Mol Ecol Resour

PubMed DOI Crossref

Linked-read sequencing enables haplotype-resolved resequencing at population scale.

Lutgen D, Ritter R, Olsen R, ..., Suh A, Burri R

Mol Ecol Resour - (-) - [2020-05-18; online 2020-05-18]

NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] National Genomics Infrastructure [Collaborative]

DOI Crossref

Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity

Jamy M, Foster R, Barbera P, ..., Bass D, Burki F

Mol Ecol Resour - (-) - [2019-11-09; online 2019-11-09]

Bioinformatics Compute and Storage [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Establishing arthropod community composition using metabarcoding: Surprising inconsistencies between soil samples and preservative ethanol and homogenate from Malaise trap catches.

Marquina D, Esparza-Salas R, Roslin T, Ronquist F

pmc

Mol Ecol Resour 19 (6) 1516-1530 [2019-11-00; online 2019-09-18]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Genotype‐free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data

Warmuth VM, Ellegren H

Mol Ecol Resour 19 (3) 586-596 [2019-05-00; online 2019-04-17]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.

van der Valk T, Vezzi F, Ormestad M, Dalén L, Guschanski K

Mol Ecol Resour - (-) - [2019-03-08; online 2019-03-08]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Whole mitochondrial genome capture from faecal samples and museum-preserved specimens.

van der Valk T, Lona Durazo F, Dalén L, Guschanski K

Mol Ecol Resour - (-) - [2017-07-04; online 2017-07-04]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome.

Dutoit L, Burri R, Nater A, Mugal CF, Ellegren H

GENBANK

Mol Ecol Resour 17 (4) 586-597 [2016-09-26; online 2016-09-26]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.

Humble E, Martinez-Barrio A, Forcada J, ..., Wolf JB, Hoffman JI

GENBANK

Mol Ecol Resour 16 (4) 909-921 [2016-07-00; online 2015-12-20]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Whole-genome resequencing of extreme phenotypes in collared flycatchers highlights the difficulty of detecting quantitative trait loci in natural populations.

Kardos M, Husby A, McFarlane SE, Qvarnström A, Ellegren H

Mol Ecol Resour 16 (3) 727-741 [2016-05-00; online 2015-12-10]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array.

Kawakami T, Backström N, Burri R, ..., Qvarnström A, Ellegren H

pmc dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP 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dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP dbSNP

Mol Ecol Resour 14 (6) 1248-1260 [2014-11-00; online 2014-05-03]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure