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Schwenk JM
JSON
CSV
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TXT
Family name
Schwenk
Given name
Jochen M
Initials
JM
ORCID
ORCID
0000-0001-8141-8449
Affiliations
Science for Life Laboratory, Department of Protein Science, KTH Royal Institute of Technology, Stockholm, Sweden.
98 publications
PubMed
DOI
Crossref
Proteome profiling of home-sampled dried blood spots reveals proteins of SARS-CoV-2 infections.
Fredolini C
, Dodig-Crnković T,
Bendes A
, ...,
Roxhed N
,
Schwenk JM
Commun Med (Lond)
4
(1) 55 [2024-04-02; online 2024-04-02]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Service]
PubMed
DOI
Crossref
The impact of circulating protein levels identified by affinity proteomics on short-term, overall breast cancer risk.
Grassmann F
, Mälarstig A,
Dahl L
, ...,
Schwenk JM
, Czene K
Br. J. Cancer
130
(4) 620-627 [2024-03-00; online 2023-12-22]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Evaluation of circulating plasma proteins in breast cancer using Mendelian randomisation.
Mälarstig A
, Grassmann F,
Dahl L
, ..., Czene K,
Hedman ÅK
Nat Commun
14
(1) 7680 [2023-11-24; online 2023-11-24]
Affinity Proteomics Uppsala [Service]
Bioinformatics Support for Computational Resources [Service]
PubMed
DOI
Crossref
A Longitudinal Study of Individual Radiation Responses in Pediatric Patients Treated with Proton and Photon Radiotherapy, and Interventional Cardiology: Rationale and Research Protocol of the HARMONIC Project.
Andreassi MG
, Haddy N, Harms-Ringdahl M, ...,
Fuentes M
,
Haghdoost S
Int J Mol Sci
24
(9) - [2023-05-08; online 2023-05-08]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models.
Allesøe RL,
Lundgaard AT
,
Hernández Medina R
, ...,
Brunak S
, IMI DIRECT Consortium
Nat. Biotechnol.
-
(-) - [2023-01-02; online 2023-01-02]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Microfluidic Device for Patient-Centric Multiplexed Assays with Readout in Centralized Laboratories.
Hauser J
, Dale M, Beck O, ..., Fredolini C,
Roxhed N
Anal. Chem.
-
(-) - [2022-12-22; online 2022-12-22]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Genetic Landscape of the ACE2 Coronavirus Receptor.
Yang Z
, Macdonald-Dunlop E,
Chen J
, ..., Wilson JF,
Shen X
Circulation
145
(18) 1398-1411 [2022-05-03; online 2022-04-07]
Affinity Proteomics Stockholm [Service]
NGI SNP genotyping [Service]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
National Genomics Infrastructure [Service]
DOI
Crossref
Plasma Proteome Fingerprints Reveal Distinctiveness and Clinical Outcome of SARS-CoV-2 Infection
Bauer W
, Weber M, Diehl-Wiesenecker E, ...,
Micke P
,
Kappert K
Viruses
13
(12) 2456 [2021-12-07; online 2021-12-07]
Affinity Proteomics Stockholm [Service]
PubMed
DOI
Crossref
Identification of Endothelial Proteins in Plasma Associated With Cardiovascular Risk Factors.
Iglesias MJ
,
Kruse LD
, Sanchez-Rivera L, ...,
Odeberg J
,
Butler LM
Arterioscler. Thromb. Vasc. Biol.
41
(12) 2990-3004 [2021-12-00; online 2021-10-28]
Affinity Proteomics Stockholm [Service]
PubMed
DOI
Crossref
Elevated circulating follistatin associates with an increased risk of type 2 diabetes.
Wu C, Borné Y, Gao R, ...,
Groop L
,
De Marinis Y
Nat Commun
12
(1) 6486 [2021-11-10; online 2021-11-10]
Affinity Proteomics Stockholm [Collaborative]
Affinity Proteomics Uppsala [Service]
PubMed
DOI
Crossref
Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients.
Zeybel M, Altay O,
Arif M
, ...,
Borén J
,
Mardinoglu A
Mol. Syst. Biol.
17
(10) e10459 [2021-10-00; online 2021-10-26]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Multianalyte serology in home-sampled blood enables an unbiased assessment of the immune response against SARS-CoV-2.
Roxhed N
,
Bendes A
,
Dale M
, ...,
Fredolini C
,
Schwenk JM
Nat Commun
12
(1) 3695 [2021-06-17; online 2021-06-17]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Circulating proteins associated with allergy development in infants-an exploratory analysis.
Stockfelt M
, Hong M, Hesselmar B, ..., Lundell A, Rudin A
Clin Proteomics
18
(1) 11 [2021-03-15; online 2021-03-15]
Affinity Proteomics Stockholm [Service]
PubMed
DOI
Crossref
Longitudinal plasma protein profiling of newly diagnosed type 2 diabetes.
Gummesson A
, Björnson E, Fagerberg L, ...,
Uhlén M
, Bergström G
EBioMedicine
63
(-) 103147 [2021-01-00; online 2020-12-03]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Genetics meets proteomics: perspectives for large population-based studies.
Suhre K
,
McCarthy MI
,
Schwenk JM
Nat. Rev. Genet.
22
(1) 19-37 [2021-01-00; online 2020-08-28]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Whole blood co-expression modules associate with metabolic traits and type 2 diabetes: an IMI-DIRECT study.
Gudmundsdottir V, Pedersen HK, Mazzoni G, ..., Pedersen O,
Brunak S
Genome Med
12
(1) 109 [2020-12-01; online 2020-12-01]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
A high-stringency blueprint of the human proteome.
Adhikari S, Nice EC, Deutsch EW, ...,
Aebersold R
,
Baker MS
Nat Commun
11
(1) 5301 [2020-10-16; online 2020-10-16]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Profiles of histidine-rich glycoprotein associate with age and risk of all-cause mortality.
Hong MG
,
Dodig-Crnković T
, Chen X, ..., Magnusson PK,
Schwenk JM
Life Sci. Alliance
3
(10) e202000817 [2020-10-00; online 2020-07-31]
Affinity Proteomics Stockholm [Collaborative]
Autoimmunity and Serology Profiling [Service]
Bioinformatics Support for Computational Resources [Service]
PubMed
DOI
Crossref
Integration of molecular profiles in a longitudinal wellness profiling cohort.
Tebani A,
Gummesson A
,
Zhong W
, ...,
Uhlen M
,
Fagerberg L
Nat Commun
11
(1) 4487 [2020-09-08; online 2020-09-08]
Affinity Proteomics Stockholm [Collaborative]
Autoimmunity and Serology Profiling [Collaborative]
Bioinformatics Long-term Support WABI [Collaborative]
Bioinformatics Support for Computational Resources [Service]
Bioinformatics Support, Infrastructure and Training [Collaborative]
Cellular Immunomonitoring [Collaborative]
Swedish Metabolomics Centre (SMC) [Collaborative]
PubMed
DOI
Crossref
Facets of individual-specific health signatures determined from longitudinal plasma proteome profiling.
Dodig-Crnković T
,
Hong MG
, Thomas CE, ...,
Uhlén M
,
Schwenk JM
EBioMedicine
57
(-) 102854 [2020-07-00; online 2020-07-03]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Whole-genome sequence association analysis of blood proteins in a longitudinal wellness cohort.
Zhong W, Gummesson A, Tebani A, ..., Fagerberg L,
Uhlén M
Genome Med
12
(1) 53 [2020-06-23; online 2020-06-23]
Affinity Proteomics Stockholm [Collaborative]
Bioinformatics Support for Computational Resources [Service]
PubMed
DOI
Crossref
Predicting and elucidating the etiology of fatty liver disease: A machine learning modeling and validation study in the IMI DIRECT cohorts.
Atabaki-Pasdar N
,
Ohlsson M
,
Viñuela A
, ..., Pavo I,
Franks PW
PLoS Med.
17
(6) e1003149 [2020-06-00; online 2020-06-19]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Molecular Profiling for Predictors of Radiosensitivity in Patients with Breast or Head-and-Neck Cancer.
Drobin K,
Marczyk M
, Halle M, ...,
Schwenk JM
,
Haghdoost S
Cancers (Basel)
12
(3) 753 [2020-03-22; online 2020-03-22]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Newborn Screening for Presymptomatic Diagnosis of Complement and Phagocyte Deficiencies.
Dezfouli M, Bergström S, Skattum L, ...,
Nilsson P
, Hammarström L
Front Immunol
11
(-) 455 [2020-03-17; online 2020-03-17]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.
Ignjatovic V, Geyer PE,
Palaniappan KK
, ...,
Deutsch EW
,
Schwenk JM
J. Proteome Res.
18
(12) 4085-4097 [2019-12-06; online 2019-10-11]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
The human secretome
Uhlén M
, Karlsson MJ, Hober A, ..., Fagerberg L, Sivertsson Å
Sci. Signal.
12
(609) eaaz0274 [2019-11-26; online 2019-11-26]
Affinity Proteomics Stockholm [Collaborative]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
Spatial Proteomics [Collaborative]
PubMed
DOI
Crossref
Multiplexed analysis of the secretin-like GPCR-RAMP interactome.
Lorenzen E
,
Dodig-Crnković T
,
Kotliar IB
, ...,
Schwenk JM
,
Sakmar TP
Sci Adv
5
(9) eaaw2778 [2019-09-00; online 2019-09-18]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Systematic Development of Sandwich Immunoassays for the Plasma Secretome.
Häussler RS
, Bendes A, Iglesias M, ..., Qundos U,
Schwenk JM
Proteomics
19
(15) e1900008 [2019-08-00; online 2019-07-22]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Screening a Resource of Recombinant Protein Fragments for Targeted Proteomics.
Edfors F, Forsström B, Vunk H, ...,
Schwenk JM
,
Uhlen M
J. Proteome Res.
18
(7) 2706-2718 [2019-07-05; online 2019-06-07]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Development of parallel reaction monitoring assays for cerebrospinal fluid proteins associated with Alzheimer's disease.
Andersson A, Remnestål J, Nellgård B, ...,
Nilsson P
,
Fredolini C
Clin. Chim. Acta
494
(-) 79-93 [2019-07-00; online 2019-03-09]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles.
Fredolini C
, Byström S, Sanchez-Rivera L, ...,
Lehtiö J
,
Schwenk JM
Sci Rep
9
(1) 8324 [2019-06-06; online 2019-06-06]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
Bioinformatics Support for Computational Resources [Service]
Global Proteomics and Proteogenomics [Technology development]
PubMed
DOI
Crossref
Targeted Analysis of Serum Proteins Encoded at Known Inflammatory Bowel Disease Risk Loci.
Drobin K, Assadi G, Hong MG, ..., D'Amato M, Halfvarson J
Inflamm Bowel Dis
25
(2) 306-316 [2019-01-10; online 2018-10-26]
Affinity Proteomics Stockholm [Collaborative]
Bioinformatics Support for Computational Resources [Service]
Drug Discovery and Development (DDD) [Collaborative]
PubMed
DOI
Crossref
Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project.
Omenn GS
,
Lane L
,
Overall CM
, ...,
Baker MS
,
Deutsch EW
J. Proteome Res.
17
(12) 4031-4041 [2018-12-07; online 2018-08-23]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Detection of autoantibodies against cancer-testis antigens in non-small cell lung cancer.
Djureinovic D, Dodig-Crnković T, Hellström C, ...,
Schwenk JM
, Micke P
Lung Cancer
125
(-) 157-163 [2018-11-00; online 2018-09-17]
Autoimmunity and Serology Profiling [Service]
Bioinformatics Support for Computational Resources [Service]
PubMed
DOI
Crossref
Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage.
Matic LP, Jesus Iglesias M, Vesterlund M, ..., Odeberg J, Hedin U
JACC Basic Transl Sci
3
(4) 464-480 [2018-08-00; online 2018-08-01]
Affinity Proteomics Stockholm [Collaborative]
Bioinformatics Support for Computational Resources [Service]
Global Proteomics and Proteogenomics [Collaborative]
PubMed
DOI
Crossref
Multiplexed Antigen Bead Arrays for the Assessment of Antibody Selectivity and Epitope Mapping.
Ayoglu B,
Nilsson P
,
Schwenk JM
Methods Mol. Biol.
1785
(-) 239-248 [2018-05-02; online 2018-05-02]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
High-Density Antigen Microarrays for the Assessment of Antibody Selectivity and Off-Target Binding.
Sjöberg R
, Andersson E, Hellström C, ...,
Nilsson P
, Ayoglu B
Methods Mol. Biol.
1785
(-) 231-238 [2018-05-02; online 2018-05-02]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
Bioinformatics Support for Computational Resources [Service]
PubMed
DOI
Crossref
Current applications of antibody microarrays.
Chen Z, Dodig-Crnković T,
Schwenk JM
, Tao SC
Clin Proteomics
15
(-) 7 [2018-02-28; online 2018-02-28]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Affinity proteomic profiling of plasma for proteins associated to area-based mammographic breast density.
Byström S, Eklund M, Hong MG, ...,
Schwenk JM
, Gabrielson M
Breast Cancer Res.
20
(1) 14 [2018-02-14; online 2018-02-14]
Affinity Proteomics Stockholm [Collaborative]
Bioinformatics Support for Computational Resources [Service]
PubMed
DOI
Crossref
U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.
Glimelius B, Melin B, Enblad G, ...,
Palmqvist R
, Sjöblom T
Acta Oncol
57
(2) 187-194 [2018-02-00; online 2017-06-20]
Tissue Profiling [Collaborative]
PubMed
DOI
Crossref
The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays.
Schwenk JM
,
Omenn GS
, Sun Z, ...,
Moritz RL
,
Deutsch EW
J. Proteome Res.
16
(12) 4299-4310 [2017-12-01; online 2017-10-10]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Thiol-ene-epoxy thermoset for low-temperature bonding to biofunctionalized microarray surfaces.
Zhou XC,
Sjöberg R
, Druet A, ..., Haraldsson T, Carlborg CF
Lab Chip
17
(21) 3672-3681 [2017-10-25; online 2017-10-05]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
A pathology atlas of the human cancer transcriptome.
Uhlen M
,
Zhang C
,
Lee S
, ...,
Mardinoglu A
,
Ponten F
Science
357
(6352) eaan2507 [2017-08-18; online 2017-08-19]
Bioinformatics Support for Computational Resources [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
Tissue Profiling [Technology development]
PubMed
DOI
Crossref
Untargeted screening for novel autoantibodies with prognostic value in first-episode psychosis.
Zandian A, Wingård L, Nilsson H, ...,
Nilsson P
, Persson MAA
Transl Psychiatry
7
(7) e1177 [2017-07-25; online 2017-07-25]
Autoimmunity and Serology Profiling [Collaborative]
Tissue Profiling [Collaborative]
PubMed
DOI
Crossref
High-Density Serum/Plasma Reverse Phase Protein Arrays.
Hellström C, Dodig-Crnković T, Hong MG, ...,
Nilsson P
,
Sjöberg R
Methods Mol. Biol.
1619
(-) 229-238 [2017-07-05; online 2017-07-05]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Bead-Based and Multiplexed Immunoassays for Protein Profiling via Sequential Affinity Capture.
Birgersson E,
Schwenk JM
, Ayoglu B
Methods Mol. Biol.
1619
(-) 45-54 [2017-07-05; online 2017-07-05]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Affinity Proteomics Exploration of Melanoma Identifies Proteins in Serum with Associations to T-Stage and Recurrence.
Byström S,
Fredolini C
, Edqvist PH, ..., Pontén F,
Schwenk JM
Transl Oncol
10
(3) 385-395 [2017-06-00; online 2017-04-20]
Affinity Proteomics Stockholm [Collaborative]
Tissue Profiling [Collaborative]
PubMed
DOI
Crossref
A subcellular map of the human proteome.
Thul PJ
,
Åkesson L
,
Wiking M
, ...,
Uhlén M
,
Lundberg E
Science
356
(6340) - [2017-05-26; online 2017-05-11]
Bioinformatics Support for Computational Resources [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
Spatial Proteomics [Collaborative]
PubMed
DOI
Crossref
Neuroproteomic Profiling of Cerebrospinal Fluid (CSF) by Multiplexed Affinity Arrays.
Häggmark-Månberg A,
Nilsson P
,
Schwenk JM
Methods Mol. Biol.
1598
(-) 247-254 [2017-05-17; online 2017-05-17]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
A Preliminary Report: Radical Surgery and Stem Cell Transplantation for the Treatment of Patients With Pancreatic Cancer.
Omazic B, Ayoglu B, Löhr M, ..., Maeurer MJ, Ringden O
J. Immunother.
40
(4) 132-139 [2017-05-00; online 2017-03-25]
Affinity Proteomics Stockholm [Collaborative]
Autoimmunity and Serology Profiling [Collaborative]
PubMed
DOI
Crossref
Discovery of circulating proteins associated to knee radiographic osteoarthritis.
Lourido L, Ayoglu B, Fernández-Tajes J, ...,
Nilsson P
, Blanco FJ
Sci Rep
7
(1) 137 [2017-03-09; online 2017-03-09]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Whole-Proteome Peptide Microarrays for Profiling Autoantibody Repertoires within Multiple Sclerosis and Narcolepsy.
Zandian A, Forsström B, Häggmark-Månberg A, ...,
Nilsson P
, Ayoglu B
J. Proteome Res.
16
(3) 1300-1314 [2017-03-03; online 2017-02-09]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Identification of a Novel Autoimmune Peptide Epitope of Prostein in Prostate Cancer.
Pin E, Henjes F, Hong MG, ...,
Nilsson P
,
Schwenk JM
J. Proteome Res.
16
(1) 204-216 [2017-01-06; online 2016-10-05]
Autoimmunity and Serology Profiling [Collaborative]
PubMed
DOI
Crossref
Elevated levels of circulating CDH5 and FABP1 in association with human drug-induced liver injury.
Mikus M, Drobin K, Gry M, ...,
Nilsson P
, Schuppe-Koistinen I
Liver Int.
37
(1) 132-140 [2017-01-00; online 2016-05-26]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
PDGFB, a new candidate plasma biomarker for venous thromboembolism: results from the VEREMA affinity proteomics study.
Bruzelius M,
Iglesias MJ
,
Hong MG
, ...,
Trégouët DA
,
Odeberg J
Blood
128
(23) e59-e66 [2016-12-08; online 2016-10-14]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
CSF profiling of the human brain enriched proteome reveals associations of neuromodulin and neurogranin to Alzheimer's disease.
Remnestål J, Just D, Mitsios N, ...,
Nilsson P
, Häggmark-Månberg A
Proteomics Clin Appl
10
(12) 1242-1253 [2016-12-00; online 2016-10-10]
Affinity Proteomics Stockholm [Collaborative]
Fluorescence Tissue Profiling [Collaborative]
PubMed
DOI
Crossref
Multidimensional Normalization to Minimize Plate Effects of Suspension Bead Array Data.
Hong MG, Lee W,
Nilsson P
, Pawitan Y,
Schwenk JM
J. Proteome Res.
15
(10) 3473-3480 [2016-10-07; online 2016-08-30]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Exploration of high-density protein microarrays for antibody validation and autoimmunity profiling.
Sjöberg R
, Mattsson C, Andersson E, ..., Ayoglu B,
Nilsson P
N Biotechnol
33
(5 Pt A) 582-592 [2016-09-25; online 2015-09-30]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Autoantibody targets in vaccine-associated narcolepsy.
Häggmark-Månberg A, Zandian A, Forsström B, ..., Olsson T,
Nilsson P
Autoimmunity
49
(6) 421-433 [2016-09-00; online 2016-05-20]
Autoimmunity and Serology Profiling [Collaborative]
PubMed
DOI
Crossref
Elevated levels of FN1 and CCL2 in bronchoalveolar lavage fluid from sarcoidosis patients.
Hamsten C, Wiklundh E, Grönlund H, ..., Grunewald J, Häggmark-Månberg A
Respir. Res.
17
(1) 69 [2016-06-04; online 2016-06-04]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Antigen arrays for profiling autoantibody repertoires.
Ayoglu B,
Schwenk JM
,
Nilsson P
Bioanalysis
8
(10) 1105-1126 [2016-05-00; online 2016-04-22]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Multiplexed protein profiling by sequential affinity capture.
Ayoglu B, Birgersson E,
Mezger A
, ...,
Nilsson P
,
Schwenk JM
Proteomics
16
(8) 1251-1256 [2016-04-00; online 2016-03-31]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Neuroproteomic profiling of human body fluids.
Häggmark A,
Schwenk JM
,
Nilsson P
Proteomics Clin Appl
10
(4) 485-502 [2016-04-00; online 2015-10-12]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Anoctamin 2 identified as an autoimmune target in multiple sclerosis.
Ayoglu B, Mitsios N, Kockum I, ..., Olsson T,
Nilsson P
Proc. Natl. Acad. Sci. U.S.A.
113
(8) 2188-2193 [2016-02-23; online 2016-02-09]
Autoimmunity and Serology Profiling [Collaborative]
Fluorescence Tissue Profiling [Collaborative]
PubMed
DOI
Crossref
Immunocapture strategies in translational proteomics.
Fredolini C
, Byström S, Pin E, ...,
Nilsson P
,
Schwenk JM
Expert Rev Proteomics
13
(1) 83-98 [2015-11-11; online 2015-11-11]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Heat differentiated complement factor profiling.
Hamsten C, Skattum L, Truedsson L, ...,
Nilsson P
, Neiman M
J Proteomics
126
(-) 155-162 [2015-08-03; online 2015-06-07]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer.
O'Hurley G, Busch C, Fagerberg L, ...,
Uhlén M
, Pontén F
PLoS ONE
10
(8) e0133449 [2015-08-03; online 2015-08-03]
Affinity Proteomics Stockholm
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
Spatial Proteomics
Tissue Profiling [Technology development]
PubMed
DOI
Crossref
Circulating carnosine dipeptidase 1 associates with weight loss and poor prognosis in gastrointestinal cancer.
Arner P, Henjes F,
Schwenk JM
, ...,
Nilsson P
, Rydén M
PLoS ONE
10
(4) e0123566 [2015-04-21; online 2015-04-21]
Affinity Proteomics Stockholm
PubMed
DOI
Crossref
Proteomic profiling reveals autoimmune targets in sarcoidosis.
Häggmark A, Hamsten C, Wiklundh E, ..., Grunewald J,
Nilsson P
Am. J. Respir. Crit. Care Med.
191
(5) 574-583 [2015-03-01; online 2015-01-22]
Autoimmunity and Serology Profiling [Collaborative]
Tissue Profiling [Collaborative]
PubMed
DOI
Crossref
Proteomics. Tissue-based map of the human proteome.
Uhlén M
, Fagerberg L, Hallström BM, ...,
Nielsen J
, Pontén F
Science
347
(6220) 1260419 [2015-01-23; online 2015-01-24]
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
Spatial Proteomics
Tissue Profiling [Technology development]
PubMed
DOI
Crossref
Affinity proteomic profiling of plasma, cerebrospinal fluid, and brain tissue within multiple sclerosis.
Byström S, Ayoglu B, Häggmark A, ...,
Nilsson P
,
Schwenk JM
J. Proteome Res.
13
(11) 4607-4619 [2014-11-07; online 2014-09-19]
Affinity Proteomics Stockholm [Collaborative]
Fluorescence Tissue Profiling
PubMed
DOI
Crossref
Analysis of autoantibody profiles in osteoarthritis using comprehensive protein array concepts.
Henjes F, Lourido L, Ruiz-Romero C, ...,
Nilsson P
, Fuentes M
J. Proteome Res.
13
(11) 5218-5229 [2014-11-07; online 2014-10-09]
Autoimmunity and Serology Profiling [Collaborative]
PubMed
DOI
Crossref
Parallel barcoding of antibodies for DNA-assisted proteomics.
Dezfouli M, Vickovic S, Iglesias MJ,
Schwenk JM
, Ahmadian A
Proteomics
14
(21-22) 2432-2436 [2014-11-00; online 2014-09-30]
Affinity Proteomics Stockholm [Technology development]
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
PubMed
DOI
Crossref
Plasma profiling reveals three proteins associated to amyotrophic lateral sclerosis.
Häggmark A, Mikus M, Mohsenchian A, ..., Kuźma-Kozakiewicz M,
Nilsson P
Ann Clin Transl Neurol
1
(8) 544-553 [2014-08-00; online 2014-07-14]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Affinity proteomics within rare diseases: a BIO-NMD study for blood biomarkers of muscular dystrophies.
Ayoglu B, Chaouch A, Lochmüller H, ...,
Nilsson P
, Al-Khalili Szigyarto C
EMBO Mol Med
6
(7) 918-936 [2014-07-00; online 2014-06-13]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Bead arrays for antibody and complement profiling reveal joint contribution of antibody isotypes to C3 deposition.
Ayoglu B, Szarka E, Huber K, ...,
Nilsson P
, Papp K
PLoS ONE
9
(5) e96403 [2014-05-05; online 2014-05-05]
Affinity Proteomics Stockholm [Collaborative]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Affinity proteomics reveals elevated muscle proteins in plasma of children with cerebral malaria.
Bachmann J, Burté F, Pramana S, ..., Fernandez-Reyes D,
Nilsson P
PLoS Pathog.
10
(4) e1004038 [2014-04-00; online 2014-04-17]
Affinity Proteomics Stockholm [Collaborative]
DOI
Crossref
Analysis of plasma from prostate cancer patients links decreased carnosine dipeptidase 1 levels to lymph node metastasis
Qundos U, Johannesson H,
Fredolini C
, ...,
Nilsson P
,
Schwenk JM
Translational Proteomics
2
(-) 14-24 [2014-03-00; online 2014-03-00]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics.
Fagerberg L, Hallström BM, Oksvold P, ..., Ponten F,
Uhlén M
Mol. Cell Proteomics
13
(2) 397-406 [2014-02-00; online 2013-12-07]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
Spatial Proteomics
Tissue Profiling
PubMed
DOI
Crossref
Magnetic bead assisted labeling of antibodies at nanogram scale.
Dezfouli M, Vickovic S, Iglesias MJ, ...,
Schwenk JM
, Ahmadian A
Proteomics
14
(1) 14-18 [2014-01-00; online 2013-12-07]
Affinity Proteomics Stockholm [Technology development]
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
PubMed
DOI
Crossref
Profiling post-centrifugation delay of serum and plasma with antibody bead arrays.
Qundos U, Hong M, Tybring G, ...,
Nilsson P
,
Schwenk JM
J Proteomics
95
(-) 46-54 [2013-12-16; online 2013-05-02]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Selectivity analysis of single binder assays used in plasma protein profiling.
Neiman M,
Fredolini C
, Johansson H, ...,
Nilsson P
,
Schwenk JM
Proteomics
13
(23-24) 3406-3410 [2013-12-00; online 2013-10-24]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Identification of candidate serum proteins for classifying well-differentiated small intestinal neuroendocrine tumors.
Darmanis S, Cui T, Drobin K, ...,
Schwenk JM
, Giandomenico V
PLoS ONE
8
(11) e81712 [2013-11-25; online 2013-11-25]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Autoantibody profiling in multiple sclerosis using arrays of human protein fragments.
Ayoglu B, Häggmark A, Khademi M, ...,
Schwenk JM
,
Nilsson P
Mol. Cell Proteomics
12
(9) 2657-2672 [2013-09-00; online 2013-06-05]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Antibody-based profiling of cerebrospinal fluid within multiple sclerosis.
Häggmark A, Byström S, Ayoglu B, ...,
Schwenk JM
,
Nilsson P
Proteomics
13
(15) 2256-2267 [2013-08-00; online 2013-05-23]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Highly multiplexed antibody suspension bead arrays for plasma protein profiling.
Drobin K,
Nilsson P
,
Schwenk JM
Methods Mol. Biol.
1023
(-) 137-145 [2013-06-15; online 2013-06-15]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP).
Fagerberg L, Oksvold P, Skogs M, ..., von Feilitzen K,
Uhlén M
J. Proteome Res.
12
(6) 2439-2448 [2013-06-07; online 2013-01-02]
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
Spatial Proteomics
Tissue Profiling
PubMed
DOI
Crossref
Antibodies for profiling the human proteome-The Human Protein Atlas as a resource for cancer research.
Asplund A, Edqvist PH,
Schwenk JM
, Pontén F
Proteomics
12
(13) 2067-2077 [2012-07-00; online 2012-05-25]
Affinity Proteomics Stockholm [Technology development]
Tissue Profiling
PubMed
DOI
Crossref
Validation of affinity reagents using antigen microarrays.
Sjöberg R
, Sundberg M, Gundberg A, ...,
Uhlén M
,
Nilsson P
N Biotechnol
29
(5) 555-563 [2012-06-15; online 2011-12-03]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Classification of protein profiles from antibody microarrays using heat and detergent treatment.
Häggmark A, Neiman M, Drobin K, ...,
Nilsson P
,
Schwenk JM
N Biotechnol
29
(5) 564-570 [2012-06-15; online 2011-10-26]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Variance decomposition of protein profiles from antibody arrays using a longitudinal twin model.
Kato BS, Nicholson G, Neiman M, ..., Spector TD,
Schwenk JM
Proteome Sci
9
(-) 73 [2011-11-17; online 2011-11-17]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
Plasma profiling reveals human fibulin-1 as candidate marker for renal impairment.
Neiman M, Hedberg JJ, Dönnes PR, ...,
Schwenk JM
,
Nilsson P
J. Proteome Res.
10
(11) 4925-4934 [2011-11-04; online 2011-09-29]
Affinity Proteomics Stockholm [Collaborative]
PubMed
DOI
Crossref
The Human Protein Atlas as a proteomic resource for biomarker discovery.
Pontén F,
Schwenk JM
, Asplund A, Edqvist PH
J. Intern. Med.
270
(5) 428-446 [2011-11-00; online 2011-08-03]
Affinity Proteomics Stockholm [Technology development]
Tissue Profiling
PubMed
DOI
Crossref
Generation of monospecific antibodies based on affinity capture of polyclonal antibodies.
Hjelm B, Forsström B, Igel U, ..., Johansson C,
Uhlén M
Protein Sci.
20
(11) 1824-1835 [2011-11-00; online 2011-09-08]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
Spatial Proteomics
PubMed
DOI
Crossref
Antibody suspension bead arrays.
Schwenk JM
,
Nilsson P
Methods Mol. Biol.
723
(-) 29-36 [2011-03-04; online 2011-03-04]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Systematic antibody and antigen-based proteomic profiling with microarrays.
Ayoglu B, Häggmark A, Neiman M, ...,
Schwenk JM
,
Nilsson P
Expert Rev. Mol. Diagn.
11
(2) 219-234 [2011-03-00; online 2011-03-17]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
PubMed
DOI
Crossref
Toward next generation plasma profiling via heat-induced epitope retrieval and array-based assays.
Schwenk JM
, Igel U, Neiman M, ...,
Nilsson P
,
Uhlen M
Mol. Cell Proteomics
9
(11) 2497-2507 [2010-11-00; online 2010-08-05]
Affinity Proteomics Stockholm [Technology development]
PubMed
DOI
Crossref
Comparative protein profiling of serum and plasma using an antibody suspension bead array approach.
Schwenk JM
, Igel U, Kato BS, ...,
Uhlén M
,
Nilsson P
Proteomics
10
(3) 532-540 [2010-02-00; online 2009-12-03]
Affinity Proteomics Stockholm [Technology development]
SciLifeLab Data Centre
Publications
9.5.1