Publications

4088 publications

PubMed DOI Crossref
Analysis of the genetic variants associated with circulating levels of sgp130. Results from the IMPROVE study.
Bonomi A, Veglia F, Baldassarre D, ..., Gigante B, on behalf of the IMPROVE study group
Genes Immun. - (-) - [2020-01-14; online 2020-01-14]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
A sample preparation protocol for high throughput immunofluorescence of suspension cells
Backstrom A, Kugel L, Gnann C, ..., Lundberg E, Stadler C
- - (-) - [2020-01-06; online 2020-01-06]
Cell Profiling [Technology development]
PubMed DOI Crossref
Integrative discovery of treatments for high-risk neuroblastoma.
Almstedt E, Elgendy R, Hekmati N, ..., Krona C, Nelander S
pmc
Nat Commun 11 (1) 71 [2020-01-03; online 2020-01-03]
Genome Engineering Zebrafish [Service]
DOI Crossref
Probabilistic cell typing enables fine mapping of closely related cell types in situ
Qian X, Harris KD, Hauling T, ..., Hjerling-Leffler J, Nilsson M
Nat Methods 17 (1) 101-106 [2020-01-00; online 2019-11-18]
In Situ Sequencing (ISS) [Service]
DOI Crossref
Regulation of α-synuclein by chaperones in mammalian cells
Burmann BM, Gerez JA, Matečko-Burmann I, ..., Riek R, Hiller S
Nature 577 (7788) 127-132 [2020-01-00; online 2019-12-04]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Genetic Screening of Plasticity Regulating Nogo-Type Signaling Genes in Migraine.
Smedfors G, Liesecke F, Ran C, ..., Karlsson TE, Carmine Belin A
Brain Sci 10 (1) - [2019-12-20; online 2019-12-20]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Comparison of a Deep Learning Risk Score and Standard Mammographic Density Score for Breast Cancer Risk Prediction
Dembrower K, Liu Y, Azizpour H, ..., Lindholm P, Strand F
Radiology - (-) 190872 [2019-12-17; online 2019-12-17]
PubMed DOI Crossref
Comprehensive longitudinal study of epigenetic mutations in aging.
Wang Y, Karlsson R, Jylhävä J, ..., Almgren M, Hägg S
Clin Epigenetics 11 (1) 187 [2019-12-09; online 2019-12-09]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Depression, GABA, and Age Correlate with Plasma Levels of Inflammatory Markers
Bhandage AK, Cunningham JL, Jin Z, ..., Ekselius L, Birnir B
Int J Mol Sci 20 (24) 6172 [2019-12-06; online 2019-12-06]
PLA and Single Cell Proteomics [Collaborative]
PubMed DOI Crossref
Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.
Nicholls TJ, Spåhr H, Jiang S, ..., Larsson NG, Gustafsson CM
Mol. Cell 76 (5) 784-796.e6 [2019-12-05; online 2019-10-03]
Protein Science Facility (PSF) [Service]
PubMed DOI Crossref
DNA methylation profiles in chronic lymphocytic leukemia patients treated with chemoimmunotherapy.
Tsagiopoulou M, Papakonstantinou N, Moysiadis T, ..., Rosenquist R, Stamatopoulos K
Clin Epigenetics 11 (1) 177 [2019-12-02; online 2019-12-02]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Arteria: An automation system for a sequencing core facility
Dahlberg J, Hermansson J, Sturlaugsson S, ..., Hofmann O, Larsson P
Gigascience 8 (12) - [2019-12-01; online 2019-12-11]
NGI Uppsala (SNP&SEQ Technology Platform) [Technology development]
DOI Crossref
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
Rojas-Macias MA, Mariethoz J, Andersson P, ..., Lisacek F, Karlsson NG
Nat Commun 10 (1) - [2019-12-00; online 2019-07-22]
Bioinformatics Support and Infrastructure [Technology development]
DOI Crossref
Dysregulated autophagy in muscle precursor cells from humans with type 2 diabetes
Henriksen TI, Wigge LV, Nielsen J, ..., Sandri M, Scheele C
Sci Rep 9 (1) - [2019-12-00; online 2019-06-03]
Systems Biology [Collaborative]
PubMed DOI Crossref
Meckel syndrome: Clinical and mutation profile in six fetuses.
Radhakrishnan P, Nayak SS, Shukla A, Lindstrand A, Girisha KM
Clin. Genet. 96 (6) 560-565 [2019-12-00; online 2019-08-21]
Clinical Genomics Stockholm [Service]
DOI Crossref
The genomics of major psychiatric disorders in a large pedigree from Northern Sweden
Szatkiewicz J, Crowley JJ, Adolfsson AN, ..., Adolfsson R, Sullivan PF
Transl Psychiatry 9 (1) - [2019-12-00; online 2019-02-04]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Mercury methylating microbial communities of boreal forest soils
Xu J, Buck M, Eklöf K, ..., Bertilsson S, Bravo AG
Sci Rep 9 (1) - [2019-12-00; online 2019-01-24]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Undifferentiated pleomorphic sarcomas with PRDM10 fusions have a distinct gene expression profile
Hofvander J, Puls F, Pillay N, ..., Nilsson J, Mertens F
J. Pathol 249 (4) 425-434 [2019-12-00; online 2019-08-27]
Clinical Genomics Lund [Service]
DOI Crossref
A microfluidic platform towards automated multiplexed in situ sequencing
Maïno N, Hauling T, Cappi G, ..., Dupouy DG, Nilsson M
Sci Rep 9 (1) - [2019-12-00; online 2019-03-05]
In Situ Sequencing (ISS) [Service]
DOI Crossref
A bacterial assay for rapid screening of IAA catabolic enzymes
Brunoni F, Collani S, Šimura J, ..., Bellini C, Ljung K
Plant Methods 15 (1) - [2019-12-00; online 2019-11-04]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Genetic variation in CADM2 as a link between psychological traits and obesity
Morris J, Bailey MES, Baldassarre D, ..., Smith DJ, Strawbridge RJ
Sci Rep 9 (1) - [2019-12-00; online 2019-05-14]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
Cell 179 (7) 1647-1660.e19 [2019-12-00; online 2019-12-00]
In Situ Sequencing (ISS) [Service]
PubMed DOI Crossref
A Mitochondrial LYR Protein Is Required for Complex I Assembly.
Ivanova A, Gill-Hille M, Huang S, ..., Whelan J, Murcha MW
pmc
Plant Physiol. 181 (4) 1632-1650 [2019-12-00; online 2019-10-10]
Chemical Proteomics & Proteogenomics [Collaborative]
DOI Crossref
Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC
Nirwan N, Itoh Y, Singh P, ..., Amunts A, Saikrishnan K
Nat Commun 10 (1) - [2019-12-00; online 2019-07-11]
Cryo-EM [Service]
DOI Crossref
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
Cell 179 (7) 1647-1660.e19 [2019-12-00; online 2019-12-00]
Bioinformatics Long-term Support WABI [Collaborative]
PubMed DOI Crossref
MYCN-enhanced Oxidative and Glycolytic Metabolism Reveals Vulnerabilities for Targeting Neuroblastoma.
Oliynyk G, Ruiz-Pérez MV, Sainero-Alcolado L, ..., Lehtiö J, Arsenian-Henriksson M
pmc
iScience 21 (-) 188-204 [2019-11-22; online 2019-10-11]
Chemical Proteomics & Proteogenomics [Collaborative]
DOI Crossref
Genetic predisposition to mosaic Y chromosome loss in blood
Thompson DJ, None , Genovese G, ..., None , None
Nature 575 (7784) 652-657 [2019-11-20; online 2019-11-20]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
The genomic footprint of sexual conflict
Sayadi A, Martinez Barrio A, Immonen E, ..., Nystedt B, Arnqvist G
Nat Ecol Evol - (-) - [2019-11-18; online 2019-11-18]
NGI Uppsala (Uppsala Genome Center) [Collaborative]
DOI Crossref
On-demand virtual research environments using microservices
Capuccini M, Larsson A, Carone M, ..., Toor S, Spjuth O
- 5 (-) e232 [2019-11-11; online 2019-11-11]
Bioinformatics Support and Infrastructure [Collaborative]
PubMed DOI Crossref
Viromics Reveal a Number of Novel RNA Viruses in Swedish Mosquitoes.
Öhlund P, Hayer J, Lundén H, Hesson JC, Blomström AL
Viruses 11 (11) - [2019-11-05; online 2019-11-05]
NGI Uppsala (Uppsala Genome Center) [Service]
An empirical study of the relation between network architecture and complexity
Konuk E, Smith K
ICCV - (-) - [2019-11-05; online 2019-11-05]
DOI Crossref
A genomic inference of the White Plymouth Rock genealogy
Guo Y, Lillie M, Zan Y, ..., Siegel PB, Carlborg Ö
Poult. Sci. 98 (11) 5272-5280 [2019-11-01; online 2019-07-15]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
A revised solid-state NMR method to assess the crystallinity of cellulose
Sparrman T, Svenningsson L, Sahlin-Sjövold K, ..., Westman G, Bernin D
Cellulose 26 (17) 8993-9003 [2019-11-00; online 2019-09-03]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
PIN-driven auxin transport emerged early in streptophyte evolution
Skokan R, Medvecká E, Viaene T, ..., Petrášek J, Friml J
NPLANTS 5 (11) 1114-1119 [2019-11-00; online 2019-11-11]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Modulation of Structural Heterogeneity Controls Phytochrome Photoswitching
Gustavsson E, Isaksson L, Persson C, ..., Orekhov V, Westenhoff S
Biophysical Journal - (-) - [2019-11-00; online 2019-11-00]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Challenges in the Multivariate Analysis of Mass Cytometry Data: The Effect of Randomization.
Papoutsoglou G, Lagani V, Schmidt A, ..., Tegnér J, Tsamardinos I
Cytometry A 95 (11) 1178-1190 [2019-11-00; online 2019-11-06]
Mass Cytometry [Service]
DOI Crossref
Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis
Dobie R, Wilson-Kanamori JR, Henderson BEP, ..., Marioni JC, Henderson NC
Cell Rep 29 (7) 1832-1847.e8 [2019-11-00; online 2019-11-00]
Eukaryotic Single Cell Genomics (ESCG) [Service]
DOI Crossref
A revised solid-state NMR method to assess the crystallinity of cellulose
Sparrman T, Svenningsson L, Sahlin-Sjövold K, ..., Westman G, Bernin D
Cellulose 26 (17) 8993-9003 [2019-11-00; online 2019-09-03]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Tuning drug release from polyoxazoline-drug conjugates
Harris JM, Bentley MD, Moreadith RW, ..., Dizman B, Nordstierna L
European Polymer Journal 120 (-) 109241 [2019-11-00; online 2019-11-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Transcriptomic Profiling of Skeletal Muscle Adaptations to Exercise and Inactivity
Pillon NJ, Gabriel BM, Dollet L, ..., Krook A, Zierath JR
- - (-) - [2019-10-22; online 2019-10-22]
Bioinformatics Support and Infrastructure [Service]
DOI Crossref
Genetic architecture of subcortical brain structures in 38,851 individuals
Satizabal CL, Adams HHH, Hibar DP, ..., Seshadri S, Ikram MA
Nat Genet - (-) - [2019-10-21; online 2019-10-21]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
The SH3 domains of the protein kinases ITK and LCK compete for adjacent sites on T cell–specific adapter protein
Andersen TCB, Kristiansen PE, Huszenicza Z, ..., Andreotti AH, Spurkland A
J. Biol. Chem. 294 (42) 15480-15494 [2019-10-18; online 2019-09-04]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Dynamic Nanocellulose Networks for Thermoset-like yet Recyclable Plastics with a High Melt Stiffness and Creep Resistance
Peterson A, Östergren I, Lotsari A, ..., Boldizar A, Müller C
Biomacromolecules 20 (10) 3924-3932 [2019-10-14; online 2019-09-17]
Cryo-EM [Service]
DOI Crossref
Apolipoprotein E impairs amyloid‐β fibril elongation and maturation
Islam T, Gharibyan AL, Golchin SA, ..., Olofsson L, Olofsson A
FEBS J - (-) - [2019-10-09; online 2019-10-09]
Cryo-EM [Service]
DOI Crossref
SynQuant: an automatic tool to quantify synapses from microscopy images
Wang Y, Wang C, Ranefall P, ..., Tian L, Yu G
- - (-) - [2019-10-09; online 2019-10-09]
BioImage Informatics [Collaborative]
DOI Crossref
Interoperable and scalable data analysis with microservices: applications in metabolomics
Emami Khoonsari P, Moreno P, Bergmann S, ..., Kultima K, Spjuth O
- 35 (19) 3752-3760 [2019-10-01; online 2019-03-09]
Bioinformatics Support and Infrastructure [Collaborative]
DOI Crossref
Skeletal Mineralization in Association with Type X Collagen Expression Is an Ancestral Feature for Jawed Vertebrates
Debiais-Thibaud M, Simion P, Ventéo S, ..., Mazan S, Haitina T
- 36 (10) 2265-2276 [2019-10-01; online 2019-07-04]
Genome Engineering Zebrafish [Service]
DOI Crossref
Industrial wastewater treatment plant enriches antibiotic resistance genes and alters the structure of microbial communities
Bengtsson-Palme J, Milakovic M, Švecová H, ..., Grabic R, Udikovic-Kolic N
Water Research 162 (-) 437-445 [2019-10-00; online 2019-10-00]
Systems Biology [Collaborative]
DOI Crossref
Genetic basis and timing of a major mating system shift in Capsella
Bachmann JA, Tedder A, Laenen B, ..., Castric V, Slotte T
New Phytol 224 (1) 505-517 [2019-10-00; online 2019-08-00]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Real time MRI to elucidate the functionality of coating films intended for modified release
Bernin D, Marucci M, Boissier C, ..., Olsson U, Abrahmsén-Alami S
Journal of Controlled Release 311-312 (-) 117-124 [2019-10-00; online 2019-10-00]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Cell generation dynamics underlying naive T-cell homeostasis in adult humans.
Mold JE, Réu P, Olin A, ..., Brodin P, Frisén J
PLoS Biol. 17 (10) e3000383 [2019-10-00; online 2019-10-29]
Mass Cytometry [Collaborative]
DOI Crossref
Whole genome sequencing of apparently mutation-negative MEN1 patients
Backman S, Bajic D, Crona J, ..., Skogseid B, Stålberg P
- - (-) - [2019-10-00; online 2019-10-00]
Bioinformatics Support and Infrastructure [Service]
PubMed DOI Crossref
A clonal expression biomarker associates with lung cancer mortality.
Biswas D, Birkbak NJ, Rosenthal R, ..., Swanton C, TRACERx Consortium
Nat. Med. 25 (10) 1540-1548 [2019-10-00; online 2019-10-07]
Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Fam83F induces p53 stabilisation and promotes its activity.
Salama M, Benitez-Riquelme D, Elabd S, ..., Davidson G, Blattner C
pmc
Cell Death Differ. 26 (10) 2125-2138 [2019-10-00; online 2019-01-28]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Ataxia in Patients With Bi-Allelic NFASC Mutations and Absence of Full-Length NF186
Kvarnung M, Shahsavani M, Taylan F, ..., Lindstrand A, Falk A
Front Genet 10 (-) - [2019-09-24; online 2019-09-24]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
The TGFB2-AS1 lncRNA Regulates TGF-β Signaling by Modulating Corepressor Activity.
Papoutsoglou P, Tsubakihara Y, Caja L, ..., Heldin CH, Moustakas A
Cell Rep 28 (12) 3182-3198.e11 [2019-09-17; online 2019-09-19]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Multiplexed analysis of the secretin-like GPCR-RAMP interactome.
Lorenzen E, Dodig-Crnković T, Kotliar IB, ..., Schwenk JM, Sakmar TP
pmc
Sci Adv 5 (9) eaaw2778 [2019-09-00; online 2019-09-18]
Plasma Profiling [Collaborative]
DOI Crossref
Impact of demography on linked selection in two outcrossing Brassicaceae species
Mattila TM, Laenen B, Horvath R, ..., Savolainen O, Slotte T
Ecol Evol 9 (17) 9532-9545 [2019-09-00; online 2019-08-13]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
FLT3N676K drives acute myeloid leukemia in a xenograft model of KMT2A-MLLT3 leukemogenesis
Hyrenius-Wittsten A, Pilheden M, Falqués-Costa A, ..., Järås M, Hagström-Andersson AK
Leukemia 33 (9) 2310-2314 [2019-09-00; online 2019-04-05]
Clinical Genomics Lund [Service]
DOI Crossref
Dimerization of 9,10-anthraquinone-2,7-Disulfonic acid (AQDS)
Wiberg C, Carney TJ, Brushett F, Ahlberg E, Wang E
Electrochimica Acta 317 (-) 478-485 [2019-09-00; online 2019-09-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Combined mRNA and protein single cell analysis in a dynamic cellular system using SPARC
Reimegård J, Danielsson M, Tarbier M, ..., Friedländer MR, Gallant CJ
- - (-) - [2019-08-28; online 2019-08-28]
PLA and Single Cell Proteomics [Technology development]
PubMed DOI Crossref
Array-Based Profiling of Proteins and Autoantibody Repertoires in CSF.
Pin E, Sjöberg R, Andersson E, ..., Nilsson P, Månberg A
Methods Mol. Biol. 2044 (-) 303-318 [2019-08-23; online 2019-08-23]
Autoimmunity Profiling [Technology development]
DOI Crossref
Nucleation of an Activating Conformational Change by a Cation−π Interaction
Rogne P, Andersson D, Grundström C, ..., Linusson A, Wolf-Watz M
Biochemistry 58 (32) 3408-3412 [2019-08-13; online 2019-07-24]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Molecular insights into hypomineralized enamel
Malmberg P, Norén JG, Bernin D
Eur J Oral Sci 127 (4) 340-346 [2019-08-00; online 2019-04-29]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Systematic Development of Sandwich Immunoassays for the Plasma Secretome.
Häussler RS, Bendes A, Iglesias M, ..., Qundos U, Schwenk JM
Proteomics 19 (15) e1900008 [2019-08-00; online 2019-07-22]
Plasma Profiling [Technology development]
DOI Crossref
Joint Image Deconvolution and Separation Using Mixed Dictionaries
Siadat M, Aghazadeh N, Akbarifard F, Brismar H, Oktem O
IEEE Trans. on Image Process. 28 (8) 3936-3945 [2019-08-00; online 2019-08-00]
Advanced Light Microscopy (ALM) [Service]
DOI Crossref
Boreal tree species affect soil organic matter composition and saprotrophic mineralization rates
Segura JH, Nilsson MB, Sparrman T, ..., Tolu J, Öquist MG
Plant Soil 441 (1-2) 173-190 [2019-08-00; online 2019-05-24]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Estrogen deprivation triggers an immunosuppressive phenotype in breast cancer cells
Hühn D, Martí-Rodrigo P, Mouron S, ..., Carreras-Puigvert J, Fernandez-Capetillo O
- - (-) - [2019-07-25; online 2019-07-25]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Evolved for success in novel environments: The round goby genome
Adrian-Kalchhauser I, Blomberg A, Larsson T, ..., Schloissnig S, Winkler S
- - (-) - [2019-07-19; online 2019-07-19]
Bioinformatics Support and Infrastructure [Collaborative]
DOI Crossref
Systems-level immunomonitoring using self-sampled capillary blood
Josyula VS, Lakshmikanth T, Mikes J, Chen Y, Brodin P
- - (-) - [2019-07-08; online 2019-07-08]
Mass Cytometry [Technology development]
PubMed DOI Crossref
Screening a Resource of Recombinant Protein Fragments for Targeted Proteomics.
Edfors F, Forsström B, Vunk H, ..., Schwenk JM, Uhlen M
J. Proteome Res. 18 (7) 2706-2718 [2019-07-05; online 2019-06-07]
Plasma Profiling [Technology development]
PubMed DOI Crossref
Seeking the ultimate challenge.
Brodin P
Nat Med - (-) - [2019-07-03; online 2019-07-03]
DOI Crossref
Mutation dynamics of CpG dinucleotides during a recent event of vertebrate diversification
Pértille F, Da Silva VH, Johansson AM, ..., Jensen P, Guerrero-Bosagna C
Epigenetics 14 (7) 685-707 [2019-07-03; online 2019-05-09]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Serum metabolite profiles of habitual diet: evaluation by 1H-nuclear magnetic resonance analysis
Lindqvist HM, Rådjursöga M, Malmodin D, Winkvist A, Ellegård L
Am J Clin Nutr 110 (1) 53-62 [2019-07-01; online 2019-05-25]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Epigenome-wide association study of lung function level and its change.
Imboden M, Wielscher M, Rezwan FI, ..., Jarvis D, Probst-Hensch NM
pmc
Eur. Respir. J. 54 (1) - [2019-07-00; online 2019-07-04]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Cryo-EM structure of the activated RET signaling complex reveals the importance of its cysteine-rich domain
Bigalke JM, Aibara S, Roth R, ..., Amunts A, Sandmark J
Sci Adv 5 (7) eaau4202 [2019-07-00; online 2019-07-31]
Cryo-EM [Service]
PubMed DOI Crossref
TRAF6 function as a novel co-regulator of Wnt3a target genes in prostate cancer
Aripaka K, Gudey SK, Zang G, ..., von Hofsten J, Landström M
EBioMedicine 45 (-) 192-207 [2019-07-00; online 2019-07-00]
PLA and Single Cell Proteomics [Service]
PubMed DOI Crossref
Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
Floyd JS, Bloch KM, Brody JA, ..., Alfirevic A, PREDICTION-ADR Consortium and EUDRAGENE
PLoS ONE 14 (6) e0218115 [2019-06-26; online 2019-06-26]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
A Role for the VPS Retromer in Brucella Intracellular Replication Revealed by Genomewide siRNA Screening
Casanova A, Low SH, Québatte M, ..., Ben-Tekaya H, Dehio C
mSphere 4 (3) - [2019-06-26; online 2019-06-26]
PubMed DOI Crossref
A Call for Blood-In Human Immunology.
Brodin P, Duffy D, Quintana-Murci L
Immunity 50 (6) 1335-1336 [2019-06-18; online 2019-06-20]
Mass Cytometry [Technology development]
DOI Crossref
Recombinant dermatan sulfate is a potent activator of heparin cofactor II-dependent inhibition of thrombin
Tykesson E, Maccarana M, Thorsson H, ..., Ellervik U, Westergren-Thorsson G
- 29 (6) 446-451 [2019-06-01; online 2019-04-23]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Nitrogen dynamics of decomposing Scots pine needle litter depends on colonizing fungal species
Baskaran P, Ekblad A, Soucémarianadin LN, ..., Schleucher J, Lindahl BD
FEMS Microbiol. Ecol. 95 (6) - [2019-06-01; online 2019-04-25]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Assembly mechanisms of the bacterial cytoskeletal protein FilP
Javadi A, Söderholm N, Olofsson A, Flärdh K, Sandblad L
Life Sci. Alliance 2 (3) e201800290 [2019-06-00; online 2019-06-26]
Cryo-EM [Collaborative]
PubMed DOI Crossref
Can markers of biological age predict dependency in old age?
Jylhävä J, Jiang M, Foebel AD, Pedersen NL, Hägg S
pmc
Biogerontology 20 (3) 321-329 [2019-06-00; online 2019-01-21]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
The effects of male social environment on sperm phenotype and genome integrity
Silva WTAF, Sáez‐Espinosa P, Torijo‐Boix S, ..., Gómez‐Torres MJ, Immler S
J Evol Biol 32 (6) 535-544 [2019-06-00; online 2019-03-25]
Genome Engineering Zebrafish [Service]
DOI Crossref
β-Mannosidosis caused by a novel homozygous intragenic inverted duplication in MANBA
Blomqvist M, Smeland MF, Lindgren J, ..., Riise Stensland HMF, Asin-Cayuela J
Cold Spring Harb Mol Case Stud 5 (3) a003954 [2019-06-00; online 2019-03-18]
Clinical Genomics Stockholm [Service]
DOI Crossref
Toxic Activation of an AAA+ Protease by the Antibacterial Drug Cyclomarin A
Maurer M, Linder D, Franke KB, ..., Bukau B, Mogk A
Cell Chem Biol - (-) - [2019-06-00; online 2019-06-00]
Cryo-EM [Service]
PubMed DOI Crossref
Plasma protein profiling reveals candidate biomarkers for multiple sclerosis treatment.
Bedri SK, Nilsson OB, Fink K, ..., Grönlund H, Glaser A
pmc
PLoS ONE 14 (5) e0217208 [2019-05-29; online 2019-05-29]
Plasma Profiling [Collaborative]
PubMed DOI Crossref
Genetical Genomics of Tonic Immobility in the Chicken.
Fogelholm J, Inkabi S, Höglund A, ..., Henriksen R, Wright D
Genes 10 (5) - [2019-05-07; online 2019-05-07]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Pervasive hybridizations in the history of wheat relatives.
Glémin S, Scornavacca C, Dainat J, ..., David J, Ranwez V
pmc
Sci Adv 5 (5) eaav9188 [2019-05-00; online 2019-05-01]
Bioinformatics Support and Infrastructure [Service]
PubMed DOI Crossref
B cell profiling in malaria reveals expansion and remodelling of CD11c+ B cell subsets.
Sundling C, Rönnberg C, Yman V, ..., Persson KE, Färnert A
JCI Insight 5 (-) - [2019-04-02; online 2019-04-02]
Mass Cytometry [Service]
DOI Crossref
Selection for longer lived sperm within ejaculate reduces reproductive ageing in offspring
Alavioon G, Cabrera Garcia A, LeChatelier M, Maklakov AA, Immler S
Evolution Letters 3 (2) 198-206 [2019-04-00; online 2019-02-14]
Genome Engineering Zebrafish [Service]
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Post‐glacial colonization routes coincide with a life‐history breakpoint along a latitudinal gradient
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Leukocytosis is associated with retinopathy of prematurity in extremely preterm infants.
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Acta Paediatr. - (-) - [2019-03-28; online 2019-03-28]
DOI Crossref
Characterization of Double Leached Waelz Oxide for Identification of Fluoride Mineral
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Metals 9 (3) 361 [2019-03-20; online 2019-03-20]
Swedish NMR Centre (SNC) [Service]
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Detecting selection signatures in three Iranian sheep breeds
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Individual and stable autoantibody repertoires in healthy individuals.
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Autoimmunity Profiling [Collaborative]
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Chromosomal inversions associated with environmental adaptation in honeybees
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Mol Ecol 28 (6) 1358-1374 [2019-03-00; online 2018-12-21]
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Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.
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Immune-informed mucin hydrogels evade fibrotic foreign body response in vivo
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Cell Profiling [Service]
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Zinc depletion does not necessarily induce ribosome hibernation in mycobacteria
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Proc Natl Acad Sci USA 116 (7) 2395-2397 [2019-02-12; online 2019-01-25]
Cryo-EM [Service]
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Spatiotemporal dissection of the cell cycle regulated human proteome
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Cell Profiling [Collaborative]
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Interplay between Conformational Entropy and Solvation Entropy in Protein–Ligand Binding
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J. Am. Chem. Soc. 141 (5) 2012-2026 [2019-02-06; online 2019-01-08]
Swedish NMR Centre (SNC) [Service]
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Disentangling the genetics of lean mass.
Karasik D, Zillikens MC, Hsu YH, ..., Kiel DP, Ohlsson C
Am. J. Clin. Nutr. 109 (2) 276-287 [2019-02-01; online 2019-02-06]
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Titanium release in peri-implantitis
Pettersson M, Pettersson J, Johansson A, Molin Thorén M
J Oral Rehabil 46 (2) 179-188 [2019-02-00; online 2018-11-16]
Cryo-EM [Service]
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Two Basidiomycete Fungi in the Cortex of Wolf Lichens
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Current Biology 29 (3) 476-483.e5 [2019-02-00; online 2019-02-00]
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A Chemical Screen Identifies Compounds Limiting the Toxicity of C9ORF72 Dipeptide Repeats
Corman A, Jung B, Häggblad M, ..., Carreras-Puigvert J, Fernandez-Capetillo O
Cell Chem Biol 26 (2) 235-243.e5 [2019-02-00; online 2019-02-00]
Chemical Biology Consortium Sweden (CBCS) [Service]
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Low Molecular Mass Myocardial Hyaluronan in Human Hypertrophic Cardiomyopathy
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Cells 8 (2) 97 [2019-01-29; online 2019-01-29]
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Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based setting.
Chauhan G, Adams HHH, Satizabal CL, ..., Debette S, Stroke Genetics Network (SiGN), the International Stroke Genetics Consortium (ISGC), METASTROKE, Alzheimer's Disease Genetics Consortium (ADGC), and the Neurology Working Group of the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium
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Neurology - (-) - [2019-01-16; online 2019-01-16]
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Analysis of colony phase variation switch in Acinetobacter baumannii clinical isolates
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PLoS ONE 14 (1) e0210082 [2019-01-04; online 2019-01-04]
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Mosaic loss of chromosome Y in leukocytes matters
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Nat Genet 51 (1) 4-7 [2019-01-00; online 2018-10-29]
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Tissue-specific hormone profiles from woody poplar roots under bending stress
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Physiol Plantarum 165 (1) 101-113 [2019-01-00; online 2018-10-15]
Swedish Metabolomics Centre (SMC) [Service]
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Introducing ribosomal tandem repeat barcoding for fungi
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Mol Ecol Resour 19 (1) 118-127 [2019-01-00; online 2018-10-24]
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Auxin Function in the Brown Alga Dictyota dichotoma
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Cryo-EM structure of the yeast respiratory supercomplex
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B cell alterations during BAFF inhibition with belimumab in SLE.
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Deep Learning in Image Cytometry: A Review
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Cotranslational Folding of a Pentarepeat β-Helix Protein.
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Carbon’s Three-Center, Four-Electron Tetrel Bond, Treated Experimentally
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J. Am. Chem. Soc. - (-) - [2018-12-07; online 2018-12-07]
Swedish NMR Centre (SNC) [Service]
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Porous Cellulose Nanofiber-Based Microcapsules for Biomolecular Sensing
Paulraj T, Wennmalm S, Riazanova AV, ..., Crespo GA, Svagan AJ
ACS Appl. Mater. Interfaces 10 (48) 41146-41154 [2018-12-05; online 2018-11-09]
Advanced Light Microscopy (ALM) [Collaborative]
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Crystal Structures and Cytotoxicity of ent-Kaurane-Type Diterpenoids from Two Aspilia Species
Yaouba S, Valkonen A, Coghi P, ..., Erdélyi M, Yenesew A
Molecules 23 (12) 3199 [2018-12-04; online 2018-12-04]
Swedish NMR Centre (SNC) [Service]
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A Chemical Screen Identifies Compounds Limiting the Toxicity of C9ORF72 Dipeptide Repeats
Corman A, Jung B, Häggblad M, ..., Carreras-Puigvert J, Fernandez-Capetillo O
Cell Chem Biol - (-) - [2018-12-00; online 2018-12-00]
Chemical Biology Consortium Sweden (CBCS) [Service]
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Structure of a functional obligate complex III2IV2 respiratory supercomplex from Mycobacterium smegmatis
Wiseman B, Nitharwal RG, Fedotovskaya O, ..., Brzezinski P, Högbom M
Nat Struct Mol Biol 25 (12) 1128-1136 [2018-12-00; online 2018-12-05]
Cryo-EM [Service]
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Intelligent image-based in situ single-cell isolation
Brasko C, Smith K, Molnar C, ..., Tamas G, Horvath P
Nat Commun 9 (1) - [2018-12-00; online 2018-01-15]
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Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins
Spåhr H, Chia T, Lingford JP, ..., Filipovska A, Rackham O
Nat Commun 9 (1) - [2018-12-00; online 2018-06-07]
Protein Science Facility (PSF) [Service]
DOI Crossref
A Chemical Screen Identifies Compounds Limiting the Toxicity of C9ORF72 Dipeptide Repeats
Corman A, Jung B, Häggblad M, ..., Carreras-Puigvert J, Fernandez-Capetillo O
Cell Chem Biol - (-) - [2018-12-00; online 2018-12-00]
Cell Profiling [Service]
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The shape of the ribosome exit tunnel affects cotranslational protein folding
Kudva R, Tian P, Pardo-Avila F, ..., Bernstein HD, von Heijne G
Elife 7 (-) - [2018-11-26; online 2018-11-26]
Cryo-EM [Service]
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Modelling of zero-inflation improves inference of metagenomic gene count data
Jonsson V, Österlund T, Nerman O, Kristiansson E
Stat Methods Med Res - (-) 096228021881135 [2018-11-25; online 2018-11-25]
Systems Biology [Technology development]
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New tools for automated high-resolution cryo-EM structure determination in RELION-3
Zivanov J, Nakane T, Forsberg BO, ..., Lindahl E, Scheres SH
Elife 7 (-) - [2018-11-09; online 2018-11-09]
Cryo-EM [Technology development]
DOI Crossref
Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens
Srinivas V, Lebrette H, Lundin D, ..., Sjöberg BM, Högbom M
Nature 563 (7731) 416-420 [2018-11-00; online 2018-10-31]
Chemical Proteomics & Proteogenomics [Collaborative]
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XLSY: Extra-Large NMR Spectroscopy
Pustovalova Y, Mayzel M, Orekhov VY
Angew. Chem. Int. Ed. 57 (43) 14043-14045 [2018-10-22; online 2018-10-01]
Swedish NMR Centre (SNC) [Technology development]
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Halogen Bond Asymmetry in Solution
Lindblad S, Mehmeti K, Veiga AX, ..., Gräfenstein J, Erdélyi M
J. Am. Chem. Soc. 140 (41) 13503-13513 [2018-10-17; online 2018-09-20]
Swedish NMR Centre (SNC) [Service]
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An orthotopic glioblastoma animal model suitable for high-throughput screenings
Pudelko L, Edwards S, Balan M, ..., Helleday T, Bräutigam L
Neuro Oncol 20 (11) 1475-1484 [2018-10-09; online 2018-05-10]
Advanced Light Microscopy (ALM) [Collaborative]
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The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water
Orman-Ligeza B, Morris EC, Parizot B, ..., Beeckman T, Draye X
Current Biology 28 (19) 3165-3173.e5 [2018-10-00; online 2018-10-00]
Swedish Metabolomics Centre (SMC) [Service]
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Using Scipion for stream image processing at Cryo-EM facilities
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Journal of Structural Biology - (-) - [2018-10-00; online 2018-10-00]
Cryo-EM [Technology development]
PubMed DOI Crossref
Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.
Evangelou E, Warren HR, Mosen-Ansorena D, ..., Caulfield MJ, Million Veteran Program
Nat. Genet. 50 (10) 1412-1425 [2018-10-00; online 2018-09-17]
Bioinformatics Compute and Storage [Service]
PubMed DOI Crossref
Introducing ribosomal tandem repeat barcoding for fungi
Wurzbacher C, Larsson E, Bengtsson-Palme J, ..., Kagami M, Nilsson RH