Publications 2022

Title Authors Journal Published Online
Weakened resilience of benthic microbial communities in the face of climate change Seidel L, Ketzer M, Broman E, ..., Hylander S, Dopson M ISME COMMUN. 2 (1) - 2022-12-00 2022-03-08
GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species Kutschera VE, Kierczak M, van der Valk T, ..., Dalén L, Díez-del-Molino D BMC Bioinformatics 23 (1) - 2022-12-00 2022-06-13
Differential and shared genetic effects on kidney function between diabetic and non-diabetic individuals Winkler TW, Rasheed H, Teumer A, ..., None , None Commun Biol 5 (1) - 2022-12-00 2022-06-13
Chloride binding in Portland composite cements containing metakaolin and silica fume Babaahmadi A, Machner A, Kunther W, ..., Hemstad P, De Weerdt K Cement and Concrete Research 161 (-) 106924 2022-11-00 2022-11-00
Congenital tremor and splay leg in piglets - insights into the virome, local cytokine response, and histology. Stenberg H, Hellman S, Lindström L, ..., Hayer J, Malmberg M BMC Vet Res 18 (1) 348 2022-09-16 2022-09-16
Genome-wide association study of liver enzyme elevation in an extended cohort of rheumatoid arthritis patients starting low-dose methotrexate. Cavalli M, Eriksson N, Sundbaum JK, ..., Hallberg P, Wadelius M Pharmacogenomics - (-) - 2022-09-07 2022-09-07
New regulators of the tetracycline-inducible gene expression system identified by chemical and genetic screens. Colicchia V, Häggblad M, Sirozh O, ..., Hühn D, Fernandez-Capetillo O FEBS Open Bio - (-) - 2022-09-05 2022-09-05
Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. Gutiérrez-Valencia J, Fracassetti M, Berdan EL, ..., Arroyo J, Slotte T Curr. Biol. - (-) - 2022-09-04 2022-09-04
Three Adult Cases of STAT1 Gain-of-Function with Chronic Mucocutaneous Candidiasis Treated with JAK Inhibitors. Borgström EW, Edvinsson M, Pérez LP, ..., Brodin P, Bergman P J Clin Immunol - (-) - 2022-09-02 2022-09-02
Valorization of hydrolysis lignin from a spruce-based biorefinery by applying γ-valerolactone treatment. Momayez F, Hedenström M, Stagge S, Jönsson LJ, Martín C Bioresour. Technol. 359 (-) 127466 2022-09-00 2022-06-13
Impact of temperature and residence time on the hydrothermal carbonization of organosolv lignin Latham KG, Matsakas L, Figueira J, ..., Christakopoulos P, Jansson S Journal of Analytical and Applied Pyrolysis 166 (-) 105623 2022-09-00 2022-09-00
Enhanced cytotoxicity of a novel family of ATPase inhibitors in colorectal cancer cells with high NAT2 activity. Zhang X, Akcan E, Correia M, ..., Globisch D, Sjöblom T Biochem. Pharmacol. 203 (-) 115184 2022-09-00 2022-07-22
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties. Ragaller F, Andronico L, Sykora J, ..., Vattulainen I, Sezgin E Open Biol 12 (9) 220175 2022-09-00 2022-09-14
PRC2-mediated repression is essential to maintain identity and function of differentiated dopaminergic and serotonergic neurons. Toskas K, Yaghmaeian-Salmani B, Skiteva O, ..., Perlmann T, Holmberg J Sci Adv 8 (34) eabo1543 2022-08-26 2022-08-26
Electroactive Covalent Organic Framework Enabling Photostimulus-Responsive Devices. Yang Y, Sandra AP, Idström A, ..., Evenäs L, Börjesson K J. Am. Chem. Soc. - (-) - 2022-08-25 2022-08-25
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity. Ambikan AT, Yang H, Krishnan S, ..., Benfeitas R, Neogi U Cell Syst 13 (8) 665-681.e4 2022-08-17 2022-07-08
Microbial functional genes are driven by gradients in sediment stoichiometry, oxygen, and salinity across the Baltic benthic ecosystem. Broman E, Izabel-Shen D, Rodríguez-Gijón A, ..., Garcia SL, Nascimento FJA Microbiome 10 (1) 126 2022-08-15 2022-08-15
Dynamical Systems Model of RNA Velocity Improves Inference of Single-cell Trajectory, Pseudo-time and Gene Regulation. Liu R, Pisco AO, Braun E, Linnarsson S, Zou J J. Mol. Biol. 434 (15) 167606 2022-08-15 2022-04-27
A method for Boolean analysis of protein interactions at a molecular level. Raykova D, Kermpatsou D, Malmqvist T, ..., Kampf C, Söderberg O Nat Commun 13 (1) 4755 2022-08-13 2022-08-13
Staphylococcal self-loading helicases couple the staircase mechanism with inter domain high flexibility. Qiao C, Debiasi-Anders G, Mir-Sanchis I Nucleic Acids Res. 50 (14) 8349-8362 2022-08-12 2022-07-25
Estimation of the impact of three different bioinformatic pipelines on sheep nemabiome analysis. Baltrušis P, Halvarsson P, Höglund J Parasit Vectors 15 (1) 290 2022-08-11 2022-08-11
Single-cell multi-omics of human preimplantation embryos demonstrates susceptibility to glucocorticoids. Zhao C, Biondic S, Vandal K, ..., Reik W, Petropoulos S Genome Res. - (-) - 2022-08-10 2022-08-10
Nuclear-specific gene expression in heterokaryons of the filamentous ascomycete Neurospora tetrasperma. Meunier C, Darolti I, Reimegård J, Mank JE, Johannesson H Proc. Biol. Sci. 289 (1980) 20220971 2022-08-10 2022-08-10
Metatranscriptomics of Nasopharyngeal Microbiota and Host Distinguish between Pneumonia and Health. Nannapaneni P, Sundh J, Prast-Nielsen S, ..., Naucler P, Henriques-Normark B Am. J. Respir. Crit. Care Med. - (-) - 2022-08-10 2022-08-10
Ageing desexualizes the <i>Drosophila</i> brain transcriptome Malacrinò A, Brengdahl MI, Kimber CM, ..., Mirabello C, Friberg U Proc. R. Soc. B 289 (1980) - 2022-08-10 2022-08-10
Global patterns and rates of habitat transitions across the eukaryotic tree of life. Jamy M, Biwer C, Vaulot D, ..., Massana R, Burki F Nat Ecol Evol - (-) - 2022-08-04 2022-08-04
A multi-layer functional genomic analysis to understand noncoding genetic variation in lipids. Ramdas S, Judd J, Graham SE, ..., Zhu X, Brown CD Am. J. Hum. Genet. 109 (8) 1366-1387 2022-08-04 2022-08-06
Identification and functional characterization of a novel susceptibility locus for small vessel vasculitis with MPO-ANCA. Dahlqvist J, Ekman D, Sennblad B, ..., Eriksson P, Lindblad-Toh K Rheumatology (Oxford) 61 (8) 3461-3470 2022-08-03 2021-12-11
A Genome for Edith's Checkerspot Butterfly: An Insect with Complex Host-Adaptive Suites and Rapid Evolutionary Responses to Environmental Changes. Tunstrom K, Wheat CW, Parmesan C, Singer MC, Mikheyev AS Genome Biol Evol 14 (8) - 2022-08-03 2022-07-26
Spatially resolved clonal copy number alterations in benign and malignant tissue. Erickson A, He M, Berglund E, ..., Lamb AD, Lundeberg J Nature 608 (7922) 360-367 2022-08-00 2022-08-10
Simple and rapid quantification of cetirizine, venlafaxine, and O-desmethylvenlafaxine in human breast milk, and metformin in human milk and plasma with UHPLC-MS/MS Wegler C, Saleh A, Lindqvist A, ..., Smeraglia J, Baranczewski P Journal of Chromatography B 1205 (-) 123340 2022-08-00 2022-08-00
Short- and long-read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing. Latz MAC, Grujcic V, Brugel S, ..., Andersson A, Andersson AF Mol Ecol Resour 22 (6) 2304-2318 2022-08-00 2022-05-06
Reactive melt crosslinking of cellulose nanocrystals/poly(ε-caprolactone) for heat-shrinkable network Avella A, Idström A, Mincheva R, ..., Raquez JM, Lo Re G Composites Part A: Applied Science and Manufacturing - (-) 107166 2022-08-00 2022-08-00
Probing the folding pathways of four-stranded intercalated cytosine-rich motifs at single base-pair resolution. Jamroskovic J, Deiana M, Sabouri N Biochimie 199 (-) 81-91 2022-08-00 2022-04-20
Human adaptation to arsenic in Bolivians living in the Andes. De Loma J, Vicente M, Tirado N, ..., Schlebusch CM, Broberg K Chemosphere 301 (-) 134764 2022-08-00 2022-04-28
Esterified Lignin from Construction and Demolition Waste (CDW) as a Versatile Additive for Polylactic-Acid (PLA) Composites-The Effect of Artificial Weathering on its Performance. Anugwom I, Lahtela V, Hedenström M, ..., Kärki T, Kallioinen-Mänttäri M Glob Chall 6 (8) 2100137 2022-08-00 2022-06-11
Ericaceous dwarf shrubs contribute a significant but drought‐sensitive fraction of soil respiration in a boreal pine forest Mielke LA, Ekblad A, Finlay RD, ..., Lindahl BD, Clemmensen KE J Ecol 110 (8) 1928-1941 2022-08-00 2022-06-15
De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks. Marco Salas S, Yuan X, Sylven C, ..., Wählby C, Partel G PLoS Comput. Biol. 18 (8) e1010366 2022-08-00 2022-08-12
Complement C4 Copy Number Variation is Linked to SSA/Ro and SSB/La Autoantibodies in Systemic Inflammatory Autoimmune Diseases. Lundtoft C, Pucholt P, Martin M, ..., Svenungsson E, Rönnblom L Arthritis & rheumatology (Hoboken, N.J.) 74 (8) 1440-1450 2022-08-00 2022-06-27
Characterization of hemocytes and hematopoietic cells of a freshwater crayfish based on single-cell transcriptome analysis Söderhäll I, Fasterius E, Ekblom C, Söderhäll K iScience 25 (8) 104850 2022-08-00 2022-08-00
Characterization of Pipistrellus pygmaeus Bat Virome from Sweden. Cholleti H, de Jong J, Blomström AL, Berg M Viruses 14 (8) - 2022-07-28 2022-07-28
Structures of Atm1 provide insight into [2Fe-2S] cluster export from mitochondria. Li P, Hendricks AL, Wang Y, ..., Wang K, Gourdon P Nat Commun 13 (1) 4339 2022-07-27 2022-07-27
Inputs of Terrestrial Dissolved Organic Matter Enhance Bacterial Production and Methylmercury Formation in Oxic Coastal Water. Rodríguez J, Andersson A, Björn E, ..., Skrobonja A, Rowe O Front Microbiol 13 (-) 809166 2022-07-27 2022-07-27
Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells. Khatri B, Tessneer KL, Rasmussen A, ..., Nordmark G, Lessard CJ Nat Commun 13 (1) 4287 2022-07-27 2022-07-27
Proliferation and Immune Response Gene Signatures Associated with Clinical Outcome to Immunotherapy and Targeted Therapy in Metastatic Cutaneous Malignant Melanoma. Costa Svedman F, Das I, Tuominen R, ..., Höiom V, Egyhazi Brage S Cancers (Basel) 14 (15) - 2022-07-22 2022-07-22
Polymer Dots as Photoactive Membrane Vesicles for [FeFe]-Hydrogenase Self-Assembly and Solar-Driven Hydrogen Evolution. Pavliuk MV, Lorenzi M, Morado DR, ..., Berggren G, Tian H J. Am. Chem. Soc. - (-) - 2022-07-21 2022-07-21
Claudin5 protects the peripheral endothelial barrier in an organ and vessel-type-specific manner. Richards M, Nwadozi E, Pal S, ..., Nordling S, Claesson-Welsh L Elife 11 (-) - 2022-07-21 2022-07-21
Immunodeficiency syndromes differentially impact the functional profile of SARS-CoV-2-specific T cells elicited by mRNA vaccination. Gao Y, Cai C, Wullimann D, ..., Aleman S, Buggert M Immunity - (-) - 2022-07-19 2022-07-19
Migrating to Long-Read Sequencing for Clinical Routine BCR-ABL1 TKI Resistance Mutation Screening. Schaal W, Ameur A, Olsson-Strömberg U, ..., Cavelier L, Spjuth O Cancer Inform 21 (-) 11769351221110872 2022-07-15 2022-07-15
Galectin-9 and Interferon-Gamma Are Released by Natural Killer Cells upon Activation with Interferon-Alpha and Orchestrate the Suppression of Hepatitis C Virus Infection. Carreca AP, Gaetani M, Busà R, ..., Conaldi PG, Badami E Viruses 14 (7) - 2022-07-14 2022-07-14
Equilibrated evolution of the mixed auto-/allopolyploid haplotype-resolved genome of the invasive hexaploid Prussian carp. Kuhl H, Du K, Schartl M, ..., Stöck M, Lamatsch DK Nat Commun 13 (1) 4092 2022-07-14 2022-07-14
A Hitchhiker's guide through the bio-image analysis software universe. Haase R, Fazeli E, Legland D, ..., Klemm A, Tischer C FEBS Lett. - (-) - 2022-07-14 2022-07-14
Single-cell transcriptional pharmacodynamics of trifluridine in a tumor-immune model. Selvin T, Fasterius E, Jarvius M, ..., Larsson R, Andersson CR Sci Rep 12 (1) 11960 2022-07-13 2022-07-13
Integrated single cell and spatial transcriptomics reveal autoreactive differentiated B cells in joints of early rheumatoid arthritis. Hardt U, Carlberg K, Af Klint E, ..., Ståhl PL, Malmström V Sci Rep 12 (1) 11876 2022-07-13 2022-07-13
High Variability of Fungal Communities Associated with the Functional Tissues and Rhizosphere Soil of Picea abies in the Southern Baltics Marčiulynas A, Marčiulynienė D, Mishcherikova V, ..., Gedminas A, Menkis A Forests 13 (7) 1103 2022-07-13 2022-07-13
An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination. Ballarino R, Bouwman BAM, Agostini F, ..., Bienko M, Crosetto N Sci Data 9 (1) 400 2022-07-12 2022-07-12
FLOWERING LOCUS T paralogs control the annual growth cycle in Populus trees. André D, Marcon A, Lee KC, ..., Schmid M, Nilsson O Curr. Biol. 32 (13) 2988-2996.e4 2022-07-11 2022-06-03
Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system. Pontiller B, Martínez-García S, Joglar V, ..., Teira E, Pinhassi J ISME J - (-) - 2022-07-08 2022-07-08
Genomic and gene expression associations to morphology of a sexual ornament in the chicken. Bakovic V, Höglund A, Martin Cerezo ML, Henriksen R, Wright D G3 (Bethesda) - (-) - 2022-07-08 2022-07-08
B-cell repopulation dynamics and drug pharmacokinetics impact SARS-CoV-2 vaccine efficacy in anti-CD20-treated multiple sclerosis patients. Asplund Högelin K, Ruffin N, Pin E, ..., Piehl F, Al Nimer F Eur. J. Neurol. - (-) - 2022-07-08 2022-07-08
Quantifying the ion coordination strength in polymer electrolytes. Andersson R, Hernández G, Mindemark J Phys Chem Chem Phys 24 (26) 16343-16352 2022-07-06 2022-07-06
Single-cell RNA-sequencing analysis of the developing mouse inner ear identifies molecular logic of auditory neuron diversification. Petitpré C, Faure L, Uhl P, ..., Hadjab S, Lallemend F Nat Commun 13 (1) 3878 2022-07-05 2022-07-05
Patient-Specific Assays Based on Whole-Genome Sequencing Data to Measure Residual Disease in Children With Acute Lymphoblastic Leukemia: A Proof of Concept Study Arthur C, Rezayee F, Mogensen N, ..., Tham E, Barbany G Front Oncol 12 (-) - 2022-07-05 2022-07-05
High-throughput muscle fiber typing from RNA sequencing data. Oskolkov N, Santel M, Parikh HM, ..., Pääbo S, Hansson O Skelet Muscle 12 (1) 16 2022-07-02 2022-07-02
Weak population genetic structure in Eurasian spruce bark beetle over large regional scales in Sweden. Ellerstrand SJ, Choudhury S, Svensson K, ..., Hansson B, Runemark A Ecol Evol 12 (7) e9078 2022-07-00 2022-07-06
Immune responses after omicron infection in triple-vaccinated health-care workers with and without previous SARS-CoV-2 infection. Blom K, Marking U, Havervall S, ..., Klingström J, Thålin C Lancet Infect Dis 22 (7) 943-945 2022-07-00 2022-06-09
Grey wolf genomic history reveals a dual ancestry of dogs. Bergström A, Stanton DWG, Taron UH, ..., Dalén L, Skoglund P Nature 607 (7918) 313-320 2022-07-00 2022-06-29
Genomic dynamics of brown trout populations released to a novel environment. Kurland S, Rafati N, Ryman N, Laikre L Ecol Evol 12 (7) e9050 2022-07-00 2022-07-03
A high content screening assay for discovery of antimycobacterial compounds based on primary human macrophages infected with virulent Mycobacterium tuberculosis. Kalsum S, Otrocka M, Andersson B, ..., Lundbäck T, Lerm M Tuberculosis 135 (-) 102222 2022-07-00 2022-06-16
Evidence for further non-coding RNA genes in the fungal rDNA region Rosenblad MA, Larsson E, Walker A, ..., Wurzbacher C, Nilsson RH MycoKeys 90 (-) 203-213 2022-06-30 2022-06-30
Niche partitioning between planktivorous fish in the pelagic Baltic Sea assessed by DNA metabarcoding, qPCR and microscopy. Novotny A, Jan KMG, Dierking J, Winder M Sci Rep 12 (1) 10952 2022-06-29 2022-06-29
High prevalence of somatic PIK3CA and TP53 pathogenic variants in the normal mammary gland tissue of sporadic breast cancer patients revealed by duplex sequencing. Kostecka A, Nowikiewicz T, Olszewski P, ..., Dumanski JP, Piotrowski A NPJ Breast Cancer 8 (1) 76 2022-06-29 2022-06-29
Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests. Law SR, Serrano AR, Daguerre Y, ..., Street NR, Hurry V Proc. Natl. Acad. Sci. U.S.A. 119 (26) e2118852119 2022-06-28 2022-06-21
Ultrafast and selective labeling of endogenous proteins using affinity-based benzotriazole chemistry. Xin X, Zhang Y, Gaetani M, ..., Corkery DP, Wu Y Chem. Sci. 13 (24) 7240-7246 2022-06-22 2022-05-30
mafba and mafbb differentially regulate lymphatic endothelial cell migration in topographically distinct manners. Arnold H, Panara V, Hußmann M, ..., Schulte-Merker S, Koltowska K Cell Rep 39 (12) 110982 2022-06-21 2022-06-23
Genetic loci and prioritization of genes for kidney function decline derived from a meta-analysis of 62 longitudinal genome-wide association studies. Gorski M, Rasheed H, Teumer A, ..., Kronenberg F, Heid IM Kidney Int. - (-) - 2022-06-16 2022-06-16
Molecular profiling of stem cell-derived retinal pigment epithelial cell differentiation established for clinical translation. Petrus-Reurer S, Lederer AR, Baqué-Vidal L, ..., La Manno G, Lanner F Stem Cell Reports 17 (6) 1458-1475 2022-06-14 2022-06-16
An Adaptable Antibody‐Based Platform for Flexible Synthetic Peptide Delivery Built on Agonistic CD40 Antibodies Eltahir M, Laurén I, Lord M, ..., Persson H, Mangsbo SM Advanced Therapeutics - (-) 2200008 2022-06-14 2022-06-14
Automated detection of vascular remodeling in tumor-draining lymph nodes by the deep-learning tool HEV-finder. Bekkhus T, Avenel C, Hanna S, ..., Wählby C, Ulvmar MH J. Pathol. - (-) - 2022-06-13 2022-06-13
Long-Term Warming of Baltic Sea Coastal Waters Affects Bacterial Communities in Bottom Water and Sediments Differently. Seidel L, Broman E, Ståhle M, ..., Hylander S, Dopson M Front Microbiol 13 (-) 873281 2022-06-10 2022-06-10
Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma. Peña-Perez L, Frengen N, Hauenstein J, ..., Lindstrand A, Månsson R Blood Adv - (-) - 2022-06-08 2022-06-08
Disturbance-based management of ecosystem services and disservices in partial nitritation-anammox biofilms. Suarez C, Sedlacek CJ, Gustavsson DJI, ..., Hermansson M, Persson F NPJ Biofilms Microbiomes 8 (1) 47 2022-06-08 2022-06-08
Bioarchaeological evidence of one of the earliest Islamic burials in the Levant. Srigyan M, Bolívar H, Ureña I, ..., Günther T, Valdiosera C Commun Biol 5 (1) 554 2022-06-07 2022-06-07
Developmental landscape of human forebrain at a single-cell level identifies early waves of oligodendrogenesis. van Bruggen D, Pohl F, Langseth CM, ..., Sundström E, Castelo-Branco G Dev. Cell 57 (11) 1421-1436.e5 2022-06-06 2022-05-05
Accelerated epigenetic aging in suicide attempters uninfluenced by high intent-to-die and choice of lethal methods. Jokinen J, Andersson P, Chatzittofis A, ..., Åsberg M, Boström ADE Transl Psychiatry 12 (1) 224 2022-06-02 2022-06-02
Robust derivation of transplantable dopamine neurons from human pluripotent stem cells by timed retinoic acid delivery. Alekseenko Z, Dias JM, Adler AF, ..., Parmar M, Ericson J Nat Commun 13 (1) 3046 2022-06-01 2022-06-01
<i>Scipion-ED</i>: a graphical user interface for batch processing and analysis of 3D ED/MicroED data Bengtsson VEG, Pacoste L, de la Rosa-Trevin JM, ..., Zou X, Xu H J Appl Cryst J Appl Crystallogr 55 (3) - 2022-06-01 2022-04-22
The mosaic oat genome gives insights into a uniquely healthy cereal crop. Kamal N, Tsardakas Renhuldt N, Bentzer J, ..., Spannagl M, Sirijovski N Nature 606 (7912) 113-119 2022-06-00 2022-05-18
The immune cell atlas of human neuroblastoma Verhoeven BM, Mei S, Olsen TK, ..., Johnsen JI, Baryawno N Cell Reports Medicine - (-) 100657 2022-06-00 2022-06-00
Improving lithium dose prediction using population pharmacokinetics and pharmacogenomics: a cohort genome-wide association study in Sweden Millischer V, Matheson GJ, Bergen SE, ..., Lavebratt C, Schalling M The Lancet Psychiatry 9 (6) 447-457 2022-06-00 2022-06-00
Higher levels of Bifidobacteria and tumor necrosis factor in children with drug-resistant epilepsy are associated with anti-seizure response to the ketogenic diet. Dahlin M, Singleton SS, David JA, ..., Mazumder R, Prast-Nielsen S EBioMedicine 80 (-) 104061 2022-06-00 2022-05-19
Genetic determinants of mannose-binding lectin activity predispose to thromboembolic complications in critical COVID-19. Hultström M, Frithiof R, Grip J, ..., Zeberg H, Eriksson O Nat. Immunol. 23 (6) 861-864 2022-06-00 2022-05-27
Do cold weather temperatures affect the efficacy of skin decontamination? Thors L, Wästerby P, Wigenstam E, ..., Öberg L, Bucht A J Appl Toxicol 42 (6) 961-969 2022-06-00 2021-12-01
Chronic Obstructive Pulmonary Disease Is Associated with Epigenome-Wide Differential Methylation in BAL Lung Cells. Eriksson Ström J, Kebede Merid S, Pourazar J, ..., Behndig AF, Melén E Am J Respir Cell Mol Biol 66 (6) 638-647 2022-06-00 2022-03-15
A new transgenic reporter line reveals expression of protocadherin 9 at a cellular level within the zebrafish central nervous system. Habicher J, Manuel R, Pedroni A, ..., Ampatzis K, Boije H Gene Expr Patterns 44 (-) 119246 2022-06-00 2022-04-12
Development of gut microbiota during the first 2 years of life. Wernroth M, Peura S, Hedman AM, ..., Dicksved J, Fall T Sci Rep 12 (1) 9080 2022-05-31 2022-05-31
The long noncoding RNA ADIPINT regulates human adipocyte metabolism via pyruvate carboxylase. Kerr AG, Wang Z, Wang N, ..., Arner P, Gao H Nat Commun 13 (1) 2958 2022-05-26 2022-05-26
Inflammation and Interferon Signatures in Peripheral B-Lymphocytes and Sera of Individuals With Fibromyalgia Fineschi S, Klar J, Gustafsson KA, ..., Karlsson B, Dahl N Front Immunol 13 (-) - 2022-05-26 2022-05-26
Nitrogen Removal Capacity of Microbial Communities Developing in Compost- and Woodchip-Based Multipurpose Reactive Barriers for Aquifer Recharge With Wastewater. Hellman M, Valhondo C, Martínez-Landa L, ..., Juhanson J, Hallin S Front Microbiol 13 (-) 877990 2022-05-24 2022-05-24
Challenges in Analyzing Functional Epigenetic Data in Perspective of Adolescent Psychiatric Health. Manu DM, Mwinyi J, Schiöth HB Int J Mol Sci 23 (10) - 2022-05-23 2022-05-23
Quantitative Analysis of the Transcriptome of Two Commonly Used Human Monocytic Cell Lines-THP-1 and Mono Mac 6-Reveals Their Arrest during Early Monocyte/Neutrophil Differentiation. Akula S, Lara S, Olsson AK, Hellman L Int J Mol Sci 23 (10) - 2022-05-22 2022-05-22
Ultrastructure and nuclear architecture of telomeric chromatin revealed by correlative light and electron microscopy. Hübner B, von Otter E, Ahsan B, ..., Ludwig A, Sandin S Nucleic Acids Res. 50 (9) 5047-5063 2022-05-20 2022-05-01
Touch signaling and thigmomorphogenesis are regulated by complementary CAMTA3- and JA-dependent pathways. Darwish E, Ghosh R, Ontiveros-Cisneros A, ..., Khan K, Van Aken O Sci Adv 8 (20) eabm2091 2022-05-20 2022-05-20
A nucleotide-sensing oligomerization mechanism that controls NrdR-dependent transcription of ribonucleotide reductases. Rozman Grinberg I, Martínez-Carranza M, Bimai O, ..., Sjöberg BM, Stenmark P Nat Commun 13 (1) 2700 2022-05-16 2022-05-16
Satellite DNA evolution in Corvoidea inferred from short and long reads Peona V, Kutschera VE, Blom MPK, Irestedt M, Suh A Mol Ecol - (-) - 2022-05-14 2022-05-14
Genome-wide association meta-analysis identifies 48 risk variants and highlights the role of the stria vascularis in hearing loss. Trpchevska N, Freidin MB, Broer L, ..., Williams FMK, Nagtegaal AP Am. J. Hum. Genet. - (-) - 2022-05-12 2022-05-12
Hepatocyte Thorns, A Novel Drug-Induced Stress Response in Human and Mouse Liver Spheroids. Pridgeon CS, Bolhuis DP, Milosavljević F, ..., Jukić MM, Ingelman-Sundberg M Cells 11 (10) - 2022-05-10 2022-05-10
Seasonal and Spatial Variations in Synechococcus Abundance and Diversity Throughout the Gullmar Fjord, Swedish Skagerrak. Laber CP, Pontiller B, Bunse C, ..., Pinhassi J, Farnelid H Front Microbiol 13 (-) 828459 2022-05-09 2022-05-09
Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability. Kierczak M, Rafati N, Höglund J, ..., Karlsson T, Johansson Å Nat Commun 13 (1) 2532 2022-05-09 2022-05-09
Anti-citrullinated protein antibody specificities and pulmonary fibrosis in relation to genetic loci in early rheumatoid arthritis. Brink M, Ljung L, Hansson M, ..., Klareskog L, Rantapää-Dahlqvist S Rheumatology (Oxford) - (-) - 2022-05-09 2022-05-09
Modulation of RNA stability regulates gene expression in two opposite ways: through buffering of RNA levels upon global perturbations and by supporting adapted differential expression. Faucillion M, Johansson A, Larsson J Nucleic Acids Res. 50 (8) 4372-4388 2022-05-06 2022-04-08
Evaluating metagenomic assembly approaches for biome-specific gene catalogues. Delgado LF, Andersson AF Microbiome 10 (1) 72 2022-05-06 2022-05-06
Real-time evaluation of glioblastoma growth in patient-specific zebrafish xenografts. Almstedt E, Rosén E, Gloger M, ..., Krona C, Nelander S Neuro-oncology 24 (5) 726-738 2022-05-04 2021-12-18
FOXO Dictates Initiation of B Cell Development and Myeloid Restriction in Common Lymphoid Progenitors. Peña-Pérez L, Kharazi S, Frengen N, ..., Luc S, Månsson R Front Immunol 13 (-) 880668 2022-05-04 2022-05-04
Genomic Impact of Whaling in North Atlantic Fin Whales. Wolf M, de Jong M, Halldórsson SD, Árnason Ú, Janke A Mol. Biol. Evol. 39 (5) - 2022-05-03 2022-05-06
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Massive genome inversion drives coexistence of divergent morphs in common quails. Sanchez-Donoso I, Ravagni S, Rodríguez-Teijeiro JD, ..., Leonard JA, Vilà C Curr. Biol. 32 (2) 462-469.e6 2022-01-24 2021-11-29
Fish Skin Microbiomes Are Highly Variable Among Individuals and Populations but Not Within Individuals. Berggren H, Tibblin P, Yıldırım Y, ..., Lundin D, Forsman A Front Microbiol 12 (-) 767770 2022-01-21 2022-01-21
Nutrient driven transcriptional changes during phage infection in an aquatic Gammaproteobacterium. Nilsson E, Li K, Hoetzinger M, Holmfeldt K Environ. Microbiol. - (-) - 2022-01-20 2022-01-20
An Image-Analysis-Based Method for the Prediction of Recombinant Protein Fiber Tensile Strength. Bäcklund FG, Schmuck B, Miranda GHB, ..., Rydén J, Rising A Materials (Basel) 15 (3) - 2022-01-18 2022-01-18
Cold case: The disappearance of Egypt bee virus, a fourth distinct master strain of deformed wing virus linked to honeybee mortality in 1970's Egypt. de Miranda JR, Brettell LE, Chejanovsky N, ..., Martin SJ, Ball BV Virol J 19 (1) 12 2022-01-15 2022-01-15
Transcriptome Analysis of an Aedes albopictus Cell Line Single- and Dual-Infected with Lammi Virus and WNV. Öhlund P, Delhomme N, Hayer J, Hesson JC, Blomström A Int J Mol Sci 23 (2) - 2022-01-14 2022-01-14
Plant Growth-Promoting Activity of Pseudomonas aeruginosa FG106 and Its Ability to Act as a Biocontrol Agent against Potato, Tomato and Taro Pathogens. Ghadamgahi F, Tarighi S, Taheri P, ..., Ortiz R, Vetukuri RR Biology (Basel) 11 (1) - 2022-01-14 2022-01-14
3D Microvascularized Tissue Models by Laser-Based Cavitation Molding of Collagen. Enrico A, Voulgaris D, Östmans R, ..., Herland A, Stemme G Adv Mater - (-) e2109823 2022-01-14 2022-01-14
Circulating proteins reveal prior use of menopausal hormonal therapy and increased risk of breast cancer. Thomas CE, Dahl L, Byström S, ..., Schwenk JM, Gabrielson M Transl Oncol 17 (-) 101339 2022-01-13 2022-01-13
The formation of avian montane diversity across barriers and along elevational gradients. Pujolar JM, Blom MPK, Reeve AH, ..., Irestedt M, Jønsson KA Nat Commun 13 (1) 268 2022-01-12 2022-01-12
SARS-CoV-2 induces a durable and antigen specific humoral immunity after asymptomatic to mild COVID-19 infection. Havervall S, Jernbom Falk A, Klingström J, ..., Nilsson P, Thålin C PLoS ONE 17 (1) e0262169 2022-01-12 2022-01-12
Anaplerotic flux into the Calvin-Benson cycle: hydrogen isotope evidence for in vivo occurrence in C3 metabolism. Wieloch T, Augusti A, Schleucher J New Phytol. - (-) - 2022-01-12 2022-01-12
Transcriptomic analysis reveals proinflammatory signatures associated with acute myeloid leukemia progression. Stratmann S, Yones SA, Garbulowski M, ..., Komorowski J, Holmfeldt L Blood Adv 6 (1) 152-164 2022-01-11 2021-10-08
Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities. Westmeijer G, Mehrshad M, Turner S, ..., Bertilsson S, Dopson M Commun Biol 5 (1) 37 2022-01-11 2022-01-11
Canonical WNT signaling-dependent gating of MYC requires a noncanonical CTCF function at a distal binding site. Chachoua I, Tzelepis I, Dai H, ..., Mehmood R, Göndör A Nat Commun 13 (1) 204 2022-01-11 2022-01-11
Fungal Perspective of Pine and Oak Colonization in Mediterranean Degraded Ecosystems Adamo I, Dashevskaya S, Alday JG Forests 13 (1) 88 2022-01-08 2022-01-08
Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina. Gutiérrez-Valencia J, Fracassetti M, Horvath R, ..., Kolář F, Slotte T Mol. Biol. Evol. 39 (1) - 2022-01-07 2021-12-09
MYC assembles and stimulates topoisomerases 1 and 2 in a "topoisome". Das SK, Kuzin V, Cameron DP, ..., Levens D, Baranello L Mol. Cell 82 (1) 140-158.e12 2022-01-06 2021-12-09
Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Romdhane S, Spor A, Banerjee S, ..., Saghai A, Philippot L Environ Microbiome 17 (1) 1 2022-01-06 2022-01-06
Metabolic resistance to the inhibition of mitochondrial transcription revealed by CRISPR-Cas9 screen. Mennuni M, Filograna R, Felser A, ..., Lytovchenko O, Larsson N EMBO Rep. 23 (1) e53054 2022-01-05 2021-11-15
Backbone chemical shift assignment and dynamics of the N-terminal domain of ClpB from Francisella tularensis type VI secretion system. Mushtaq AU, Ådén J, Alam A, Sjöstedt A, Gröbner G Biomol NMR Assign - (-) - 2022-01-05 2022-01-05
Risk of Revision After Arthroplasty Associated with Specific Gene Loci: A Genomewide Association Study of Single-Nucleotide Polymorphisms in 1,130 Twins Treated with Arthroplasty. Brüggemann A, Eriksson N, Michaëlsson K, Hailer NP J Bone Joint Surg Am - (-) - 2022-01-04 2022-01-04
Transcriptome sequencing of archived lymphoma specimens is feasible and clinically relevant using exome capture technology. Skaftason A, Qu Y, Abdulla M, ..., Rosenquist R, Mansouri L Genes Chromosomes Cancer 61 (1) 27-36 2022-01-00 2021-10-23
Sustained Response to Entrectinib in an Infant With a Germline ALKAL2 Variant and Refractory Metastatic Neuroblastoma With Chromosomal 2p Gain and Anaplastic Lymphoma Kinase and Tropomyosin Receptor Kinase Activation Treis D, Umapathy G, Fransson S, ..., Martinsson T, Kogner P JCO Precision Oncology - (6) - 2022-01-00 2022-01-00
Super-Resolution Imaging of the Filtration Barrier Suggests a Role for Podocin R229Q in Genetic Predisposition to Glomerular Disease. Butt L, Unnersjö-Jess D, Höhne M, ..., Schermer B, Benzing T J. Am. Soc. Nephrol. 33 (1) 138-154 2022-01-00 2021-12-01
Salivary IgG to SARS-CoV-2 indicates seroconversion and correlates to serum neutralization in mRNA-vaccinated immunocompromised individuals Healy K, Pin E, Chen P, ..., Aleman S, Chen MS Med - (-) - 2022-01-00 2022-01-00
Proteome-scale mapping of binding sites in the unstructured regions of the human proteome. Benz C, Ali M, Krystkowiak I, ..., Davey NE, Ivarsson Y Mol. Syst. Biol. 18 (1) e10584 2022-01-00 2022-01-20
Prolonged estrogen deprivation triggers a broad immunosuppressive phenotype in breast cancer cells Hühn D, Martí‐Rodrigo P, Mouron S, ..., Carreras‐Puigvert J, Fernandez‐Capetillo O Mol Oncol 16 (1) 148-165 2022-01-00 2021-08-29
Imitation of β-lactam binding enables broad-spectrum metallo-β-lactamase inhibitors. Brem J, Panduwawala T, Hansen JU, ..., Walsh TR, Schofield CJ Nat Chem 14 (1) 15-24 2022-01-00 2021-12-13
Fibroblast growth factor 23 is associated with risk of intracerebral hemorrhage. Svensson EH, Söderholm M Eur. J. Neurol. 29 (1) 114-120 2022-01-00 2021-08-31
Exploiting low-grade waste heat to produce electricity through supercapacitor containing carbon electrodes and ionic liquid electrolytes Haque M, Abdurrokhman I, Idström A, ..., Lundgren P, Enoksson P Electrochimica Acta 403 (-) 139640 2022-01-00 2022-01-00
Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severity. Fallerini C, Picchiotti N, Baldassarri M, ..., Renieri A, Furini S Hum. Genet. 141 (1) 147-173 2022-01-00 2021-12-10
Amplification of ERBB2 (HER2) in embryonal rhabdomyosarcoma: A potential treatment target in rare cases? Mitra S, Sydow S, Magnusson L, ..., Gisselsson D, Mertens F Genes Chromosomes Cancer 61 (1) 5-9 2022-01-00 2021-09-01
Metabolomics analysis of cerebrospinal fluid suggests citric acid cycle aberrations in bipolar disorder Smedler E, Salehi AM, Pelanis A, ..., Sparding T, Landén M Neuroscience Applied 1 (-) 100108 2022-00-00 2022-00-00
Design of a green chemoenzymatic cascade for scalable synthesis of bio-based styrene alternatives Petermeier P, Bittner JP, Müller S, Byström E, Kara S Green Chem. - (-) - 2022-00-00 2022-00-00
A complementary chemical probe approach towards customized studies of G-quadruplex DNA structures in live cells Prasad B, Doimo M, Andréasson M, ..., Chorell E, Wanrooij S Chem. Sci. 13 (8) 2347-2354 2022-00-00 2022-00-00

Publications 7.1.2