Friedländer MR

Detection of transcriptome-wide microRNA-target interactions in single cells with agoTRIBE.

Sekar V, Mármol-Sánchez E, Kalogeropoulos P, ..., Biryukova I, Friedländer MR

Nat. Biotechnol. - (-) - [2023-09-21; online 2023-09-21]

Bioinformatics Compute and Storage [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Historical RNA expression profiles from the extinct Tasmanian tiger.

Mármol-Sánchez E, Fromm B, Oskolkov N, ..., Dalén L, Friedländer MR

Genome Res. 33 (8) 1299-1316 [2023-08-00; online 2023-07-18]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

agoTRIBE detects miRNA-target interactions transcriptome-wide in single cells

Sekar V, Mármol-Sánchez E, Kalogeropoulos P, ..., Biryukova I, Friedländer MR

- - (-) - [2022-08-11; online 2022-08-11]

Eukaryotic Single Cell Genomics (ESCG) [Service]

Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.

Tarbier M, Mackowiak SD, Frade J, ..., Gallant CJ, Friedländer MR

Nat Commun 11 (1) 5445 [2020-10-28; online 2020-10-28]

Bioinformatics Compute and Storage [Service] Eukaryotic Single Cell Genomics (ESCG) [Service]