rouhi P, Sanjiv K, ..., Helleday T, Bräutigam L
Oncotarget 8 (49) - [2017-10-17; online 2017-07-20]
Advanced Light Microscopy (ALM) [Collaborative]
PubMed DOI Crossref
Targeted proteomic analysis of habitual coffee consumption.
Cornelis MC, Gustafsson S, Ärnlöv J, ..., Lind L, Ingelsson E
J. Intern. Med. - (-) - [2017-10-16; online 2017-10-16]
Clinical Biomarkers [Service]
PubMed DOI Crossref
Chemical Proteomics for Target Discovery of Head-to-Tail Cyclized Mini-Proteins
Hellinger R, Thell K, Vasileva M, ..., Becker CW, Gruber CW
Front. Chem. 5 (-) - [2017-10-11; online 2017-10-11]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
A MIR4646 associated methylation locus is hypomethylated in adolescent depression.
Boström AE, Ciuculete DM, Attwood M, ..., Mwinyi J, Schiöth HB
J Affect Disord 220 (-) 117-128 [2017-10-01; online 2017-05-17]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Tumor Necrosis Factor Receptor 1 and 2 Are Associated With Risk of Intracerebral Hemorrhage.
Svensson EH, Söderholm M, Abul-Kasim K, Engström G
Stroke 48 (10) 2710-2715 [2017-10-00; online 2017-08-22]
Clinical Biomarkers [Service]
PubMed DOI Crossref
Breast cancer in young women and prognosis: How important are proliferation markers?
Fredholm H, Magnusson K, Lindström LS, ..., Frisell J, Fredriksson I
Eur. J. Cancer 84 (-) 278-289 [2017-10-00; online 2017-08-29]
Tissue Profiling [Collaborative]
PubMed DOI Crossref
Eosinophil Cationic Protein, Carotid Plaque, and Incidence of Stroke.
Sundström J, Söderholm M, Borné Y, ..., Orho-Melander M, Engström G
Stroke 48 (10) 2686-2692 [2017-10-00; online 2017-09-13]
Clinical Biomarkers [Service]
PubMed DOI Crossref
Comprehensive analysis of NMR data using advanced line shape fitting
Niklasson M, Otten R, Ahlner A, ..., Petzold K, Lundström P
J Biomol NMR 69 (2) 93-99 [2017-10-00; online 2017-10-17]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
The evolutionary history of the DMRT3 ‘Gait keeper ’ haplotype
Staiger EA, Almén MS, Promerová M, ..., Rubin CJ, Andersson L
Anim Genet 48 (5) 551-559 [2017-10-00; online 2017-07-25]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Plasma stem cell factor levels are associated with risk of cardiovascular disease and death
Björkbacka H, Yao Mattisson I, Wigren M, ..., Engström G, Nilsson J
J Intern Med - (-) - [2017-09-21; online 2017-09-21]
Clinical Biomarkers [Service]
DOI Crossref
Structures of the human mitochondrial ribosome in native states of assembly
Brown A, Rathore S, Kimanius D, ..., Amunts A, Ramakrishnan V
PDB PDB
Nat Struct Mol Biol - (-) - [2017-09-11; online 2017-09-11]
Cryo-EM [Service]
DOI Crossref
The U2AF1S34F mutation induces lineage-specific splicing alterations in myelodysplastic syndromes
Yip BH, Steeples V, Repapi E, ..., Pellagatti A, Boultwood J
- 127 (9) 3557-3557 [2017-09-01; online 2017-09-01]
Clinical Genomics Uppsala [Service]
DOI Crossref
Metabolic profiles from two different breakfast meals characterized by 1 H NMR-based metabolomics
Rådjursöga M, Karlsson GB, Lindqvist HM, ..., Ellegård L, Winkvist A
Food Chem 231 (-) 267-274 [2017-09-00; online 2017-09-00]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Clonal Evolution of Autoreactive Germinal Centers.
Degn SE, van der Poel CE, Firl DJ, ..., Victora GD, Carroll MC
Cell 170 (5) 913-926.e19 [2017-08-24; online 2017-08-26]
Autoimmunity Profiling [Service]
PubMed DOI Crossref
SF3B1-initiating mutations in MDS-RSs target lymphomyeloid hematopoietic stem cells
Mortera-Blanco T, Dimitriou M, Woll PS, ..., Jacobsen SEW, Hellström-Lindberg E
Blood 130 (7) 881-890 [2017-08-17; online 2017-06-20]
Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
Mucin-Inspired Lubrication on Hydrophobic Surfaces
Käsdorf BT, Weber F, Petrou G, ..., Crouzier T, Lieleg O
Biomacromolecules 18 (8) 2454-2462 [2017-08-14; online 2017-07-03]
Protein Science Facility (PSF) [Service]
PubMed DOI Crossref
Use of Proteomics To Investigate Kidney Function Decline over 5 Years.
Carlsson AC, Ingelsson E, Sundström J, ..., Lind L, Ärnlöv J
pmc
Clin J Am Soc Nephrol 12 (8) 1226-1235 [2017-08-07; online 2017-07-21]
Clinical Biomarkers [Service]
DOI Crossref
Switchable ionic liquids enable efficient nanofibrillation of wood pulp
Berglund L, Anugwom I, Hedenström M, ..., Mikkola JP, Oksman K
Cellulose 24 (8) 3265-3279 [2017-08-00; online 2017-06-06]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Structural pathway of regulated substrate transfer and threading through an Hsp100 disaggregase
Deville C, Carroni M, Franke KB, ..., Mogk A, Saibil HR
PDB PDB
Sci Adv 3 (8) e1701726 [2017-08-00; online 2017-08-04]
Cryo-EM [Service]
PubMed DOI Crossref
Objective automated quantification of fluorescence signal in histological sections of rat lens
Talebizadeh N, Hagström NZ, Yu Z, ..., Söderberg P, Wählby C
Cytometry 91 (8) 815-821 [2017-08-00; online 2017-05-11]
BioImage Informatics [Collaborative]
DOI Crossref
The structure of the tetanus toxin reveals pH‐mediated domain dynamics
Masuyer G, Conrad J, Stenmark P
PDB PDB
EMBO Rep. 18 (8) 1306-1317 [2017-08-00; online 2017-06-23]
Cryo-EM [Service]
PubMed DOI Crossref
Solution NMR structure of the TRIM21 B-box2 and identification of residues involved in its interaction with the RING domain
Wallenhammar A, Anandapadamanaban M, Lemak A, ..., Wallner B, Sunnerhagen M
PDB
PLoS ONE 12 (7) e0181551 [2017-07-28; online 2017-07-28]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Isoflavones and Rotenoids from the Leaves of Millettia oblata ssp. teitensis
Deyou T, Marco M, Heydenreich M, ..., Yenesew A, Erdélyi M
J. Nat. Prod. 80 (7) 2060-2066 [2017-07-28; online 2017-06-30]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Continuous immunotypes describe human immune variation and predict diverse responses.
Kaczorowski KJ, Shekhar K, Nkulikiyimfura D, ..., Chakraborty AK, Brodin P
pmc
Proc. Natl. Acad. Sci. U.S.A. 114 (30) E6097-E6106 [2017-07-25; online 2017-07-10]
Mass Cytometry [Technology development]
PubMed DOI Crossref
Multipotent peripheral glial cells generate neuroendocrine cells of the adrenal medulla.
Furlan A, Dyachuk V, Kastriti ME, ..., Ernfors P, Adameyko I
Science 357 (6346) - [2017-07-07; online 2017-07-08]
Eukaryotic Single Cell Genomics (ESCG) [Service]
PubMed DOI Crossref
Detection of Extracellular Vesicles Using Proximity Ligation Assay with Flow Cytometry Readout-ExoPLA.
Löf L, Arngården L, Ebai T, ..., Söderberg O, Kamali-Moghaddam M
Curr Protoc Cytom 81 (-) 4.8.1-4.8.10 [2017-07-05; online 2017-07-05]
PLA Proteomics [Technology development]
PubMed DOI Crossref
Paternal personality and social status influence offspring activity in zebrafish.
Zajitschek S, Herbert-Read JE, Abbasi NM, Zajitschek F, Immler S
pmc
BMC Evol. Biol. 17 (1) 157 [2017-07-03; online 2017-07-03]
Genome Engineering Zebrafish [Service]