Publications

2232 publications

PubMed DOI Crossref
Stool frequency is associated with gut microbiota composition.
Hadizadeh F, Walter S, ..., Franke A, D'Amato M
Gut 66 (3) 559-560 [2017-03-00; online 2016-05-20]
Clinical Genomics
PubMed DOI Crossref
Discovery of new biomarkers for atrial fibrillation using a custom-made proteomics chip.
Lind L, Sundström J, ..., Hagström E, Ärnlöv J
Heart 103 (5) 377-382 [2017-03-00; online 2016-09-10]
Clinical Biomarkers
PubMed DOI Crossref
Associations of defect mismatch repair genes with prognosis and heredity in sporadic colorectal cancer.
Ghanipour L, Jirström K, ..., Glimelius B, Birgisson H
Eur J Surg Oncol 43 (2) 311-321 [2017-02-00; online 2016-11-12]
Tissue Profiling
PubMed DOI Crossref
Perivascular PDGFR-β is an independent marker for prognosis in renal cell carcinoma.
Frödin M, Mezheyeuski A, ..., Johansson M, Östman A
Br. J. Cancer 116 (2) 195-201 [2017-01-17; online 2016-12-09]
Tissue Profiling
PubMed DOI Crossref
Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects.
CNV and Schizophrenia Working Groups of the Psychiatric Genomics Consortium None, Psychosis Endophenotypes International Consortium None
Nat. Genet. 49 (1) 27-35 [2017-01-00; online 2016-11-22]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Elevated levels of circulating CDH5 and FABP1 in association with human drug-induced liver injury.
Mikus M, Drobin K, ..., Nilsson P, Schuppe-Koistinen I
Liver Int. 37 (1) 132-140 [2017-01-00; online 2016-05-26]
Biobank Profiling
PubMed DOI Crossref
The protein phosphatase 2A regulatory subunit PR70 is a gonosomal melanoma tumor suppressor gene.
van Kempen LC, Redpath M, ..., Feunteun J, Spatz A
Sci Transl Med 8 (369) 369ra177 [2016-12-14; online 2016-12-16]
Tissue profiling
PubMed DOI Crossref
TRPM8 polymorphisms associated with increased risk of IBS-C and IBS-M.
Henström M, Hadizadeh F, ..., Farrugia G, D'Amato M
Gut - (-) - [2016-12-14; online 2016-12-14]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
The In Vitro Stability of Circulating Tumour DNA.
Henao Diaz E, Yachnin J, Grönberg H, Lindberg J
PLoS ONE 11 (12) e0168153 [2016-12-13; online 2016-12-13]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
An oxygen-sensitive toxin-antitoxin system.
Marimon O, Teixeira JM, ..., Wood TK, Pons M
Nat Commun 7 (-) 13634 [2016-12-08; online 2016-12-08]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy.
Ten Berge JC, van Rosmalen J, ..., Rothova A, Schreurs MW
PLoS ONE 11 (12) e0167909 [2016-12-08; online 2016-12-08]
Protein and Peptide Arrays
PubMed DOI Crossref
Frequent NFKBIE deletions are associated with poor outcome in primary mediastinal B-cell lymphoma.
Mansouri L, Noerenberg D, ..., Rosenquist R, Damm F
Blood 128 (23) 2666-2670 [2016-12-08; online 2016-09-28]
Clinical Sequencing
PubMed DOI Crossref
Application of amide hydrogen/deuterium exchange mass spectrometry for epitope mapping in human cystatin C.
Prądzińska M, Behrendt I, ..., Rodziewicz-Motowidło S, Czaplewska P
Amino Acids 48 (12) 2809-2820 [2016-12-00; online 2016-08-29]
Advanced Mass Spectrometry Proteomics
PubMed DOI Crossref
Dissecting the Metabolic Role of Mitochondria during Developmental Leaf Senescence.
Chrobok D, Law SR, ..., Gardeström P, Keech O
Plant Physiol. 172 (4) 2132-2153 [2016-12-00; online 2016-10-21]
Swedish Metabolomics Centre
PubMed DOI Crossref
A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish.
Varshney GK, Carrington B, ..., Sood R, Burgess SM
Nat Protoc 11 (12) 2357-2375 [2016-12-00; online 2016-10-27]
Zebrafish
PubMed DOI Crossref
The endosomal transcriptional regulator RNF11 integrates degradation and transport of EGFR.
Scharaw S, Iskar M, ..., Bork P, Pepperkok R
J. Cell Biol. 215 (4) 543-558 [2016-11-21; online 2016-11-08]
Cell Profiling
PubMed DOI Crossref
Nuclear Magnetic Resonance Structure and Mutational Analysis of the Lactococcin A Immunity Protein.
Kristiansen PE, Persson C, ..., Nissen-Meyer J, Oppegård C
Biochemistry 55 (45) 6250-6257 [2016-11-15; online 2016-11-04]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Case-specific potentiation of glioblastoma drugs by pterostilbene.
Schmidt L, Baskaran S, ..., Krona C, Nelander S
Oncotarget 7 (45) 73200-73215 [2016-11-08; online 2016-10-01]
Biochemical and Cellular Screening
DOI Crossref
WhatsHap: fast and accurate read-based phasing
Martin M, Patterson M, ..., Schoenhuth A, Marschall T
bioRxiv - (-) - [2016-11-02; online 2016-11-02]
Bioinformatics Long-term Support WABI
PubMed DOI Crossref
The H3 chaperone function of NASP is conserved in Arabidopsis.
Maksimov V, Nakamura M, ..., Bergquist J, Hennig L
Plant J. 88 (3) 425-436 [2016-11-00; online 2016-09-15]
Mass Spectrometry-based Proteomics, Uppsala
PubMed DOI Crossref
Long-term outcome in young women with breast cancer: a population-based study.
Fredholm H, Magnusson K, ..., Frisell J, Fredriksson I
Breast Cancer Res. Treat. 160 (1) 131-143 [2016-11-00; online 2016-09-15]
Tissue Profiling
PubMed DOI Crossref
Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure.
Papazian S, Khaling E, ..., Blande JD, Albrectsen BR
Plant Physiol. 172 (3) 2057-2078 [2016-11-00; online 2016-10-21]
Swedish Metabolomics Centre
PubMed DOI Crossref
A ribonucleotide reductase inhibitor with deoxyribonucleoside-reversible cytotoxicity.
Crona M, Codó P, ..., Fernandes AP, Tholander F
Mol Oncol 10 (9) 1375-1386 [2016-11-00; online 2016-07-26]
Protein Science Facility
PubMed DOI Crossref
Isolation and characterization of autoantibodies against human cystatin C.
Prądzińska M, Behrendt I, ..., Macur K, Czaplewska P
Amino Acids 48 (11) 2501-2518 [2016-11-00; online 2016-06-08]
Advanced Mass Spectrometry Proteomics
PubMed DOI Crossref
Rawcopy: Improved copy number analysis with Affymetrix arrays.
Mayrhofer M, Viklund B, Isaksson A
Sci Rep 6 (-) 36158 [2016-10-31; online 2016-10-31]
Array and Analysis Facility
PubMed DOI Crossref
(13)C NMR assignments of regenerated cellulose from solid-state 2D NMR spectroscopy.
Idström A, Schantz S, ..., Gatenholm P, Nordstierna L
Carbohydr Polym 151 (-) 480-487 [2016-10-20; online 2016-05-31]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.
Segerstolpe Å, Palasantza A, ..., Ämmälä C, Sandberg R
Cell Metab. 24 (4) 593-607 [2016-10-11; online 2016-09-27]
Eukaryotic Single Cell Genomics
PubMed DOI Crossref
Analysis of the brain mural cell transcriptome.
He L, Vanlandewijck M, ..., Keller A, Betsholtz C
Sci Rep 6 (-) 35108 [2016-10-11; online 2016-10-11]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Supersaturation of poorly soluble drugs induced by mesoporous magnesium carbonate.
Zhang P, Zardán Gómez de la Torre T, ..., Bergström C, Strømme M
Eur J Pharm Sci 93 (-) 468-474 [2016-10-10; online 2016-08-31]
BioMaterial Interactions (BioMat)
PubMed DOI Crossref
Multidimensional Normalization to Minimize Plate Effects of Suspension Bead Array Data.
Hong MG, Lee W, ..., Pawitan Y, Schwenk JM
J. Proteome Res. 15 (10) 3473-3480 [2016-10-07; online 2016-08-30]
Biobank Profiling
PubMed DOI Crossref
Estrogen Receptor α Promotes Breast Cancer by Reprogramming Choline Metabolism.
Jia M, Andreassen T, ..., Moestue SA, Dahlman-Wright K
Cancer Res. 76 (19) 5634-5646 [2016-10-01; online 2016-07-28]
Swedish Metabolomics Centre
PubMed DOI Crossref
Sodium pump organization in dendritic spines.
Blom H, Bernhem K, Brismar H
Neurophotonics 3 (4) 041803 [2016-10-00; online 2016-05-14]
Advanced Light Microscopy
DOI Crossref
Direct acquisition of organic N by white clover even in the presence of inorganic N
Czaban W, Jämtgård S, ..., Nicolaisen M, Fomsgaard IS
Plant Soil 407 (1-2) 91-107 [2016-10-00; online 2016-04-15]
Swedish Metabolomics Centre
PubMed DOI Crossref
Metabolomic Quality Assessment of EDTA Plasma and Serum Samples.
Malm L, Tybring G, ..., Landin B, Galli J
Biopreserv Biobank 14 (5) 416-423 [2016-10-00; online 2016-06-27]
Swedish Metabolomics Centre
PubMed DOI Crossref
Autoantibodies Targeting a Collecting Duct-Specific Water Channel in Tubulointerstitial Nephritis.
Landegren N, Pourmousa Lindberg M, ..., Fenton RA, Kämpe O
J. Am. Soc. Nephrol. 27 (10) 3220-3228 [2016-10-00; online 2016-03-18]
PLA Proteomics
PubMed DOI Crossref
A proposal for validation of antibodies.
Uhlen M, Bandrowski A, ..., Snyder M, Yamamoto T
Nat. Methods 13 (10) 823-827 [2016-10-00; online 2016-09-07]
Cell Profiling
PubMed DOI Crossref
Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.
Butler LM, Hallström BM, ..., Renné T, Odeberg J
Cell Syst 3 (3) 287-301.e3 [2016-09-28; online 2016-09-20]
Tissue Profiling
PubMed DOI Crossref
Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing.
Kostareva A, Kiselev A, ..., Sejersen T, Shlyakhto E
PLoS ONE 11 (9) e0163362 [2016-09-23; online 2016-09-23]
Clinical Genomics
PubMed DOI Crossref
Naphthalene Derivatives from the Roots of Pentas parvifolia and Pentas bussei.
Abdissa N, Pan F, ..., Yenesew A, Erdélyi M
J. Nat. Prod. 79 (9) 2181-2187 [2016-09-23; online 2016-08-12]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
NUDT15 Hydrolyzes 6-Thio-DeoxyGTP to Mediate the Anticancer Efficacy of 6-Thioguanine.
Valerie NC, Hagenkort A, ..., Jemth AS, Helleday T
Cancer Res. 76 (18) 5501-5511 [2016-09-15; online 2016-08-16]
Protein Science Facility
PubMed DOI Crossref
Association between renin and atherosclerotic burden in subjects with and without type 2 diabetes.
Gonçalves I, Edsfeldt A, ..., Nilsson J, SUMMIT consortium None
BMC Cardiovasc Disord 16 (1) 171 [2016-09-05; online 2016-09-05]
Clinical Biomarkers
PubMed DOI Crossref
Autoantibody targets in vaccine-associated narcolepsy.
Häggmark-Månberg A, Zandian A, ..., Olsson T, Nilsson P
Autoimmunity 49 (6) 421-433 [2016-09-00; online 2016-05-22]
Protein and Peptide Arrays
PubMed DOI Crossref
Tissue microarray profiling in human heart failure.
Lal S, Nguyen L, ..., Li A, Dos Remedios C
Proteomics 16 (17) 2319-2326 [2016-09-00; online 2016-07-02]
Tissue Profiling
PubMed DOI Crossref
Clinical impact of recurrently mutated genes on lymphoma diagnostics: state-of-the-art and beyond.
Rosenquist R, Rosenwald A, ..., Stamatopoulos K, European Research Initiative on CLL (ERIC) and the European Association for Haematopathology (EAHP) None
Haematologica 101 (9) 1002-1009 [2016-09-00; online 2016-09-02]
Clinical Sequencing
PubMed DOI Crossref
Phosphorylation of Leukotriene C4 Synthase at Serine 36 Impairs Catalytic Activity.
Ahmad S, Ytterberg AJ, ..., Rinaldo-Matthis A, Haeggström JZ
J. Biol. Chem. 291 (35) 18410-18418 [2016-08-26; online 2016-06-30]
Advanced Mass Spectrometry Proteomics
PubMed DOI Crossref
Enantioselective Organocatalyzed Transformations of β-Ketoesters.
Govender T, Arvidsson PI, ..., Kruger HG, Naicker T
Chem. Rev. 116 (16) 9375-9437 [2016-08-24; online 2016-07-28]
Drug Discovery and Development
PubMed DOI Crossref
Substituent Effects on the [N-I-N](+) Halogen Bond.
Carlsson AC, Mehmeti K, ..., Rissanen K, Erdélyi M
J. Am. Chem. Soc. 138 (31) 9853-9863 [2016-08-10; online 2016-06-17]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer.
Mattsson JS, Brunnström H, ..., Micke P, Svensson MA
BMC Cancer 16 (-) 603 [2016-08-05; online 2016-08-05]
Tissue Profiling
PubMed DOI Crossref
The genetic architecture of type 2 diabetes.
Fuchsberger C, Flannick J, ..., Altshuler D, McCarthy MI
Nature 536 (7614) 41-47 [2016-08-04; online 2016-07-12]
Bioinformatics Compute and Storage (UPPNEX) NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Kinetic investigation of human 5-lipoxygenase with arachidonic acid.
Mittal M, Kumar RB, ..., Haeggström JZ, Rinaldo-Matthis A
Bioorg. Med. Chem. Lett. 26 (15) 3547-3551 [2016-08-01; online 2016-06-11]
Protein Science Facility
PubMed DOI Crossref
Profilin connects actin assembly with microtubule dynamics.
Nejedla M, Sadi S, ..., Aspenström P, Karlsson R
Mol. Biol. Cell 27 (15) 2381-2393 [2016-08-01; online 2016-06-17]
Advanced Light Microscopy
PubMed DOI Crossref
ω-3 Polyunsaturated Fatty Acid Biomarkers and Coronary Heart Disease: Pooling Project of 19 Cohort Studies.
Del Gobbo LC, Imamura F, ..., Mozaffarian D, Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Fatty Acids and Outcomes Research Consortium (FORCe) None
JAMA Intern Med 176 (8) 1155-1166 [2016-08-01; online 2016-07-01]
Bioinformatics Compute and Storage (UPPNEX) NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Developmental exposure to progestins causes male bias and precocious puberty in zebrafish (Danio rerio).
Svensson J, Mustafa A, ..., Schmitz M, Brunström B
Aquat. Toxicol. 177 (-) 316-323 [2016-08-00; online 2016-06-14]
Zebrafish
PubMed DOI Crossref
Analysis of neural crest-derived clones reveals novel aspects of facial development.
Kaucka M, Ivashkin E, ..., Hellander A, Adameyko I
Sci Adv 2 (8) e1600060 [2016-08-00; online 2016-08-03]
Advanced Light Microscopy
PubMed DOI Crossref
SATB2 is expressed in Merkel cell carcinoma.
Fukuhara M, Agnarsdóttir M, ..., Coter A, Ponten F
Arch. Dermatol. Res. 308 (6) 449-454 [2016-08-00; online 2016-06-06]
Tissue Profiling
PubMed DOI Crossref
A C2HC zinc finger is essential for the RING-E2 interaction of the ubiquitin ligase RNF125.
Bijlmakers MJ, Teixeira JM, ..., Pons M, Crosas B
Sci Rep 6 (-) 29232 [2016-07-14; online 2016-07-14]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Effects of Fluoxetine on Human Embryo Development.
Kaihola H, Yaldir FG, ..., Åkerud H, Sundström-Poromaa I
Front Cell Neurosci 10 (-) 160 [2016-06-16; online 2016-06-16]
Mass Spectrometry-based Proteomics, Uppsala
PubMed DOI Crossref
Read-based phasing of related individuals.
Garg S, Martin M, Marschall T
Bioinformatics 32 (12) i234-i242 [2016-06-15; online 2016-06-17]
Bioinformatics Long-term Support WABI
PubMed DOI Crossref
Elevated levels of FN1 and CCL2 in bronchoalveolar lavage fluid from sarcoidosis patients.
Hamsten C, Wiklundh E, ..., Grunewald J, Häggmark-Månberg A
Respir. Res. 17 (1) 69 [2016-06-04; online 2016-06-04]
Biobank Profiling
PubMed DOI Crossref
Common and Rare Genetic Variation in CCR2, CCR5, or CX3CR1 and Risk of Atherosclerotic Coronary Heart Disease and Glucometabolic Traits.
Golbus JR, Stitziel NO, ..., Reilly MP, CARDIoGRAMplusC4D, Myocardial Infarction Genetics (MIGen), Exome Sequencing Project and Early-Onset Myocardial Infarction (ESP EOMI), and the Pakistan Risk of Myocardial Infarction Study (PROMIS) Consortia* None
Circ Cardiovasc Genet 9 (3) 250-258 [2016-06-00; online 2016-03-26]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Detection of Biomarkers with Solid-Phase Proximity Ligation Assay in Patients with Colorectal Cancer.
Ghanipour L, Darmanis S, ..., Påhlman L, Birgisson H
Transl Oncol 9 (3) 251-255 [2016-06-00; online 2016-06-09]
Tissue Profiling
PubMed DOI Crossref
New technologies for DNA analysis--a review of the READNA Project.
McGinn S, Bauer D, ..., Willcocks JP, Gut IG
N Biotechnol 33 (3) 311-330 [2016-05-25; online 2015-10-31]
Clinical Sequencing
PubMed DOI Crossref
Targeting Serglycin Prevents Metastasis in Murine Mammary Carcinoma.
Roy A, Femel J, ..., Olsson AK, Åbrink M
PLoS ONE 11 (5) e0156151 [2016-05-25; online 2016-05-25]
Array and Analysis Facility
PubMed DOI Crossref
Chroman-4-one and chromone based somatostatin β-turn mimetics.
Fridén-Saxin M, Seifert T, ..., Grøtli M, Luthman K
Eur J Med Chem 114 (-) 59-64 [2016-05-23; online 2016-02-21]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
A Population Shift between Sparsely Populated Folding Intermediates Determines Amyloidogenicity.
Karamanos TK, Pashley CL, ..., Orekhov VY, Radford SE
J. Am. Chem. Soc. 138 (19) 6271-6280 [2016-05-18; online 2016-05-06]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
A combined computational and structural model of the full-length human prolactin receptor.
Bugge K, Papaleo E, ..., Lindorff-Larsen K, Kragelund BB
Nat Commun 7 (-) 11578 [2016-05-13; online 2016-05-13]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Divergent non-heme iron enzymes in the nogalamycin biosynthetic pathway.
Siitonen V, Selvaraj B, ..., Schneider G, Metsä-Ketelä M
Proc. Natl. Acad. Sci. U.S.A. 113 (19) 5251-5256 [2016-05-10; online 2016-04-25]
Protein Science Facility
PubMed DOI Crossref
The Effects of High Steady State Auxin Levels on Root Cell Elongation in Brachypodium.
Pacheco-Villalobos D, Díaz-Moreno SM, ..., Bulone V, Hardtke CS
Plant Cell - (-) - [2016-05-05; online 2016-05-05]
Swedish Metabolomics Centre
PubMed DOI Crossref
Sister Chromatid Cohesion Establishment Factor ESCO1 Operates by Substrate-Assisted Catalysis.
Kouznetsova E, Kanno T, ..., Sjögren C, Schüler H
Structure 24 (5) 789-796 [2016-05-03; online 2016-04-21]
Protein Science Facility
PubMed DOI Crossref
Antigen arrays for profiling autoantibody repertoires.
Ayoglu B, Schwenk JM, Nilsson P
Bioanalysis 8 (10) 1105-1126 [2016-05-00; online 2016-04-22]
Protein and Peptide Arrays
PubMed DOI Crossref
TOR Signaling and Nutrient Sensing.
Dobrenel T, Caldana C, ..., Veit B, Meyer C
Annu Rev Plant Biol 67 (-) 261-285 [2016-04-29; online 2016-02-26]
Swedish Metabolomics Centre
PubMed DOI Crossref
Elevated Levels of SOX10 in Serum from Vitiligo and Melanoma Patients, Analyzed by Proximity Ligation Assay.
Blokzijl A, Chen LE, ..., Kamali-Moghaddam M, Hedstrand H
PLoS ONE 11 (4) e0154214 [2016-04-25; online 2016-04-25]
PLA Proteomics
PubMed DOI Crossref
Na+-K+-ATPase, a new class of plasma membrane receptors.
Aperia A, Akkuratov EE, Fontana JM, Brismar H
Am. J. Physiol., Cell Physiol. 310 (7) C491-C495 [2016-04-01; online 2016-01-23]
Advanced Light Microscopy
PubMed DOI Crossref
Single-cell transcriptome analysis of endometrial tissue.
Krjutškov K, Katayama S, ..., Salumets A, Kere J
Hum. Reprod. 31 (4) 844-853 [2016-04-00; online 2016-02-13]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Solution structure of the calmodulin-like C-terminal domain of Entamoeba α-actinin2.
Karlsson G, Persson C, ..., Hedenström M, Backman L
Proteins 84 (4) 461-466 [2016-04-00; online 2016-02-05]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Multiplexed protein profiling by sequential affinity capture.
Ayoglu B, Birgersson E, ..., Nilsson P, Schwenk JM
Proteomics 16 (8) 1251-1256 [2016-04-00; online 2016-03-05]
Biobank Profiling
PubMed DOI Crossref
Fish from Head to Tail: The 9th European Zebrafish Meeting in Oslo.
Griffiths G, Müller F, ..., Press CM, Aleström P
Zebrafish 13 (2) 132-137 [2016-04-00; online 2016-02-09]
Zebrafish
PubMed DOI Crossref
A saposin-lipoprotein nanoparticle system for membrane proteins.
Frauenfeld J, Löving R, ..., Cheng Y, Nordlund P
Nat. Methods 13 (4) 345-351 [2016-04-00; online 2016-03-07]
Protein Science Facility
DOI Crossref
A Facile Synthesis of NODASA-Functionalized Peptide
Naicker T, Albericio F, ..., Kruger H, Govender T
Synlett 27 (11) 1685-1688 [2016-03-30; online 2016-03-30]
Drug Discovery and Development
PubMed DOI Crossref
System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.
Pozniak Y, Balint-Lahat N, ..., Barshack I, Geiger T
Cell Syst 2 (3) 172-184 [2016-03-23; online 2016-03-03]
Tissue Profiling
PubMed DOI Crossref
On-Water Synthesis of Biaryl Sulfonyl Fluorides.
Chinthakindi PK, Kruger HG, ..., Naicker T, Arvidsson PI
J. Org. Chem. 81 (6) 2618-2623 [2016-03-18; online 2016-02-24]
Drug Discovery and Development
PubMed DOI Crossref
Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease.
Khoonsari PE, Häggmark A, ..., Kultima K, Shevchenko G
PLoS ONE 11 (3) e0150672 [2016-03-07; online 2016-03-07]
Biobank Profiling
PubMed DOI Crossref
Disruption of POGZ Is Associated with Intellectual Disability and Autism Spectrum Disorders.
Stessman HA, Willemsen MH, ..., Eichler EE, Kleefstra T
Am. J. Hum. Genet. 98 (3) 541-552 [2016-03-03; online 2016-03-05]
Clinical Genomics
PubMed DOI Crossref
Innovation in the prognostication of chronic lymphocytic leukemia: how far beyond TP53 gene analysis can we go?
Pospisilova S, Sutton LA, ..., Ghia P, European Research Initiative on CLL (ERIC) None
Haematologica 101 (3) 263-265 [2016-03-00; online 2016-03-02]
Clinical Sequencing
PubMed DOI Crossref
Characterization of genetic variation in TLR8 in relation to allergic rhinitis.
Henmyr V, Lind-Halldén C, ..., Säll T, Cardell LO
Allergy 71 (3) 333-341 [2016-03-00; online 2015-11-12]
Mutation Analysis Facility (MAF)
DOI Crossref
Biochemical Conversion of Torrefied Norway Spruce After Pretreatment with Acid or Ionic Liquid
Normark M, Pommer L, ..., Winestrand S, Jönsson LJ
Bioenerg. Res. 9 (1) 355-368 [2016-03-00; online 2015-11-26]
Swedish NMR Centre (SNC)
DOI Crossref
Rapid and straightforward transesterification of sulfonyl carbamates
Isaksson R, Kumpiņa I, Larhed M, Wannberg J
Tetrahedron Letters 57 (13) 1476-1478 [2016-03-00; online 2016-03-00]
Medicinal Chemistry – Lead Identifaction
PubMed DOI Crossref
Oncogene-Induced Senescence in Pituitary Adenomas--an Immunohistochemical Study.
Manojlovic-Gacic E, Skender-Gazibara M, ..., Pontén F, Casar-Borota O
Endocr. Pathol. 27 (1) 1-11 [2016-03-00; online 2015-11-18]
Tissue Profiling
PubMed DOI Crossref
Efficient Isotope Editing of Proteins for Site-Directed Vibrational Spectroscopy.
Peuker S, Andersson H, ..., Erdelyi M, Westenhoff S
J. Am. Chem. Soc. 138 (7) 2312-2318 [2016-02-24; online 2016-02-10]
Swedish NMR Centre (SNC)
DOI Crossref
Stereoselective synthesis towards unnatural proline based amino acids
Makhathini SS, Das SK, ..., Govender T, Naicker T
ARKIVOC 2016 (3) 134 [2016-02-07; online 2016-02-07]
Drug Discovery and Development
PubMed DOI Crossref
Systems Proteomics View of the Endogenous Human Claudin Protein Family.
Liu F, Koval M, ..., Kelleher NL, Baker MS
J. Proteome Res. 15 (2) 339-359 [2016-02-05; online 2015-12-19]
Cell Profiling
PubMed DOI Crossref
Targeted Proteomics Approach for Precision Plant Breeding.
Chawade A, Alexandersson E, ..., Andreasson E, Levander F
J. Proteome Res. 15 (2) 638-646 [2016-02-05; online 2015-12-26]
Bioinformatics Short-term Support and Infrastructure (BILS)
DOI Crossref
Tissue sample stability: thawing effect on multi-organ samples
Torell F, Bennett K, ..., Trygg J, Lundstedt T
Metabolomics 12 (2) - [2016-02-00; online 2015-12-31]
Swedish Metabolomics Centre
PubMed DOI Crossref
The C repressor of the P2 bacteriophage.
Massad T, Papadopolos E, Stenmark P, Damberg P
J. Biomol. NMR 64 (2) 175-180 [2016-02-00; online 2015-12-22]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Diffusion-Controlled Drug Release From the Mesoporous Magnesium Carbonate Upsalite(®).
Zhang P, Zardán Gómez de la Torre T, ..., Bergström CA, Strømme M
J Pharm Sci 105 (2) 657-663 [2016-02-00; online 2015-06-20]
BioMaterial Interactions (BioMat)
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Decreased levels of stem cell factor in subjects with incident coronary events.
Wigren M, Rattik S, ..., Gonçalves I, Nilsson J
J. Intern. Med. 279 (2) 180-191 [2016-02-00; online 2015-10-16]
Clinical Biomarkers
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Metabolites in Blood for Prediction of Bacteremic Sepsis in the Emergency Room.
Kauppi AM, Edin A, ..., Strålin K, Johansson A
PLoS ONE 11 (1) e0147670 [2016-01-22; online 2016-01-22]
Swedish Metabolomics Centre
PubMed DOI Crossref
Backbone Assignment of the MALT1 Paracaspase by Solution NMR.
Unnerståle S, Nowakowski M, ..., Orekhov V, Agback T
PLoS ONE 11 (1) e0146496 [2016-01-20; online 2016-01-20]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light.
Pedmale UV, Huang SS, ..., Ecker JR, Chory J
Cell 164 (1-2) 233-245 [2016-01-14; online 2016-01-05]
Swedish Metabolomics Centre
PubMed DOI Crossref
Simultaneous Multiplexed Measurement of RNA and Proteins in Single Cells.
Darmanis S, Gallant CJ, ..., Westermark B, Landegren U
Cell Rep 14 (2) 380-389 [2016-01-12; online 2016-01-11]
PLA Proteomics Single Cell Proteomics
PubMed DOI Crossref
The 5300-year-old Helicobacter pylori genome of the Iceman.
Maixner F, Krause-Kyora B, ..., Rattei T, Zink A
Science 351 (6269) 162-165 [2016-01-08; online 2016-01-09]
Clinical Genomics
PubMed DOI Crossref
CRISPRz: a database of zebrafish validated sgRNAs.
Varshney GK, Zhang S, ..., Sood R, Burgess SM
Nucleic Acids Res. 44 (D1) D822-D826 [2016-01-04; online 2015-10-04]
Zebrafish
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Characterization and Expression of the Zebrafish qki Paralogs.
Radomska KJ, Sager J, ..., Jazin E, Emilsson LS
PLoS ONE 11 (1) e0146155 [2016-01-04; online 2016-01-04]
Zebrafish
PubMed DOI Crossref
Genetic heterogeneity in rhabdomyosarcoma revealed by SNP array analysis.
Walther C, Mayrhofer M, ..., Gisselsson D, Mertens F
Genes Chromosomes Cancer 55 (1) 3-15 [2016-01-00; online 2015-10-20]
Array and Analysis Facility
PubMed DOI Crossref
Gene-Environment Interplay in Physical, Psychological, and Cognitive Domains in Mid to Late Adulthood: Is APOE a Variability Gene?
Reynolds CA, Gatz M, ..., Pedersen NL, Interplay of Genes and Environment across Multiple Studies (IGEMS) consortium None
Behav. Genet. 46 (1) 4-19 [2016-01-00; online 2015-11-06]
Bioinformatics Compute and Storage (UPPNEX) NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
GREM1 and POLE variants in hereditary colorectal cancer syndromes.
Rohlin A, Eiengård F, ..., Björk J, Nordling M
Genes Chromosomes Cancer 55 (1) 95-106 [2016-01-00; online 2015-10-23]
Swedish NMR Centre (SNC)
PubMed DOI Crossref
Exploring water as building bricks in enzyme engineering.
Hendil-Forssell P, Martinelle M, Syrén PO
Chem. Commun. (Camb.) 51 (97) 17221-17224 [2015-12-18; online 2015-10-02]
Protein Science Facility
PubMed DOI Crossref
Protein profiling reveals consequences of lifestyle choices on predicted biological aging.
Enroth S, Enroth SB, Johansson Å, Gyllensten U
Sci Rep 5 (-) 17282 [2015-12-01; online 2015-12-01]
Clinical Biomarkers
PubMed DOI Crossref
Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.
Paternoster L, Standl M, ..., Weidinger S, EArly Genetics and Lifecourse Epidemiology (EAGLE) Eczema Consortium None
Nat. Genet. 47 (12) 1449-1456 [2015-12-00; online 2015-10-21]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Discovery of New Risk Markers for Ischemic Stroke Using a Novel Targeted Proteomics Chip.
Lind L, Siegbahn A, ..., Sundström J, Ärnlöv J
Stroke 46 (12) 3340-3347 [2015-12-00; online 2015-11-07]
Clinical Biomarkers
PubMed DOI Crossref
Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci.
Gaulton KJ, Ferreira T, ..., Morris AP, DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) Consortium None
Nat. Genet. 47 (12) 1415-1425 [2015-12-00; online 2015-11-10]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Identification of proteins from human permanent erupted enamel.
Castiblanco GA, Rutishauser D, ..., Castellanos JE, Mejía W
Eur. J. Oral Sci. 123 (6) 390-395 [2015-12-00; online 2015-10-04]
Advanced Mass Spectrometry Proteomics
PubMed DOI Crossref
Bacterial diversity along a 2600 km river continuum.
Savio D, Sinclair L, ..., Farnleitner AH, Eiler A
Environ. Microbiol. 17 (12) 4994-5007 [2015-12-00; online 2015-04-30]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Immunocapture strategies in translational proteomics.
Fredolini C, Byström S, ..., Nilsson P, Schwenk JM
Expert Rev Proteomics 13 (1) 83-98 [2015-11-11; online 2015-11-11]
Biobank Profiling Biobank profiling
PubMed DOI Crossref
Meta-analysis identifies seven susceptibility loci involved in the atopic march.
Marenholz I, Esparza-Gordillo J, ..., Henderson AJ, Lee YA
Nat Commun 6 (-) 8804 [2015-11-06; online 2015-11-06]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Quantitative proteogenomics of human pathogens using DIA-MS.
Malmström L, Bakochi A, ..., Karlsson C, Malmström J
J Proteomics 129 (-) 98-107 [2015-11-03; online 2015-09-19]
Bioinformatics Short-term Support and Infrastructure (BILS)
PubMed DOI Crossref
Mutation in CEP63 co-segregating with developmental dyslexia in a Swedish family.
Einarsdottir E, Svensson I, ..., Kere J, Matsson H
Hum. Genet. 134 (11-12) 1239-1248 [2015-11-00; online 2015-09-25]
NGI Uppsala (Uppsala Genome Center)
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Membrane vesicle-mediated release of bacterial RNA.
Sjöström AE, Sandblad L, Uhlin BE, Wai SN
Sci Rep 5 (-) 15329 [2015-10-20; online 2015-10-20]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
The folate-coupled enzyme MTHFD2 is a nuclear protein and promotes cell proliferation.
Gustafsson Sheppard N, Jarl L, ..., Jain M, Nilsson R
Sci Rep 5 (-) 15029 [2015-10-13; online 2015-10-13]
Cell Profiling
PubMed DOI Crossref
A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Nikpay M, Goel A, ..., Farrall M, CARDIoGRAMplusC4D Consortium None
Nat. Genet. 47 (10) 1121-1130 [2015-10-00; online 2015-09-08]
NGI Uppsala (SNP&SEQ Technology Platform)
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The effects of age and gender on plasma levels of 63 cytokines.
Larsson A, Carlsson L, ..., Thulin M, Kamali-Moghaddam M
J. Immunol. Methods 425 (-) 58-61 [2015-10-00; online 2015-06-17]
Clinical Biomarkers
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A New Method for Detecting Associations with Rare Copy-Number Variants.
Tzeng JY, Magnusson PK, ..., Swedish Schizophrenia Consortium None, Szatkiewicz JP
PLoS Genet. 11 (10) e1005403 [2015-10-00; online 2015-10-02]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Trimeric microsomal glutathione transferase 2 displays one third of the sites reactivity.
Ahmad S, Thulasingam M, ..., Haeggström JZ, Rinaldo-Matthis A
Biochim. Biophys. Acta 1854 (10 Pt A) 1365-1371 [2015-10-00; online 2015-06-13]
Protein Science Facility
DOI Crossref
Acid-Base Catalyst Discriminates between a Fructose 6-Phosphate Aldolase and a Transaldolase
Stellmacher L, Sandalova T, ..., Sprenger GA, Samland AK
ChemCatChem 7 (19) 3140-3151 [2015-10-00; online 2015-08-06]
Protein Science Facility
PubMed DOI Crossref
Gene expression profiling of pre-eclamptic placentae by RNA sequencing.
Kaartokallio T, Cervera A, ..., Laivuori H, FINNPEC Core Investigator Group None
Sci Rep 5 (-) 14107 [2015-09-21; online 2015-09-21]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Dormant phages of Helicobacter pylori reveal distinct populations in Europe.
Vale FF, Vadivelu J, ..., Mégraud F, Lehours P
Sci Rep 5 (-) 14333 [2015-09-21; online 2015-09-21]
Clinical Genomics
PubMed DOI Crossref
Genetics and Prognostication in Splenic Marginal Zone Lymphoma: Revelations from Deep Sequencing.
Parry M, Rose-Zerilli MJ, ..., Oscier D, Strefford JC
Clin. Cancer Res. 21 (18) 4174-4183 [2015-09-15; online 2015-03-18]
Clinical sequencing
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Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.
Horvatovich P, Lundberg EK, ..., Paik YK, Hancock WS
J. Proteome Res. 14 (9) 3415-3431 [2015-09-04; online 2015-06-16]
Cell Profiling