Publications

3835 publications

PubMed DOI Crossref
Comprehensive longitudinal study of epigenetic mutations in aging.
Wang Y, Karlsson R, Jylhävä J, ..., Almgren M, Hägg S
Clin Epigenetics 11 (1) 187 [2019-12-09; online 2019-12-09]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.
Nicholls TJ, Spåhr H, Jiang S, ..., Larsson NG, Gustafsson CM
Mol. Cell 76 (5) 784-796.e6 [2019-12-05; online 2019-10-03]
Protein Science Facility (PSF) [Service]
PubMed DOI Crossref
DNA methylation profiles in chronic lymphocytic leukemia patients treated with chemoimmunotherapy.
Tsagiopoulou M, Papakonstantinou N, Moysiadis T, ..., Rosenquist R, Stamatopoulos K
Clin Epigenetics 11 (1) 177 [2019-12-02; online 2019-12-02]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
Rojas-Macias MA, Mariethoz J, Andersson P, ..., Lisacek F, Karlsson NG
Nat Commun 10 (1) - [2019-12-00; online 2019-07-22]
Bioinformatics Support and Infrastructure [Technology development]
PubMed DOI Crossref
The genomic footprint of sexual conflict.
Sayadi A, Martinez Barrio A, Immonen E, ..., Nystedt B, Arnqvist G
Nat Ecol Evol 3 (12) 1725-1730 [2019-12-00; online 2019-11-18]
Bioinformatics Support and Infrastructure [Service]
PubMed DOI Crossref
Meckel syndrome: Clinical and mutation profile in six fetuses.
Radhakrishnan P, Nayak SS, Shukla A, Lindstrand A, Girisha KM
Clin. Genet. 96 (6) 560-565 [2019-12-00; online 2019-08-21]
Clinical Genomics Stockholm [Service]
DOI Crossref
The genomics of major psychiatric disorders in a large pedigree from Northern Sweden
Szatkiewicz J, Crowley JJ, Adolfsson AN, ..., Adolfsson R, Sullivan PF
Transl Psychiatry 9 (1) - [2019-12-00; online 2019-02-04]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Mercury methylating microbial communities of boreal forest soils
Xu J, Buck M, Eklöf K, ..., Bertilsson S, Bravo AG
Sci Rep 9 (1) - [2019-12-00; online 2019-01-24]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Undifferentiated pleomorphic sarcomas with PRDM10 fusions have a distinct gene expression profile
Hofvander J, Puls F, Pillay N, ..., Nilsson J, Mertens F
J. Pathol 249 (4) 425-434 [2019-12-00; online 2019-08-27]
Clinical Genomics Lund [Service]
DOI Crossref
Genetic variation in CADM2 as a link between psychological traits and obesity
Morris J, Bailey MES, Baldassarre D, ..., Smith DJ, Strawbridge RJ
Sci Rep 9 (1) - [2019-12-00; online 2019-05-14]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC
Nirwan N, Itoh Y, Singh P, ..., Amunts A, Saikrishnan K
Nat Commun 10 (1) - [2019-12-00; online 2019-07-11]
Cryo-EM [Service]
DOI Crossref
TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells
Joshi RN, Stadler C, Lehmann R, ..., Schmidt A, Vesterlund M
Front Immunol 10 (-) - [2019-11-26; online 2019-11-26]
Cell Profiling [Collaborative]
DOI Crossref
The human secretome
Uhlén M, Karlsson MJ, Hober A, ..., Fagerberg L, Sivertsson Å
Sci. Signal. 12 (609) eaaz0274 [2019-11-26; online 2019-11-26]
Cell Profiling [Collaborative]
DOI Crossref
Genetic predisposition to mosaic Y chromosome loss in blood
Thompson DJ, None , Genovese G, ..., None , None
Nature 575 (7784) 652-657 [2019-11-20; online 2019-11-20]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
The genomic footprint of sexual conflict
Sayadi A, Martinez Barrio A, Immonen E, ..., Nystedt B, Arnqvist G
Nat Ecol Evol - (-) - [2019-11-18; online 2019-11-18]
Bioinformatics Long-term Support WABI [Collaborative]
DOI Crossref
The genomic footprint of sexual conflict
Sayadi A, Martinez Barrio A, Immonen E, ..., Nystedt B, Arnqvist G
Nat Ecol Evol - (-) - [2019-11-18; online 2019-11-18]
NGI Uppsala (Uppsala Genome Center) [Collaborative]
DOI Crossref
Structure of a mitochondrial ATP synthase with bound native cardiolipin
Mühleip A, McComas SE, Amunts A
Elife 8 (-) - [2019-11-18; online 2019-11-18]
Cryo-EM [Service]
DOI Crossref
On-demand virtual research environments using microservices
Capuccini M, Larsson A, Carone M, ..., Toor S, Spjuth O
- 5 (-) e232 [2019-11-11; online 2019-11-11]
Bioinformatics Support and Infrastructure [Collaborative]
PubMed DOI Crossref
Viromics Reveal a Number of Novel RNA Viruses in Swedish Mosquitoes.
Öhlund P, Hayer J, Lundén H, Hesson JC, Blomström AL
Viruses 11 (11) - [2019-11-05; online 2019-11-05]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
A revised solid-state NMR method to assess the crystallinity of cellulose
Sparrman T, Svenningsson L, Sahlin-Sjövold K, ..., Westman G, Bernin D
Cellulose 26 (17) 8993-9003 [2019-11-00; online 2019-09-03]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Genetic architecture of subcortical brain structures in 38,851 individuals
Satizabal CL, Adams HHH, Hibar DP, ..., Seshadri S, Ikram MA
Nat Genet - (-) - [2019-10-21; online 2019-10-21]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
SynQuant: an automatic tool to quantify synapses from microscopy images
Wang Y, Wang C, Ranefall P, ..., Tian L, Yu G
- - (-) - [2019-10-09; online 2019-10-09]
BioImage Informatics [Collaborative]
DOI Crossref
Interoperable and scalable data analysis with microservices: applications in metabolomics
Emami Khoonsari P, Moreno P, Bergmann S, ..., Kultima K, Spjuth O
- 35 (19) 3752-3760 [2019-10-01; online 2019-03-09]
Bioinformatics Support and Infrastructure [Collaborative]
DOI Crossref
Skeletal Mineralization in Association with Type X Collagen Expression Is an Ancestral Feature for Jawed Vertebrates
Debiais-Thibaud M, Simion P, Ventéo S, ..., Mazan S, Haitina T
- 36 (10) 2265-2276 [2019-10-01; online 2019-07-04]
Genome Engineering Zebrafish [Service]
DOI Crossref
Genetic basis and timing of a major mating system shift in Capsella
Bachmann JA, Tedder A, Laenen B, ..., Castric V, Slotte T
New Phytol 224 (1) 505-517 [2019-10-00; online 2019-08-00]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Cell generation dynamics underlying naive T-cell homeostasis in adult humans.
Mold JE, Réu P, Olin A, ..., Brodin P, Frisén J
PLoS Biol. 17 (10) e3000383 [2019-10-00; online 2019-10-29]
Mass Cytometry [Collaborative]
PubMed DOI Crossref
Fam83F induces p53 stabilisation and promotes its activity.
Salama M, Benitez-Riquelme D, Elabd S, ..., Davidson G, Blattner C
pmc
Cell Death Differ. 26 (10) 2125-2138 [2019-10-00; online 2019-01-28]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Ataxia in Patients With Bi-Allelic NFASC Mutations and Absence of Full-Length NF186
Kvarnung M, Shahsavani M, Taylan F, ..., Lindstrand A, Falk A
Front Genet 10 (-) - [2019-09-24; online 2019-09-24]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
The TGFB2-AS1 lncRNA Regulates TGF-β Signaling by Modulating Corepressor Activity.
Papoutsoglou P, Tsubakihara Y, Caja L, ..., Heldin CH, Moustakas A
Cell Rep 28 (12) 3182-3198.e11 [2019-09-17; online 2019-09-19]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Impact of demography on linked selection in two outcrossing Brassicaceae species
Mattila TM, Laenen B, Horvath R, ..., Savolainen O, Slotte T
Ecol Evol 9 (17) 9532-9545 [2019-09-00; online 2019-08-13]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Array-Based Profiling of Proteins and Autoantibody Repertoires in CSF.
Pin E, Sjöberg R, Andersson E, ..., Nilsson P, Månberg A
Methods Mol. Biol. 2044 (-) 303-318 [2019-08-23; online 2019-08-23]
Autoimmunity Profiling [Technology development]
DOI Crossref
Boreal tree species affect soil organic matter composition and saprotrophic mineralization rates
Segura JH, Nilsson MB, Sparrman T, ..., Tolu J, Öquist MG
Plant Soil 441 (1-2) 173-190 [2019-08-00; online 2019-05-24]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Computational and Experimental Druggability Assessment of Human DNA Glycosylases
Michel M, Visnes T, Homan EJ, ..., Warpman Berglund U, Helleday T
ACS Omega 4 (7) 11642-11656 [2019-07-31; online 2019-07-05]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Combinations of Spok genes create multiple meiotic drivers in Podospora.
Vogan AA, Ament-Velásquez SL, Granger-Farbos A, ..., Saupe SJ, Johannesson H
pmc Dryad
Elife 8 (-) - [2019-07-26; online 2019-07-26]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Estrogen deprivation triggers an immunosuppressive phenotype in breast cancer cells
Hühn D, Martí-Rodrigo P, Mouron S, ..., Carreras-Puigvert J, Fernandez-Capetillo O
- - (-) - [2019-07-25; online 2019-07-25]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Seeking the ultimate challenge.
Brodin P
Nat Med - (-) - [2019-07-03; online 2019-07-03]
PubMed DOI Crossref
Epigenome-wide association study of lung function level and its change.
Imboden M, Wielscher M, Rezwan FI, ..., Jarvis D, Probst-Hensch NM
pmc
Eur. Respir. J. 54 (1) - [2019-07-00; online 2019-07-04]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Cryo-EM structure of the activated RET signaling complex reveals the importance of its cysteine-rich domain
Bigalke JM, Aibara S, Roth R, ..., Amunts A, Sandmark J
Sci Adv 5 (7) eaau4202 [2019-07-00; online 2019-07-31]
Cryo-EM [Service]
PubMed DOI Crossref
Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
Floyd JS, Bloch KM, Brody JA, ..., Alfirevic A, PREDICTION-ADR Consortium and EUDRAGENE
PLoS ONE 14 (6) e0218115 [2019-06-26; online 2019-06-26]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
A Call for Blood-In Human Immunology.
Brodin P, Duffy D, Quintana-Murci L
Immunity 50 (6) 1335-1336 [2019-06-18; online 2019-06-20]
Mass Cytometry [Technology development]
PubMed DOI Crossref
Can markers of biological age predict dependency in old age?
Jylhävä J, Jiang M, Foebel AD, Pedersen NL, Hägg S
pmc
Biogerontology 20 (3) 321-329 [2019-06-00; online 2019-01-21]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
The effects of male social environment on sperm phenotype and genome integrity
Silva WTAF, Sáez‐Espinosa P, Torijo‐Boix S, ..., Gómez‐Torres MJ, Immler S
J Evol Biol 32 (6) 535-544 [2019-06-00; online 2019-03-25]
Genome Engineering Zebrafish [Service]
DOI Crossref
β-Mannosidosis caused by a novel homozygous intragenic inverted duplication in MANBA
Blomqvist M, Smeland MF, Lindgren J, ..., Riise Stensland HMF, Asin-Cayuela J
Cold Spring Harb Mol Case Stud 5 (3) a003954 [2019-06-00; online 2019-03-18]
Clinical Genomics Stockholm [Service]
DOI Crossref
Toxic Activation of an AAA+ Protease by the Antibacterial Drug Cyclomarin A
Maurer M, Linder D, Franke KB, ..., Bukau B, Mogk A
Cell Chem Biol - (-) - [2019-06-00; online 2019-06-00]
Cryo-EM [Service]
PubMed DOI Crossref
Genetical Genomics of Tonic Immobility in the Chicken.
Fogelholm J, Inkabi S, Höglund A, ..., Henriksen R, Wright D
Genes 10 (5) - [2019-05-07; online 2019-05-07]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Pervasive hybridizations in the history of wheat relatives.
Glémin S, Scornavacca C, Dainat J, ..., David J, Ranwez V
pmc
Sci Adv 5 (5) eaav9188 [2019-05-00; online 2019-05-01]
Bioinformatics Support and Infrastructure [Service]
DOI Crossref
An Atlas of Vagal Sensory Neurons and Their Molecular Specialization
Kupari J, Häring M, Agirre E, Castelo-Branco G, Ernfors P
Cell Rep 27 (8) 2508-2523.e4 [2019-05-00; online 2019-05-00]
Eukaryotic Single Cell Genomics (ESCG) [Service]
PubMed DOI Crossref
B cell profiling in malaria reveals expansion and remodelling of CD11c+ B cell subsets.
Sundling C, Rönnberg C, Yman V, ..., Persson KE, Färnert A
JCI Insight 5 (-) - [2019-04-02; online 2019-04-02]
Mass Cytometry [Service]
DOI Crossref
Selection for longer lived sperm within ejaculate reduces reproductive ageing in offspring
Alavioon G, Cabrera Garcia A, LeChatelier M, Maklakov AA, Immler S
Evolution Letters 3 (2) 198-206 [2019-04-00; online 2019-02-14]
Genome Engineering Zebrafish [Service]
PubMed DOI Crossref
Leukocytosis is associated with retinopathy of prematurity in extremely preterm infants.
Lundgren P, Klevebro S, Brodin P, ..., Hallberg B, Hellström A
Acta Paediatr. - (-) - [2019-03-28; online 2019-03-28]
DOI Crossref
Characterization of Double Leached Waelz Oxide for Identification of Fluoride Mineral
Sar S, Sundqvist Ökvist L, Sparrman T, Engström F, Samuelsson C
Metals 9 (3) 361 [2019-03-20; online 2019-03-20]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Detecting selection signatures in three Iranian sheep breeds
Manzari Z, Mehrabani‐Yeganeh H, Nejati‐Javaremi A, Moradi MH, Gholizadeh M
Anim Genet - (-) - [2019-03-18; online 2019-03-18]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Individual and stable autoantibody repertoires in healthy individuals.
Neiman M, Hellström C, Just D, ..., Uhlén M, Nilsson P
Autoimmunity - (-) 1-11 [2019-03-05; online 2019-03-05]
Autoimmunity Profiling [Collaborative]
DOI Crossref
Chromosomal inversions associated with environmental adaptation in honeybees
Christmas MJ, Wallberg A, Bunikis I, ..., Wallerman O, Webster MT
Mol Ecol 28 (6) 1358-1374 [2019-03-00; online 2018-12-21]
NGI Uppsala (Uppsala Genome Center) [Collaborative]
PubMed DOI Crossref
Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.
Acosta-Herrera M, Kerick M, González-Serna D, ..., Mayes MD, Martin J
Ann. Rheum. Dis. 78 (3) 311-319 [2019-03-00; online 2018-12-20]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Immune-informed mucin hydrogels evade fibrotic foreign body response in vivo
Yan H, Seignez C, Hjorth M, ..., Phillipson M, Crouzier T
- - (-) - [2019-02-19; online 2019-02-19]
Cell Profiling [Service]
DOI Crossref
Zinc depletion does not necessarily induce ribosome hibernation in mycobacteria
Tobiasson V, Dow A, Prisic S, Amunts A
Proc Natl Acad Sci USA 116 (7) 2395-2397 [2019-02-12; online 2019-01-25]
Cryo-EM [Service]
DOI Crossref
Spatiotemporal dissection of the cell cycle regulated human proteome
Mahdessian D, Sullivan D, Danielsson F, ..., Lindskog C, Lundberg E
- - (-) - [2019-02-07; online 2019-02-07]
Cell Profiling [Collaborative]
PubMed DOI Crossref
Disentangling the genetics of lean mass.
Karasik D, Zillikens MC, Hsu YH, ..., Kiel DP, Ohlsson C
Am. J. Clin. Nutr. 109 (2) 276-287 [2019-02-01; online 2019-02-06]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Two Basidiomycete Fungi in the Cortex of Wolf Lichens
Tuovinen V, Ekman S, Thor G, ..., Spribille T, Johannesson H
Current Biology 29 (3) 476-483.e5 [2019-02-00; online 2019-02-00]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
A Chemical Screen Identifies Compounds Limiting the Toxicity of C9ORF72 Dipeptide Repeats
Corman A, Jung B, Häggblad M, ..., Carreras-Puigvert J, Fernandez-Capetillo O
Cell Chem Biol 26 (2) 235-243.e5 [2019-02-00; online 2019-02-00]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Low Molecular Mass Myocardial Hyaluronan in Human Hypertrophic Cardiomyopathy
Lorén C, Dahl C, Do L, ..., Mörner S, Hellman U
Cells 8 (2) 97 [2019-01-29; online 2019-01-29]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based setting.
Chauhan G, Adams HHH, Satizabal CL, ..., Debette S, Stroke Genetics Network (SiGN), the International Stroke Genetics Consortium (ISGC), METASTROKE, Alzheimer's Disease Genetics Consortium (ADGC), and the Neurology Working Group of the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium
pmc
Neurology - (-) - [2019-01-16; online 2019-01-16]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Mosaic loss of chromosome Y in leukocytes matters
Forsberg LA, Halvardson J, Rychlicka-Buniowska E, ..., Ingelsson M, Dumanski JP
Nat Genet 51 (1) 4-7 [2019-01-00; online 2018-10-29]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Tissue-specific hormone profiles from woody poplar roots under bending stress
De Zio E, Trupiano D, Karady M, ..., Ljung K, Scippa GS
Physiol Plantarum 165 (1) 101-113 [2019-01-00; online 2018-10-15]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Introducing ribosomal tandem repeat barcoding for fungi
Wurzbacher C, Larsson E, Bengtsson‐Palme J, ..., Kagami M, Nilsson RH
Mol Ecol Resour 19 (1) 118-127 [2019-01-00; online 2018-10-24]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Auxin Function in the Brown Alga Dictyota dichotoma
Bogaert KA, Blommaert L, Ljung K, Beeckman T, De Clerck O
Plant Physiol. 179 (1) 280-299 [2019-01-00; online 2018-11-12]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Cryo-EM structure of the yeast respiratory supercomplex
Rathore S, Berndtsson J, Marin-Buera L, ..., Brzezinski P, Ott M
Nat Struct Mol Biol - (-) - [2018-12-31; online 2018-12-31]
Cryo-EM [Collaborative]
PubMed DOI Crossref
B cell alterations during BAFF inhibition with belimumab in SLE.
Ramsköld D, Parodis I, Lakshmikanth T, ..., Gunnarsson I, Malmström V
EBioMedicine - (-) - [2018-12-25; online 2018-12-25]
Mass Cytometry [Service]
DOI Crossref
Deep Learning in Image Cytometry: A Review
Gupta A, Harrison PJ, Wieslander H, ..., Sintorn IM, Wählby C
Cytometry - (-) - [2018-12-19; online 2018-12-19]
BioImage Informatics [Service]
PubMed DOI Crossref
Cotranslational Folding of a Pentarepeat β-Helix Protein.
Notari L, Martínez-Carranza M, Farías-Rico JA, Stenmark P, von Heijne G
J. Mol. Biol. 430 (24) 5196-5206 [2018-12-07; online 2018-10-27]
Protein Science Facility (PSF) [Service]
DOI Crossref
Carbon’s Three-Center, Four-Electron Tetrel Bond, Treated Experimentally
Karim A, Schulz N, Andersson H, ..., Keller S, Erdélyi M
J. Am. Chem. Soc. - (-) - [2018-12-07; online 2018-12-07]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Porous Cellulose Nanofiber-Based Microcapsules for Biomolecular Sensing
Paulraj T, Wennmalm S, Riazanova AV, ..., Crespo GA, Svagan AJ
ACS Appl. Mater. Interfaces 10 (48) 41146-41154 [2018-12-05; online 2018-11-09]
Advanced Light Microscopy (ALM) [Collaborative]
DOI Crossref
Crystal Structures and Cytotoxicity of ent-Kaurane-Type Diterpenoids from Two Aspilia Species
Yaouba S, Valkonen A, Coghi P, ..., Erdélyi M, Yenesew A
Molecules 23 (12) 3199 [2018-12-04; online 2018-12-04]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
A Chemical Screen Identifies Compounds Limiting the Toxicity of C9ORF72 Dipeptide Repeats
Corman A, Jung B, Häggblad M, ..., Carreras-Puigvert J, Fernandez-Capetillo O
Cell Chem Biol - (-) - [2018-12-00; online 2018-12-00]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Structure of a functional obligate complex III2IV2 respiratory supercomplex from Mycobacterium smegmatis
Wiseman B, Nitharwal RG, Fedotovskaya O, ..., Brzezinski P, Högbom M
Nat Struct Mol Biol 25 (12) 1128-1136 [2018-12-00; online 2018-12-05]
Cryo-EM [Service]
DOI Crossref
Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins
Spåhr H, Chia T, Lingford JP, ..., Filipovska A, Rackham O
Nat Commun 9 (1) - [2018-12-00; online 2018-06-07]
Protein Science Facility (PSF) [Service]
DOI Crossref
A Chemical Screen Identifies Compounds Limiting the Toxicity of C9ORF72 Dipeptide Repeats
Corman A, Jung B, Häggblad M, ..., Carreras-Puigvert J, Fernandez-Capetillo O
Cell Chem Biol - (-) - [2018-12-00; online 2018-12-00]
Cell Profiling [Service]
PubMed DOI Crossref
The shape of the ribosome exit tunnel affects cotranslational protein folding
Kudva R, Tian P, Pardo-Avila F, ..., Bernstein HD, von Heijne G
Elife 7 (-) - [2018-11-26; online 2018-11-26]
Cryo-EM [Service]
DOI Crossref
Modelling of zero-inflation improves inference of metagenomic gene count data
Jonsson V, Österlund T, Nerman O, Kristiansson E
Stat Methods Med Res - (-) 096228021881135 [2018-11-25; online 2018-11-25]
Systems Biology [Technology development]
PubMed DOI Crossref
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Zivanov J, Nakane T, Forsberg BO, ..., Lindahl E, Scheres SH
Elife 7 (-) - [2018-11-09; online 2018-11-09]
Cryo-EM [Technology development]
DOI Crossref
Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens
Srinivas V, Lebrette H, Lundin D, ..., Sjöberg BM, Högbom M
Nature 563 (7731) 416-420 [2018-11-00; online 2018-10-31]
Chemical Proteomics & Proteogenomics [Collaborative]
PubMed DOI Crossref
XLSY: Extra-Large NMR Spectroscopy
Pustovalova Y, Mayzel M, Orekhov VY
Angew. Chem. Int. Ed. 57 (43) 14043-14045 [2018-10-22; online 2018-10-01]
Swedish NMR Centre (SNC) [Technology development]
DOI Crossref
Halogen Bond Asymmetry in Solution
Lindblad S, Mehmeti K, Veiga AX, ..., Gräfenstein J, Erdélyi M
J. Am. Chem. Soc. 140 (41) 13503-13513 [2018-10-17; online 2018-09-20]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
An orthotopic glioblastoma animal model suitable for high-throughput screenings
Pudelko L, Edwards S, Balan M, ..., Helleday T, Bräutigam L
Neuro Oncol 20 (11) 1475-1484 [2018-10-09; online 2018-05-10]
Advanced Light Microscopy (ALM) [Collaborative]
DOI Crossref
The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water
Orman-Ligeza B, Morris EC, Parizot B, ..., Beeckman T, Draye X
Current Biology 28 (19) 3165-3173.e5 [2018-10-00; online 2018-10-00]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Using Scipion for stream image processing at Cryo-EM facilities
Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, ..., Conesa P, Carazo JM
Journal of Structural Biology - (-) - [2018-10-00; online 2018-10-00]
Cryo-EM [Technology development]
PubMed DOI Crossref
Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.
Evangelou E, Warren HR, Mosen-Ansorena D, ..., Caulfield MJ, Million Veteran Program
Nat. Genet. 50 (10) 1412-1425 [2018-10-00; online 2018-09-17]
Bioinformatics Compute and Storage [Service]
PubMed DOI Crossref
NMR Determination of the Binding Constant of Ionic Species: A Caveat
Schulz N, Schindler S, Huber SM, Erdelyi M
J. Org. Chem. 83 (18) 10881-10886 [2018-09-21; online 2018-08-15]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Contribution of allelic imbalance to colorectal cancer.
Palin K, Pitkänen E, Turunen M, ..., Taipale J, Aaltonen LA
pmc
Nat Commun 9 (1) 3664 [2018-09-10; online 2018-09-10]
Bioinformatics Compute and Storage [Service] High-throughput Genome Engineering (HTGE) [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
PubMed DOI Crossref
Autoantibody profiling reveals four protein candidate autoantigens associated with systemic lupus erythematosus.
Frostegård J, Hellström C, Nilsson P, Frostegård AG, Ajeganova S
Lupus 27 (10) 1670-1678 [2018-09-00; online 2018-07-24]
Autoimmunity Profiling [Service]
DOI Crossref
Broad spectrum developmental role of Brachypodium AUX1
van der Schuren A, Voiniciuc C, Bragg J, ..., Pauly M, Hardtke CS
New Phytol 219 (4) 1216-1223 [2018-09-00; online 2018-06-27]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
The molecular genetic basis of herbivory between butterflies and their host plants.
Nallu S, Hill JA, Don K, ..., Wheat CW, Kronforst MR
pmc mid SRA
Nat Ecol Evol 2 (9) 1418-1427 [2018-09-00; online 2018-08-03]
Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service]
DOI Crossref
Ein Fall von Pankreaskarzinom
Löhr JM, Kordes M, Gustafsson-Liljefors M, ..., Permert J, Jäger D
Forum 33 (4) 232-235 [2018-09-00; online 2018-08-14]
Clinical Genomics Stockholm [Collaborative]
PubMed DOI Crossref
Multi-ethnic genome-wide association study for atrial fibrillation.
Roselli C, Chaffin MD, Weng LC, ..., Lunetta KL, Ellinor PT
pmc mid
Nat. Genet. 50 (9) 1225-1233 [2018-09-00; online 2018-06-11]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Life history of Parnips and the evolutionary origin of gall wasps
Ronquist F, Nylander JAA, Vårdal H, Nieves-Aldrey JL
JHR 65 (-) 91-110 [2018-08-27; online 2018-08-27]
Bioinformatics Support and Infrastructure [Collaborative]
PubMed DOI Crossref
Diversity of Interneurons in the Dorsal Striatum Revealed by Single-Cell RNA Sequencing and PatchSeq.
Muñoz-Manchado AB, Bengtsson Gonzales C, Zeisel A, ..., Linnarsson S, Hjerling-Leffler J
pmc
Cell Rep 24 (8) 2179-2190.e7 [2018-08-21; online 2018-08-23]
Eukaryotic Single Cell Genomics (ESCG) [Service]
DOI Crossref
Deep learning is combined with massive-scale citizen science to improve large-scale image classification
Sullivan DP, Winsnes CF, Åkesson L, ..., Szantner A, Lundberg E
Nat Biotechnol 36 (9) 820-828 [2018-08-20; online 2018-08-20]
Cell Profiling [Collaborative]
DOI Crossref
Scanning electron microscopy as a tool for evaluating morphology of amyloid structures formed on surface plasmon resonance chips
Bra¨nnstro¨m K, Gharibyan AL, Islam T, ..., Pamren A, Olofsson A
Data Brief 19 (-) 1166-1170 [2018-08-00; online 2018-08-00]
Cryo-EM [Service]
PubMed DOI Crossref
Autoantibody profiling in intraocular fluid of patients with uveitis.
Ten Berge JC, Schreurs MW, van Rosmalen J, Rothova A
Exp. Eye Res. 176 (-) 141-146 [2018-07-10; online 2018-07-10]
Autoimmunity Profiling [Service]
DOI Crossref
Metabolic Profiling of Multiorgan Samples: Evaluation of MODY5/RCAD Mutant Mice
Torell F, Bennett K, Cereghini S, ..., Trygg J, Lundstedt T
J. Proteome Res. 17 (7) 2293-2306 [2018-07-06; online 2018-06-06]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
OLMα2 Cells Bidirectionally Modulate Learning
Siwani S, França ASC, Mikulovic S, ..., Tort ABL, Kullander K
Neuron 99 (2) 404-412.e3 [2018-07-00; online 2018-07-00]
Advanced Light Microscopy (ALM) [Collaborative] Bioinformatics Compute and Storage [Service]
PubMed DOI Crossref
appreci8: a pipeline for precise variant calling integrating 8 tools
Sandmann S, Karimi M, de Graaf AO, ..., Jansen JH, Dugas M
- - (-) - [2018-06-26; online 2018-06-26]
Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
High similarity in the microbiota of cold-water sponges of the Genus
Cárdenas CA, González-Aravena M, Font A, ..., Malmberg M, Bongcam-Rudloff E
pmc
PeerJ 6 (-) e4935 [2018-06-07; online 2018-06-07]
Bioinformatics Compute and Storage [Service] NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
The Properties of Amyloid-β Fibrils Are Determined by their Path of Formation
Brännström K, Islam T, Gharibyan AL, ..., Pamrén A, Olofsson A
Journal of Molecular Biology 430 (13) 1940-1949 [2018-06-00; online 2018-06-00]
Cryo-EM [Service]
DOI Crossref
Plant Hormonomics: Multiple Phytohormone Profiling by Targeted Metabolomics
Šimura J, Antoniadi I, Široká J, ..., Ljung K, Novák O
Plant Physiol. 177 (2) 476-489 [2018-06-00; online 2018-04-27]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Liquid Norbornadiene Photoswitches for Solar Energy Storage
Dreos A, Wang Z, Udmark J, ..., Nielsen MB, Moth-Poulsen K
Adv. Energy Mater. 8 (18) 1703401 [2018-06-00; online 2018-03-25]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen
Felten J, Vahala J, Love J, ..., Mellerowicz EJ, Sundberg B
New Phytol 218 (3) 999-1014 [2018-05-00; online 2018-03-12]
Cryo-EM [Service]
PubMed DOI Crossref
Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling.
Roswall P, Bocci M, Bartoschek M, ..., Eriksson U, Pietras K
pmc mid
Nat. Med. 24 (4) 463-473 [2018-05-00; online 2018-03-12]