Clinical Genomics Umeå (22 publications)

SciLifeLab Infrastructure Unit Since 2019.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2019

Ended: Current

Year 2024

Genetic analysis and family screening for dilated cardiomyopathy: a retrospective analysis of the stepwise pedigree approach.

Ylipää J, Andersson T

Scand Cardiovasc J 58 (1) 2379356 [2024-12-00; online 2024-07-24]

Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities.

Eisfeldt J, Ameur A, Lenner F, ..., Feuk L, Lindstrand A

Genome Res. 34 (11) 1774-1784 [2024-11-20; online 2024-11-20]

Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative] Clinical Genomics Uppsala [Collaborative] NGI Long read [Technology development] NGI Uppsala (Uppsala Genome Center) [Technology development] National Genomics Infrastructure [Technology development]

PubMed DOI Crossref

Parvimonas micra forms a distinct bacterial network with oral pathobionts in colorectal cancer patients.

Löwenmark T, Köhn L, Kellgren T, ..., Edin S, Palmqvist R

J Transl Med 22 (1) 947 [2024-10-17; online 2024-10-17]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

PubMed DOI Crossref

Epidemiology and ecology of the sylvatic cycle of African Swine Fever Virus in Kenya.

Obanda V, Akinyi M, King'ori E, ..., Stenberg-Lewerin S, Lwande OW

Virus Res. 348 (-) 199434 [2024-10-00; online 2024-07-19]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

DOI Crossref

Fraggler: A Python Package and CLI Tool for Automated Fragment Analysis

Rosenbaum W, Larsson P

JOSS 9 (100) 6869 [2024-08-26; online 2024-08-26]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

PubMed DOI Crossref

Hybrid capture-based next-generation sequencing of new and old world Orthohantavirus strains and wild-type Puumala isolates from humans and bank voles.

Rosenbaum W, Bovinder Ylitalo E, Castel G, ..., Pettersson L, Tuiskunen Bäck A

J. Clin. Virol. 172 (-) 105672 [2024-06-00; online 2024-03-30]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

Year 2023

PubMed DOI Crossref

DNA methylation variations and epigenetic aging in telomere biology disorders.

Carlund O, Norberg A, Osterman P, ..., Degerman S, Hultdin M

Sci Rep 13 (1) 7955 [2023-05-16; online 2023-05-16]

Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

Plasma Concentrations of Gut Hormones Acyl Ghrelin and Peptide YY and Subsequent Risk of Colorectal Cancer and Molecular Tumor Subtypes.

Bodén S, Harbs J, Sundkvist A, ..., Harlid S, Van Guelpen B

Cancer Prev Res (Phila) 16 (2) 75-87 [2023-02-06; online 2022-11-12]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

PubMed DOI Crossref

Immune-Activated B Cells Are Dominant in Prostate Cancer.

Saudi A, Banday V, Zirakzadeh AA, ..., Winqvist O, Sherif A

Cancers (Basel) 15 (3) - [2023-02-01; online 2023-02-01]

Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

Extracellular Galectin 4 Drives Immune Evasion and Promotes T-cell Apoptosis in Pancreatic Cancer.

Lidström T, Cumming J, Gaur R, ..., Patthey C, Öhlund D

Cancer Immunol Res 11 (1) 72-92 [2023-01-03; online 2022-12-09]

Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Umeå [Service]

Year 2022

PubMed DOI Crossref

Parvimonas micra is associated with tumour immune profiles in molecular subtypes of colorectal cancer.

Löwenmark T, Li X, Löfgren-Burström A, ..., Edin S, Palmqvist R

Cancer Immunol. Immunother. 71 (10) 2565-2575 [2022-10-00; online 2022-03-17]

Affinity Proteomics Uppsala [Service] Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

Implementing precision medicine in a regionally organized healthcare system in Sweden.

Fioretos T, Wirta V, Cavelier L, ..., Edsjö A, Rosenquist R

Nat. Med. 28 (10) 1980-1982 [2022-10-00; online 2022-09-20]

Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Linköping [Service] Clinical Genomics Stockholm [Collaborative] Clinical Genomics Umeå [Service] Clinical Genomics Uppsala [Collaborative]

PubMed DOI Crossref

To Modify or Not to Modify: Allele-Specific Effects of 3'UTR-KCNQ1 Single Nucleotide Polymorphisms on Clinical Phenotype in a Long QT 1 Founder Population Segregating a Dominant-Negative Mutation.

Winbo A, Diamant UB, Persson J, Jensen SM, Rydberg A

J Am Heart Assoc 11 (18) e025981 [2022-09-20; online 2022-09-14]

Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

TCF4 trinucleotide repeat expansion in Swedish cases with Fuchs' endothelial corneal dystrophy.

Viberg A, Westin IM, Golovleva I, Byström B

Acta Ophthalmol 100 (5) 541-548 [2022-08-00; online 2021-10-13]

Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

Long-Term Follow-Up of Newborns with 22q11 Deletion Syndrome and Low TRECs

Framme JL, Lundqvist C, Lundell AC, ..., Oskarsdóttir S, Ekwall O

J Clin Immunol 42 (3) 618-633 [2022-04-00; online 2022-01-26]

Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

A Study Protocol for Validation and Implementation of Whole-Genome and -Transcriptome Sequencing as a Comprehensive Precision Diagnostic Test in Acute Leukemias.

Berglund E, Barbany G, Orsmark-Pietras C, ..., Fioretos T, Rosenquist R

Front Med (Lausanne) 9 (-) 842507 [2022-03-24; online 2022-03-24]

Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Collaborative] Clinical Genomics Umeå [Service] Clinical Genomics Uppsala [Collaborative]

PubMed DOI Crossref

Clinical and biological relevance of the transcriptomic-based prostate cancer metastasis subtypes MetA-C.

Thysell E, Köhn L, Semenas J, ..., Bergh A, Wikström P

Mol Oncol 16 (4) 846-859 [2022-02-00; online 2021-12-27]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Umeå [Service]

Year 2021

PubMed DOI Crossref

A modified protein marker panel to identify four consensus molecular subtypes in colorectal cancer using immunohistochemistry.

Li X, Larsson P, Ljuslinder I, ..., Edin S, Palmqvist R

Pathol Res Pract 220 (-) 153379 [2021-04-00; online 2021-03-05]

Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

Year 2020

PubMed DOI Crossref

Parvimonas micra as a putative non-invasive faecal biomarker for colorectal cancer.

Löwenmark T, Löfgren-Burström A, Zingmark C, ..., Edin S, Palmqvist R

Sci Rep 10 (1) 15250 [2020-09-17; online 2020-09-17]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

PubMed DOI Crossref

DNA methylation and copy number variation profiling of T-cell lymphoblastic leukemia and lymphoma.

Haider Z, Landfors M, Golovleva I, ..., Hultdin M, Degerman S

Blood Cancer J 10 (4) 45 [2020-04-28; online 2020-04-28]

Clinical Genomics [Service] Clinical Genomics Umeå [Service]

PubMed DOI Crossref

Ex Vivo Organoid Cultures Reveal the Importance of the Tumor Microenvironment for Maintenance of Colorectal Cancer Stem Cells.

Li X, Larsson P, Ljuslinder I, ..., Edin S, Palmqvist R

Cancers (Basel) 12 (4) 923 [2020-04-10; online 2020-04-10]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]

Year 2019

PubMed DOI Crossref

An integrated transcriptome analysis in T-cell acute lymphoblastic leukemia links DNA methylation subgroups to dysregulated TAL1 and ANTP homeobox gene expression.

Haider Z, Larsson P, Landfors M, ..., Hultdin M, Degerman S

Cancer Med 8 (1) 311-324 [2019-01-00; online 2018-12-21]

Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]