Publications 2020

Title Authors Journal Published Online
Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities Böhm ME, Razavi M, Marathe NP, Flach CF, Larsson DGJ Microbiome 8 (1) - 2020-12-00 2020-03-20
Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei Montoliu-Nerin M, Sánchez-García M, Bergin C, ..., Johannesson H, Rosling A Sci Rep 10 (1) - 2020-12-00 2020-01-28
A spontaneous mitonuclear epistasis converging on Rieske Fe-S protein exacerbates complex III deficiency in mice Purhonen J, Grigorjev V, Ekiert R, ..., Fellman V, Kallijärvi J Nat Commun 11 (1) - 2020-12-00 2020-01-16
Clonal competition within complex evolutionary hierarchies shapes AML over time Sandén C, Lilljebjörn H, Orsmark Pietras C, ..., Ågerstam H, Fioretos T Nat Commun 11 (1) - 2020-12-00 2020-02-05
Single-cell analysis of human ovarian cortex identifies distinct cell populations but no oogonial stem cells Wagner M, Yoshihara M, Douagi I, ..., Lanner F, Damdimopoulou P Nat Commun 11 (1) - 2020-12-00 2020-03-02
Epigenome-wide meta-analysis of blood DNA methylation in newborns and children identifies numerous loci related to gestational age Merid SK, Novoloaca A, Sharp GC, ..., London SJ, Melén E Genome Med 12 (1) - 2020-12-00 2020-03-02
Exploiting loss of heterozygosity for allele-selective colorectal cancer chemotherapy Rendo V, Stoimenov I, Mateus A, ..., Cheong I, Sjöblom T Nat Commun 11 (1) - 2020-12-00 2020-03-11
A novel recombinant expression and purification approach for the full-length anti-apoptotic membrane protein Bcl-2 Ådén J, Mushtaq AU, Dingeldein A, Wallgren M, Gröbner G Protein Expression and Purification 172 (-) 105628 2020-08-00 2020-08-00
Determining the Genetic Regulation and Coordination of Lignification in Stem Tissues of Arabidopsis Using Semiquantitative Raman Microspectroscopy Blaschek L, Nuoendagula , Bacsik Z, Kajita S, Pesquet E ACS Sustainable Chem. Eng. - (-) - 2020-03-18 2020-03-18
The Relation Between Position and Chemical Composition of Bis-Indole Substituents Determines their Interactions with G-Quadruplex DNA Prasad B, Das RN, Jamroskovic J, ..., Sabouri N, Chorell E Chem. Eur. J. - (-) - 2020-03-18 2020-03-18
Distinct structural modulation of photosystem I and lipid environment stabilizes its tetrameric assembly Chen M, Perez-Boerema A, Zhang L, ..., Li S, Amunts A NPLANTS - (-) - 2020-03-09 2020-03-09
Pre- and postnatal Lactobacillus reuteri treatment alters DNA methylation of infant T helper cells. Forsberg A, Huoman J, Söderholm S, ..., Gustafsson M, Jenmalm MC Pediatr Allergy Immunol - (-) - 2020-03-09 2020-03-09
MutT homologue 1 (MTH1) removes N6-methyl-dATP from the dNTP pool. Scaletti ER, Vallin KS, Bräutigam L, ..., Stenmark P, Jemth AS J. Biol. Chem. - (-) - 2020-03-06 2020-03-06
Transcriptomic resources for evolutionary studies in flat periwinkles and related species. Marques JP, Sotelo G, Galindo J, ..., Hollander J, Faria R Sci Data 7 (1) 73 2020-03-03 2020-03-03
Oral Microbiota Profile Associates with Sugar Intake and Taste Preference Genes. Esberg A, Haworth S, Hasslöf P, Lif Holgerson P, Johansson I Nutrients 12 (3) - 2020-03-03 2020-03-03
Cellular and Genetic Regulation of Coniferaldehyde Incorporation in Lignin of Herbaceous and Woody Plants by Quantitative Wiesner Staining Blaschek L, Champagne A, Dimotakis C, ..., Kajita S, Pesquet E Front Plant Sci 11 (-) - 2020-03-02 2020-03-02
Structure of a minimal photosystem I from the green alga Dunaliella salina Perez-Boerema A, Klaiman D, Caspy I, ..., Amunts A, Nelson N NPLANTS - (-) - 2020-03-02 2020-03-02
Synthesis, Evaluation and Proposed Binding Pose of Substituted Spiro‐Oxindole Dihydroquinazolinones as IRAP Inhibitors Engen K, Vanga SR, Lundbäck T, ..., Larhed M, Rosenström U ChemistryOpen 9 (3) 325-337 2020-03-00 2020-03-02
Evolutionary genetics of canine respiratory coronavirus and recent introduction into Swedish dogs Wille M, Wensman JJ, Larsson S, ..., Hayer J, Malmberg M Infection, Genetics and Evolution - (-) 104290 2020-03-00 2020-03-00
The Relationship Between Polygenic Risk Scores and Cognition in Schizophrenia. Richards AL, Pardiñas AF, Frizzati A, ..., O'Donovan MC, Walters JTR Schizophr Bull 46 (2) 336-344 2020-02-26 2019-06-18
Footprints of natural selection at the mannose-6-phosphate isomerase locus in barnacles Nunez JCB, Flight PA, Neil KB, ..., Blomberg A, Rand DM Proc Natl Acad Sci USA - (-) 201918232 2020-02-25 2020-02-25
Patterns of African and Asian admixture in the Afrikaner population of South Africa. Hollfelder N, Erasmus JC, Hammaren R, ..., Greeff JM, Schlebusch CM BMC Biol. 18 (1) 16 2020-02-24 2020-02-24
Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment. Rasmussen ER, Hallberg P, Baranova EV, ..., Palmer CNA, Wadelius M Pharmacogenomics J. - (-) - 2020-02-21 2020-02-21
Achieving symptom relief in patients with Myalgic encephalomyelitis by targeting the neuro-immune interface and inducing disease tolerance Rodriguez LST, Pou C, Lakshmikanth T, ..., Julin P, Brodin P - - (-) - 2020-02-21 2020-02-21
Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length. Li C, Stoma S, Lotta LA, ..., Langenberg C, Codd V Am. J. Hum. Genet. - (-) - 2020-02-20 2020-02-20
Subtle structural alterations in G-quadruplex DNA regulate site specificity of fluorescence light-up probes Kumar R, Chand K, Bhowmik S, ..., Hedenström M, Chorell E Nucleic Acids Res 48 (3) 1108-1119 2020-02-20 2020-01-08
Shared genetic risk between eating disorder- and substance-use-related phenotypes: Evidence from genome-wide association studies. Munn-Chernoff MA, Johnson EC, Chou YL, ..., Bulik CM, Agrawal A Addict Biol - (-) e12880 2020-02-16 2020-02-16
Managed and Unmanaged Pinus sylvestris Forest Stands Harbour Similar Diversity and Composition of the Phyllosphere and Soil Fungi. Lynikienė J, Marčiulynienė D, Marčiulynas A, ..., Vaičiukynė M, Menkis A Microorganisms 8 (2) - 2020-02-15 2020-02-15
The First Structure of an Active Mammalian dCTPase and its Complexes With Substrate Analogs and Products. Scaletti E, Claesson M, Helleday T, Jemth AS, Stenmark P J. Mol. Biol. 432 (4) 1126-1142 2020-02-14 2020-01-15
Screening for autoantibody targets in post-vaccination narcolepsy using proteome arrays. Lind A, Eriksson D, Akel O, ..., Elding Larsson H, Landegren N Scand. J. Immunol. - (-) e12864 2020-02-13 2020-02-13
Longitudinal trajectories, correlations and mortality associations of nine biological ages across 20-years follow-up. Li X, Ploner A, Wang Y, ..., Jylhävä J, Hägg S Elife 9 (-) - 2020-02-11 2020-02-11
New approaches to the study of immune responses in humans Brodin P Hum Genet - (-) - 2020-02-10 2020-02-10
Clinicopathological features and prognostic value of SOX11 in childhood acute lymphoblastic leukemia. Grönroos T, Mäkinen A, Laukkanen S, ..., Heinäniemi M, Lohi O Sci Rep 10 (1) 2043 2020-02-06 2020-02-06
Thermal proteome profiling identifies oxidative-dependent inhibition of the transcription of major oncogenes as a new therapeutic mechanism for select anticancer compounds Peuget S, Zhu J, Sanz G, ..., Zubarev R, Selivanova G Cancer Res - (-) canres.2069.2019 2020-02-04 2020-02-04
A chromosome-scale reference genome for Giardia intestinalis WB. Xu F, Jex A, Svärd SG Sci Data 7 (1) 38 2020-02-04 2020-02-04
Glycogenin is Dispensable for Glycogen Synthesis in Human Muscle, and Glycogenin Deficiency Causes Polyglucosan Storage. Visuttijai K, Hedberg-Oldfors C, Thomsen C, ..., Roach P, Oldfors A J. Clin. Endocrinol. Metab. 105 (2) - 2020-02-01 2019-10-20
The Molecular Anatomy of Mouse Skin during Hair Growth and Rest Joost S, Annusver K, Jacob T, ..., Sandberg R, Kasper M Cell Stem Cell - (-) - 2020-02-00 2020-02-00
Exosomes influence the behavior of human mesenchymal stem cells on titanium surfaces. Wang X, Shah FA, Vazirisani F, ..., Ekström K, Thomsen P Biomaterials 230 (-) 119571 2020-02-00 2019-10-24
Quinazoline Ligands Induce Cancer Cell Death through Selective STAT3 Inhibition and G-Quadruplex Stabilization Jamroskovic J, Doimo M, Chand K, ..., Chorell E, Sabouri N J. Am. Chem. Soc. - (-) - 2020-01-28 2020-01-28
Molecular mechanisms of collateral sensitivity to the antibiotic nitrofurantoin. Roemhild R, Linkevicius M, Andersson DI PLoS Biol. 18 (1) e3000612 2020-01-27 2020-01-27
CREBBP and WDR 24 Identified as Candidate Genes for Quantitative Variation in Red-Brown Plumage Colouration in the Chicken. Fogelholm J, Henriksen R, Höglund A, ..., Jensen P, Wright D Sci Rep 10 (1) 1161 2020-01-24 2020-01-24
Image-Based Morphological Profiling Identifies a Lysosomotropic, Iron-Sequestering Autophagy Inhibitor Laraia L, Garivet G, Foley DJ, ..., Rodriguez R, Waldmann H Angew. Chem. Int. Ed. - (-) - 2020-01-24 2020-01-24
Human immune system variation during one year Lakshmikanth T, Muhammad SA, Olin A, ..., Uhlen M, Brodin P - - (-) - 2020-01-23 2020-01-23
The Medical Genome Reference Bank contains whole genome and phenotype data of 2570 healthy elderly. Pinese M, Lacaze P, Rath EM, ..., Dinger ME, Thomas DM Nat Commun 11 (1) 435 2020-01-23 2020-01-23
Loss of centromere function drives karyotype evolution in closely related Malassezia species. Sankaranarayanan SR, Ianiri G, Coelho MA, ..., Heitman J, Sanyal K Elife 9 (-) - 2020-01-20 2020-01-20
Genome-Based Comparison of All Species of the Genus Moorella, and Status of the Species Moorella thermoacetica and Moorella thermoautotrophica Redl S, Poehlein A, Esser C, ..., Dürre P, Nielsen AT Front Microbiol 10 (-) - 2020-01-17 2020-01-17
SWEDEGENE-a Swedish nation-wide DNA sample collection for pharmacogenomic studies of serious adverse drug reactions. Hallberg P, Yue QY, Eliasson E, ..., Ås J, Wadelius M Pharmacogenomics J. - (-) - 2020-01-17 2020-01-17
Evolution of a new function by fusion between phage DNA and a bacterial gene. Warsi O, Knopp M, Surkov S, Hultqvist JJ, Andersson DI Mol. Biol. Evol. - (-) - 2020-01-16 2020-01-16
Proteomic analysis of follicular fluid during human ovulation. Zakerkish F, Brännström M, Carlsohn E, ..., van der Post S, Thoroddsen A Acta Obstet Gynecol Scand - (-) - 2020-01-16 2020-01-16
Discovery of species-unique peptide biomarkers of bacterial pathogens by tandem mass spectrometry-based proteotyping. Karlsson R, Thorsell A, Gomila M, ..., Kristiansson E, Moore E Mol. Cell Proteomics - (-) - 2020-01-15 2020-01-15
Analysis of the genetic variants associated with circulating levels of sgp130. Results from the IMPROVE study. Bonomi A, Veglia F, Baldassarre D, ..., Gigante B, on behalf of the IMPROVE study group Genes Immun. - (-) - 2020-01-14 2020-01-14
A regulatory role for CHD2 in myelopoiesis. Shahin Varnoosfaderani F, Palau A, Dong W, ..., Svensson JP, Lennartsson A Epigenetics - (-) 1-13 2020-01-10 2020-01-10
Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis. Nunes L, Aasebø K, Mathot L, ..., Sjöblom T, Glimelius B Acta Oncol - (-) 1-10 2020-01-10 2020-01-10
Simultaneous mass spectrometry imaging of multiple neuropeptides in the brain and alterations induced by experimental parkinsonism and L-DOPA therapy. Hulme H, Fridjonsdottir E, Gunnarsdottir H, ..., Svenningsson P, Andrén PE Neurobiol. Dis. - (-) 104738 2020-01-09 2020-01-09
Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure. Shah S, Henry A, Roselli C, ..., Swerdlow DI, Lumbers RT Nat Commun 11 (1) 163 2020-01-09 2020-01-09
DAF-16/FOXO requires Protein Phosphatase 4 to initiate transcription of stress resistance and longevity promoting genes. Sen I, Zhou X, Chernobrovkin A, ..., Zubarev RA, Riedel CG Nat Commun 11 (1) 138 2020-01-09 2020-01-09
DNA methylation changes in Down syndrome derived neural iPSCs uncover co-dysregulation of ZNF and HOX3 families of transcription factors. Laan L, Klar J, Sobol M, ..., Schuster J, Dahl N Clin Epigenetics 12 (1) 9 2020-01-08 2020-01-08
A Light-up Logic Platform for Selective Recognition of Parallel G-Quadruplex Structures via Disaggregation-Induced Emission Deiana M, Chand K, Jamroskovic J, ..., Chorell E, Sabouri N Angew. Chem. Int. Ed. 59 (2) 896-902 2020-01-07 2019-11-22
A sample preparation protocol for high throughput immunofluorescence of suspension cells Backstrom A, Kugel L, Gnann C, ..., Lundberg E, Stadler C - - (-) - 2020-01-06 2020-01-06
Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet. Gelabert P, Sandoval-Velasco M, Serres A, ..., Gilbert MTP, Lalueza-Fox C Curr. Biol. 30 (1) 108-114.e5 2020-01-06 2019-12-12
Integrative discovery of treatments for high-risk neuroblastoma. Almstedt E, Elgendy R, Hekmati N, ..., Krona C, Nelander S Nat Commun 11 (1) 71 2020-01-03 2020-01-03
Metabolic Profiling and Compound-Class Identification Reveal Alterations in Serum Triglyceride Levels in Mice Immunized with Human Vaccine Adjuvant Alum Khoomrung S, Nookaew I, Sen P, ..., Harandi AM, Nielsen J J. Proteome Res. 19 (1) 269-278 2020-01-03 2019-10-18
PCSK6 Is a Key Protease in the Control of Smooth Muscle Cell Function in Vascular Remodeling. Rykaczewska U, Suur BE, Röhl S, ..., Hedin U, Matic L Circ. Res. - (-) - 2020-01-02 2020-01-02
A dual-action peptide-containing hydrogel targets wound infection and inflammation Puthia M, Butrym M, Petrlova J, ..., Kjellström S, Schmidtchen A Sci. Transl. Med. 12 (524) eaax6601 2020-01-01 2020-01-01
The Genome of the Endangered Dryas Monkey Provides New Insights into the Evolutionary History of the Vervets van der Valk T, Gonda CM, Silegowa H, ..., Detwiler KM, Guschanski K - 37 (1) 183-194 2020-01-01 2019-09-16
Genotypic variation in Norway spruce correlates to fungal communities in vegetative buds. Elfstrand M, Zhou L, Baison J, ..., Stenlid J, García-Gil MR Mol. Ecol. 29 (1) 199-213 2020-01-00 2019-12-09
Hepatitis E virus genotype 3 strains and a plethora of other viruses detected in raw and still in tap water Wang H, Kjellberg I, Sikora P, ..., Bergstedt O, Norder H Water Research 168 (-) 115141 2020-01-00 2020-01-00
Genome-wide signatures of environmental adaptation in European aspen ( Populus tremula) under current and future climate conditions. Ingvarsson PK, Bernhardsson C Evol Appl 13 (1) 132-142 2020-01-00 2019-04-02
Screening for bioactive secondary metabolites in Sri Lankan medicinal plants by microfractionation and targeted isolation of antimicrobial flavonoids from Derris scandens Mohotti S, Rajendran S, Muhammad T, ..., Hettiarachchi CM, Gunasekera S Journal of Ethnopharmacology 246 (-) 112158 2020-01-00 2020-01-00
Circadian regulation of phosphodiesterase 6 genes in zebrafish differs between cones and rods: Implications for photopic and scotopic vision. Abalo XM, Lagman D, Heras G, ..., Eggert J, Larhammar D Vision Res. 166 (-) 43-51 2020-01-00 2019-12-16
IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions—Insights from transcription factors Millard PS, Bugge K, Marabini R, ..., Burow M, Kragelund BB Protein Science 29 (1) 169-183 2020-01-00 2019-11-11
Identification of novel diagnostic and prognostic biomarkers for abdominal aortic aneurysm Memon AA, Zarrouk M, Ågren-Witteschus S, ..., Gottsäter A, Sundquist K Eur J Prev Cardiolog 27 (2) 132-142 2020-01-00 2019-08-29
Developmental exposure to a human relevant mixture of endocrine disruptors alters metabolism and adipogenesis in zebrafish (Danio rerio) Mentor A, Brunström B, Mattsson A, Jönsson M Chemosphere 238 (-) 124584 2020-01-00 2020-01-00
The Proteome of the Dentate Terminal Zone of the Perforant Path Indicates Presynaptic Impairment in Alzheimer Disease. Haytural H, Mermelekas G, Emre C, ..., Tjernberg LO, Frykman S Mol. Cell Proteomics 19 (1) 128-141 2020-01-00 2019-11-07
Protein and DNA methylation-based scores as surrogate markers for interferon system activation in patients with primary Sjögren’s syndrome Björk A, Richardsdotter Andersson E, Imgenberg-Kreuz J, ..., Nordmark G, Wahren-Herlenius M RMD Open 6 (1) e000995 2020-01-00 2020-01-07
Variable neurodevelopmental and morphological phenotypes of carriers with 12q12 duplications. Myers L, Blyth M, Moradkhani K, ..., Anderlid BM, Tammimies K Mol Genet Genomic Med 8 (1) e1013 2020-01-00 2019-11-15
Association of genetic variants related to plasma fatty acids with type 2 diabetes mellitus and glycaemic traits: a Mendelian randomisation study. Yuan S, Larsson SC Diabetologia 63 (1) 116-123 2020-01-00 2019-11-05
Mesoporous silica with precisely controlled pores reduces food efficiency and suppresses weight gain in mice Rinde M, Kupferschmidt N, Iqbal MN, ..., Lindgren M, Bengtsson T Nanomedicine 15 (2) 131-144 2020-01-00 2020-01-00
NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods. De Leoz MLA, Duewer DL, Fung A, ..., Yuan H, Stein SE Mol. Cell Proteomics 19 (1) 11-30 2020-01-00 2019-10-07
Effect of sample preparation techniques upon single cell chemical imaging: A practical comparison between synchrotron radiation based X-ray fluorescence (SR-XRF) and Nanoscopic Secondary Ion Mass Spectrometry (nano-SIMS) De Samber B, De Rycke R, De Bruyne M, ..., Polerecky L, Vincze L Analytica Chimica Acta - (-) - 2020-01-00 2020-01-00
Tailoring subtractive cell biopanning to identify diffuse gastric adenocarcinoma-associated antigens via human scFv antibodies. Mehdipour T, Tohidkia MR, Ata Saei A, ..., Zubarev RA, Nouri M Immunology 159 (1) 96-108 2020-01-00 2019-11-08
NMR Spectroscopic Analysis to Evaluate the Quality of Insulin: Concentration, Variability, and Excipient Content Malmodin D, Pedersen A, Karlsson BG, Forsander G J Diabetes Sci Technol 14 (1) 180-184 2020-01-00 2019-02-19
Regulation of α-synuclein by chaperones in mammalian cells Burmann BM, Gerez JA, Matečko-Burmann I, ..., Riek R, Hiller S Nature 577 (7788) 127-132 2020-01-00 2019-12-04
Metabolic response patterns in brain microdialysis fluids and serum during interstitial cisplatin treatment of high-grade glioma Björkblom B, Jonsson P, Tabatabaei P, ..., Bergenheim AT, Antti H Br J Cancer 122 (2) 221-232 2020-01-00 2019-12-10
Probabilistic cell typing enables fine mapping of closely related cell types in situ Qian X, Harris KD, Hauling T, ..., Hjerling-Leffler J, Nilsson M Nat Methods 17 (1) 101-106 2020-01-00 2019-11-18
In-plate toxicometabolomics of single zebrafish embryos Ribbenstedt A, Posselt M, Brunius C, Benskin JP Mol Omics - (-) - 2020-00-00 2020-00-00