Publications

3086 publications

DOI Crossref
Using Scipion for stream image processing at Cryo-EM facilities
Gómez-Blanco J, de la Rosa-Trevín JM, ..., Conesa P, Carazo JM
Journal of Structural Biology - (-) - [2018-10-00; online 2018-10-00]
Cryo-EM [Technology development]
DOI Crossref
Genetic basis and timing of a major mating system shift in Capsella
Bachmann JA, Tedder A, ..., Castric V, Slotte T
- - (-) - [2018-09-24; online 2018-09-24]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Detection of autoantibodies against cancer-testis antigens in non-small cell lung cancer
Djureinovic D, Dodig-Crnkovic T, ..., Schwenk JM, Micke P
Lung Cancer - (-) - [2018-09-00; online 2018-09-00]
Autoimmunity Profiling [Service]
DOI Crossref
Reduced expression of PROX1 transitions glioblastoma cells into a mesenchymal gene expression subtype
Goudarzi KM, Espinoza JA, ..., Lindström MS, Hägerstrand D
Cancer Res - (-) canres.0320.2018 [2018-08-22; online 2018-08-22]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Autoantibody profiling in intraocular fluid of patients with uveitis.
Ten Berge JC, Schreurs MW, van Rosmalen J, Rothova A
Exp. Eye Res. 176 (-) 141-146 [2018-07-10; online 2018-07-10]
Autoimmunity Profiling [Service]
PubMed DOI Crossref
High similarity in the microbiota of cold-water sponges of the Genus
Cárdenas CA, González-Aravena M, ..., Malmberg M, Bongcam-Rudloff E
PeerJ 6 (-) e4935 [2018-06-07; online 2018-06-07]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Combined BET bromodomain and CDK2 inhibition in MYC-driven medulloblastoma
Bolin S, Borgenvik A, ..., Weishaupt H, Swartling FJ
Oncogene 37 (21) 2850-2862 [2018-05-00; online 2018-03-07]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
Molecular barcoding of viral vectors enables mapping and optimization of mRNAtrans-splicing
Davidsson M, Díaz-Fernández P, ..., Lundberg C, Björklund T
RNA 24 (5) 673-687 [2018-05-00; online 2018-01-31]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Wray NR, Ripke S, ..., Sullivan PF, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium
Nat. Genet. 50 (5) 668-681 [2018-05-00; online 2018-04-26]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Introducing ribosomal tandem repeat barcoding for fungi
Wurzbacher C, Larsson E, ..., Kagami M, Nilsson RH
- - (-) - [2018-04-28; online 2018-04-28]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Ezerskyte M, Paredes JA, ..., Scicchitano DA, Dreij K
Proc. Natl. Acad. Sci. U.S.A. - (-) - [2018-04-17; online 2018-04-17]
Bioinformatics Support and Infrastructure [Service]
DOI Crossref
Active and inactive β1 integrins segregate into distinct nanoclusters in focal adhesions
Spiess M, Hernandez-Varas P, ..., Lakadamyali M, Strömblad S
J. Cell Biol. - (-) jcb.201707075 [2018-04-09; online 2018-04-09]
Advanced Light Microscopy (ALM) [Collaborative]
DOI Crossref
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Boerema AP, Aibara S, ..., Lindahl E, Amunts A
NPLANTS 4 (4) 212-217 [2018-04-00; online 2018-04-02]
Cryo-EM [Service]
PubMed DOI Crossref
ILF2 and ILF3 are autoantigens in canine systemic autoimmune disease.
Bremer HD, Landegren N, ..., Kämpe O, Hansson-Hamlin H
Sci Rep 8 (1) 4852 [2018-03-19; online 2018-03-19]
Autoimmunity Profiling [Service]
DOI Crossref
Sexual dimorphism in the width of the mouse synaptonemal complex
Agostinho A, Kouznetsova A, ..., Brismar H, Höög C
J Cell Sci 131 (5) jcs212548 [2018-03-01; online 2018-02-02]
Advanced Light Microscopy (ALM) [Collaborative]
PubMed DOI Crossref
Genetic variants influencing phenotypic variance heterogeneity.
Ek WE, Rask-Andersen M, ..., Gyllensten U, Johansson Å
Hum. Mol. Genet. 27 (5) 799-810 [2018-03-01; online 2018-01-13]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
The
Hagberg N, Joelsson M, ..., Bryceson YT, Rönnblom L
Ann. Rheum. Dis. - (-) - [2018-02-23; online 2018-02-23]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
In Situ Target Engagement Studies in Adherent Cells
Axelsson H, Almqvist H, ..., Lundbäck T, Seashore-Ludlow B
ACS Chem. Biol. - (-) - [2018-02-21; online 2018-02-21]
Chemical Biology Consortium Sweden (CBCS) [Technology development]
PubMed DOI Crossref
Kynurenic Acid and Gpr35 Regulate Adipose Tissue Energy Homeostasis and Inflammation.
Agudelo LZ, Ferreira DMS, ..., Berggren P, Ruas JL
Cell Metab. 27 (2) 378-392.e5 [2018-02-06; online 2018-02-08]
Mass Cytometry [Collaborative]
DOI Crossref
Ten steps to get started in Genome Assembly and Annotation
Dominguez Del Angel V, Hjerde E, ..., Binzer-Panchal M, Lantz H
F1000Res 7 (-) 148 [2018-02-05; online 2018-02-05]
NGI Uppsala (Uppsala Genome Center) [Collaborative]
DOI Crossref
Paternal easiRNAs regulate parental genome dosage in Arabidopsis
Martinez G, Wolff P, ..., Slotkin RK, Köhler C
Nat Genet 50 (2) 193-198 [2018-02-00; online 2018-01-15]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Red meat intake in chronic kidney disease patients: Two sides of the coin
Mafra D, Borges NA, ..., Lindholm B, Stenvinkel P
Nutrition 46 (-) 26-32 [2018-02-00; online 2018-02-00]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Genetical genomics of growth in a chicken model.
Johnsson M, Henriksen R, ..., Jensen P, Wright D
BMC Genomics 19 (1) 72 [2018-01-23; online 2018-01-23]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Rapid hybrid speciation in Darwin’s finches
Lamichhaney S, Han F, ..., Grant BR, Grant PR
Science 359 (6372) 224-228 [2018-01-12; online 2017-11-23]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
The Interaction Modes of Haloimidazolium Salts in Solution
Schulz N, Sokkar P, ..., Sanchez-Garcia E, Huber SM
Chem. Eur. J. - (-) - [2017-12-28; online 2017-12-28]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
CELSR2 is a candidate susceptibility gene in idiopathic scoliosis
Einarsdottir E, Grauers A, ..., Kere J, Gerdhem P
PLoS ONE 12 (12) e0189591 [2017-12-14; online 2017-12-14]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Microbial mineralization of cellulose in frozen soils
Segura JH, Nilsson MB, ..., Schleucher J, Öquist MG
Nat Commun 8 (1) - [2017-12-00; online 2017-10-27]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Identification of NCAN as a candidate gene for developmental dyslexia
Einarsdottir E, Peyrard-Janvid M, ..., Leinonen E, Kere J
Sci Rep 7 (1) - [2017-12-00; online 2017-08-24]
NGI Uppsala (Uppsala Genome Center) [Service]
DOI Crossref
The dynamic dimer structure of the chaperone Trigger Factor
Morgado L, Burmann BM, ..., Mazur A, Hiller S
Nat Commun 8 (1) - [2017-12-00; online 2017-12-08]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans
Scott RA, Scott LJ, ..., McCarthy MI, Prokopenko I
Diabetes 66 (11) 2888-2902 [2017-11-00; online 2017-05-31]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Targeted proteomic analysis of habitual coffee consumption.
Cornelis MC, Gustafsson S, ..., Lind L, Ingelsson E
J. Intern. Med. - (-) - [2017-10-16; online 2017-10-16]
Clinical Biomarkers [Service]
PubMed DOI Crossref
Tumor Necrosis Factor Receptor 1 and 2 Are Associated With Risk of Intracerebral Hemorrhage.
Svensson EH, Söderholm M, Abul-Kasim K, Engström G
Stroke 48 (10) 2710-2715 [2017-10-00; online 2017-08-22]
Clinical Biomarkers [Service]
PubMed DOI Crossref
Breast cancer in young women and prognosis: How important are proliferation markers?
Fredholm H, Magnusson K, ..., Frisell J, Fredriksson I
Eur. J. Cancer 84 (-) 278-289 [2017-10-00; online 2017-08-29]
Tissue Profiling [Collaborative]
PubMed DOI Crossref
Eosinophil Cationic Protein, Carotid Plaque, and Incidence of Stroke.
Sundström J, Söderholm M, ..., Orho-Melander M, Engström G
Stroke 48 (10) 2686-2692 [2017-10-00; online 2017-09-13]
Clinical Biomarkers [Service]
DOI Crossref
Comprehensive analysis of NMR data using advanced line shape fitting
Niklasson M, Otten R, ..., Petzold K, Lundström P
J Biomol NMR 69 (2) 93-99 [2017-10-00; online 2017-10-17]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
The evolutionary history of the DMRT3 ‘Gait keeper ’ haplotype
Staiger EA, Almén MS, ..., Rubin CJ, Andersson L
Anim Genet 48 (5) 551-559 [2017-10-00; online 2017-07-25]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
DOI Crossref
Structures of the human mitochondrial ribosome in native states of assembly
Brown A, Rathore S, ..., Amunts A, Ramakrishnan V
Nat Struct Mol Biol - (-) - [2017-09-11; online 2017-09-11]
Cryo-EM [Service]
DOI Crossref
Metabolic profiles from two different breakfast meals characterized by 1 H NMR-based metabolomics
Rådjursöga M, Karlsson GB, ..., Ellegård L, Winkvist A
Food Chem 231 (-) 267-274 [2017-09-00; online 2017-09-00]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Clonal Evolution of Autoreactive Germinal Centers.
Degn SE, van der Poel CE, ..., Victora GD, Carroll MC
Cell 170 (5) 913-926.e19 [2017-08-24; online 2017-08-26]
Autoimmunity Profiling [Service]
PubMed DOI Crossref
Mucin-Inspired Lubrication on Hydrophobic Surfaces
Käsdorf BT, Weber F, ..., Crouzier T, Lieleg O
Biomacromolecules 18 (8) 2454-2462 [2017-08-14; online 2017-07-03]
Protein Science Facility (PSF) [Service]
PubMed DOI Crossref
Use of Proteomics To Investigate Kidney Function Decline over 5 Years.
Carlsson AC, Ingelsson E, ..., Lind L, Ärnlöv J
Clin J Am Soc Nephrol 12 (8) 1226-1235 [2017-08-07; online 2017-07-21]
Clinical Biomarkers [Service]
DOI Crossref
Switchable ionic liquids enable efficient nanofibrillation of wood pulp
Berglund L, Anugwom I, ..., Mikkola JP, Oksman K
Cellulose 24 (8) 3265-3279 [2017-08-00; online 2017-06-06]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
The structure of the tetanus toxin reveals pH‐mediated domain dynamics
Masuyer G, Conrad J, Stenmark P
EMBO Rep. 18 (8) 1306-1317 [2017-08-00; online 2017-06-23]
Cryo-EM [Service]
PubMed DOI Crossref
High-Density Serum/Plasma Reverse Phase Protein Arrays.
Hellström C, Dodig-Crnković T, ..., Nilsson P, Sjöberg R
Methods Mol. Biol. 1619 (-) 229-238 [2017-07-05; online 2017-07-05]
Autoimmunity Profiling [Technology development]
PubMed DOI Crossref
Stability of Proteins in Dried Blood Spot Biobanks
Björkesten J, Enroth S, ..., Kamali-Moghaddam M, Landegren U
Mol Cell Proteomics 16 (7) 1286-1296 [2017-07-00; online 2017-05-13]
PLA Proteomics [Technology development]
DOI Crossref
Halogen Bonding: A Powerful Tool for Modulation of Peptide Conformation
Danelius E, Andersson H, ..., Gräfenstein J, Erdélyi M
Biochemistry 56 (25) 3265-3272 [2017-06-27; online 2017-06-12]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Identifying Bird Remains Using Ancient DNA Barcoding
Dalén L, Lagerholm V, ..., Irestedt M, Stewart J
Genes 8 (6) 169 [2017-06-21; online 2017-06-21]
Bioinformatics Support and Infrastructure [Collaborative]
DOI Crossref
Structural basis for ligand binding to an enzyme by a conformational selection pathway
Kovermann M, Grundström C, ..., Sauer UH, Wolf-Watz M
Proc Natl Acad Sci USA 114 (24) 6298-6303 [2017-06-13; online 2017-05-30]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
ProQ3D: improved model quality assessments using deep learning.
Uziela K, Menéndez Hurtado D, ..., Wallner B, Elofsson A
Bioinformatics 33 (10) 1578-1580 [2017-05-15; online 2017-01-06]
Bioinformatics Support and Infrastructure [Collaborative]
DOI Crossref
Regulating plant physiology with organic electronics
Poxson DJ, Karady M, ..., Simon DT, Berggren M
Proc Natl Acad Sci USA 114 (18) 4597-4602 [2017-05-02; online 2017-04-18]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Brodie vs Hummers graphite oxides for preparation of multi-layered materials
Talyzin AV, Mercier G, ..., Opitz A, Moons E
Carbon 115 (-) 430-440 [2017-05-00; online 2017-05-00]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Genetic Profile of Ductal Adenocarcinoma of the Prostate.
Seipel AH, Whitington T, ..., Lindberg J, Egevad L
Hum. Pathol. - (-) - [2017-04-27; online 2017-04-27]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Corrigendum: MTH1 inhibition eradicates cancer by preventing sanitation of the dNTP pool.
Gad H, Koolmeister T, ..., Scobie M, Ulrika Warpman Berglund &Thomas Helleday
Nature 544 (7651) 508 [2017-04-26; online 2017-04-28]
Drug Discovery and Development (DDD) [Service]
PubMed DOI Crossref
Sulfonimidamides in Medicinal and Agricultural Chemistry
Chinthakindi PK, Naicker T, ..., Kruger HG, Arvidsson PI
Angew. Chem. Int. Ed. 56 (15) 4100-4109 [2017-04-03; online 2017-02-23]
Drug Discovery and Development (DDD) [Technology development]
PubMed DOI Crossref
Green listed—a CRISPR screen tool
Panda SK, Boddul SV, ..., Fernandez-Ricaud L, Wermeling F
- 33 (7) 1099-1100 [2017-04-01; online 2016-12-19]
Bioinformatics Support and Infrastructure [Collaborative]
PubMed DOI Crossref
Stool frequency is associated with gut microbiota composition.
Hadizadeh F, Walter S, ..., Franke A, D'Amato M
Gut 66 (3) 559-560 [2017-03-00; online 2016-05-20]
Clinical Genomics Stockholm [Collaborative]
PubMed DOI Crossref
Discovery of new biomarkers for atrial fibrillation using a custom-made proteomics chip.
Lind L, Sundström J, ..., Hagström E, Ärnlöv J
Heart 103 (5) 377-382 [2017-03-00; online 2016-09-10]
Clinical Biomarkers [Service]
PubMed DOI Crossref
Flavonoids fromErythrina schliebenii
Nyandoro SS, Munissi JJE, ..., Rissanen K, Erdélyi M
J. Nat. Prod. 80 (2) 377-383 [2017-02-24; online 2017-01-23]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Three Chalconoids and a Pterocarpene from the Roots of Tephrosia aequilata
Atilaw Y, Duffy S, ..., Erdélyi M, Yenesew A
Molecules 22 (2) 318 [2017-02-20; online 2017-02-20]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Polyoxygenated Cyclohexenes and Other Constituents of Cleistochlamys kirkii Leaves
Nyandoro SS, Munissi JJE, ..., Rissanen K, Erdélyi M
J. Nat. Prod. 80 (1) 114-125 [2017-01-27; online 2016-12-21]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
About structural changes of lignin during kraft cooking and the kinetics of delignification
Mattsson C, Hasani M, ..., Mayzel M, Theliander H
- 71 (7-8) - [2017-01-26; online 2017-01-01]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Perivascular PDGFR-β is an independent marker for prognosis in renal cell carcinoma.
Frödin M, Mezheyeuski A, ..., Johansson M, Östman A
Br. J. Cancer 116 (2) 195-201 [2017-01-17; online 2016-12-09]
Tissue Profiling [Service]
DOI Crossref
Favored surface-limited oxidation of cellulose with Oxone® in water
Ruan CQ, Strømme M, Mihranyan A, Lindh J
RSC Adv. 7 (64) 40600-40607 [2017-00-00; online 2017-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Decoding Gene Expression in 2D and 3D
Bombrun M, Ranefall P, ..., Nilsson M, Wählby C
Scandinavian Conference on Image Analysis 2017 - (-) 257-268 [2017-00-00; online 2017-05-19]
BioImage Informatics [Collaborative]
PubMed DOI Crossref
An oxygen-sensitive toxin-antitoxin system.
Marimon O, Teixeira JM, ..., Wood TK, Pons M
Nat Commun 7 (-) 13634 [2016-12-08; online 2016-12-08]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Early Perspective
Seashore-Ludlow B, Lundbäck T
J Biomol Screen 21 (10) 1019-1033 [2016-12-00; online 2016-12-00]
Chemical Biology Consortium Sweden (CBCS) [Technology development]