Commun Biol

ISSN	2399-3642
ISSN-L	2399-3642
IUID	3a74b4f537704c08a71f6896186d3b93
Modified	2020-11-27T13:14:10.166Z
Created	2019-12-02T17:20:27.175Z

Year 2024

PubMed DOI Crossref

Spatial profiling of the mouse colonic immune landscape associated with colitis and sex.

Holm M, Stepanauskaitė L, Bäckström A, ..., Stadler C, Williams C

Commun Biol 7 (1) 1595 [2024-11-29; online 2024-11-29] Open Access

Affinity Proteomics Stockholm [Service] Spatial Proteomics [Collaborative]

PubMed DOI Crossref

Three-dimensional localization and tracking of chromosomal loci throughout the Escherichia coli cell cycle.

Karempudi P, Gras K, Amselem E, ..., Schirman D, Elf J

Commun Biol 7 (1) 1443 [2024-11-05; online 2024-11-05]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Candidatus Desulforudis audaxviator dominates a 975 m deep groundwater community in central Sweden.

Westmeijer G, van Dam F, Kietäväinen R, ..., Drake H, Dopson M

Commun Biol 7 (1) 1332 [2024-10-15; online 2024-10-15]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Ichthyosporea: a window into the origin of animals.

Shabardina V, Dharamshi JE, Ara PS, ..., Casacuberta E, Ruiz-Trillo I

Commun Biol 7 (1) 915 [2024-07-29; online 2024-07-29]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Normoglycemia and physiological cortisone level maintain glucose homeostasis in a pancreas-liver microphysiological system.

Rigal S, Casas B, Kanebratt KP, ..., Andersson TB, Vilén LK

Commun Biol 7 (1) 877 [2024-07-18; online 2024-07-18]

Glycoproteomics and MS Proteomics [Service]

PubMed DOI Crossref

Insights into mechanisms of MALT1 allostery from NMR and AlphaFold dynamic analyses.

Wallerstein J, Han X, Levkovets M, ..., Agback T, Orekhov V

Commun Biol 7 (1) 868 [2024-07-16; online 2024-07-16]

Bioinformatics (NBIS) [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] Swedish NMR Centre (SNC) [Technology development]

PubMed DOI Crossref

Mammalian cell display with automated oligo design and library assembly allows for rapid residue level conformational epitope mapping.

Thalén NB, Karlander M, Lundqvist M, ..., Ohlin M, Rockberg J

Commun Biol 7 (1) 805 [2024-07-03; online 2024-07-03]

Drug Discovery and Development (DDD) [Service]

DOI Crossref

Membrane topography and the overestimation of protein clustering in single molecule localisation microscopy – identification and correction

Adler J, Bernhem K, Parmryd I

Commun Biol 7 (1) - [2024-06-29; online 2024-06-29]

Integrated Microscopy Technologies Stockholm [Service]

PubMed DOI Crossref

MDM2 amplification in rod-shaped chromosomes provides clues to early stages of circularized gene amplification in liposarcoma.

Sydow S, Piccinelli P, Mitra S, ..., Spierings D, Mertens F

Commun Biol 7 (1) 606 [2024-05-20; online 2024-05-20]

Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Exploring TRF2-Dependent DNA Distortion Through Single-DNA Manipulation Studies.

Zhao X, Vogirala VK, Liu M, ..., Sandin S, Yan J

Commun Biol 7 (1) 148 [2024-02-03; online 2024-02-03]

Cryo-EM [Collaborative]

Year 2023

PubMed DOI Crossref

Combined NMR and molecular dynamics conformational filter identifies unambiguously dynamic ensembles of Dengue protease NS2B/NS3pro.

Agback T, Lesovoy D, Han X, ..., Achour A, Agback P

Commun Biol 6 (1) 1193 [2023-11-24; online 2023-11-24]

Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

Range-wide and temporal genomic analyses reveal the consequences of near-extinction in Swedish moose.

Dussex N, Kurland S, Olsen RA, ..., Dalén L, Laikre L

Commun Biol 6 (1) 1035 [2023-10-17; online 2023-10-17]

Bioinformatics Support for Computational Resources [Service] NGI Other [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

O304 ameliorates hyperglycemia in mice by dually promoting muscle glucose effectiveness and preserving β-cell function.

Norlin S, Axelsson J, Ericsson M, Edlund H

Commun Biol 6 (1) 877 [2023-08-25; online 2023-08-25]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Bacterial bioindicators enable biological status classification along the continental Danube river.

Fontaine L, Pin L, Savio D, ..., Farnleitner AH, Eiler A

Commun Biol 6 (1) 862 [2023-08-18; online 2023-08-18]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe.

Mattila TM, Svensson EM, Juras A, ..., Malmström H, Jakobsson M

Commun Biol 6 (1) 793 [2023-08-09; online 2023-08-09]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Alternating L4 loop architecture of the bacterial polysaccharide co-polymerase WzzE.

Wiseman B, Widmalm G, Högbom M

Commun Biol 6 (1) 802 [2023-08-02; online 2023-08-02]

Cryo-EM [Service]

PubMed DOI Crossref

Bone mineral density loci specific to the skull portray potential pleiotropic effects on craniosynostosis.

Medina-Gomez C, Mullin BH, Chesi A, ..., Kague E, Rivadeneira F

Commun Biol 6 (1) 691 [2023-07-04; online 2023-07-04]

Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Rifkin RF, Vikram S, Alcorta J, ..., Schlebusch CM, Lombard M

Commun Biol 6 (1) 240 [2023-03-03; online 2023-03-03]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Proteogenomics decodes the evolution of human ipsilateral breast cancer.

De Marchi T, Pyl PT, Sjöström M, ..., Malmstöm J, Niméus E

Commun Biol 6 (1) 139 [2023-02-02; online 2023-02-02]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice.

Hases L, Stepanauskaite L, Birgersson M, ..., Engstrand L, Williams C

Commun Biol 6 (1) 20 [2023-01-09; online 2023-01-09]

Bioinformatics Support for Computational Resources [Service]

Year 2022

PubMed DOI Crossref

Metabolic reprogramming and membrane glycan remodeling as potential drivers of zebrafish heart regeneration.

Spelat R, Ferro F, Contessotto P, ..., Kilcoyne M, Pandit A

Commun Biol 5 (1) 1365 [2022-12-13; online 2022-12-13]

In Situ Sequencing (ISS) [Service]

PubMed DOI Crossref

Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis.

Tengvall K, Sundström E, Wang C, ..., Andersson G, Lindblad-Toh K

Commun Biol 5 (1) 1348 [2022-12-08; online 2022-12-08]

Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Single-cell sequencing deconvolutes cellular responses to exercise in human skeletal muscle.

Lovrić A, Rassolie A, Alam S, ..., Gustafsson T, Rullman E

Commun Biol 5 (1) 1121 [2022-10-22; online 2022-10-22]

Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A 14,000-year-old genome sheds light on the evolution and extinction of a Pleistocene vulture.

Ericson PGP, Irestedt M, Zuccon D, ..., Werdelin L, Qu Y

Commun Biol 5 (1) 857 [2022-08-23; online 2022-08-23]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Differential and shared genetic effects on kidney function between diabetic and non-diabetic individuals.

Winkler TW, Rasheed H, Teumer A, ..., Pattaro C, Heid IM

Commun Biol 5 (1) 580 [2022-06-13; online 2022-06-13]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Bioarchaeological evidence of one of the earliest Islamic burials in the Levant.

Srigyan M, Bolívar H, Ureña I, ..., Günther T, Valdiosera C

Commun Biol 5 (1) 554 [2022-06-07; online 2022-06-07]

Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Speciation and population divergence in a mutualistic seed dispersing bird.

de Raad J, Päckert M, Irestedt M, ..., Neuschulz EL, Nilsson MA

Commun Biol 5 (1) 429 [2022-05-09; online 2022-05-09]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Silencing of STE20-type kinase STK25 in human aortic endothelial and smooth muscle cells is atheroprotective.

Cansby E, Kumari S, Caputo M, ..., Goncalves I, Mahlapuu M

Commun Biol 5 (1) 379 [2022-04-19; online 2022-04-19]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Glycoproteomics and MS Proteomics [Service] Systems Biology [Collaborative]

PubMed DOI Crossref

Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals.

Svensson Akusjärvi S, Krishnan S, Jütte BB, ..., Sönnerborg A, Neogi U

Commun Biol 5 (1) 357 [2022-04-13; online 2022-04-13]

Affinity Proteomics Uppsala [Service]

PubMed DOI Crossref

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium.

Vickovic S, Schapiro D, Carlberg K, ..., Regev A, Ståhl PL

Commun Biol 5 (1) 129 [2022-02-11; online 2022-02-11]

NGI Short read [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection.

Mikaeloff F, Svensson Akusjärvi S, Ikomey GM, ..., Benfeitas R, Neogi U

Commun Biol 5 (1) 27 [2022-01-11; online 2022-01-11]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities.

Westmeijer G, Mehrshad M, Turner S, ..., Bertilsson S, Dopson M

Commun Biol 5 (1) 37 [2022-01-11; online 2022-01-11]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2021

PubMed DOI Crossref

A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest.

Powell D, Groβe-Wilde E, Krokene P, ..., Andersson MN, Schlyter F

Commun Biol 4 (1) 1059 [2021-09-09; online 2021-09-09]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive in situ mapping of human cortical transcriptomic cell types.

Langseth CM, Gyllborg D, Miller JA, ..., Hilscher MM, Nilsson M

Commun Biol 4 (1) 998 [2021-08-24; online 2021-08-24]

In Situ Sequencing (ISS) [Technology development]

PubMed DOI Crossref

Complex population structure of the Atlantic puffin revealed by whole genome analyses.

Kersten O, Star B, Leigh DM, ..., Jakobsen KS, Boessenkool S

Commun Biol 4 (1) 922 [2021-07-29; online 2021-07-29]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring.

Chen J, Bi H, Pettersson ME, ..., Scheerer P, Andersson L

Commun Biol 4 (1) 795 [2021-06-25; online 2021-06-25]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The γ-tubulin meshwork assists in the recruitment of PCNA to chromatin in mammalian cells.

Corvaisier M, Zhou J, Malycheva D, ..., Lindström L, Alvarado-Kristensson M

Commun Biol 4 (1) 767 [2021-06-22; online 2021-06-22]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A combined approach for single-cell mRNA and intracellular protein expression analysis.

Reimegård J, Tarbier M, Danielsson M, ..., Friedländer MR, Gallant CJ

Commun Biol 4 (1) 624 [2021-05-25; online 2021-05-25]

Affinity Proteomics Uppsala [Technology development] Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Neutron reflectometry and NMR spectroscopy of full-length Bcl-2 protein reveal its membrane localization and conformation.

Mushtaq AU, Ådén J, Clifton LA, ..., Sparrman T, Gröbner G

Commun Biol 4 (1) 507 [2021-04-27; online 2021-04-27]

Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles.

Holmfeldt K, Nilsson E, Simone D, ..., Bertilsson S, Dopson M

Commun Biol 4 (1) 307 [2021-03-08; online 2021-03-08]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

PubMed DOI Crossref

Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.

Flatt JW, Domanska A, Seppälä AL, Butcher SJ

Commun Biol 4 (1) 250 [2021-02-26; online 2021-02-26]

Cryo-EM [Service]

PubMed DOI Crossref

A novel canine reference genome resolves genomic architecture and uncovers transcript complexity.

Wang C, Wallerman O, Arendt ML, ..., Meadows JRS, Lindblad-Toh K

Commun Biol 4 (1) 185 [2021-02-10; online 2021-02-10]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide.

Heidler TV, Ernits K, Ziolkowska A, Claesson R, Persson K

Commun Biol 4 (1) 106 [2021-01-25; online 2021-01-25]

Cryo-EM [Collaborative]

PubMed DOI Crossref

LRIG proteins regulate lipid metabolism via BMP signaling and affect the risk of type 2 diabetes.

Herdenberg C, Mutie PM, Billing O, ..., Franks PW, Hedman H

Commun Biol 4 (1) 90 [2021-01-19; online 2021-01-19]

Swedish Metabolomics Centre (SMC) [Service]

Year 2020

PubMed DOI Crossref

UvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain.

Kawale AA, Burmann BM

Commun Biol 3 (1) 607 [2020-10-23; online 2020-10-23]

Swedish NMR Centre (SNC) [Service]

PubMed DOI Crossref

Genome sequence of segmented filamentous bacteria present in the human intestine.

Jonsson H, Hugerth LW, Sundh J, Lundin E, Andersson AF

Commun Biol 3 (1) 485 [2020-09-04; online 2020-09-04]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Multiplex profiling of serum proteins in solution using barcoded antibody fragments and next generation sequencing.

Brofelth M, Ekstrand AI, Gour S, ..., Axelsson U, Borrebaeck CAK

Commun Biol 3 (1) 339 [2020-07-03; online 2020-07-03]

Clinical Genomics Clinical Genomics Lund

PubMed DOI Crossref

Spatio-molecular domains identified in the mouse subthalamic nucleus and neighboring glutamatergic and GABAergic brain structures.

Wallén-Mackenzie Å, Dumas S, Papathanou M, ..., König N, Björklund ÅK

Commun Biol 3 (1) 338 [2020-07-03; online 2020-07-03]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG) [Service]

PubMed DOI Crossref

Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes.

Alneberg J, Bennke C, Beier S, ..., Pinhassi J, Andersson AF

Commun Biol 3 (1) 119 [2020-03-13; online 2020-03-13]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Uncovering diversity and metabolic spectrum of animals in dead zone sediments.

Broman E, Bonaglia S, Holovachov O, ..., Hall POJ, Nascimento FJA

Commun Biol 3 (1) 106 [2020-03-06; online 2020-03-06]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Biomolecular analyses reveal the age, sex and species identity of a near-intact Pleistocene bird carcass.

Dussex N, Stanton DWG, Sigeman H, ..., Hansson B, Dalén L

Commun Biol 3 (1) 84 [2020-02-21; online 2020-02-21]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2019

PubMed DOI Crossref

Above-below surface interactions mediate effects of seagrass disturbance on meiobenthic diversity, nematode and polychaete trophic structure.

Nascimento FJA, Dahl M, Deyanova D, ..., Creer S, Gullström M

Commun Biol 2 (-) 362 [2019-10-04; online 2019-10-04]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Ancient DNA from mastics solidifies connection between material culture and genetics of mesolithic hunter-gatherers in Scandinavia.

Kashuba N, Kırdök E, Damlien H, ..., Persson P, Götherström A

Commun Biol 2 (-) 185 [2019-05-15; online 2019-05-15]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Wnt5a is a TLR2/4-ligand that induces tolerance in human myeloid cells.

Mehmeti M, Bergenfelz C, Källberg E, ..., André I, Leandersson K

Commun Biol 2 (1) 176 [2019-05-09; online 2019-05-09]

Structural Proteomics [Service]

Year 2018

PubMed DOI Crossref

RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.

Wu C, Simonetti M, Rossell C, ..., Crosetto N, Nilsson M

Commun Biol 1 (-) 209 [2018-11-28; online 2018-11-28]

Advanced FISH Technologies [Technology development] In Situ Sequencing (ISS) [Technology development]

PubMed DOI Crossref

The GTPase domain of gamma-tubulin is required for normal mitochondrial function and spatial organization.

Lindström L, Li T, Malycheva D, ..., Rosselló CA, Alvarado-Kristensson M

Commun Biol 1 (1) 37 [2018-05-03; online 2018-05-03]

Integrated Microscopy Technologies Gothenburg [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]