Publications 2019

Title Authors Journal Published Online
Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm Moreno-Romero J, Del Toro-De León G, Yadav VK, Santos-González J, Köhler C Genome Biol. 20 (1) - 2019-12-00 2019-02-21
Transmission dynamics study of tuberculosis isolates with whole genome sequencing in southern Sweden Alaridah N, Hallbäck ET, Tångrot J, ..., Kaijser B, Godaly G Sci Rep 9 (1) - 2019-12-00 2019-03-20
Transcriptomic and proteomic analyses reveal new insights into the regulation of immune pathways during adenovirus type 2 infection Zhao H, Chen M, Valdés A, Lind SB, Pettersson U BMC Microbiol. 19 (1) - 2019-12-00 2019-01-14
Mycobacterium tuberculosis virulence inhibitors discovered by Mycobacterium marinum high-throughput screening Tükenmez H, Edström I, Ummanni R, ..., Elofsson M, Larsson C Sci Rep 9 (1) - 2019-12-00 2019-01-10
Exploring the genetics of trotting racing ability in horses using a unique Nordic horse model Velie BD, Lillie M, Fegraeus KJ, ..., Strand E, Lindgren G BMC Genomics 20 (1) - 2019-12-00 2019-02-04
Genetic variation in CADM2 as a link between psychological traits and obesity Morris J, Bailey MES, Baldassarre D, ..., Smith DJ, Strawbridge RJ Sci Rep 9 (1) - 2019-12-00 2019-05-14
RNA Sequencing Provides Novel Insights into the Transcriptome of Aldosterone Producing Adenomas Backman S, Åkerström T, Maharjan R, ..., Hellman P, Björklund P Sci Rep 9 (1) - 2019-12-00 2019-04-18
Mercury methylating microbial communities of boreal forest soils Xu J, Buck M, Eklöf K, ..., Bertilsson S, Bravo AG Sci Rep 9 (1) - 2019-12-00 2019-01-24
The genomics of major psychiatric disorders in a large pedigree from Northern Sweden Szatkiewicz J, Crowley JJ, Adolfsson AN, ..., Adolfsson R, Sullivan PF Transl Psychiatry 9 (1) - 2019-12-00 2019-02-04
Breast cancer quantitative proteome and proteogenomic landscape Johansson HJ, None , Socciarelli F, ..., Børresen-Dale AL, Lehtiö J Nat Commun 10 (1) - 2019-12-00 2019-04-08
Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing Hård J, Al Hakim E, Kindblom M, ..., Mold JE, Frisén J Genome Biol. 20 (1) - 2019-12-00 2019-04-01
Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development Tiklová K, Björklund ÅK, Lahti L, ..., Parmar M, Perlmann T Nat Commun 10 (1) - 2019-12-00 2019-02-04
Genetical Genomics of Tonic Immobility in the Chicken. Fogelholm J, Inkabi S, Höglund A, ..., Henriksen R, Wright D Genes 10 (5) - 2019-05-07 2019-05-07
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines Lampa S, Dahlö M, Alvarsson J, Spjuth O Gigascience 8 (5) - 2019-05-01 2019-04-26
Genotype‐free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data Warmuth VM, Ellegren H Mol Ecol Resour 19 (3) 586-596 2019-05-00 2019-04-17
Mic60 exhibits a coordinated clustered distribution along and across yeast and mammalian mitochondria Stoldt S, Stephan T, Jans DC, ..., Hell SW, Jakobs S Proc Natl Acad Sci USA - (-) 201820364 2019-04-26 2019-04-26
EnsembleCNV: an ensemble machine learning algorithm to identify and genotype copy number variation using SNP array data. Zhang Z, Cheng H, Hong X, ..., Wang X, Hao K Nucleic Acids Res. 47 (7) e39 2019-04-23 2019-02-06
A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture. Kharazmi M, Michaëlsson K, Schilcher J, ..., Wadelius M, Hallberg P Calcif. Tissue Int. - (-) - 2019-04-20 2019-04-20
Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions Sobol M, Klar J, Laan L, ..., Falk A, Dahl N Mol Neurobiol - (-) - 2019-04-13 2019-04-13
A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds. Wallberg A, Bunikis I, Pettersson OV, ..., Robinson GE, Webster MT BMC Genomics 20 (1) 275 2019-04-08 2019-04-08
Asthma and affective traits in adults: a genetically informative study Lehto K, Pedersen NL, Almqvist C, Lu Y, Brew BK Eur Respir J - (-) 1802142 2019-04-07 2019-04-07
High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis Vázquez Bernat N, Corcoran M, Hardt U, ..., Martin M, Karlsson Hedestam GB Front Immunol 10 (-) - 2019-04-05 2019-04-05
Parental Education and Genetics of BMI from Infancy to Old Age: A Pooled Analysis of 29 Twin Cohorts Silventoinen K, Jelenkovic A, Latvala A, ..., Sørensen TIA, Kaprio J Obesity - (-) - 2019-04-05 2019-04-05
B cell profiling in malaria reveals expansion and remodelling of CD11c+ B cell subsets. Sundling C, Rönnberg C, Yman V, ..., Persson KE, Färnert A JCI Insight 5 (-) - 2019-04-02 2019-04-02
Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct Ferreira MAR, Mathur R, Vonk JM, ..., Koppelman GH, Almqvist C The American Journal of Human Genetics 104 (4) 665-684 2019-04-00 2019-04-00
Multi-ancestry genome-wide gene–smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids Bentley AR, None , Sung YJ, ..., None , None Nat Genet 51 (4) 636-648 2019-04-00 2019-03-29
Leukocytosis is associated with retinopathy of prematurity in extremely preterm infants. Lundgren P, Klevebro S, Brodin P, ..., Hallberg B, Hellström A Acta Paediatr. - (-) - 2019-03-28 2019-03-28
A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis Rentoft M, Svensson D, Sjödin A, ..., Melin BS, Johansson E PLoS ONE 14 (3) e0213350 2019-03-27 2019-03-27
A novel human in vitro papillomavirus type 16 positive tonsil cancer cell line with high sensitivity to radiation and cisplatin. Forslund O, Sugiyama N, Wu C, ..., Wennerberg J, Ekblad L BMC Cancer 19 (1) 265 2019-03-25 2019-03-25
Subsequent Event Risk in Individuals with Established Coronary Heart Disease: Design and Rationale of the GENIUS-CHD Consortium. Patel R, Tragante V, Schmidt AF, ..., Hingorani AD, Asselbergs FW Circ Genom Precis Med - (-) - 2019-03-21 2019-03-21
Association of Chromosome 9p21 with Subsequent Coronary Heart Disease Events: A GENIUS-CHD Study of Individual Participant Data. Patel RS, Schmidt AF, Tragante V, ..., Hingorani AD, Asselbergs FW Circ Genom Precis Med - (-) - 2019-03-21 2019-03-21
An ABCA4 loss-of-function mutation causes a canine form of Stargardt disease Mäkeläinen S, Gòdia M, Hellsand M, ..., Andersson G, Bergström TF PLoS Genet. 15 (3) e1007873 2019-03-19 2019-03-19
Detecting selection signatures in three Iranian sheep breeds Manzari Z, Mehrabani‐Yeganeh H, Nejati‐Javaremi A, Moradi MH, Gholizadeh M Anim Genet - (-) - 2019-03-18 2019-03-18
The repertoire of maternal anti-viral antibodies in human newborns. Pou C, Nkulikiyimfura D, Henckel E, ..., Bohlin K, Brodin P Nat. Med. - (-) - 2019-03-18 2019-03-18
Extended insight into the Mycobacterium chelonae-abscessus complex through whole genome sequencing of Mycobacterium salmoniphilum outbreak and Mycobacterium salmoniphilum-like strains. Behra PRK, Das S, Pettersson BMF, ..., Ennis DG, Kirsebom LA Sci Rep 9 (1) 4603 2019-03-14 2019-03-14
Individual and stable autoantibody repertoires in healthy individuals. Neiman M, Hellström C, Just D, ..., Uhlén M, Nilsson P Autoimmunity - (-) 1-11 2019-03-05 2019-03-05
A rare regulatory variant in the MEF2D gene affects gene regulation and splicing and is associated with a SLE sub-phenotype in Swedish cohorts Farias FHG, Dahlqvist J, Kozyrev SV, ..., Rönnblom L, Lindblad-Toh K Eur J Hum Genet 27 (3) 432-441 2019-03-01 2018-11-20
Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution. Justice AE, Karaderi T, Highland HM, ..., North KE, Lindgren CM Nat. Genet. 51 (3) 452-469 2019-03-00 2019-02-18
A Phenotypic Screening Assay Identifies Modulators of Diamond Blackfan Anemia Siva K, Ek F, Chen J, ..., Lundbäck T, Flygare J SLAS DISCOVERY: Advancing Life Sciences R&D 24 (3) 304-313 2019-03-00 2019-02-20
New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries. Shrine N, Guyatt AL, Erzurumluoglu AM, ..., Tobin MD, Wain LV Nat. Genet. 51 (3) 481-493 2019-03-00 2019-02-25
Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk. Jansen IE, Savage JE, Watanabe K, ..., Andreassen OA, Posthuma D Nat. Genet. 51 (3) 404-413 2019-03-00 2019-01-07
Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard Andrade P, Pinho C, Pérez i de Lanuza G, ..., Andersson L, Carneiro M Proc Natl Acad Sci USA - (-) 201820320 2019-02-28 2019-02-28
A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology. de Vries PS, Sabater-Lleal M, Huffman JE, ..., O'Donnell CJ, Smith NL Blood 133 (9) 967-977 2019-02-28 2019-01-14
Exome sequencing in 51 early onset non-familial CRC cases Thutkawkorapin J, Lindblom A, Tham E Mol Genet Genomic Med - (-) e605 2019-02-27 2019-02-27
Rostania revised: testing generic delimitations in Collemataceae (Peltigerales, Lecanoromycetes) Košuthová A, Westberg M, Otálora MAG, Wedin M MycoKeys 47 (-) 17-33 2019-02-20 2019-02-20
Crystal Structure and Substrate Specificity of the 8-oxo-dGTP Hydrolase NUDT1 from Arabidopsis thaliana Jemth AS, Scaletti E, Carter M, Helleday T, Stenmark P Biochemistry 58 (7) 887-899 2019-02-19 2019-01-07
Genetics and epigenetics in primary Sjögren's syndrome. Imgenberg-Kreuz J, Rasmussen A, Sivils K, Nordmark G Rheumatology (Oxford) - (-) - 2019-02-15 2019-02-15
Association of the coronary artery disease risk gene GUCY1A3 with ischaemic events after coronary intervention. Kessler T, Wolf B, Eriksson N, ..., Kastrati A, Schunkert H Cardiovasc. Res. - (-) - 2019-02-14 2019-02-14
Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution Masuda T, Sankowski R, Staszewski O, ..., Stadelmann C, Prinz M Nature - (-) - 2019-02-13 2019-02-13
Mass cytometry identifies distinct CD4+ T cell clusters distinguishing HIV-1–infected patients according to antiretroviral therapy initiation Bekele Y, Lakshmikanth T, Chen Y, ..., Brodin P, Chiodi F JCI Insight 4 (3) - 2019-02-07 2019-02-07
Introgression of resistance to Rhopalosiphum padi L. from wild barley into cultivated barley facilitated by doubled haploid and molecular marker techniques. Åhman I, Bengtsson T Theor. Appl. Genet. - (-) - 2019-02-02 2019-02-02
Disentangling the genetics of lean mass. Karasik D, Zillikens MC, Hsu YH, ..., Kiel DP, Ohlsson C Am. J. Clin. Nutr. 109 (2) 276-287 2019-02-01 2019-02-06
Insights into hydrothermal aging of phosphorus-poisoned Cu-SSZ-13 for NH3-SCR Xie K, Woo J, Bernin D, ..., Kamasamudram K, Olsson L Applied Catalysis B: Environmental 241 (-) 205-216 2019-02-00 2019-02-00
Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. Karlsson Linnér R, Biroli P, Kong E, ..., Koellinger PD, Beauchamp JP Nat. Genet. 51 (2) 245-257 2019-02-00 2019-01-14
Whole-genome sequencing identifies complex contributions to genetic risk by variants in genes causing monogenic systemic lupus erythematosus Almlöf JC, Nystedt S, Leonard D, ..., Sandling JK, Syvänen AC Hum Genet 138 (2) 141-150 2019-02-00 2019-02-01
Two Basidiomycete Fungi in the Cortex of Wolf Lichens Tuovinen V, Ekman S, Thor G, ..., Spribille T, Johannesson H Current Biology 29 (3) 476-483.e5 2019-02-00 2019-02-00
Corticosteroids protect infected cells against mycobacterial killing in vitro Tükenmez H, Edström I, Kalsum S, ..., Elofsson M, Larsson C Biochemical and Biophysical Research Communications - (-) - 2019-02-00 2019-02-00
Structural Basis of Cross‐Reactivity of Anti–Citrullinated Protein Antibodies Ge C, Xu B, Liang B, ..., Dobritzsch D, Holmdahl R Arthritis Rheumatol 71 (2) 210-221 2019-02-00 2019-01-04
The antimicrobial protein S100A12 identified as a potential autoantigen in a subgroup of atopic dermatitis patients. Mikus M, Johansson C, Acevedo N, Nilsson P, Scheynius A Clin Transl Allergy 9 (-) 6 2019-01-31 2019-01-31
Pandemrix-induced narcolepsy is associated with genes related to immunity and neuronal survival. Hallberg P, Smedje H, Eriksson N, ..., Wadelius M, Swedegene EBioMedicine - (-) - 2019-01-30 2019-01-30
Fam83F induces p53 stabilisation and promotes its activity. Salama M, Benitez-Riquelme D, Elabd S, ..., Davidson G, Blattner C Cell Death Differ. - (-) - 2019-01-28 2019-01-28
Ultrasensitive immunoprofiling of plasma extracellular vesicles identifies syndecan-1 as a potential tool for minimally invasive diagnosis of glioma. Indira Chandran V, Welinder C, Månsson AS, ..., Sundgren PC, Belting M Clin. Cancer Res. - (-) - 2019-01-24 2019-01-24
Systems-Level Immune Monitoring by Mass Cytometry. Lakshmikanth T, Brodin P Methods Mol. Biol. 1913 (-) 33-48 2019-01-23 2019-01-23
Altered human oligodendrocyte heterogeneity in multiple sclerosis Jäkel S, Agirre E, Falcão AM, ..., Williams A, Castelo-Branco G Nature - (-) - 2019-01-23 2019-01-23
Transformation of mature mouse B cells into malignant plasma cells in vitro via introduction of defined genetic elements. Högstrand K, Lindvall JM, Sundblad A, Grandien A Eur. J. Immunol. - (-) - 2019-01-21 2019-01-21
Structure of the DP1–DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases Raia P, Carroni M, Henry E, ..., Delarue M, Sauguet L PLoS Biol. 17 (1) e3000122 2019-01-18 2019-01-18
The genetic diversity and evolution of diatom-diazotroph associations highlights traits favoring symbiont integration. Caputo A, Nylander JAA, Foster RA FEMS Microbiol. Lett. - (-) - 2019-01-09 2019-01-09
Decreased Snow Cover Stimulates Under-Ice Primary Producers but Impairs Methanotrophic Capacity Garcia SL, Szekely AJ, Bergvall C, Schattenhofer M, Peura S mSphere 4 (1) - 2019-01-09 2019-01-09
The Versatility of SMRT Sequencing. Hestand MS, Ameur A Genes 10 (1) - 2019-01-04 2019-01-04
Systems-level patterns emerge Brodin P Nat Rev Immunol - (-) - 2019-01-03 2019-01-03
Single-Molecule Sequencing: Towards Clinical Applications. Ameur A, Kloosterman WP, Hestand MS Trends Biotechnol. 37 (1) 72-85 2019-01-01 2018-08-13
Soil organic carbon depletion and degradation in surface soil after long-term non-growing season warming in High Arctic Svalbard Semenchuk PR, Krab EJ, Hedenström M, ..., Ancin-Murguzur FJ, Cooper EJ Science of The Total Environment 646 (-) 158-167 2019-01-00 2019-01-00
Auxin Function in the Brown Alga Dictyota dichotoma Bogaert KA, Blommaert L, Ljung K, Beeckman T, De Clerck O Plant Physiol. 179 (1) 280-299 2019-01-00 2018-11-12
A standardized protocol for comparable analysis of GSH/GSSG by UHPLC-ESI-MSMS for human plasma Claeson AS, Gouveia-Figueira S, Stenlund H, Johansson AI Journal of Chromatography B 1104 (-) 67-72 2019-01-00 2019-01-00
Exploring rare and low-frequency variants in the Saguenay–Lac-Saint-Jean population identified genes associated with asthma and allergy traits Morin A, Madore AM, Kwan T, ..., Pastinen T, Laprise C Eur J Hum Genet 27 (1) 90-101 2019-01-00 2018-09-11
Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central Chile. Durán RE, Barra-Sanhueza B, Salvà-Serra F, ..., Moore ERB, Seeger M Microbiol Resour Announc 8 (5) - 2019-01-00 2019-01-31
Genetic risk for neuroticism predicts emotional health depending on childhood adversity Lehto K, Karlsson I, Lundholm C, Pedersen NL Psychol. Med. 49 (02) 260-267 2019-01-00 2018-03-26
Role of OmpA1 and OmpA2 in Aggregatibacter actinomycetemcomitans and Aggregatibacter aphrophilus serum resistance Lindholm M, Min Aung K, Nyunt Wai S, Oscarsson J Journal of Oral Microbiology 11 (1) 1536192 2019-01-00 2018-10-26
Tissue-specific hormone profiles from woody poplar roots under bending stress De Zio E, Trupiano D, Karady M, ..., Ljung K, Scippa GS Physiol Plantarum 165 (1) 101-113 2019-01-00 2018-10-15
Mosaic loss of chromosome Y in leukocytes matters Forsberg LA, Halvardson J, Rychlicka-Buniowska E, ..., Ingelsson M, Dumanski JP Nat Genet 51 (1) 4-7 2019-01-00 2018-10-29
SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization Orre LM, Vesterlund M, Pan Y, ..., Fredlund E, Lehtiö J Molecular Cell 73 (1) 166-182.e7 2019-01-00 2019-01-00
ZBED6 negatively regulates insulin production, neuronal differentiation, and cell aggregation in MIN6 cells Wang X, Jiang L, Wallerman O, ..., Welsh N, Andersson L The FASEB Journal 33 (1) 88-100 2019-01-00 2019-01-00
Automated Cell Processing for Mass Cytometry Experiments. Mikes J, Olin A, Lakshmikanth T, Chen Y, Brodin P Methods Mol. Biol. 1989 (-) 111-123 2019-00-00 -