Pinhassi J

Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper.

Fridolfsson E, Bunse C, Lindehoff E, ..., Legrand C, Hylander S

Sci Rep 13 (1) 11865 [2023-07-22; online 2023-07-22]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community.

Massing JC, Fahimipour AK, Bunse C, Pinhassi J, Gross T

mSystems 8 (3) e0002823 [2023-06-29; online 2023-05-31]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities.

Seidel L, Broman E, Nilsson E, ..., Forsman A, Dopson M

ISME J 17 (6) 855-869 [2023-06-00; online 2023-03-28]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Warmer temperatures favor slower-growing bacteria in natural marine communities.

Abreu CI, Dal Bello M, Bunse C, Pinhassi J, Gore J

Sci Adv 9 (19) eade8352 [2023-05-10; online 2023-05-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter.

Osbeck CMG, Lundin D, Karlsson C, ..., Moran MA, Pinhassi J

PLoS ONE 17 (11) e0243406 [2022-11-17; online 2022-11-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system.

Pontiller B, Martínez-García S, Joglar V, ..., Teira E, Pinhassi J

ISME J 16 (10) 2360-2372 [2022-10-00; online 2022-07-08]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities.

Westmeijer G, Mehrshad M, Turner S, ..., Bertilsson S, Dopson M

Commun Biol 5 (1) 37 [2022-01-11; online 2022-01-11]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Oxygen‐deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments

Capo E, Broman E, Bonaglia S, ..., Nascimento FJA, Björn E

Limnol Oceanogr 67 (1) 135-146 [2022-01-00; online 2021-11-18]

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Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord.

Pontiller B, Pérez-Martínez C, Bunse C, ..., Lundin D, Pinhassi J

mSystems 6 (6) e0057521 [2021-12-21; online 2021-12-14]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae.

Schön ME, Zlatogursky VV, Singh RP, ..., Wideman JG, Burki F

Nat Commun 12 (1) 6651 [2021-11-17; online 2021-11-17]

Bioinformatics Support for Computational Resources [Service] Microbial Single Cell Genomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Microbial Plankton Community Structure and Function Responses to Vitamin B12 and B1 Amendments in an Upwelling System.

Joglar V, Pontiller B, Martínez-García S, ..., Fernández E, Teira E

Appl. Environ. Microbiol. 87 (22) e0152521 [2021-10-28; online 2021-09-08]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Terrestrial dissolved organic matter inflow drives temporal dynamics of the bacterial community of a subarctic estuary (northern Baltic Sea).

Figueroa D, Capo E, Lindh MV, ..., Pinhassi J, Andersson A

Environ. Microbiol. 23 (8) 4200-4213 [2021-08-00; online 2021-06-01]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Dynamics of Baltic Sea phages driven by environmental changes.

Hoetzinger M, Nilsson E, Arabi R, ..., Middelboe M, Holmfeldt K

Environ. Microbiol. 23 (8) 4576-4594 [2021-08-00; online 2021-07-07]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]