Bioinformatics and Expression Analysis (BEA)

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Regional Facility of National Interest 2013–2016.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2013

Ended: 2016

Year 2016

PubMed DOI Crossref
Study on genetic stability in human urothelial cells in vitro.
Chamorro CI, Zeiai S, Reinfeldt Engberg G, ..., Nordenskjöld A, Fossum M
J Tissue Eng Regen Med - (-) - [2016-11-12; online 2016-11-12]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Stromal Hedgehog signalling is downregulated in colon cancer and its restoration restrains tumour growth.
Gerling M, Büller NV, Kirn LM, ..., van den Brink GR, Toftgård R
Nat Commun 7 (-) 12321 [2016-08-05; online 2016-08-05]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Gene-Expression Profiling Suggests Impaired Signaling via the Interferon Pathway in Cstb-/- Microglia.
Körber I, Katayama S, Einarsdottir E, ..., Lehesjoki AE, Joensuu T
PLoS ONE 11 (6) e0158195 [2016-06-29; online 2016-06-29]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Aerobic exercise augments muscle transcriptome profile of resistance exercise.
Lundberg TR, Fernandez-Gonzalo R, Tesch PA, Rullman E, Gustafsson T
Am. J. Physiol. Regul. Integr. Comp. Physiol. 310 (11) R1279-R1287 [2016-06-01; online 2016-04-13]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Regulating retrotransposon activity through the use of alternative transcription start sites.
Persson J, Steglich B, Smialowska A, ..., Nielsen O, Ekwall K
EMBO Rep. 17 (5) 753-768 [2016-05-00; online 2016-02-22]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
A role for PDGF-C/PDGFRα signaling in the formation of the meningeal basement membranes surrounding the cerebral cortex.
Andrae J, Gouveia L, Gallini R, ..., Eriksson U, Betsholtz C
Biol Open 5 (4) 461-474 [2016-04-15; online 2016-04-15]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Tissue and Serum miRNA Profile in Locally Advanced Breast Cancer (LABC) in Response to Neo-Adjuvant Chemotherapy (NAC) Treatment.
Al-Khanbashi M, Caramuta S, Alajmi AM, ..., Lui WO, Al-Moundhri MS
PLoS ONE 11 (4) e0152032 [2016-04-11; online 2016-04-11]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Single-cell transcriptome analysis of endometrial tissue.
Krjutškov K, Katayama S, Saare M, ..., Salumets A, Kere J
Hum. Reprod. 31 (4) 844-853 [2016-04-00; online 2016-02-13]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
mRNA and microRNA transcriptomics analyses in a murine model of dystrophin loss and therapeutic restoration.
Roberts TC, Blomberg KE, Smith CI, El Andaloussi S, Wood MJ
Genom Data 7 (-) 88-89 [2016-03-00; online 2015-12-02]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
The transcriptional coregulator MAML1 affects DNA methylation and gene expression patterns in human embryonic kidney cells.
Putnik M, Brodin D, Wojdacz TK, ..., Dahlman-Wright K, Wallberg AE
Mol. Biol. Rep. 43 (3) 141-150 [2016-03-00; online 2016-02-08]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Cellular High-Energy Cavitation Trauma - Description of a Novel In Vitro Trauma Model in Three Different Cell Types.
Cao Y, Risling M, Malm E, ..., Bolling MF, Sköld MK
Front Neurol 7 (-) 10 [2016-02-01; online 2016-02-01]
Bioinformatics and Expression Analysis (BEA) [Service]
PubMed DOI Crossref
Numerous Genes in Loci Associated With Body Fat Distribution Are Linked to Adipose Function.
Dahlman I, Rydén M, Brodin D, ..., Strawbridge RJ, Arner P
Diabetes 65 (2) 433-437 [2016-02-00; online 2016-01-23]
Bioinformatics and Expression Analysis (BEA) [Service]

Year 2015

PubMed DOI Crossref
A Combination of Culture Conditions and Gene Expression Analysis Can Be Used to Investigate and Predict hES Cell Differentiation Potential towards Male Gonadal Cells.
Kjartansdóttir KR, Reda A, Panula S, ..., Hovatta O, Stukenborg JB
PLoS ONE 10 (12) e0144029 [2015-12-02; online 2015-12-02]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Multi-level omics analysis in a murine model of dystrophin loss and therapeutic restoration.
Roberts TC, Johansson HJ, McClorey G, ..., El Andaloussi S, Wood MJ
Hum. Mol. Genet. 24 (23) 6756-6768 [2015-12-01; online 2015-09-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Bioenergetic cues shift FXR splicing towards FXRα2 to modulate hepatic lipolysis and fatty acid metabolism.
Correia JC, Massart J, de Boer JF, ..., Groen AK, Ruas JL
Mol Metab 4 (12) 891-902 [2015-12-00; online 2015-09-26]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Cytostatic Effect of Repeated Exposure to Simvastatin: A Mechanism for Chronic Myotoxicity Revealed by the Use of Mesodermal Progenitors Derived from Human Pluripotent Stem Cells.
Peric D, Barragan I, Giraud-Triboult K, ..., Laustriat D, Peschanski M
Stem Cells 33 (10) 2936-2948 [2015-10-00; online 2015-07-18]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
The epigenetic signature of subcutaneous fat cells is linked to altered expression of genes implicated in lipid metabolism in obese women.
Arner P, Sinha I, Thorell A, ..., Dahlman-Wright K, Dahlman I
Clin Epigenetics 7 (-) 93 [2015-09-08; online 2015-09-08]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
MicroRNA-132 enhances transition from inflammation to proliferation during wound healing.
Li D, Wang A, Liu X, ..., Ståhle M, Landén NX
J. Clin. Invest. 125 (8) 3008-3026 [2015-08-03; online 2015-06-30]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Potential role of milk fat globule membrane in modulating plasma lipoproteins, gene expression, and cholesterol metabolism in humans: a randomized study.
Rosqvist F, Smedman A, Lindmark-Månsson H, ..., Dahlman I, Risérus U
Am. J. Clin. Nutr. 102 (1) 20-30 [2015-07-00; online 2015-05-29]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depends on histone recycling in transcribed chromatin.
Svensson JP, Shukla M, Menendez-Benito V, ..., Allshire RC, Ekwall K
Genome Res. 25 (6) 872-883 [2015-06-00; online 2015-03-18]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
AP-1-mediated chromatin looping regulates ZEB2 transcription: new insights into TNFα-induced epithelial-mesenchymal transition in triple-negative breast cancer.
Qiao Y, Shiue CN, Zhu J, ..., Zhao C, Dahlman-Wright K
Oncotarget 6 (10) 7804-7814 [2015-04-10; online 2015-03-13]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Age-associated DNA methylation changes in immune genes, histone modifiers and chromatin remodeling factors within 5 years after birth in human blood leukocytes.
Acevedo N, Reinius LE, Vitezic M, ..., Greco D, Kere J
Clin Epigenetics 7 (-) 34 [2015-03-26; online 2015-03-26]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
The Fun30 chromatin remodeler Fft3 controls nuclear organization and chromatin structure of insulators and subtelomeres in fission yeast.
Steglich B, Strålfors A, Khorosjutina O, ..., Javerzat JP, Ekwall K
PLoS Genet. 11 (3) e1005101 [2015-03-00; online 2015-03-23]
Bioinformatics and Expression Analysis (BEA) NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
The roles of SNF2/SWI2 nucleosome remodeling enzymes in blood cell differentiation and leukemia.
Prasad P, Lennartsson A, Ekwall K
Biomed Res Int 2015 (-) 347571 [2015-02-19; online 2015-02-19]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Risk of childhood asthma is associated with CpG-site polymorphisms, regional DNA methylation and mRNA levels at the GSDMB/ORMDL3 locus.
Acevedo N, Reinius LE, Greco D, ..., Kere J, Söderhäll C
Hum. Mol. Genet. 24 (3) 875-890 [2015-02-01; online 2014-09-27]
Bioinformatics and Expression Analysis (BEA) Mutation Analysis Facility (MAF)
PubMed DOI Crossref
TGF-β1-Induced Epithelial-Mesenchymal Transition Promotes Monocyte/Macrophage Properties in Breast Cancer Cells.
Johansson J, Tabor V, Wikell A, Jalkanen S, Fuxe J
Front Oncol 5 (-) 3 [2015-01-26; online 2015-01-26]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Transcription-coupled recruitment of human CHD1 and CHD2 influences chromatin accessibility and histone H3 and H3.3 occupancy at active chromatin regions.
Siggens L, Cordeddu L, Rönnerblad M, Lennartsson A, Ekwall K
Epigenetics Chromatin 8 (1) 4 [2015-01-15; online 2015-01-15]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Healthy Nordic diet downregulates the expression of genes involved in inflammation in subcutaneous adipose tissue in individuals with features of the metabolic syndrome.
Kolehmainen M, Ulven SM, Paananen J, ..., Arner P, Dahlman I
Am. J. Clin. Nutr. 101 (1) 228-239 [2015-01-00; online 2014-12-21]
Bioinformatics and Expression Analysis (BEA)

Year 2014

PubMed DOI Crossref
Cesarean delivery and hematopoietic stem cell epigenetics in the newborn infant: implications for future health?
Almgren M, Schlinzig T, Gomez-Cabrero D, ..., Norman M, Ekström TJ
Am. J. Obstet. Gynecol. 211 (5) 502.e1-502.e8 [2014-11-00; online 2014-07-06]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Medium from γ-irradiated Escherichia coli bacteria stimulates a unique immune response in Drosophila cells.
Lindberg BG, Oldenvi S, Steiner H
Dev. Comp. Immunol. 46 (2) 392-400 [2014-10-00; online 2014-06-04]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Characterization of stem-like cells in mucoepidermoid tracheal paediatric tumor.
Lim ML, Ooi BN, Jungebluth P, ..., Ahrlund-Richter L, Macchiarini P
PLoS ONE 9 (9) e107712 [2014-09-17; online 2014-09-17]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
The DEK oncoprotein binds to highly and ubiquitously expressed genes with a dual role in their transcriptional regulation.
Sandén C, Järvstråt L, Lennartsson A, ..., Nilsson B, Gullberg U
Mol. Cancer 13 (-) 215 [2014-09-12; online 2014-09-12]
Bioinformatics and Expression Analysis (BEA) NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
The human carotid body releases acetylcholine, ATP and cytokines during hypoxia.
Kåhlin J, Mkrtchian S, Ebberyd A, ..., Fagerlund MJ, Eriksson LI
Exp. Physiol. 99 (8) 1089-1098 [2014-08-00; online 2014-06-03]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes.
Qu Y, Lennartsson A, Gaidzik VI, ..., Döhner K, Lehmann S
Epigenetics 9 (8) 1108-1119 [2014-08-00; online 2014-05-29]
Bioinformatics and Expression Analysis (BEA) NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Genome-wide profiling of AP-1-regulated transcription provides insights into the invasiveness of triple-negative breast cancer.
Zhao C, Qiao Y, Jonsson P, ..., Williams C, Dahlman-Wright K
Cancer Res. 74 (14) 3983-3994 [2014-07-15; online 2014-05-17]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
MiR-146a negatively regulates TLR2-induced inflammatory responses in keratinocytes.
Meisgen F, Xu Landén N, Wang A, ..., Breton L, Pivarcsi A
J. Invest. Dermatol. 134 (7) 1931-1940 [2014-07-00; online 2014-03-29]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Fish oil and krill oil supplementations differentially regulate lipid catabolic and synthetic pathways in mice.
Tillander V, Bjørndal B, Burri L, ..., Berge RK, Alexson SE
Nutr Metab (Lond) 11 (-) 20 [2014-04-27; online 2014-04-27]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
High-throughput transcription profiling identifies putative epigenetic regulators of hematopoiesis.
Prasad P, Rönnerblad M, Arner E, ..., Ekwall K, FANTOM consortium
Blood 123 (17) e46-e57 [2014-04-24; online 2014-03-29]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation.
Rönnerblad M, Andersson R, Olofsson T, ..., Lennartsson A, FANTOM consortium
Blood 123 (17) e79-e89 [2014-04-24; online 2014-03-29]
Bioinformatics and Expression Analysis (BEA) NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity.
Sadeghi L, Siggens L, Svensson JP, Ekwall K
Nat. Struct. Mol. Biol. 21 (3) 236-243 [2014-03-00; online 2014-02-18]
Bioinformatics and Expression Analysis (BEA)

Year 2013

PubMed DOI Crossref
Combining genetic mapping with genome-wide expression in experimental autoimmune encephalomyelitis highlights a gene network enriched for T cell functions and candidate genes regulating autoimmunity.
Thessen Hedreul M, Möller S, Stridh P, ..., Olsson T, Jagodic M
Hum. Mol. Genet. 22 (24) 4952-4966 [2013-12-15; online 2013-07-29]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
DNA damage leads to progressive replicative decline but extends the life span of long-lived mutant animals.
Lans H, Lindvall JM, Thijssen K, ..., Nilsen H, Vermeulen W
Cell Death Differ. 20 (12) 1709-1718 [2013-12-00; online 2013-09-10]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
The Oct1 homolog Nubbin is a repressor of NF-κB-dependent immune gene expression that increases the tolerance to gut microbiota.
Dantoft W, Davis MM, Lindvall JM, ..., Beskow A, Engström Y
BMC Biol. 11 (-) 99 [2013-09-06; online 2013-09-06]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites.
Yan J, Enge M, Whitington T, ..., Taipale M, Taipale J
Cell 154 (4) 801-813 [2013-08-15; online 2013-08-21]
Bioinformatics and Expression Analysis (BEA) Karolinska High Throughput Center (KHTC)
PubMed DOI Crossref
Chronic airway-induced allergy in mice modifies gene expression in the brain toward insulin resistance and inflammatory responses.
Sarlus H, Wang X, Cedazo-Minguez A, Schultzberg M, Oprica M
J Neuroinflammation 10 (-) 99 [2013-08-01; online 2013-08-01]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1.
Arczewska KD, Tomazella GG, Lindvall JM, ..., Thiede B, Nilsen H
Nucleic Acids Res. 41 (10) 5368-5381 [2013-05-01; online 2013-04-13]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
DNA topoisomerase III localizes to centromeres and affects centromeric CENP-A levels in fission yeast.
Norman-Axelsson U, Durand-Dubief M, Prasad P, Ekwall K
PLoS Genet. 9 (3) e1003371 [2013-03-14; online 2013-03-14]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Imatinib ameliorates neuroinflammation in a rat model of multiple sclerosis by enhancing blood-brain barrier integrity and by modulating the peripheral immune response.
Adzemovic MV, Adzemovic MZ, Zeitelhofer M, ..., Olsson T, Nilsson I
PLoS ONE 8 (2) e56586 [2013-02-20; online 2013-02-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Early-phase GVHD gene expression profile in target versus non-target tissues: kidney, a possible target?
Sadeghi B, Al-Chaqmaqchi H, Al-Hashmi S, ..., Moshfegh A, Hassan M
Bone Marrow Transplant. 48 (2) 284-293 [2013-02-00; online 2012-07-25]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Gene expression deregulation in postnatal skeletal muscle of TK2 deficient mice reveals a lower pool of proliferating myogenic progenitor cells.
Paredes JA, Zhou X, Höglund S, Karlsson A
PLoS ONE 8 (1) e53698 [2013-01-14; online 2013-01-14]
Bioinformatics and Expression Analysis (BEA)

Year 2012

PubMed DOI Crossref
Genome-wide and locus specific alterations in CDC73/HRPT2-mutated parathyroid tumors.
Sulaiman L, Haglund F, Hashemi J, ..., Larsson C, Juhlin CC
PLoS ONE 7 (9) e46325 [2012-09-28; online 2012-09-28]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
MicroRNA-125b down-regulates matrix metallopeptidase 13 and inhibits cutaneous squamous cell carcinoma cell proliferation, migration, and invasion.
Xu N, Zhang L, Meisgen F, ..., Sonkoly E, Pivarcsi A
J. Biol. Chem. 287 (35) 29899-29908 [2012-08-24; online 2012-07-12]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Expression analysis in multiple muscle groups and serum reveals complexity in the microRNA transcriptome of the mdx mouse with implications for therapy.
Roberts TC, Blomberg KE, McClorey G, ..., Smith CI, Wood MJ
Mol Ther Nucleic Acids 1 (-) e39 [2012-08-14; online 2012-08-14]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Reinius LE, Acevedo N, Joerink M, ..., Scheynius A, Kere J
PLoS ONE 7 (7) e41361 [2012-07-25; online 2012-07-25]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Effects of redox modulation by inhibition of thioredoxin reductase on radiosensitivity and gene expression.
Selenius M, Hedman M, Brodin D, ..., Björnstedt M, Fernandes AP
J. Cell. Mol. Med. 16 (7) 1593-1605 [2012-07-00; online 2011-10-19]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Prediction of ischemic events on the basis of transcriptomic and genomic profiling in patients undergoing carotid endarterectomy.
Folkersen L, Persson J, Ekstrand J, ..., Hedin U, Paulsson-Berne G
Mol. Med. 18 (-) 669-675 [2012-05-09; online 2012-03-01]
Bioinformatics and Expression Analysis (BEA) NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Differential evolutionary wiring of the tyrosine kinase Btk.
Nawaz HM, Kylsten P, Hamada N, ..., Smith CI, Lindvall JM
PLoS ONE 7 (5) e35640 [2012-05-04; online 2012-05-04]
Bioinformatics and Expression Analysis (BEA)

Year 2011

PubMed DOI Crossref
SWI/SNF regulates the alternative processing of a specific subset of pre-mRNAs in Drosophila melanogaster.
Waldholm J, Wang Z, Brodin D, ..., Farrants AK, Visa N
BMC Mol. Biol. 12 (-) 46 [2011-11-02; online 2011-11-02]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Histone modifications influence mediator interactions with chromatin.
Zhu X, Zhang Y, Bjornsdottir G, ..., Gustafsson CM, Myers LC
Nucleic Acids Res. 39 (19) 8342-8354 [2011-10-00; online 2011-07-12]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Early transcriptional regulation by C-peptide in freshly isolated rat proximal tubular cells.
Lindahl E, Nordquist L, Müller P, ..., Palm F, Jörnvall H
Diabetes Metab. Res. Rev. 27 (7) 697-704 [2011-10-00; online 2011-05-28]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport.
Phirke P, Efimenko E, Mohan S, ..., Leroux MR, Swoboda P
Dev. Biol. 357 (1) 235-247 [2011-09-01; online 2011-07-12]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genome wide association study identifies KCNMA1 contributing to human obesity.
Jiao H, Arner P, Hoffstedt J, ..., Clement K, Dahlman I
BMC Med Genomics 4 (-) 51 [2011-06-28; online 2011-06-28]
Bioinformatics and Expression Analysis (BEA) Mutation Analysis Facility (MAF) NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Specific syndecan-1 domains regulate mesenchymal tumor cell adhesion, motility and migration.
Zong F, Fthenou E, Mundt F, ..., Hjerpe A, Dobra K
PLoS ONE 6 (6) e14816 [2011-06-23; online 2011-06-23]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genetic association and gene expression analysis identify FGFR1 as a new susceptibility gene for human obesity.
Jiao H, Arner P, Dickson SL, ..., Clement K, Dahlman I
J. Clin. Endocrinol. Metab. 96 (6) E962-E966 [2011-06-00; online 2011-03-25]
Bioinformatics and Expression Analysis (BEA) Mutation Analysis Facility (MAF) NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Reactive astrocytes and Wnt/β-catenin signaling link nigrostriatal injury to repair in 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine model of Parkinson's disease.
L'Episcopo F, Tirolo C, Testa N, ..., Pluchino S, Marchetti B
Neurobiol. Dis. 41 (2) 508-527 [2011-02-00; online 2010-11-09]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Mechanisms of blast induced brain injuries, experimental studies in rats.
Risling M, Plantman S, Angeria M, ..., Arborelius U, Davidsson J
Neuroimage 54 Suppl 1 (-) S89-S97 [2011-01-00; online 2010-05-25]
Bioinformatics and Expression Analysis (BEA)

Year 2010

PubMed DOI Crossref
Gene expression profiling and chromatin immunoprecipitation identify DBN1, SETMAR and HIG2 as direct targets of SOX11 in mantle cell lymphoma.
Wang X, Björklund S, Wasik AM, ..., Christensson B, Sander B
PLoS ONE 5 (11) e14085 [2010-11-22; online 2010-11-22]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
A chromatin-remodeling protein is a component of fission yeast mediator.
Khorosjutina O, Wanrooij PH, Walfridsson J, ..., Ekwall K, Gustafsson CM
J. Biol. Chem. 285 (39) 29729-29737 [2010-09-24; online 2010-07-14]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
The role of IL-1beta in reduced IL-7 production by stromal and epithelial cells: a model for impaired T-cell numbers in the gut during HIV-1 infection.
Thang PH, Ruffin N, Brodin D, ..., Vivar N, Chiodi F
J. Intern. Med. 268 (2) 181-193 [2010-08-00; online 2010-05-26]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Topoisomerase I regulates open chromatin and controls gene expression in vivo.
Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K
EMBO J. 29 (13) 2126-2134 [2010-07-07; online 2010-06-08]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Tissue factor pathway inhibitor-2 is induced by fluid shear stress in vascular smooth muscle cells and affects cell proliferation and survival.
Ekstrand J, Razuvaev A, Folkersen L, Roy J, Hedin U
J. Vasc. Surg. 52 (1) 167-175 [2010-07-00; online 2010-06-12]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Gene expression analysis in hypoplastic lungs in the nitrofen model of congenital diaphragmatic hernia.
Burgos CM, Uggla AR, Fagerström-Billai F, ..., Frenckner B, Nord M
J. Pediatr. Surg. 45 (7) 1445-1454 [2010-07-00; online 2010-07-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genetic evidence of multiple loci in dystocia--difficult labour.
Algovik M, Kivinen K, Peterson H, Westgren M, Kere J
BMC Med. Genet. 11 (-) 105 [2010-06-30; online 2010-06-30]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genome-wide mapping of estrogen receptor-beta-binding regions reveals extensive cross-talk with transcription factor activator protein-1.
Zhao C, Gao H, Liu Y, ..., Gustafsson JA, Dahlman-Wright K
Cancer Res. 70 (12) 5174-5183 [2010-06-15; online 2010-05-27]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Analysis of oestrogen regulation of alpha-, beta- and gamma-secretase gene and protein expression in cultured human neuronal and glial cells.
Nord LC, Sundqvist J, Andersson E, Fried G
Neurodegener Dis 7 (6) 349-364 [2010-06-04; online 2010-06-04]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Molecular make-up of the glomerular filtration barrier.
Patrakka J, Tryggvason K
Biochem. Biophys. Res. Commun. 396 (1) 164-169 [2010-05-21; online 2010-05-25]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Adipose tissue pathways involved in weight loss of cancer cachexia.
Dahlman I, Mejhert N, Linder K, ..., Rydén M, Arner P
Br. J. Cancer 102 (10) 1541-1548 [2010-05-11; online 2010-04-22]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Chd1 remodelers maintain open chromatin and regulate the epigenetics of differentiation.
Persson J, Ekwall K
Exp. Cell Res. 316 (8) 1316-1323 [2010-05-01; online 2010-03-10]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
The impact of RNA standardization and heterogeneous gene expression on the results of cDNA array of human breast carcinoma.
Khoshnoud R, He Q, Sylván M, ..., Rutqvist L, Skog S
Int. J. Mol. Med. 25 (5) 735-741 [2010-05-00; online 2010-04-08]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Mapping of the fibroblast growth factors in human white adipose tissue.
Mejhert N, Galitzky J, Pettersson AT, ..., Arner P, Rydén M
J. Clin. Endocrinol. Metab. 95 (5) 2451-2457 [2010-05-00; online 2010-03-17]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia.
Deneberg S, Grövdal M, Karimi M, ..., Hellström-Lindberg E, Lehmann S
Leukemia 24 (5) 932-941 [2010-05-00; online 2010-03-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
ELMOD2, a candidate gene for idiopathic pulmonary fibrosis, regulates antiviral responses.
Pulkkinen V, Bruce S, Rintahaka J, ..., Matikainen S, Kere J
FASEB J. 24 (4) 1167-1177 [2010-04-00; online 2009-12-08]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genome-wide characterisation of the Gcn5 histone acetyltransferase in budding yeast during stress adaptation reveals evolutionarily conserved and diverged roles.
Xue-Franzén Y, Johnsson A, Brodin D, ..., Bürglin TR, Wright AP
BMC Genomics 11 (-) 200 [2010-03-25; online 2010-03-25]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Sustained inflammation due to nuclear factor-kappa B activation in irradiated human arteries.
Halle M, Gabrielsen A, Paulsson-Berne G, ..., Farnebo F, Tornvall P
J. Am. Coll. Cardiol. 55 (12) 1227-1236 [2010-03-23; online 2010-03-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.
Lantermann AB, Straub T, Strålfors A, ..., Ekwall K, Korber P
Nat. Struct. Mol. Biol. 17 (2) 251-257 [2010-02-00; online 2010-01-31]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Global gene expression analysis of rodent motor neurons following spinal cord injury associates molecular mechanisms with development of postinjury spasticity.
Wienecke J, Westerdahl AC, Hultborn H, Kiehn O, Ryge J
J. Neurophysiol. 103 (2) 761-778 [2010-02-00; online 2009-11-27]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Connective tissue growth factor is expressed in malignant cells of Hodgkin lymphoma but not in other mature B-cell lymphomas.
Birgersdotter A, Baumforth KR, Wei W, ..., Porwit A, Ernberg I
Am. J. Clin. Pathol. 133 (2) 271-280 [2010-02-00; online 2010-01-23]
Bioinformatics and Expression Analysis (BEA)
SciLifeLab Data Centre
Publications 9.5.1