Read-Based Phasing and Analysis of Phased Variants with WhatsHap.

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Martin M, Ebert P, Marschall T

Methods Mol. Biol. 2590 (-) 127-138 [2022-11-07; online 2022-11-07]

WhatsHap is a command-line tool for phasing and phasing-related tasks. It allows to infer haplotypes in diploid and polyploid samples based on (preferably long) reads covering at least two heterozygous variants. It offers additional tools for working with phased variant calls such as computing statistics, comparing different phasings and assigning reads in alignment files to their haplotype.

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PubMed 36335496

DOI 10.1007/978-1-0716-2819-5_8

Crossref 10.1007/978-1-0716-2819-5_8