Advanced FISH Technologies

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SciLifeLab Infrastructure Pilot Unit Since 2021.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2021

Ended: 2022

Year 2019

PubMed DOI Crossref
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
Cell 179 (7) 1647-1660.e19 [2019-12-12; online 2019-12-14]
Advanced FISH Technologies Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG) [Service] In Situ Sequencing (ISS) [Technology development] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture
Gelali E, Girelli G, Matsumoto M, ..., Crosetto N, Bienko M
Nat Commun 10 (1) - [2019-12-00; online 2019-04-09]
Advanced FISH Technologies [Technology development] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

Year 2018

PubMed DOI Crossref
RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.
Wu C, Simonetti M, Rossell C, ..., Crosetto N, Nilsson M
Commun Biol 1 (-) 209 [2018-11-28; online 2018-11-28]
Advanced FISH Technologies [Technology development] In Situ Sequencing (ISS) [Technology development]
PubMed DOI Crossref
An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.
Gelali E, Custodio J, Girelli G, ..., Crosetto N, Bienko M
Methods Mol. Biol. 1766 (-) 303-333 [2018-04-02; online 2018-04-02]
Advanced FISH Technologies [Technology development]

Year 2017

PubMed DOI Crossref
Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer.
Asim M, Tarish F, Zecchini HI, ..., Neal D, Helleday T
Nat Commun 8 (1) 374 [2017-08-29; online 2017-08-29]
Advanced FISH Technologies [Collaborative]
PubMed DOI Crossref
Quantification of HER2 and estrogen receptor heterogeneity in breast cancer by single-molecule RNA fluorescence in situ hybridization.
Annaratone L, Simonetti M, Wernersson E, ..., Sapino A, Crosetto N
Oncotarget 8 (12) 18680-18698 [2017-03-21; online 2017-04-21]
Advanced FISH Technologies [Collaborative]

Year 2016

PubMed DOI Crossref
Massive and parallel expression profiling using microarrayed single-cell sequencing.
Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J
Nat Commun 7 (-) 13182 [2016-10-14; online 2016-10-14]
Advanced FISH Technologies Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2014

PubMed DOI Crossref
Inter- and intratumoral heterogeneity of BCL2 correlates with IgH expression and prognosis in follicular lymphoma.
Barreca A, Martinengo C, Annaratone L, ..., van Oudenaarden A, Chiarle R
Blood Cancer J 4 (-) e249 [2014-10-10; online 2014-10-10]
Advanced FISH Technologies [Collaborative]
PubMed DOI Crossref
FuseFISH: robust detection of transcribed gene fusions in single cells.
Semrau S, Crosetto N, Bienko M, ..., Chiarle R, van Oudenaarden A
Cell Rep 6 (1) 18-23 [2014-01-16; online 2013-12-27]
Advanced FISH Technologies [Technology development]

Year 2013

PubMed DOI Crossref
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.
Bienko M, Crosetto N, Teytelman L, ..., Itzkovitz S, van Oudenaarden A
Nat. Methods 10 (2) 122-124 [2013-02-00; online 2012-12-23]
Advanced FISH Technologies [Technology development]
SciLifeLab Data Centre
Publications 9.5.1