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2023 (230)
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NGI Single cell
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Secondary
: Not shown in the list of current labels.
Started:
-
Ended:
Current
Year 2023
PubMed
DOI
Crossref
Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics
Jun SH
, Toosi H, Mold J, ...,
Roth A
,
Lagergren J
Nat Commun
14
(1) 982 [2023-02-22; online 2023-02-22]
NGI Short read [Service]
NGI Single cell [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung.
Sountoulidis A
, Marco Salas S, Braun E, ...,
Nilsson M
,
Samakovlis C
Nat Cell Biol
25
(2) 351-365 [2023-02-00; online 2023-01-16]
BioImage Informatics [Collaborative]
In Situ Sequencing (ISS) [Service]
NGI Short read [Service]
NGI Single cell [Service]
NGI Spatial omics [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Single-cell transcriptomics reveals correct developmental dynamics and high-quality midbrain cell types by improved hESC differentiation.
Nishimura K, Yang S, Lee KW, ..., Linnarsson S, Arenas E
Stem Cell Reports
18
(1) 337-353 [2023-01-10; online 2022-11-17]
NGI Short read [Service]
NGI Single cell [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
Year 2022
PubMed
DOI
Crossref
Dormant SOX9-positive cells facilitate MYC-driven recurrence of medulloblastoma.
Borgenvik A
,
Holmberg KO
,
Bolin S
, ...,
Weishaupt H
,
Swartling FJ
Cancer Res.
-
(-) - [2022-10-11; online 2022-10-11]
Bioinformatics Compute and Storage [Service]
NGI Single cell [Service]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Characterization of hemocytes and hematopoietic cells of a freshwater crayfish based on single-cell transcriptome analysis.
Söderhäll I, Fasterius E, Ekblom C, Söderhäll K
iScience
25
(8) 104850 [2022-08-19; online 2022-08-02]
Bioinformatics Compute and Storage [Service]
Bioinformatics Support and Infrastructure [Collaborative]
Bioinformatics Support, Infrastructure and Training [Collaborative]
NGI Single cell [Service]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Dynamical Systems Model of RNA Velocity Improves Inference of Single-cell Trajectory, Pseudo-time and Gene Regulation.
Liu R, Pisco AO, Braun E, Linnarsson S, Zou J
J. Mol. Biol.
434
(15) 167606 [2022-08-15; online 2022-04-27]
NGI Short read [Service]
NGI Single cell [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoids.
Zhao C
, Biondic S, Vandal K, ..., Reik W,
Petropoulos S
Genome Res.
32
(9) 1627-1641 [2022-08-10; online 2022-08-10]
Bioinformatics Compute and Storage [Service]
Bioinformatics Long-term Support WABI [Collaborative]
Bioinformatics Support, Infrastructure and Training [Collaborative]
NGI Short read [Service]
NGI Single cell [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Single-cell transcriptional pharmacodynamics of trifluridine in a tumor-immune model.
Selvin T, Fasterius E, Jarvius M, ..., Larsson R, Andersson CR
Sci Rep
12
(1) 11960 [2022-07-13; online 2022-07-13]
Bioinformatics Compute and Storage [Service]
Bioinformatics Support and Infrastructure [Collaborative]
Bioinformatics Support, Infrastructure and Training [Collaborative]
NGI Short read [Service]
NGI Single cell [Service]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Single-cell RNA-sequencing analysis of the developing mouse inner ear identifies molecular logic of auditory neuron diversification.
Petitpré C,
Faure L
,
Uhl P
, ...,
Hadjab S
,
Lallemend F
Nat Commun
13
(1) 3878 [2022-07-05; online 2022-07-05]
NGI Short read [Service]
NGI Single cell [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Developmental landscape of human forebrain at a single-cell level identifies early waves of oligodendrogenesis.
van Bruggen D, Pohl F, Langseth CM, ..., Sundström E, Castelo-Branco G
Dev. Cell
57
(11) 1421-1436.e5 [2022-06-06; online 2022-05-05]
Bioinformatics Compute and Storage [Service]
In Situ Sequencing (ISS) [Collaborative]
NGI Short read [Service]
NGI Single cell [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation.
Raine A, Lundmark A, Annett A, ..., Bergin C, Nordlund J
Sci Rep
12
(1) 5772 [2022-04-06; online 2022-04-06]
Bioinformatics Compute and Storage [Service]
Microbial Single Cell Genomics
NGI Single cell [Technology development]
NGI Uppsala (SNP&SEQ Technology Platform) [Technology development]
National Genomics Infrastructure [Technology development]
PubMed
DOI
Crossref
Uterine fluid microRNAs are dysregulated in women with recurrent implantation failure.
von Grothusen C
,
Frisendahl C
, Modhukur V, ..., Boggavarapu NR,
Gemzell-Danielsson K
Hum. Reprod.
37
(4) 734-746 [2022-04-01; online 2022-02-12]
Bioinformatics Compute and Storage [Service]
NGI Short read [Service]
NGI Single cell [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Identification of a discrete subpopulation of spinal cord ependymal cells with neural stem cell properties.
Stenudd M, Sabelström H, Llorens-Bobadilla E, ..., Barnabé-Heider F, Frisén J
Cell Rep
38
(9) 110440 [2022-03-01; online 2022-03-03]
Bioinformatics Compute and Storage [Service]
Integrated Microscopy Technologies Stockholm [Collaborative]
NGI Short read [Service]
NGI Single cell [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics.
Ratz M
,
von Berlin L
,
Larsson L
, ...,
Lundeberg J
,
Frisén J
Nat. Neurosci.
25
(3) 285-294 [2022-03-00; online 2022-02-24]
Bioinformatics Compute and Storage [Service]
Bioinformatics Long-term Support WABI [Collaborative]
Bioinformatics Support, Infrastructure and Training [Collaborative]
NGI Short read [Service]
NGI Single cell [Service]
NGI Spatial omics [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
SciLifeLab Data Centre
Publications
9.5.0