Clinical Genomics Lund

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SciLifeLab Infrastructure Unit Since 2016.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2016

Ended: Current

Year 2025

DOI Crossref
Effect of Tranexamic acid for acute spontaneous intracerebral haemorrhage: A systematic review and individual patient data meta-analysis
SIVAKUMAR MENON C, Law ZK, Woodhouse L, ..., Bath PM, Sprigg N
- - (-) - [2025-11-13; online 2025-11-13]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Evaluating cell-specific gene expression using single-cell and single-nuclei RNA-sequencing data from human pancreatic islets of the same donors.
Engström K, Nilsson Å, Ofori JK, ..., Bacos K, Ling C
Sci Rep 15 (1) 36133 [2025-10-16; online 2025-10-16]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Anchored screening identifies transcription factor blueprints underlying dendritic cell diversity and subset-specific anti-tumor immunity.
Henriques-Oliveira L, Altman AR, Kurochkin I, ..., Pires CF, Pereira CF
Immunity 58 (10) 2419-2438.e13 [2025-10-14; online 2025-08-29]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
The genomic landscape of relapsed infant and childhood KMT2A-rearranged acute leukemia.
Ahlgren L, Pilheden M, Sturesson H, ..., Ma J, Hagström-Andersson AK
Nat Commun 16 (1) 8964 [2025-10-08; online 2025-10-08]
Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
LINE-1 retrotransposons mediate cis-acting transcriptional control in human pluripotent stem cells and regulate early brain development.
Adami A, Garza R, Gerdes P, ..., Douse CH, Jakobsson J
Cell Genomics 5 (10) 100979 [2025-10-08; online 2025-08-22]
Clinical Genomics Lund [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Reliable on-treatment prognostication and target identification with a customized assay for circulating tumor DNA in patients with newly diagnosed pancreatic cancer.
Petersson A, Svensson M, Hau SO, ..., Gisselsson D, Jirström K
Sci Rep 15 (1) 34481 [2025-10-03; online 2025-10-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Lund [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Aberrant expression of SLAMF6 constitutes a targetable immune escape mechanism in acute myeloid leukemia.
Sandén C, Landberg N, Peña-Martínez P, ..., Ågerstam H, Fioretos T
Nat Cancer - (-) - [2025-10-03; online 2025-10-03]
Clinical Genomics Lund [Service] Drug Discovery and Development [Collaborative]
PubMed DOI Crossref
Progenitor exhausted PD-1+ T cells are cellular targets of immune checkpoint inhibition in atherosclerosis.
Mulholland M, Chalou A, Andersson SHA, ..., Gisterå A, Engelbertsen D
Nat Cardiovasc Res 4 (10) 1311-1328 [2025-10-00; online 2025-10-07]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Targeted ferroptosis induction enhances chemotherapy efficacy in chemoresistant neuroblastoma.
Mañas A, Seger A, Adamska A, ..., Aaltonen K, Bexell D
NPJ Precis Oncol 9 (1) 311 [2025-09-16; online 2025-09-16]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Ontogeny-specific induction of the KMT2A::AFF1-fusion drives development of a distinct CD24 positive pre-leukemic state.
Calderón AS, Ghazanfari R, Masoumi Z, ..., Bryder D, Böiers C
Leukemia 39 (9) 2099-2111 [2025-09-00; online 2025-07-11]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Epigenetic biomarkers predict macrovascular events in individuals with type 2 diabetes.
García-Calzón S, Maguolo A, Eichelmann F, ..., Gonçalves I, Ling C
Cell Reports Medicine 6 (8) 102290 [2025-08-19; online 2025-08-07]
Clinical Genomics Lund [Service]
DOI Crossref
The 3D genome of pediatric B-cell precursor acute lymphoblastic leukemia
Moura-Castro LH, Aydın E, Telliam Dushime G, ..., Yang M, Paulsson K
- - (-) - [2025-07-25; online 2025-07-25]
Clinical Genomics Lund [Service]
DOI Crossref
Phenotypic Screening Identifies Flunarizine as an Inhibitor of Radiotherapy-Induced Astrocyte Reactivity with Therapeutic Potential in Glioblastoma
Jeannot P, Rosberg R, Lindgren D, ..., Carragher NO, Pietras A
- - (-) - [2025-07-17; online 2025-07-17]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Validation of Guidelines for Genetic Investigation of Myeloid Neoplasms with Germline Predisposition: Results from a Prospective Cohort Study.
Tesi B, Robelius A, Baskin B, ..., Hellström-Lindberg E, Baliakas P
Clin. Cancer Res. 31 (14) 3062-3071 [2025-07-15; online 2025-05-19]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Bladder cancer subtypes exhibit limited plasticity across different microenvironments and in metastases.
Bernardo C, Chattopadhyay S, Andersson N, ..., Höglund M, Sjödahl G
Exp Hematol Oncol 14 (1) 91 [2025-07-02; online 2025-07-02]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Lund [Service] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Precision Omics Initiative Sweden (PROMISE) will integrate research with healthcare.
Kämpe A, Gudmundsson S, Walsh CP, ..., Lindstrand A, Lappalainen T
Nat. Med. 31 (6) 1730-1732 [2025-06-00; online 2025-04-05]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Lund [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
TOR1AIP2 as a candidate gene for dystonia-hemichorea/hemiballism.
Kafantari E, Hernandez VJ, Necpál J, ..., Schwartz TU, Puschmann A
Parkinsonism Relat Disord 134 (-) 107781 [2025-05-00; online 2025-03-11]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
The DNA methylation landscape of primary triple-negative breast cancer.
Aine M, Nacer DF, Arbajian E, ..., Borg Å, Staaf J
Nat Commun 16 (1) 3041 [2025-03-28; online 2025-03-28]
Clinical Genomics Lund [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Indole-3-propionic acid promotes hepatic stellate cells inactivation.
Ilha M, Sehgal R, Matilainen J, ..., Vaittinen M, Pihlajamäki J
J Transl Med 23 (1) 253 [2025-03-01; online 2025-03-01]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Blood-Based Epigenetic Biomarkers Associated With Incident Chronic Kidney Disease in Individuals With Type 2 Diabetes.
Marchiori M, Maguolo A, Perfilyev A, ..., García-Calzón S, Ling C
Diabetes 74 (3) 439-450 [2025-03-01; online 2024-12-23]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Discovery of Cis-Regulatory Mechanisms via Non-Coding Mutations in Acute Lymphoblastic Leukemia.
Aydın E, Woodward EL, Dushime GT, ..., Paulsson K, Yang M
Genes Chromosomes Cancer 64 (3) e70045 [2025-03-00; online 2025-03-27]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
The Progression of Mycosis Fungoides During Treatment with Mogamulizumab: A BIO-MUSE Case Study of the Tumor and Immune Response in Peripheral Blood and Tissue.
Johansson A, Kalliara E, Belfrage E, ..., Drott K, Ek S
Biomedicines 13 (1) - [2025-01-14; online 2025-01-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Lund [Service]
PubMed DOI Crossref
An activin receptor-like kinase 1-governed monocytic lineage shapes an immunosuppressive landscape in breast cancer metastases.
Safaee Talkhoncheh M, Sjölund J, Bolivar P, ..., Bocci M, Pietras K
J. Clin. Invest. 135 (5) - [2025-01-14; online 2025-01-14]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
GBA1 T369M and Parkinson's disease - Further evidence of a lack of association in the Swedish population.
Brolin KA, Bäckström D, Wallenius J, ..., Hansson O, Swanberg M
Parkinsonism Relat Disord 130 (-) 107191 [2025-01-00; online 2024-10-31]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
DNA methylation in cord blood partially mediates the effects of prepregnancy BMI on early childhood offspring BMI.
Maguolo A, Jönsson J, Perfilyev A, ..., Renault KM, Ling C
Obesity (Silver Spring) 33 (1) 177-189 [2025-01-00; online 2024-12-11]
Clinical Genomics Lund [Service]

Year 2024

PubMed DOI Crossref
Multiomics profiling of DNA methylation, microRNA, and mRNA in skeletal muscle from monozygotic twin pairs discordant for type 2 diabetes identifies dysregulated genes controlling metabolism.
Ling C, Vavakova M, Ahmad Mir B, ..., Vaag A, Nilsson E
BMC Med 22 (1) 572 [2024-12-02; online 2024-12-02]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
A Versatile and Upgraded Version of the LundTax Classification Algorithm Applied to Independent Cohorts.
Cotillas EA, Bernardo C, Veerla S, ..., Sjödahl G, Eriksson P
J Mol Diagn 26 (12) 1081-1101 [2024-12-00; online 2024-09-24]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Spatial Multiomics Reveals Intratumoral Immune Heterogeneity with Distinct Cytokine Networks in Lung Cancer Brain Metastases.
Christensson G, Bocci M, Kazi JU, ..., Gonzalez Velozo H, Hagerling C
Cancer Res Commun 4 (11) 2888-2902 [2024-11-01; online 2024-10-14]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Transcriptomic profiles of myxofibrosarcoma and undifferentiated pleomorphic sarcoma correlate with clinical and genomic features.
Mitra S, Farswan A, Piccinelli P, ..., Pillay N, Mertens F
J. Pathol. 264 (3) 293-304 [2024-11-00; online 2024-09-11]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
In vivo dendritic cell reprogramming for cancer immunotherapy.
Ascic E, Åkerström F, Sreekumar Nair M, ..., Rosa FF, Pereira CF
Science 386 (6719) eadn9083 [2024-10-18; online 2024-10-18]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Early evolutionary branching across spatial domains predisposes to clonal replacement under chemotherapy in neuroblastoma.
Karlsson J, Yasui H, Mañas A, ..., Bexell D, Gisselsson D
Nat Commun 15 (1) 8992 [2024-10-18; online 2024-10-18]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Molecular Subtypes Are Associated With Clinical Benefit in Cisplatin-Treated Metastatic Urothelial Cancer Patients.
Holmsten K, Sjödahl G, Abrahamsson J, ..., Liedberg F, Ullén A
JCO Precision Oncology 8 (-) e2400209 [2024-10-00; online 2024-10-02]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Mini-heterochromatin domains constrain the cis-regulatory impact of SVA transposons in human brain development and disease.
Horváth V, Garza R, Jönsson ME, ..., Douse CH, Jakobsson J
Nat. Struct. Mol. Biol. 31 (10) 1543-1556 [2024-10-00; online 2024-06-04]
Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Single-cell genomics details the maturation block in BCP-ALL and identifies therapeutic vulnerabilities in DUX4-r cases.
Thorsson H, Henningsson R, Puente-Moncada N, ..., Lilljebjörn H, Fioretos T
Blood 144 (13) 1399-1411 [2024-09-26; online 2024-07-05]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Hematopoietic cells emerging from hemogenic endothelium exhibit lineage-specific oxidative stress responses.
Biezeman H, Nubiè M, Oburoglu L
J. Biol. Chem. 300 (11) 107815 [2024-09-24; online 2024-09-24]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Activating mutations remodel the chromatin accessibility landscape to drive distinct regulatory networks in KMT2A-rearranged acute leukemia.
Zhang Q, Falqués-Costa T, Pilheden M, ..., Hyrenius-Wittsten A, Hagström-Andersson AK
Hemasphere 8 (9) e70006 [2024-09-00; online 2024-09-26]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
DNA methylation governs the sensitivity of repeats to restriction by the HUSH-MORC2 corepressor.
Pandiloski N, Horváth V, Karlsson O, ..., Jakobsson J, Douse CH
Nat Commun 15 (1) 7534 [2024-08-30; online 2024-08-30]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization.
Erb IK, Suarez C, Frank EM, ..., Lindberg E, Paul CJ
FEMS Microbes 5 (-) xtae024 [2024-08-14; online 2024-08-14]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Micro-costing of genetic diagnostics in acute leukemia in Sweden: from standard-of-care to whole-genome sequencing.
Thangavelu T, Wirta V, Orsmark-Pietras C, ..., Rosenquist R, Levin LÅ
J Med Econ 27 (1) 1053-1060 [2024-08-08; online 2024-08-08]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Clinical Genomics Stockholm [Service] Clinical Genomics Uppsala [Collaborative]
DOI Crossref
A cancer immunotherapy modality based on dendritic cell reprogrammingin vivo
Ascic E, Åkerström F, Sreekumar Nair M, ..., Rosa FF, Pereira CF
- - (-) - [2024-07-11; online 2024-07-11]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Precision Diagnostics in Myeloid Malignancies: Development and Validation of a National Capture-Based Gene Panel.
Orsmark-Pietras C, Lyander A, Ladenvall C, ..., Fioretos T, SciLifeLab Clinical Genomics Platform and Genomic Medicine Sweden
Genes Chromosomes Cancer 63 (7) e23257 [2024-07-00; online 2024-07-20]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Clinical Genomics Stockholm [Service] Clinical Genomics Uppsala [Technology development]
PubMed DOI Crossref
The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1.
Gustavsson EK, Sethi S, Gao Y, ..., Hardy J, Ryten M
Sci Adv 10 (26) eadk1296 [2024-06-28; online 2024-06-26]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
MOXD1 is a lineage-specific gene and a tumor suppressor in neuroblastoma.
Fredlund E, Andersson S, Hilgert E, ..., van Nes J, Mohlin S
Sci Adv 10 (25) eado1583 [2024-06-21; online 2024-06-21]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Sequential drug treatment targeting cell cycle and cell fate regulatory programs blocks non-genetic cancer evolution in acute lymphoblastic leukemia.
Malyukova A, Lahnalampi M, Falqués-Costa T, ..., Heinäniemi M, Sangfelt O
Genome Biol. 25 (1) 143 [2024-05-31; online 2024-05-31]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Distinct Infiltration of T Cell Populations in Bladder Cancer Molecular Subtypes.
Sincic V, Arlenhold KF, Richtmann S, ..., Liedberg F, Lundberg K
Cells 13 (11) - [2024-05-28; online 2024-05-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
MDM2 amplification in rod-shaped chromosomes provides clues to early stages of circularized gene amplification in liposarcoma.
Sydow S, Piccinelli P, Mitra S, ..., Spierings D, Mertens F
Commun Biol 7 (1) 606 [2024-05-20; online 2024-05-20]
Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Genomic alterations in ovarian endometriosis and subsequently diagnosed ovarian carcinoma.
Linder A, Westbom-Fremer S, Mateoiu C, ..., Hedenfalk I, Sundfeldt K
Hum. Reprod. 39 (5) 1141-1154 [2024-05-02; online 2024-03-09]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Molecular patterns of resistance to immune checkpoint blockade in melanoma.
Lauss M, Phung B, Borch TH, ..., Donia M, Jönsson G
Nat Commun 15 (1) 3075 [2024-04-09; online 2024-04-09]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Current and emerging sequencing-based tools for precision cancer medicine.
Edsjö A, Gisselsson D, Staaf J, ..., Cavelier L, Rosenquist R
Mol Aspects Med 96 (-) 101250 [2024-04-00; online 2024-02-07]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
DOI Crossref
Analysis of genetic variant associated with heart failure mortality implicates thymic stromal lymphopoietin as mediator of strain‐induced myocardial fibroblast‐mast cell crosstalk and fibrosis
Pimpalwar N, Celik S, Karbalaei Sadegh M, ..., Gidlöf O, Smith JG
The FASEB Journal 38 (4) - [2024-02-29; online 2024-02-26]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Metastasis and recurrence patterns in the molecular subtypes of urothelial bladder cancer.
Sjödahl G, Eriksson P, Holmsten K, ..., Ullén A, Liedberg F
Int. J. Cancer 154 (1) 180-190 [2024-01-01; online 2023-09-06]
Clinical Genomics [Service] Clinical Genomics Lund [Service]

Year 2023

PubMed DOI Crossref
A Gradual Transition Toward Anaplasia in Wilms Tumor Through Tolerance to Genetic Damage.
Uno K, Rastegar B, Jansson C, ..., Mengelbier LH, Gisselsson D
Mod. Pathol. 37 (1) 100382 [2023-11-10; online 2023-11-10]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Single-cell transcriptomics of human traumatic brain injury reveals activation of endogenous retroviruses in oligodendroglia.
Garza R, Sharma Y, Atacho DAM, ..., Jakobsson J, Marklund N
Cell Rep - (-) 113395 [2023-11-08; online 2023-11-08]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification.
Garza R, Atacho DAM, Adami A, ..., Douse CH, Jakobsson J
Sci Adv 9 (44) eadh9543 [2023-11-03; online 2023-11-01]
Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
UROSCAN and UROSCANSEQ: a large-scale multicenter effort towards translation of molecular bladder cancer subtypes into clinical practice – from biobank to RNA-sequencing in real time
Liedberg F, Abrahamsson J, Bernardo C, ..., Sjödahl G, Eriksson P
Scandinavian Journal of Urology 57 (1-6) 2-9 [2023-11-02; online 2022-12-20]
Clinical Genomics [Collaborative] Clinical Genomics Lund [Collaborative]
PubMed DOI Crossref
Clinical and genetic analyses of a Swedish patient series diagnosed with ataxia.
Gorcenco S, Kafantari E, Wallenius J, ..., Karrman K, Puschmann A
J. Neurol. - (-) - [2023-10-03; online 2023-10-03]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Targeting Toll-like receptor-driven systemic inflammation by engineering an innate structural fold into drugs.
Petruk G, Puthia M, Samsudin F, ..., Lindstedt S, Schmidtchen A
Nat Commun 14 (1) 6097 [2023-09-29; online 2023-09-29]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Structural Proteomics [Collaborative]
PubMed DOI Crossref
Single-cell multiomics of human fetal hematopoiesis define a developmental-specific population and a fetal signature.
Sommarin MNE, Olofzon R, Palo S, ..., Karlsson G, Böiers C
Blood Adv 7 (18) 5325-5340 [2023-09-26; online 2023-06-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Combined GLUT1 and OXPHOS inhibition eliminates acute myeloid leukemia cells by restraining their metabolic plasticity.
Rodriguez-Zabala M, Ramakrishnan R, Reinbach K, ..., Woods NB, Järås M
Blood Adv 7 (18) 5382-5395 [2023-09-26; online 2023-07-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
In vivo gene expression profile of Haemophilus influenzae during human pneumonia.
Polland L, Rydén H, Su Y, Paulsson M
Microbiol Spectr 11 (5) e0163923 [2023-09-14; online 2023-09-14]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
DOI Crossref
Trunk neural crest gene MOXD1 affects embryonic development
Fredlund E, Andersson S, Ferreira M, Mohlin S
- - (-) - [2023-08-31; online 2023-08-31]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
GATA2 mitotic bookmarking is required for definitive haematopoiesis.
Silvério-Alves R, Kurochkin I, Rydström A, ..., Martin-Gonzalez J, Pereira CF
Nat Commun 14 (1) 4645 [2023-08-14; online 2023-08-14]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Restoring tumor immunogenicity with dendritic cell reprogramming.
Zimmermannova O, Ferreira AG, Ascic E, ..., Svane IM, Pereira CF
Sci Immunol 8 (85) eadd4817 [2023-07-14; online 2023-07-07]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Resolving the Pathogenesis of Anaplastic Wilms Tumors through Spatial Mapping of Cancer Cell Evolution.
Rastegar B, Andersson N, Petersson A, ..., Holmquist Mengelbier L, Gisselsson D
Clin. Cancer Res. 29 (14) 2668-2677 [2023-07-14; online 2023-05-04]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Urodrill - a novel MRI-guided endoscopic biopsy technique to sample and molecularly classify muscle-invasive bladder cancer without fractionating the specimen during transurethral resection.
Eriksson P, Berg J, Bernardo C, ..., Zackrisson S, Liedberg F
Eur Urol Open Sci 53 (-) 78-82 [2023-07-00; online 2023-06-02]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Temporal multimodal single-cell profiling of native hematopoiesis illuminates altered differentiation trajectories with age.
Konturek-Ciesla A, Dhapola P, Zhang Q, ..., Karlsson G, Bryder D
Cell Rep 42 (4) 112304 [2023-04-25; online 2023-03-23]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
DOI Crossref
Enhanced protein synthesis is a defining requirement for neonatal B cell development
Åkerstrand H, Boldrin E, Montano G, ..., Bellodi C, Yuan J
Front Immunol 14 (-) - [2023-04-17; online 2023-04-17]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
The complement receptor C3AR constitutes a novel therapeutic target in NPM1-mutated AML.
von Palffy S, Thorsson H, Peña-Martínez P, ..., Lilljebjörn H, Fioretos T
Blood Adv 7 (7) 1204-1218 [2023-04-11; online 2022-11-17]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Clonal origin and development of high hyperdiploidy in childhood acute lymphoblastic leukaemia.
Woodward EL, Yang M, Moura-Castro LH, ..., Foijer F, Paulsson K
Nat Commun 14 (1) 1658 [2023-03-25; online 2023-03-25]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Identification of phenotypically, functionally, and anatomically distinct stromal niche populations in human bone marrow based on single-cell RNA sequencing.
Li H, Bräunig S, Dhapolar P, ..., Lang S, Scheding S
Elife 12 (-) - [2023-03-06; online 2023-03-06]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Venetoclax-Resistant T-ALL Cells Display Distinct Cancer Stem Cell Signatures and Enrichment of Cytokine Signaling.
Shah K, Al Ashiri L, Nasimian A, Ahmed M, Kazi JU
Int J Mol Sci 24 (5) - [2023-03-05; online 2023-03-05]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Inactivation of RB1, CDKN2A, and TP53 have distinct effects on genomic stability at side-by-side comparison in karyotypically normal cells.
Andersson N, Saba KH, Magnusson L, ..., Nord KH, Gisselsson D
Genes Chromosomes Cancer 62 (2) 93-100 [2023-02-00; online 2022-09-30]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Single-cell analysis of myeloid cells in HPV+ tonsillar cancer.
Jimenez DG, Altunbulakli C, Swoboda S, ..., Greiff L, Lindstedt M
Front Immunol 13 (-) 1087843 [2023-01-19; online 2023-01-19]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Lund [Service]
DOI Crossref
MOXD1 is a gate-keeper of organ homeostasis and functions as a tumor-suppressor in neuroblastoma
Fredlund E, Andersson S, Hilgert E, ..., van Nes J, Mohlin S
- - (-) - [2023-01-19; online 2023-01-19]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
The injury-induced transcription factor SOX9 alters the expression of LBR, HMGA2, and HIPK3 in the human kidney.
Kha M, Krawczyk K, Choong OK, ..., Swärd K, Johansson ME
Am. J. Physiol. Renal Physiol. 324 (1) F75-F90 [2023-01-01; online 2022-12-01]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Cerebral small vessel disease: Recent advances and future directions.
Markus HS, de Leeuw FE
Int J Stroke 18 (1) 4-14 [2023-01-00; online 2022-12-29]
Clinical Genomics [Service] Clinical Genomics Lund [Service]

Year 2022

PubMed DOI Crossref
Developmental cues license megakaryocyte priming in murine hematopoietic stem cells.
Kristiansen TA, Zhang Q, Vergani S, ..., Ungerbäck J, Yuan J
Blood Adv 6 (24) 6228-6241 [2022-12-27; online 2022-05-19]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Clinically relevant treatment of PDX models reveals patterns of neuroblastoma chemoresistance.
Mañas A, Aaltonen K, Andersson N, ..., Gisselsson D, Bexell D
Sci Adv 8 (43) eabq4617 [2022-10-28; online 2022-10-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Engineering human mini-bones for the standardized modeling of healthy hematopoiesis, leukemia, and solid tumor metastasis.
Grigoryan A, Zacharaki D, Balhuizen A, ..., Bexell D, Bourgine PE
Sci Transl Med 14 (666) eabm6391 [2022-10-12; online 2022-10-12]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
DNA promoter hypermethylation of melanocyte lineage genes determines melanoma phenotype.
Sanna A, Phung B, Mitra S, ..., Pietras K, Jönsson G
JCI Insight 7 (19) - [2022-10-10; online 2022-10-10]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Duplex Sequencing Uncovers Recurrent Low-frequency Cancer-associated Mutations in Infant and Childhood KMT2A-rearranged Acute Leukemia.
Pilheden M, Ahlgren L, Hyrenius-Wittsten A, ..., Gawad C, Hagström-Andersson AK
Hemasphere 6 (10) e785 [2022-10-00; online 2022-09-30]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Bacteraemia and infective endocarditis with Streptococcus bovis-Streptococcus equinus-complex: a retrospective cohort study.
Öberg J, Nilson B, Gilje P, Rasmussen M, Inghammar M
Infect Dis (Lond) 54 (10) 760-765 [2022-10-00; online 2022-06-22]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Distinct subcellular autophagy impairments in induced neurons from patients with Huntington's disease.
Pircs K, Drouin-Ouellet J, Horváth V, ..., Barker RA, Jakobsson J
Brain 145 (9) 3035-3057 [2022-09-14; online 2021-12-23]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Glioblastoma CD105+ cells define a SOX2- cancer stem cell-like subpopulation in the pre-invasive niche.
Li J, Ek F, Olsson R, Belting M, Bengzon J
Acta Neuropathol Commun 10 (1) 126 [2022-08-29; online 2022-08-29]
Chemical Biology Consortium Sweden [Collaborative] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Scarf enables a highly memory-efficient analysis of large-scale single-cell genomics data.
Dhapola P, Rodhe J, Olofzon R, ..., Soneji S, Karlsson G
Nat Commun 13 (1) 4616 [2022-08-08; online 2022-08-08]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Concurrent stem- and lineage-affiliated chromatin programs precede hematopoietic lineage restriction.
Safi F, Dhapola P, Warsi S, ..., Thakur RK, Karlsson G
Cell Rep 39 (6) 110798 [2022-05-10; online 2022-05-12]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Single-cell transcriptional profiling informs efficient reprogramming of human somatic cells to cross-presenting dendritic cells.
Rosa FF, Pires CF, Kurochkin I, ..., Scheding S, Pereira CF
Sci Immunol 7 (69) eabg5539 [2022-03-04; online 2022-03-04]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Pyruvate metabolism guides definitive lineage specification during hematopoietic emergence.
Oburoglu L, Mansell E, Canals I, ..., Soneji S, Woods NB
EMBO Rep. 23 (2) e54384 [2022-02-03; online 2021-12-16]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
A cis-acting structural variation at the ZNF558 locus controls a gene regulatory network in human brain development.
Johansson PA, Brattås PL, Douse CH, ..., Eichler EE, Jakobsson J
Cell Stem Cell 29 (1) 52-69.e8 [2022-01-06; online 2021-10-07]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Amplification of ERBB2 (HER2) in embryonal rhabdomyosarcoma: A potential treatment target in rare cases?
Mitra S, Sydow S, Magnusson L, ..., Gisselsson D, Mertens F
Genes Chromosomes Cancer 61 (1) 5-9 [2022-01-00; online 2021-09-01]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
DOI Crossref
<i>Streptococcus bovis</i>-bacteremia: subspecies distribution and association with colorectal cancer: a retrospective cohort study
Öberg J, Rasmussen M, Buchwald P, Nilson B, Inghammar M
Epidemiol. Infect. 150 (-) - [2022-00-00; online 2021-11-26]
Clinical Genomics [Service] Clinical Genomics Lund [Service]

Year 2021

PubMed DOI Crossref
CD105+CD90+CD13+ identifies a clonogenic subset of adventitial lung fibroblasts.
Kadefors M, Rolandsson Enes S, Åhrman E, ..., Scheding S, Westergren-Thorsson G
Sci Rep 11 (1) 24417 [2021-12-24; online 2021-12-24]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Early Pregnancy Exposure to Ambient Air Pollution among Late-Onset Preeclamptic Cases Is Associated with Placental DNA Hypomethylation of Specific Genes and Slower Placental Maturation.
Engström K, Mandakh Y, Garmire L, ..., Erlandsson L, Hansson SR
Toxics 9 (12) 338 [2021-12-06; online 2021-12-06]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Different Responses to Neoadjuvant Chemotherapy in Urothelial Carcinoma Molecular Subtypes.
Sjödahl G, Abrahamsson J, Holmsten K, ..., Ullén A, Liedberg F
Eur. Urol. - (-) - [2021-11-12; online 2021-11-12]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
A comparison of rule-based and centroid single-sample multiclass predictors for transcriptomic classification.
Eriksson P, Marzouka NA, Sjödahl G, ..., Liedberg F, Höglund M
Bioinformatics - (-) - [2021-11-12; online 2021-11-12]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
cGMP-PKG dependent transcriptome in normal and degenerating retinas: Novel insights into the retinitis pigmentosa pathology.
Zhou J, Rasmussen M, Ekström P
Exp. Eye Res. 212 (-) 108752 [2021-11-00; online 2021-08-31]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Targeted genomic investigations in a population-based cohort of mantle cell lymphoma reveal novel clinically relevant targets.
Rodrigues JM, Porwit A, Hassan M, Ek S, Jerkeman M
Leuk. Lymphoma 62 (11) 2637-2647 [2021-11-00; online 2021-06-03]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Transcriptomics paving the way for improved diagnostics and precision medicine of acute leukemia.
Lilljebjörn H, Orsmark-Pietras C, Mitelman F, Hagström-Andersson A, Fioretos T
Semin. Cancer Biol. - (-) - [2021-10-01; online 2021-10-01]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Genomic and transcriptomic characterization of desmoplastic small round cell tumors.
Sydow S, Versleijen-Jonkers YMH, Hansson M, ..., Flucke UE, Mertens F
Genes Chromosomes Cancer 60 (9) 595-603 [2021-09-00; online 2021-05-17]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Anti-tumor effects of rigosertib in high-risk neuroblastoma.
Radke K, Hansson K, Sjölund J, ..., Gisselsson D, Bexell D
Transl Oncol 14 (8) 101149 [2021-08-00; online 2021-06-09]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Single‐cell sequencing in translational cancer research and challenges to meet clinical diagnostic needs
Pfisterer U, Bräunig J, Brattås P, ..., Karlsson G, Fioretos T
Genes Chromosomes Cancer 60 (7) 504-524 [2021-07-00; online 2021-03-15]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Human Primary Airway Basal Cells Display a Continuum of Molecular Phases from Health to Disease in Chronic Obstructive Pulmonary Disease.
Wijk SC, Prabhala P, Michaliková B, ..., Westergren-Thorsson G, Magnusson M
Am J Respir Cell Mol Biol 65 (1) 103-113 [2021-07-00; online 2021-04-01]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Genomic and Phenotypic Evolution of Achromobacter xylosoxidans during Chronic Airway Infections of Patients with Cystic Fibrosis.
Khademi SMH, Gabrielaite M, Paulsson M, ..., Marvig RL, Påhlman LI
mSystems - (-) e0052321 [2021-06-29; online 2021-06-29]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Trailblazing precision medicine in Europe: A joint view by Genomic Medicine Sweden and the Centers for Personalized Medicine, ZPM, in Germany.
Stenzinger A, Edsjö A, Ploeger C, ..., Rosenquist R, GMS working groups and ZPM working groups
Semin. Cancer Biol. - (-) - [2021-05-24; online 2021-05-24]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Clinical Genomics Stockholm [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed
[Precision diagnostics and therapy in hematological malignancies].
Hellström Lindberg E, Cavelier L, Cammenga J, ..., Fioretos T, Rosenquist R
Lakartidningen 118 (-) - [2021-05-10; online 2021-05-10]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Activation of endogenous retroviruses during brain development causes an inflammatory response.
Jönsson ME, Garza R, Sharma Y, ..., Jern P, Jakobsson J
EMBO J. 40 (9) e106423 [2021-05-03; online 2021-03-01]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
High-Throughput and Automated Acoustic Trapping of Extracellular Vesicles to Identify microRNAs With Diagnostic Potential for Prostate Cancer.
Ku A, Fredsøe J, Sørensen KD, ..., Lilja H, Ceder Y
Front Oncol 11 (-) 631021 [2021-03-25; online 2021-03-25]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Prevalence of germline pathogenic variants in 22 cancer susceptibility genes in Swedish pediatric cancer patients.
von Stedingk K, Stjernfelt KJ, Kvist A, ..., Olsson H, Øra I
Sci Rep 11 (1) 5307 [2021-03-05; online 2021-03-05]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Distinct mechanisms of resistance to fulvestrant treatment dictate level of ER independence and selective response to CDK inhibitors in metastatic breast cancer.
Kaminska K, Akrap N, Staaf J, ..., Bosch A, Honeth G
Breast Cancer Res. 23 (1) 26 [2021-02-18; online 2021-02-18]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
multiclassPairs: An R package to train multiclass pairbased classifier.
Marzouka NA, Eriksson P
Bioinformatics - (-) - [2021-02-05; online 2021-02-05]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Isolation of high-yield and -quality RNA from human precision-cut lung slices for RNA-sequencing and computational integration with larger patient cohorts.
Stegmayr J, Alsafadi HN, Langwiński W, ..., Leigh ND, Wagner DE
Am J Physiol Lung Cell Mol Physiol 320 (2) L232-L240 [2021-02-01; online 2020-10-28]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
MAP3K6 Mutations in a Neurovascular Disease Causing Stroke, Cognitive Impairment, and Tremor.
Ilinca A, Englund E, Samuelsson S, ..., Lindgren AG, Puschmann A
Neurol Genet 7 (1) e548 [2021-02-00; online 2021-01-21]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Hypoxia inducible factor-2α importance for migration, proliferation, and self-renewal of trunk neural crest cells.
Niklasson CU, Fredlund E, Monni E, ..., Bronner ME, Mohlin S
Dev. Dyn. 250 (2) 191-236 [2021-02-00; online 2020-09-26]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
BL1391: an established cell line from a human malignant peripheral nerve sheath tumor with unique genomic features.
Tolomeo D, Agostini A, Macchia G, ..., Mertens F, Storlazzi CT
Hum Cell 34 (1) 238-245 [2021-01-00; online 2020-08-27]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]

Year 2020

PubMed DOI Crossref
Associations between serum concentrations of perfluoroalkyl substances and DNA methylation in women exposed through drinking water: A pilot study in Ronneby, Sweden.
Xu Y, Jurkovic-Mlakar S, Lindh CH, ..., Jakobsson K, Engström K
Environ Int 145 (-) 106148 [2020-12-00; online 2020-09-30]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Recurring urothelial carcinomas show genomic rearrangements incompatible with a direct relationship.
Marzouka NA, Lindgren D, Eriksson P, ..., Axelson H, Höglund M
Sci Rep 10 (1) 19539 [2020-11-11; online 2020-11-11]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Inducible Deletion of YAP and TAZ in Adult Mouse Smooth Muscle Causes Rapid and Lethal Colonic Pseudo-Obstruction.
Daoud F, Holmberg J, Alajbegovic A, ..., Swärd K, Albinsson S
Cellular and Molecular Gastroenterology and Hepatology 11 (2) 623-637 [2020-09-28; online 2020-09-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Therapeutic targeting of KSP in preclinical models of high-risk neuroblastoma.
Hansson K, Radke K, Aaltonen K, ..., Gisselsson D, Bexell D
Sci Transl Med 12 (562) - [2020-09-23; online 2020-09-25]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
A dynamic mutational landscape associated with an inter-regionally diverse immune response in malignant rhabdoid tumour.
Yasui H, Valind A, Karlsson J, ..., Backman T, Gisselsson D
J. Pathol. 252 (1) 22-28 [2020-09-00; online 2020-07-22]
Clinical Genomics Clinical Genomics Lund
PubMed DOI Crossref
13q12.2 deletions in acute lymphoblastic leukemia lead to upregulation of FLT3 through enhancer hijacking.
Yang M, Safavi S, Woodward EL, ..., Nord KH, Paulsson K
Blood 136 (8) 946-956 [2020-08-20; online 2020-05-10]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Multiplex profiling of serum proteins in solution using barcoded antibody fragments and next generation sequencing.
Brofelth M, Ekstrand AI, Gour S, ..., Axelsson U, Borrebaeck CAK
Commun Biol 3 (1) 339 [2020-07-03; online 2020-07-03]
Clinical Genomics Clinical Genomics Lund
PubMed DOI Crossref
PHF1 fusions cause distinct gene expression and chromatin accessibility profiles in ossifying fibromyxoid tumors and mesenchymal cells.
Hofvander J, Jo VY, Fletcher CDM, ..., Magnusson L, Mertens F
Mod. Pathol. 33 (7) 1331-1340 [2020-07-00; online 2020-01-13]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Molecular changes during progression from nonmuscle invasive to advanced urothelial carcinoma.
Sjödahl G, Eriksson P, Patschan O, ..., Liedberg F, Höglund M
Int. J. Cancer 146 (9) 2636-2647 [2020-05-01; online 2019-11-14]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Recurrent Fusions Between YAP1 and KMT2A in Morphologically Distinct Neoplasms Within the Spectrum of Low-grade Fibromyxoid Sarcoma and Sclerosing Epithelioid Fibrosarcoma.
Puls F, Agaimy A, Flucke U, ..., Arbajian E, Mertens F
Am. J. Surg. Pathol. 44 (5) 594-606 [2020-05-00; online 2020-01-09]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Early growth response 1 regulates hematopoietic support and proliferation in human primary bone marrow stromal cells.
Li H, Lim HC, Zacharaki D, ..., Hansson J, Scheding S
Haematologica 105 (5) 1206-1215 [2020-05-00; online 2019-08-01]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Deep sequencing of myxoinflammatory fibroblastic sarcoma.
Arbajian E, Hofvander J, Magnusson L, Mertens F
Genes Chromosomes Cancer 59 (5) 309-317 [2020-05-00; online 2020-01-31]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Clonal competition within complex evolutionary hierarchies shapes AML over time.
Sandén C, Lilljebjörn H, Orsmark Pietras C, ..., Ågerstam H, Fioretos T
Nat Commun 11 (1) 579 [2020-02-05; online 2020-02-05]
Clinical Genomics Clinical Genomics Lund
PubMed DOI Crossref
Genomic and transcriptomic features of dermatofibrosarcoma protuberans: Unusual chromosomal origin of the COL1A1-PDGFB fusion gene and synergistic effects of amplified regions in tumor development.
Köster J, Arbajian E, Viklund B, ..., Mandahl N, Mertens F
Cancer Genet 241 (-) 34-41 [2020-02-00; online 2019-12-10]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Clinical Genomics Lund

Year 2019

PubMed DOI Crossref
Undifferentiated pleomorphic sarcomas with PRDM10 fusions have a distinct gene expression profile.
Hofvander J, Puls F, Pillay N, ..., Nilsson J, Mertens F
J. Pathol. 249 (4) 425-434 [2019-12-00; online 2019-08-27]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Molecular pathology of the luminal class of urothelial tumors.
Bernardo C, Eriksson P, Marzouka NA, ..., Sjödahl G, Höglund M
J. Pathol. 249 (3) 308-318 [2019-11-00; online 2019-08-27]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Molecular subtypes applied to a population-based modern cystectomy series do not predict cancer-specific survival.
Kollberg P, Chebil G, Eriksson P, Sjödahl G, Liedberg F
Urol Oncol 37 (10) 791-799 [2019-10-00; online 2019-05-02]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
FLT3N676K drives acute myeloid leukemia in a xenograft model of KMT2A-MLLT3 leukemogenesis.
Hyrenius-Wittsten A, Pilheden M, Falqués-Costa A, ..., Järås M, Hagström-Andersson AK
Leukemia 33 (9) 2310-2314 [2019-09-00; online 2019-04-05]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Gene fusion involving the insulin-like growth factor 1 receptor in an ALK-negative inflammatory myofibroblastic tumour.
Piarulli G, Puls F, Wängberg B, ..., Arbajian E, Mertens F
Histopathology 74 (7) 1098-1102 [2019-06-00; online 2019-04-24]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
A urinary extracellular vesicle microRNA biomarker discovery pipeline; from automated extracellular vesicle enrichment by acoustic trapping to microRNA sequencing.
Ku A, Ravi N, Yang M, ..., Lilja H, Ceder Y
PLoS ONE 14 (5) e0217507 [2019-05-29; online 2019-05-29]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia.
Yang M, Vesterlund M, Siavelis I, ..., Lehtiö J, Paulsson K
Nat Commun 10 (1) 1519 [2019-04-03; online 2019-04-03]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service] Global Proteomics and Proteogenomics [Technology development]

Year 2018

PubMed DOI Crossref
Transcriptional landscape of B cell precursor acute lymphoblastic leukemia based on an international study of 1,223 cases.
Li JF, Dai YT, Lilljebjörn H, ..., Chen SJ, Huang JY
Proc. Natl. Acad. Sci. U.S.A. 115 (50) E11711-E11720 [2018-12-11; online 2018-11-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Convergent evolution of 11p allelic loss in multifocal Wilms tumors arising in WT1 mutation carriers.
Valind A, Wessman S, Pal N, ..., Sandstedt B, Gisselsson D
Pediatr Blood Cancer 65 (11) e27301 [2018-11-00; online 2018-07-03]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Neuroblastoma with flat genomic profile: a question of representativity?
Valind A, Öra I, Mertens F, Gisselsson D
BMJ Case Reports 2018 (-) bcr-2018-225568 [2018-09-08; online 2018-09-08]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Gastrointestinal microbiota contributes to the development of murine transfusion-related acute lung injury.
Kapur R, Kim M, Rebetz J, ..., Speck ER, Semple JW
Blood Adv 2 (13) 1651-1663 [2018-07-10; online 2018-07-12]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling.
Roswall P, Bocci M, Bartoschek M, ..., Eriksson U, Pietras K
Nat. Med. 24 (4) 463-473 [2018-05-00; online 2018-03-12]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Clinical Value of RNA Sequencing-Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network-Breast Initiative.
Brueffer C, Vallon-Christersson J, Grabau D, ..., Borg Å, Saal LH
JCO Precision Oncology 2 (2) 1-18 [2018-03-09; online 2018-03-09]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Isolated myelosarcoma is characterized by recurrent NFE2 mutations and concurrent preleukemic clones in the bone marrow.
Lazarevic V, Orsmark-Pietras C, Lilljebjörn H, ..., Juliusson G, Fioretos T
Blood 131 (5) 577-581 [2018-02-01; online 2017-11-30]
Clinical Genomics [Collaborative] Clinical Genomics Lund [Collaborative]
PubMed DOI Crossref
Minimizing inequality in access to precision medicine in breast cancer by real-time population-based molecular analysis in the SCAN-B initiative.
Rydén L, Loman N, Larsson C, ..., Saal LH, Borg Å
Br J Surg 105 (2) e158-e168 [2018-01-00; online 2018-01-18]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Collaborative] Clinical Genomics Lund [Collaborative]

Year 2017

PubMed DOI Crossref
New oncogenic subtypes in pediatric B-cell precursor acute lymphoblastic leukemia.
Lilljebjörn H, Fioretos T
Blood 130 (12) 1395-1401 [2017-09-21; online 2017-08-04]
Clinical Genomics [Collaborative] Clinical Genomics Lund [Collaborative]
PubMed DOI Crossref
Gene Expression Profiling of Large Cell Lung Cancer Links Transcriptional Phenotypes to the New Histological WHO 2015 Classification
Karlsson A, Brunnström H, Micke P, ..., Planck M, Staaf J
Journal of Thoracic Oncology 12 (8) 1257-1267 [2017-08-00; online 2017-08-00]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures.
Davies H, Glodzik D, Morganella S, ..., Stratton MR, Nik-Zainal S
Nat. Med. 23 (4) 517-525 [2017-04-00; online 2017-03-13]
Clinical Genomics [Collaborative] Clinical Genomics Lund [Collaborative]
PubMed DOI Crossref
Identification of two distinct mesenchymal stromal cell populations in human malignant glioma.
Svensson A, Ramos-Moreno T, Eberstål S, Scheding S, Bengzon J
J. Neurooncol. 131 (2) 245-254 [2017-01-00; online 2016-10-18]
Clinical Genomics [Service] Clinical Genomics Lund [Service]

Year 2016

PubMed DOI Crossref
Identification of ETV6-RUNX1-like and DUX4-rearranged subtypes in paediatric B-cell precursor acute lymphoblastic leukaemia.
Lilljebjörn H, Henningsson R, Hyrenius-Wittsten A, ..., Fontes M, Fioretos T
Nat Commun 7 (-) 11790 [2016-06-06; online 2016-06-06]
Clinical Genomics [Collaborative] Clinical Genomics Lund [Collaborative]

Year 2012

PubMed
Evaluating the effectiveness of clinical medical librarian programs: a systematic review of the literature. J Med Libr Assoc 92(1) January 2004.
Wagner KC, Byrd GD
J Med Libr Assoc 100 (4 Suppl) J [2012-10-00; online 2013-03-21]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
SciLifeLab Data Centre
Publications 9.5.1