Kerkhoven EJ

ReprogrammingYarrowia lipolyticametabolism for efficient synthesis of itaconic acid from flask to semi-pilot scale

Fu J, Zaghen S, Lu H, ..., Di Bartolomeo F, Kerkhoven EJ

- - (-) - [2023-07-18; online 2023-07-18]

Chalmers Mass Spectrometry Infrastructure [Service]

Abolishing storage lipids induces protein misfolding and stress responses inYarrowia lipolytica

Zaghen S, Konzock O, Fu J, Kerkhoven EJ

JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY 50 (1) - [2023-02-17; online 2023-09-23]

Chalmers Mass Spectrometry Infrastructure [Service]

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data.

Gustafsson J, Anton M, Roshanzamir F, ..., Robinson JL, Nielsen J

Proc. Natl. Acad. Sci. U.S.A. 120 (6) e2217868120 [2023-02-07; online 2023-01-31]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

Validated Growth Rate-Dependent Regulation of Lipid Metabolism in Yarrowia lipolytica.

Poorinmohammad N, Fu J, Wabeke B, Kerkhoven EJ

Int J Mol Sci 23 (15) - [2022-07-31; online 2022-07-31]

Glycoproteomics and MS Proteomics [Service]

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0.

Domenzain I, Sánchez B, Anton M, ..., Sonnenschein N, Nielsen J

Nat Commun 13 (1) 3766 [2022-06-30; online 2022-06-30]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast.

Malina C, Yu R, Björkeroth J, Kerkhoven EJ, Nielsen J

Proc. Natl. Acad. Sci. U.S.A. 118 (51) - [2021-12-21; online 2021-12-15]

Glycoproteomics and MS Proteomics [Service]

An atlas of human metabolism.

Robinson JL, Kocabaş P, Wang H, ..., Uhlén M, Nielsen J

Sci Signal 13 (624) - [2020-03-24; online 2020-03-24]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor.

Wang H, Marcišauskas S, Sánchez BJ, ..., Nielsen J, Kerkhoven EJ

PLoS Comput. Biol. 14 (10) e1006541 [2018-10-00; online 2018-10-18]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]