Commun Biol

ISSN	2399-3642
ISSN-L	2399-3642
IUID	3a74b4f537704c08a71f6896186d3b93
Modified	2020-11-27T13:14:10.166Z
Created	2019-12-02T17:20:27.175Z

Range-wide and temporal genomic analyses reveal the consequences of near-extinction in Swedish moose.

Dussex N, Kurland S, Olsen RA, ..., Dalén L, Laikre L

Commun Biol 6 (1) 1035 [2023-10-17; online 2023-10-17]

Bioinformatics Compute and Storage [Service] NGI Other [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

O304 ameliorates hyperglycemia in mice by dually promoting muscle glucose effectiveness and preserving β-cell function.

Norlin S, Axelsson J, Ericsson M, Edlund H

Commun Biol 6 (1) 877 [2023-08-25; online 2023-08-25]

Bioinformatics Compute and Storage [Service]

PubMed DOI Crossref

Bacterial bioindicators enable biological status classification along the continental Danube river.

Fontaine L, Pin L, Savio D, ..., Farnleitner AH, Eiler A

Commun Biol 6 (1) 862 [2023-08-18; online 2023-08-18]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe.

Mattila TM, Svensson EM, Juras A, ..., Malmström H, Jakobsson M

Commun Biol 6 (1) 793 [2023-08-09; online 2023-08-09]

Bioinformatics Compute and Storage [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Alternating L4 loop architecture of the bacterial polysaccharide co-polymerase WzzE.

Wiseman B, Widmalm G, Högbom M

Commun Biol 6 (1) 802 [2023-08-02; online 2023-08-02]

Cryo-EM [Service]

PubMed DOI Crossref

Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Rifkin RF, Vikram S, Alcorta J, ..., Schlebusch CM, Lombard M

Commun Biol 6 (1) 240 [2023-03-03; online 2023-03-03]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Proteogenomics decodes the evolution of human ipsilateral breast cancer.

De Marchi T, Pyl PT, Sjöström M, ..., Malmstöm J, Niméus E

Commun Biol 6 (1) 139 [2023-02-02; online 2023-02-02]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice.

Hases L, Stepanauskaite L, Birgersson M, ..., Engstrand L, Williams C

Commun Biol 6 (1) 20 [2023-01-09; online 2023-01-09]

Bioinformatics Compute and Storage [Service]

PubMed DOI Crossref

Metabolic reprogramming and membrane glycan remodeling as potential drivers of zebrafish heart regeneration.

Spelat R, Ferro F, Contessotto P, ..., Kilcoyne M, Pandit A

Commun Biol 5 (1) 1365 [2022-12-13; online 2022-12-13]

In Situ Sequencing (ISS) [Service]

PubMed DOI Crossref

Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis.

Tengvall K, Sundström E, Wang C, ..., Andersson G, Lindblad-Toh K

Commun Biol 5 (1) 1348 [2022-12-08; online 2022-12-08]

Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Single-cell sequencing deconvolutes cellular responses to exercise in human skeletal muscle.

Lovrić A, Rassolie A, Alam S, ..., Gustafsson T, Rullman E

Commun Biol 5 (1) 1121 [2022-10-22; online 2022-10-22]

Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A 14,000-year-old genome sheds light on the evolution and extinction of a Pleistocene vulture.

Ericson PGP, Irestedt M, Zuccon D, ..., Werdelin L, Qu Y

Commun Biol 5 (1) 857 [2022-08-23; online 2022-08-23]

Bioinformatics Compute and Storage [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Differential and shared genetic effects on kidney function between diabetic and non-diabetic individuals.

Winkler TW, Rasheed H, Teumer A, ..., Pattaro C, Heid IM

Commun Biol 5 (1) 580 [2022-06-13; online 2022-06-13]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Bioarchaeological evidence of one of the earliest Islamic burials in the Levant.

Srigyan M, Bolívar H, Ureña I, ..., Günther T, Valdiosera C

Commun Biol 5 (1) 554 [2022-06-07; online 2022-06-07]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Speciation and population divergence in a mutualistic seed dispersing bird.

de Raad J, Päckert M, Irestedt M, ..., Neuschulz EL, Nilsson MA

Commun Biol 5 (1) 429 [2022-05-09; online 2022-05-09]

Bioinformatics Compute and Storage [Service]

PubMed DOI Crossref

Silencing of STE20-type kinase STK25 in human aortic endothelial and smooth muscle cells is atheroprotective.

Cansby E, Kumari S, Caputo M, ..., Goncalves I, Mahlapuu M

Commun Biol 5 (1) 379 [2022-04-19; online 2022-04-19]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Glycoproteomics [Service] Systems Biology [Collaborative]

PubMed DOI Crossref

Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals.

Svensson Akusjärvi S, Krishnan S, Jütte BB, ..., Sönnerborg A, Neogi U

Commun Biol 5 (1) 357 [2022-04-13; online 2022-04-13]

Affinity Proteomics Uppsala [Service]

PubMed DOI Crossref

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium.

Vickovic S, Schapiro D, Carlberg K, ..., Regev A, Ståhl PL

Commun Biol 5 (1) 129 [2022-02-11; online 2022-02-11]

NGI Short read [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection.

Mikaeloff F, Svensson Akusjärvi S, Ikomey GM, ..., Benfeitas R, Neogi U

Commun Biol 5 (1) 27 [2022-01-11; online 2022-01-11]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities.

Westmeijer G, Mehrshad M, Turner S, ..., Bertilsson S, Dopson M

Commun Biol 5 (1) 37 [2022-01-11; online 2022-01-11]

Bioinformatics Compute and Storage [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest.

Powell D, Groβe-Wilde E, Krokene P, ..., Andersson MN, Schlyter F

Commun Biol 4 (1) 1059 [2021-09-09; online 2021-09-09]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive in situ mapping of human cortical transcriptomic cell types.

Langseth CM, Gyllborg D, Miller JA, ..., Hilscher MM, Nilsson M

Commun Biol 4 (1) 998 [2021-08-24; online 2021-08-24]

In Situ Sequencing (ISS) [Technology development]

PubMed DOI Crossref

Complex population structure of the Atlantic puffin revealed by whole genome analyses.

Kersten O, Star B, Leigh DM, ..., Jakobsen KS, Boessenkool S

Commun Biol 4 (1) 922 [2021-07-29; online 2021-07-29]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring.

Chen J, Bi H, Pettersson ME, ..., Scheerer P, Andersson L

Commun Biol 4 (1) 795 [2021-06-25; online 2021-06-25]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The γ-tubulin meshwork assists in the recruitment of PCNA to chromatin in mammalian cells.

Corvaisier M, Zhou J, Malycheva D, ..., Lindström L, Alvarado-Kristensson M

Commun Biol 4 (1) 767 [2021-06-22; online 2021-06-22]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A combined approach for single-cell mRNA and intracellular protein expression analysis.

Reimegård J, Tarbier M, Danielsson M, ..., Friedländer MR, Gallant CJ

Commun Biol 4 (1) 624 [2021-05-25; online 2021-05-25]

Affinity Proteomics Uppsala [Technology development] Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Neutron reflectometry and NMR spectroscopy of full-length Bcl-2 protein reveal its membrane localization and conformation.

Mushtaq AU, Ådén J, Clifton LA, ..., Sparrman T, Gröbner G

Commun Biol 4 (1) 507 [2021-04-27; online 2021-04-27]

Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles.

Holmfeldt K, Nilsson E, Simone D, ..., Bertilsson S, Dopson M

Commun Biol 4 (1) 307 [2021-03-08; online 2021-03-08]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

PubMed DOI Crossref

Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.

Flatt JW, Domanska A, Seppälä AL, Butcher SJ

Commun Biol 4 (1) 250 [2021-02-26; online 2021-02-26]

Cryo-EM [Service]

PubMed DOI Crossref

A novel canine reference genome resolves genomic architecture and uncovers transcript complexity.

Wang C, Wallerman O, Arendt ML, ..., Meadows JRS, Lindblad-Toh K

Commun Biol 4 (1) 185 [2021-02-10; online 2021-02-10]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide.

Heidler TV, Ernits K, Ziolkowska A, Claesson R, Persson K

Commun Biol 4 (1) 106 [2021-01-25; online 2021-01-25]

Cryo-EM [Collaborative]

PubMed DOI Crossref

LRIG proteins regulate lipid metabolism via BMP signaling and affect the risk of type 2 diabetes.

Herdenberg C, Mutie PM, Billing O, ..., Franks PW, Hedman H

Commun Biol 4 (1) 90 [2021-01-19; online 2021-01-19]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

UvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain.

Kawale AA, Burmann BM

Commun Biol 3 (1) 607 [2020-10-23; online 2020-10-23]

Swedish NMR Centre (SNC) [Service]

PubMed DOI Crossref

Genome sequence of segmented filamentous bacteria present in the human intestine.

Jonsson H, Hugerth LW, Sundh J, Lundin E, Andersson AF

Commun Biol 3 (1) 485 [2020-09-04; online 2020-09-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Multiplex profiling of serum proteins in solution using barcoded antibody fragments and next generation sequencing.

Brofelth M, Ekstrand AI, Gour S, ..., Axelsson U, Borrebaeck CAK

Commun Biol 3 (1) 339 [2020-07-03; online 2020-07-03]

Clinical Genomics Lund

PubMed DOI Crossref

Spatio-molecular domains identified in the mouse subthalamic nucleus and neighboring glutamatergic and GABAergic brain structures.

Wallén-Mackenzie Å, Dumas S, Papathanou M, ..., König N, Björklund ÅK

Commun Biol 3 (1) 338 [2020-07-03; online 2020-07-03]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG) [Service]

PubMed DOI Crossref

Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes.

Alneberg J, Bennke C, Beier S, ..., Pinhassi J, Andersson AF

Commun Biol 3 (1) 119 [2020-03-13; online 2020-03-13]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Uncovering diversity and metabolic spectrum of animals in dead zone sediments.

Broman E, Bonaglia S, Holovachov O, ..., Hall POJ, Nascimento FJA

Commun Biol 3 (1) 106 [2020-03-06; online 2020-03-06]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Biomolecular analyses reveal the age, sex and species identity of a near-intact Pleistocene bird carcass.

Dussex N, Stanton DWG, Sigeman H, ..., Hansson B, Dalén L

Commun Biol 3 (1) 84 [2020-02-21; online 2020-02-21]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Above-below surface interactions mediate effects of seagrass disturbance on meiobenthic diversity, nematode and polychaete trophic structure.

Nascimento FJA, Dahl M, Deyanova D, ..., Creer S, Gullström M

Commun Biol 2 (-) 362 [2019-10-04; online 2019-10-04]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Ancient DNA from mastics solidifies connection between material culture and genetics of mesolithic hunter-gatherers in Scandinavia.

Kashuba N, Kırdök E, Damlien H, ..., Persson P, Götherström A

Commun Biol 2 (-) 185 [2019-05-15; online 2019-05-15]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Wnt5a is a TLR2/4-ligand that induces tolerance in human myeloid cells.

Mehmeti M, Bergenfelz C, Källberg E, ..., André I, Leandersson K

Commun Biol 2 (1) 176 [2019-05-09; online 2019-05-09]

Structural Proteomics [Service]

PubMed DOI Crossref

RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.

Wu C, Simonetti M, Rossell C, ..., Crosetto N, Nilsson M

Commun Biol 1 (-) 209 [2018-11-28; online 2018-11-28]

Advanced FISH Technologies [Technology development] In Situ Sequencing (ISS) [Technology development]

PubMed DOI Crossref

The GTPase domain of gamma-tubulin is required for normal mitochondrial function and spatial organization.

Lindström L, Li T, Malycheva D, ..., Rosselló CA, Alvarado-Kristensson M

Commun Biol 1 (1) 37 [2018-05-03; online 2018-05-03]

Integrated Microscopy Technologies Gothenburg [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

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