F1000Res

ISSN	2046-1402
ISSN-L	2046-1402
IUID	c7eaedee44bf44398d6d28fee69c0d7f
Modified	2020-11-27T13:14:08.817Z
Created	2017-10-04T15:14:48.626Z

Year 2024

PubMed DOI Crossref

A research data management (RDM) community for ELIXIR.

D'Anna F, Jareborg N, Jetten M, ..., Vondrasek J, Andrabi M

F1000Res 13 (-) - [2024-09-30; online 2024-09-30]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Year 2023

DOI Crossref

Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT

Borry M, Forsythe A, Andrades Valtueña A, ..., Warinner C, Fellows Yates JA

F1000Res 12 (-) 926 [2023-08-02; online 2023-08-02]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Year 2022

PubMed DOI Crossref

Systems Biology in ELIXIR: modelling in the spotlight.

Martins Dos Santos V, Anton M, Szomolay B, ..., Evelo CT, Hancock JM

F1000Res 11 (-) 1265 [2022-11-07; online 2022-11-07]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Year 2021

DOI Crossref

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Waterhouse RM, Adam-Blondon AF, Agosti D, ..., Willassen NP, Lanfear J

F1000Res 10 (-) 1238 [2021-12-03; online 2021-12-03]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists.

Martins GG, Cordelières FP, Colombelli J, ..., Tinevez JY, Miura K

F1000Res 10 (-) 334 [2021-04-30; online 2021-04-30]

BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]

PubMed DOI Crossref

Bioimage analysis workflows: community resources to navigate through a complex ecosystem.

Paul-Gilloteaux P, Tosi S, Hériché JK, ..., Miura K, Colombelli J

F1000Res 10 (-) 320 [2021-04-26; online 2021-04-26]

BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]

DOI Crossref

CytoBrowser: a browser-based collaborative annotation platform for whole slide images

Rydell C, Lindblad J

F1000Res 10 (-) 226 [2021-03-22; online 2021-03-22]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

Year 2020

DOI Crossref

Chanjo: Clincal grade sequence coverage analysis

Andeer R, Magnusson M, Wedell A, Stranneheim H

F1000Res 9 (-) 615 [2020-06-16; online 2020-06-16]

Clinical Genomics [Technology development] Clinical Genomics Stockholm [Technology development]

PubMed DOI Crossref

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants.

Garcia M, Juhos S, Larsson M, ..., Käller M, Nystedt B

F1000Res 9 (-) 63 [2020-01-29; online 2020-01-29]

Bioinformatics (NBIS) [Technology development] Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Technology development] Clinical Genomics [Collaborative] Clinical Genomics Stockholm [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2018

PubMed DOI Crossref

Ten steps to get started in Genome Assembly and Annotation

Dominguez Del Angel V, Hjerde E, Sterck L, ..., Binzer-Panchal M, Lantz H

F1000Res 7 (-) 148 [2018-02-05; online 2018-02-05]

Bioinformatics (NBIS) [Technology development] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Technology development] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

Year 2017

PubMed DOI Crossref

Four simple recommendations to encourage best practices in research software

Jiménez RC, Kuzak M, Alhamdoosh M, ..., Watson-Haigh NS, Crouch S

F1000Res 6 (-) 876 [2017-06-13; online 2017-06-13]

Bioinformatics (NBIS) [Technology development] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

A community proposal to integrate proteomics activities in ELIXIR

Vizcaíno JA, Walzer M, Jiménez RC, ..., Martens L, Kohlbacher O

F1000Res 6 (-) 875 [2017-06-13; online 2017-06-13]

Bioinformatics (NBIS) [Technology development] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data.

Eisfeldt J, Vezzi F, Olason P, Nilsson D, Lindstrand A

F1000Res 6 (-) 664 [2017-05-10; online 2017-05-10]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2016

PubMed DOI Crossref

Cluster Flow: A user-friendly bioinformatics workflow tool.

Ewels P, Krueger F, Käller M, Andrews S

F1000Res 5 (-) 2824 [2016-12-06; online 2016-12-06]

NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] National Genomics Infrastructure [Collaborative]