Publications

Title Authors Journal Published Online
Effects of bottom trawling and environmental factors on benthic bacteria, meiofauna and macrofauna communities and benthic ecosystem processes. Bradshaw C, Iburg S, Morys C, ..., Jonsson P, Nascimento FJA Sci. Total Environ. 921 (-) 171076 2024-04-15 2024-02-19
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells Senftleben ML, Bajor A, Hirata E, Abrahamsson S, Brismar H Biomed. Opt. Express 15 (4) 2281 2024-04-01 2024-03-11
Influence of divalent cations on the extraction of organic acids in coffee determined by GC-MS and NMR. Bratthäll T, Figueira J, Nording ML Heliyon 10 (5) e26625 2024-03-15 2024-02-17
The super-pangenome of Populus unveil genomic facets for its adaptation and diversification in widespread forest trees. Shi T, Zhang X, Hou Y, ..., Yin T, Wang J Mol Plant - (-) - 2024-03-13 2024-03-13
Cardiac biopsies reveal differences in transcriptomics between left and right ventricle in patients with or without diagnostic signs of heart failure. Frisk C, Das S, Eriksson MJ, ..., Linde C, Persson B Sci Rep 14 (1) 5811 2024-03-09 2024-03-09
Estrogen receptor activation remodels TEAD1 gene expression to alleviate hepatic steatosis. Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C Mol. Syst. Biol. - (-) - 2024-03-08 2024-03-08
Identification of microbial pathogens in Neolithic Scandinavian humans. Bergfeldt N, Kırdök E, Oskolkov N, ..., Storå J, Götherström A Sci Rep 14 (1) 5630 2024-03-07 2024-03-07
The serological immunogenicity of the third and fourth doses of COVID-19 vaccine in patients with inflammatory rheumatic diseases on different biologic or targeted DMARDs: a Swedish nationwide study (COVID-19-REUMA). Frodlund M, Nived P, Chatzidionysiou K, ..., Klareskog L, Kapetanovic M Microbiol Spectr - (-) e0298123 2024-03-05 2024-03-05
Loss of chromosome Y in regulatory T cells. Mattisson J, Halvardson J, Davies H, ..., Dumanski JP, Forsberg LA BMC Genomics 25 (1) 243 2024-03-05 2024-03-05
Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France. Simões LG, Peyroteo-Stjerna R, Marchand G, ..., Günther T, Jakobsson M Proc. Natl. Acad. Sci. U.S.A. 121 (10) e2310545121 2024-03-05 2024-02-26
fhl2b mediates extraocular muscle protection in zebrafish models of muscular dystrophies and its ectopic expression ameliorates affected body muscles. Dennhag N, Kahsay A, Nissen I, ..., von Hofsten J, Pedrosa Domellöf F Nat Commun 15 (1) 1950 2024-03-02 2024-03-02
Genetic constraints in genes exhibiting splicing plasticity in facultative diapause. Steward RA, Pruisscher P, Roberts KT, Wheat CW Heredity (Edinb) 132 (3) 142-155 2024-03-00 2024-01-30
Enhancer mutations modulate the severity of chemotherapy-induced myelosuppression. Zhigulev A, Norberg Z, Cordier J, ..., Gréen H, Sahlén P Life Sci. Alliance 7 (3) - 2024-03-00 2024-01-16
Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening. Gezelius H, Enblad AP, Lundmark A, ..., Andersson C, Nordlund J NAR Genom Bioinform 6 (1) lqae001 2024-03-00 2024-01-29
Population genomic analyses reveal that salinity and geographic isolation drive diversification in a free-living protist. Rengefors K, Annenkova N, Wallenius J, ..., Kremp A, Ahrén D Sci Rep 14 (1) 4986 2024-02-29 2024-02-29
New insights into complex formation by SARS-CoV-2 nsp10 and nsp14. Sele C, Krupinska E, Andersson Rasmussen A, ..., Fisher SZ, Knecht W Nucleosides Nucleotides Nucleic Acids - (-) 1-15 2024-02-29 2024-02-29
Quantifying Fluorescence Lifetime Responsiveness of Environment-Sensitive Probes for Membrane Fluidity Measurements Ragaller et al J. Phys. Chem. B - (-) - 2024-02-28 2024-02-28
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells. Chen JP, Diekmann C, Wu H, ..., Bienko M, Crosetto N Nat Commun 15 (1) 1768 2024-02-27 2024-02-27
Gene flow and an anomaly zone complicate phylogenomic inference in a rapidly radiated avian family (Prunellidae). Jiang Z, Zang W, Ericson PGP, ..., Lei F, Qu Y BMC Biol. 22 (1) 49 2024-02-27 2024-02-27
Intestinal stroma guides monocyte differentiation to macrophages through GM-CSF. Kvedaraite E, Lourda M, Mouratidou N, ..., Henter JI, Svensson M Nat Commun 15 (1) 1752 2024-02-26 2024-02-26
Dynamics of Gut Bacteria Across Different Zooplankton Genera in the Baltic Sea. Xu T, Novotny A, Zamora-Terol S, Hambäck PA, Winder M Microb. Ecol. 87 (1) 48 2024-02-26 2024-02-26
No link between type I interferon autoantibody positivity and adverse reactions to COVID-19 vaccines. Yalcinkaya A, Cavalli M, Cederholm A, ..., Wadelius M, Landegren N NPJ Vaccines 9 (1) 42 2024-02-22 2024-02-22
The effect of nitrogen source and levels on hybrid aspen tree physiology and wood formation. Renström A, Choudhary S, Gandla ML, ..., Jämtgård S, Tuominen H Physiol Plantarum 176 (1) e14219 2024-02-21 2024-02-21
Clonally heritable gene expression imparts a layer of diversity within cell types. Mold JE, Weissman MH, Ratz M, ..., Michaëlsson J, Frisén J Cell Syst 15 (2) 149-165.e10 2024-02-21 2024-02-09
Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos. Hold K, Lord E, Brealey JC, ..., Martin MD, Dussex N Sci Rep 14 (1) 4143 2024-02-20 2024-02-20
Lymphocytic colitis can be transcriptionally divided into channelopathic and inflammatory lymphocytic colitis. Bhardwaj A, Münch A, Montague J, ..., Rosenstiel P, Escudero-Hernández C United European Gastroenterol J - (-) - 2024-02-17 2024-02-17
Male-transmitted transgenerational effects of the herbicide linuron on DNA methylation profiles in Xenopus tropicalis brain and testis. Roza M, Eriksson ANM, Svanholm S, Berg C, Karlsson O Sci. Total Environ. 923 (-) 170949 2024-02-15 2024-02-15
Gene co-expression network analysis reveal core responsive genes in Parascaris univalens tissues following ivermectin exposure. Dube F, Delhomme N, Martin F, ..., Svärd S, Tydén E PLoS ONE 19 (2) e0298039 2024-02-15 2024-02-15
Disability and emotional symptoms in women with lipedema: A comparison with overweight/obese women. Chachaj A, Jeziorek M, Dudka I, ..., Kujawa K, Szuba A Adv Clin Exp Med - (-) - 2024-02-13 2024-02-13
Asymmetric nucleosome PARylation at DNA breaks mediates directional nucleosome sliding by ALC1. Bacic L, Gaullier G, Mohapatra J, ..., Sabantsev A, Deindl S Nat Commun 15 (1) 1000 2024-02-02 2024-02-02
Xist ribonucleoproteins promote female sex-biased autoimmunity. Dou DR, Zhao Y, Belk JA, ..., Utz PJ, Chang HY Cell 187 (3) 733-749.e16 2024-02-01 2024-02-03
Structural and functional insight into the interaction of Clostridioides difficile toxin B and FZD7. Kinsolving J, Bous J, Kozielewicz P, ..., Dong M, Schulte G Cell Rep 43 (2) 113727 2024-02-01 2024-02-01
A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern. Höglund J, Dias G, Olsen RA, ..., Talla V, Backström N Genome Biol Evol 16 (2) - 2024-02-01 2024-02-18
Recent increase in species-wide diversity after interspecies introgression in the highly endangered Iberian lynx. Lucena-Perez M, Paijmans JLA, Nocete F, ..., Barlow A, Godoy JA Nat Ecol Evol 8 (2) 282-292 2024-02-00 2024-01-15
Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles. Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C Life Sci. Alliance 7 (2) - 2024-02-00 2023-11-20
CPAP may promote an endothelial inflammatory milieu in sleep apnoea after coronary revascularization Peker Y, Celik Y, Behboudi A, ..., Gottlieb DJ, Jelic S EBioMedicine - (-) 105015 2024-02-00 2024-02-00
Single-cell RNA-seq mapping of chicken peripheral blood leukocytes. Maxwell M, Söderlund R, Härtle S, Wattrang E BMC Genomics 25 (1) 124 2024-01-29 2024-01-29
Spatial Transcriptomics in a Case of Follicular Thyroid Carcinoma Reveals Clone-Specific Dysregulation of Genes Regulating Extracellular Matrix in the Invading Front. Condello V, Paulsson JO, Zedenius J, Näsman A, Juhlin CC Endocr. Pathol. - (-) - 2024-01-27 2024-01-27
High-parametric protein maps reveal the spatial organization in early-developing human lung Sariyar S, Sountoulidis A, Hansen JN, ..., Lundberg E, Ayoglu B - - (-) - 2024-01-25 2024-01-25
Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton. Grujčić V, Saarenpää S, Sundh J, ..., Foster RA, Andersson AF PLoS ONE 19 (1) e0296672 2024-01-19 2024-01-19
Remodeling of the human skeletal muscle proteome found after long-term endurance training but not after strength training. Emanuelsson EB, Arif M, Reitzner SM, ..., Sundberg CJ, Chapman MA iScience 27 (1) 108638 2024-01-19 2023-12-05
Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals. Kırdök E, Kashuba N, Damlien H, ..., Aravena A, Götherström A Sci Rep 13 (1) 22125 2024-01-18 2024-01-18
Targeting the Main Protease (Mpro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies. Altincekic N, Jores N, Löhr F, ..., Sreeramulu S, Schwalbe H ACS Chem. Biol. - (-) - 2024-01-17 2024-01-17
High-throughput analysis of membrane fluidity unveils a hidden dimension in immune cell states Andronico LA, Jiang Y, Carannante V, ..., Brodin P, Sezgin E - - (-) - 2024-01-16 2024-01-16
Erythroid Differentiation Enhances RNA Mis-Splicing in SF3B1-Mutant Myelodysplastic Syndromes with Ring Sideroblasts. Moura PL, Mortera-Blanco T, Hofman IJ, ..., Jacobsen SEW, Hellström-Lindberg E Cancer Res. 84 (2) 211-225 2024-01-16 2023-11-03
Apoptosis-mediated ADAM10 activation removes a mucin barrier promoting T cell efferocytosis. Drexhage LZ, Zhang S, Dupont M, ..., Karaji N, Sattentau QJ Nat Commun 15 (1) 541 2024-01-15 2024-01-15
A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile. Lindelöf L, Rantapää-Dahlqvist S, Lundtoft C, ..., Svenungsson E, Eriksson O J. Autoimmun. 143 (-) 103166 2024-01-13 2024-01-13
Profiling of Surface Protein Epitopes on Viral Particles by Multiplex Dual-Reporter Strategy Sahi M, Andersson S, Mattson C, ..., Chiodi F, Fredolini C J Vis Exp - (203) - 2024-01-12 2024-01-12
Furan Distribution as a Severity Indicator upon Organosolv Fractionation of Hardwood Sawdust through a Novel Ternary Solvent System Thoresen PP, Delgado Vellosillo I, Lange H, ..., Christakopoulos P, Matsakas L ACS Sustainable Chem. Eng. - (-) - 2024-01-12 2024-01-12
Colony phase variation switch modulates antimicrobial tolerance and biofilm formation in Acinetobacter baumannii. Mushtaq F, Nadeem A, Yabrag A, ..., Uhlin BE, Ahmad I Microbiol Spectr - (-) e0295623 2024-01-11 2024-01-11
A pan-genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin. Biderre-Petit C, Courtine D, Hennequin C, ..., Divne A, Hochart C Mol Ecol Resour - (-) e13923 2024-01-08 2024-01-08
Sex-limited experimental evolution drives transcriptomic divergence in a hermaphrodite. Cīrulis A, Nordén AK, Churcher AM, ..., Zadesenets KS, Abbott JK Genome Biol Evol 16 (1) - 2024-01-05 2023-12-29
Nuclear Hsp104 safeguards the dormant translation machinery during quiescence. Kohler V, Kohler A, Berglund LL, ..., Andréasson C, Büttner S Nat Commun 15 (1) 315 2024-01-05 2024-01-05
METTL3 drives telomere targeting of TERRA lncRNA through m6A-dependent R-loop formation: a therapeutic target for ALT-positive neuroblastoma. Vaid R, Thombare K, Mendez A, ..., Fischer M, Mondal T Nucleic Acids Res. - (-) - 2024-01-05 2024-01-05
Humoral immune responses to the monovalent XBB.1.5-adapted BNT162b2 mRNA booster in Sweden. Marking U, Bladh O, Aguilera K, ..., Sheward DJ, Thålin C Lancet Infect Dis - (-) - 2024-01-05 2024-01-05
METTL17 is an Fe-S cluster checkpoint for mitochondrial translation. Ast T, Itoh Y, Sadre S, ..., Amunts A, Mootha VK Mol. Cell - (-) - 2024-01-04 2024-01-04
Identification of a Notch transcriptomic signature for breast cancer. Braune EB, Geist F, Tang X, ..., Wienke D, Lendahl U Breast Cancer Res. 26 (1) 4 2024-01-03 2024-01-03
Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network. Hunt G, Vaid R, Pirogov S, ..., Reimegård J, Mannervik M Genome Biol. 25 (1) 2 2024-01-02 2024-01-02
Functional annotation of a divergent genome using sequence and structure-based similarity. Svedberg D, Winiger RR, Berg A, ..., Vossbrinck CR, Barandun J BMC Genomics 25 (1) 6 2024-01-02 2024-01-02
A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea. Latz MAC, Andersson A, Brugel S, ..., Torstensson A, Andersson AF Sci Data 11 (1) 18 2024-01-02 2024-01-02
Global Transcriptome Analysis Reveals Distinct Phases of the Endothelial Response to TNF. Struck EC, Belova T, Hsieh PH, ..., Dusart PJ, Butler LM J. Immunol. 212 (1) 117-129 2024-01-01 2023-11-29
A biobased binder of carboxymethyl cellulose, citric acid, chitosan and wheat gluten for nonwoven and paper. Wennman M, Pinon AC, Svagan AJ, Hellberg M, Hedenqvist MS Carbohydr Polym 323 (-) 121430 2024-01-01 2023-09-23
Whole-genome selective sweep analyses identifies the region and candidate gene associated with white earlobe color in Mediterranean chickens. Guo Y, Rubin CJ, Rönneburg T, ..., Hu X, Carlborg Ö Poult. Sci. 103 (1) 103232 2024-01-00 2023-10-24
Population genomics of the muskox' resilience in the near absence of genetic variation. Pečnerová P, Lord E, Garcia-Erill G, ..., Moltke I, Siegismund HR Mol. Ecol. 33 (2) e17205 2024-01-00 2023-11-16
Phylogenomics and topological conflicts in the tribe Anthospermeae (Rubiaceae). Thureborn O, Wikström N, Razafimandimbison SG, Rydin C Ecol Evol 14 (1) e10868 2024-01-00 2024-01-25
New indicators for monitoring genetic diversity applied to alpine brown trout populations using whole genome sequence data. Kurland S, Saha A, Keehnen N, ..., Ryman N, Laikre L Mol. Ecol. 33 (2) e17213 2024-01-00 2023-11-28
New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system. Bittner MJ, Bannon CC, Rowland E, ..., Paerl RW, Riemann L ISME COMMUN. 4 (1) ycad016 2024-01-00 2024-01-10
Effects of Wholegrain Compared to Refined Grain Intake on Cardiometabolic Risk Markers, Gut Microbiota, and Gastrointestinal Symptoms in Children: A Randomized Crossover Trial. Madsen MTB, Landberg R, Nielsen DS, ..., Lauritzen L, Damsgaard CT Am. J. Clin. Nutr. 119 (1) 18-28 2024-01-00 2023-10-28
Proteomic profiles associated with postsurgical progression in non-functioning pituitary adenomas. Hallén T, Johannsson G, Thorsell A, ..., Bergquist J, Skoglund T J. Clin. Endocrinol. Metab. - (-) - 2023-12-29 2023-12-29
Simultaneous detection of membrane contact dynamics and associated Ca2+signals by reversible chemogenetic reporters Casas PG, Rossini M, Påvénius L, ..., Pizzo P, Filadi R - - (-) - 2023-12-28 2023-12-28
Gastrointestinal parasite community structure in horses after the introduction of selective anthelmintic treatment strategies. Halvarsson P, Grandi G, Hägglund S, Höglund J Vet Parasitol 326 (-) 110111 2023-12-25 2023-12-25
Metabolites, ions, and the mechanisms behind seasonal cold hardening of Pyrochroa coccinea (Pyrochroidae) larvae. Jedal JYB, Malmendal A, Ramløv H J Insect Physiol 153 (-) 104610 2023-12-24 2023-12-24
Biodistribution of DNA-origami nanostructures in live zebrafish embryos with single-cell resolution Kolonelou C, Bräutigam L, Edwards S, ..., Andersson O, Teixeira AI - - (-) - 2023-12-23 2023-12-23
The impact of circulating protein levels identified by affinity proteomics on short-term, overall breast cancer risk. Grassmann F, Mälarstig A, Dahl L, ..., Schwenk JM, Czene K Br. J. Cancer - (-) - 2023-12-22 2023-12-22
Molecular profiling of high-level athlete skeletal muscle after acute endurance or resistance exercise - A systems biology approach. Reitzner SM, Emanuelsson EB, Arif M, ..., Chapman MA, Sundberg CJ Mol Metab 79 (-) 101857 2023-12-21 2023-12-21
Expression of influenza A virus glycan receptor candidates in mallard, chicken, and tufted duck. Nilsson J, Eriksson P, Naguib MM, ..., Larson G, Ellström P Glycobiology - (-) - 2023-12-21 2023-12-21
Impact of the gut microbiome on immunological responses to COVID-19 vaccination in healthy controls and people living with HIV. Ray S, Narayanan A, Vesterbacka J, ..., Sönnerborg A, Nowak P NPJ Biofilms Microbiomes 9 (1) 104 2023-12-20 2023-12-20
Effects of environmental translocation and host characteristics on skin microbiomes of sun-basking fish. Berggren H, Nordahl O, Yıldırım Y, ..., Tibblin P, Forsman A Proc. Biol. Sci. 290 (2013) 20231608 2023-12-20 2023-12-20
Rapid Metabolic Profiling of 1 μL Crude Cerebrospinal Fluid by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging Can Differentiate De Novo Parkinson's Disease. Vallianatou T, Nilsson A, Bjärterot P, ..., Svenningsson P, Andrén PE Anal. Chem. 95 (50) 18352-18360 2023-12-19 2023-12-07
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells Brismar H, Senftleben M, Bajor A, Hirata E, Abrahamsson S - - (-) - 2023-12-19 2023-12-19
Blue-shift photoconversion of near-infrared fluorescent proteins for labeling and tracking in living cells and organisms. Pennacchietti F, Alvelid J, Morales RA, ..., Verkhusha VV, Testa I Nat Commun 14 (1) 8402 2023-12-19 2023-12-19
Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification. Hafstað V, Häkkinen J, Larsson M, ..., Vallon-Christersson J, Persson H BMC Genomics 24 (1) 783 2023-12-18 2023-12-18
Dissecting the genetic landscape of GPCR signaling through phenotypic profiling in C. elegans. Pu L, Wang J, Lu Q, ..., Henriksson J, Chen C Nat Commun 14 (1) 8410 2023-12-18 2023-12-18
Using guaiacol as a capping agent in the hydrothermal depolymerisation of kraft lignin Ahlbom A, Maschietti M, Nielsen R, Hasani M, Theliander H - 38 (4) 619-631 2023-12-15 2023-09-26
Short- and long-term effects of radiation exposure at low dose and low dose rate in normal human VH10 fibroblasts. Akuwudike P, López-Riego M, Marczyk M, ..., Wojcik A, Lundholm L Front Public Health 11 (-) 1297942 2023-12-15 2023-12-15
Influenza-A mediated pre-existing immunity levels to SARS-CoV-2 could predict early COVID-19 outbreak dynamics. Almazán NM, Rahbar A, Carlsson M, ..., Sörensen B, Söderberg-Nauclér C iScience 26 (12) 108441 2023-12-15 2023-11-14
Effect of anode material and dispersal limitation on the performance and biofilm community in microbial electrolysis cells. Abadikhah M, Liu M, Persson F, ..., Sun J, Modin O Biofilm 6 (-) 100161 2023-12-15 2023-10-10
Balanced chromosomal rearrangements implicate YIPF5 and SPATC1L in non-obstructive oligoasthenozoospermia and oligozoospermia and of a derivative chromosome 22 in recurrent miscarriage. David D, Fino J, Oliveira R, Dória S, Morton CC Gene 887 (-) 147737 2023-12-15 2023-08-23
Csu pili dependent biofilm formation and virulence of Acinetobacter baumannii. Ahmad I, Nadeem A, Mushtaq F, ..., Wai SN, Uhlin BE NPJ Biofilms Microbiomes 9 (1) 101 2023-12-14 2023-12-14
A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements. Arnqvist G, Westerberg I, Galbraith J, ..., Ewels P, Suh A G3 (Bethesda) - (-) - 2023-12-13 2023-12-13
Genes with epigenetic alterations in human pancreatic islets impact mitochondrial function, insulin secretion, and type 2 diabetes. Rönn T, Ofori JK, Perfilyev A, ..., Bacos K, Ling C Nat Commun 14 (1) 8040 2023-12-12 2023-12-12
CENP-A and CENP-B collaborate to create an open centromeric chromatin state. Nagpal H, Ali-Ahmad A, Hirano Y, ..., Sekulić N, Fierz B Nat Commun 14 (1) 8227 2023-12-12 2023-12-12
The formation of the Indo-Pacific montane avifauna. Reeve AH, Kennedy JD, Pujolar JM, ..., Nylander JAA, Jønsson KA Nat Commun 14 (1) 8215 2023-12-11 2023-12-11
Screening for Circulating Inflammatory Proteins Does Not Reveal Plasma Biomarkers of Constant Tinnitus. Cederroth CR, Hong MG, Freydin MB, ..., Bulla J, Williams FMK J Assoc Res Otolaryngol - (-) - 2023-12-11 2023-12-11
Haplotype-resolved genome of heterozygous African cassava cultivar TMEB117 (Manihot esculenta). Landi M, Shah T, Falquet L, ..., Bongcam-Rudloff E, Gisel A Sci Data 10 (1) 887 2023-12-09 2023-12-09
The functional and molecular impact of triamcinolone acetonide on primary human bone marrow mesenchymal stem cells. Kumlin M, Ungerstedt J, Cai H, ..., Felländer-Tsai L, Qian H Sci Rep 13 (1) 21787 2023-12-08 2023-12-08
Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics. Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J Science 382 (6675) eadf8486 2023-12-08 2023-12-08
Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse. Kurt Z, Cheng J, Barrere-Cain R, ..., Blencowe M, Yang X Elife 12 (-) - 2023-12-07 2023-12-07
Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network. Xu X, Bhalla N, Ståhl P, Jaldén J BMC Bioinformatics 24 (1) 461 2023-12-07 2023-12-07
Gut bacteria at 6 months of age are associated with immune cell status in 1‐year‐old children Nilsen M, Nygaard UC, Brodin P, ..., Vettukattil R, Rudi K Scand J Immunol - (-) - 2023-12-07 2023-12-07
Multi-Modal Mass Spectrometry Identifies a Conserved Protective Epitope inS. pyogenesStreptolysin O Tang D, Gueto-Tettay C, Hjortswang E, ..., Malmström L, Malmström J - - (-) - 2023-12-02 2023-12-02
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows. Bouyssié D, Altıner P, Capella-Gutierrez S, ..., Winkelhardt D, Schwämmle V J. Proteome Res. - (-) - 2023-12-01 2023-12-01
Meta-Analyses of Genome-Wide Association Studies for Postpartum Depression. Guintivano J, Byrne EM, Kiewa J, ..., Meltzer-Brody S, Sullivan P Am J Psychiatry 180 (12) 884-895 2023-12-01 2023-10-18
Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation. Jensen A, Swift F, de Vries D, ..., Roos C, Guschanski K Mol. Biol. Evol. 40 (12) - 2023-12-01 2023-11-21
Three-dimensional reconstruction of interstitial extracellular vesicles in human liver as determined by electron tomography. Olofsson Bagge R, Berndtsson J, Urzì O, ..., Micaroni M, Crescitelli R J Extracell Vesicles 12 (12) e12380 2023-12-00 2023-11-27
The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15. Ozden B, Kryshtafovych A, Karaca E Proteins 91 (12) 1636-1657 2023-12-00 2023-10-20
Tertiary structure assessment at CASP15. Simpkin AJ, Mesdaghi S, Sánchez Rodríguez F, ..., Keegan RM, Rigden DJ Proteins 91 (12) 1616-1635 2023-12-00 2023-09-25
Patterns of phylogenetic diversification in the Dollarbird (Eurystomus orientalis) and Azure Roller (Eurystomus azureus) complex. Johansson US, Irestedt M, Ericson PGP Mol. Phylogenet. Evol. 189 (-) 107909 2023-12-00 2023-08-22
Mitochondrial membrane potential acts as a retrograde signal to regulate cell cycle progression. Gorospe CM, Carvalho G, Herrera Curbelo A, ..., Niedźwiecka K, Wanrooij PH Life Sci. Alliance 6 (12) - 2023-12-00 2023-09-11
Lipid- and substrate-induced conformational and dynamic changes in a glycosyltransferase involved in E. coli LPS synthesis revealed by 19F and 31P NMR. Patrick J, Pettersson P, Mäler L Biochimica et Biophysica Acta (BBA) - Biomembranes 1865 (8) 184209 2023-12-00 2023-08-07
In-depth immune profiling reveals advanced B- and T-cell differentiation to be associated with Th1-driven immune dysregulation in common variable immunodeficiency. Hultberg J, Blixt E, Göransson R, ..., Ernerudh J, Nyström S Clin. Immunol. 257 (-) 109816 2023-12-00 2023-10-31
Glycan Complexity and Heterogeneity of Glycoproteins in Somatic Extracts and Secretome of the Infective Stage of the Helminth Fasciola hepatica. De Marco Verissimo C, Cwiklinski K, Nilsson J, ..., Karlsson NG, Dalton JP Mol. Cell Proteomics 22 (12) 100684 2023-12-00 2023-11-21
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Hensen N, Bonometti L, Westerberg I, ..., Hiltunen Thorén M, Johannesson H Mol. Phylogenet. Evol. 189 (-) 107938 2023-12-00 2023-10-10
Fluorescence-activated multi-organelle mapping of subcellular plant hormone distribution. Skalický V, Antoniadi I, Pěnčík A, ..., Ljung K, Novák O Plant J. 116 (6) 1825-1841 2023-12-00 2023-09-08
Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development. Urbancsok J, Donev EN, Sivan P, ..., Street NR, Mellerowicz EJ New Phytol. 240 (6) 2312-2334 2023-12-00 2023-10-19
Defective Uterine Spiral Artery Remodeling and Placental Senescence in a Pregnant Rat Model of Polycystic Ovary Syndrome. Hu M, Zhang Y, Zhang X, ..., Shao LR, Billig H Am. J. Pathol. 193 (12) 1916-1935 2023-12-00 2023-09-07
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Genetics of HPA-axis, depression and suicidality. Wasserman D, Wasserman J, Sokolowski M Eur. Psychiatry 25 (5) 278-280 2010-06-00 2010-05-07
Genetic analysis of metabolic traits in an intercross between body weight-selected chicken lines. Ek W, Strömstedt L, Wahlberg P, ..., Andersson L, Carlborg O Physiol. Genomics 42 (1) 20-22 2010-06-00 2010-03-25
Antibody-based proteomics for discovery and exploration of proteins expressed in pancreatic islets. Lindskog C, Asplund A, Engkvist M, ..., Korsgren O, Ponten F Discov Med 9 (49) 565-578 2010-06-00 2010-07-01
Alpha terpineol: a potential anticancer agent which acts through suppressing NF-kappaB signalling. Hassan SB, Gali-Muhtasib H, Göransson H, Larsson R Anticancer Res. 30 (6) 1911-1919 2010-06-00 2010-07-24
A variant near the interleukin-6 gene is associated with fat mass in Caucasian men. Andersson N, Strandberg L, Nilsson S, ..., Jansson JO, Osteoporotic Fractures in Men MrOS Research Group Int J Obes (Lond) 34 (6) 1011-1019 2010-06-00 2010-02-17
Molecular make-up of the glomerular filtration barrier. Patrakka J, Tryggvason K Biochem. Biophys. Res. Commun. 396 (1) 164-169 2010-05-21 2010-05-25
Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk. Reynolds CA, Hong MG, Eriksson UK, ..., Pedersen NL, Prince JA Hum. Mol. Genet. 19 (10) 2068-2078 2010-05-15 2010-02-20
Adipose tissue pathways involved in weight loss of cancer cachexia. Dahlman I, Mejhert N, Linder K, ..., Rydén M, Arner P Br. J. Cancer 102 (10) 1541-1548 2010-05-11 2010-04-22
Genetic risk factors in lupus nephritis and IgA nephropathy--no support of an overlap. Vuong MT, Gunnarsson I, Lundberg S, ..., Jacobson SH, Padyukov L PLoS ONE 5 (5) e10559 2010-05-10 2010-05-10
Chd1 remodelers maintain open chromatin and regulate the epigenetics of differentiation. Persson J, Ekwall K Exp. Cell Res. 316 (8) 1316-1323 2010-05-01 2010-03-10
Variation in STAT4 is associated with systemic lupus erythematosus in a Finnish family cohort. Hellquist A, Sandling JK, Zucchelli M, ..., Syvänen AC, Kere J Ann. Rheum. Dis. 69 (5) 883-886 2010-05-00 2009-09-01
The impact of RNA standardization and heterogeneous gene expression on the results of cDNA array of human breast carcinoma. Khoshnoud R, He Q, Sylván M, ..., Rutqvist L, Skog S Int. J. Mol. Med. 25 (5) 735-741 2010-05-00 2010-04-08
Mapping of the fibroblast growth factors in human white adipose tissue. Mejhert N, Galitzky J, Pettersson AT, ..., Arner P, Rydén M J. Clin. Endocrinol. Metab. 95 (5) 2451-2457 2010-05-00 2010-03-17
Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia. Deneberg S, Grövdal M, Karimi M, ..., Hellström-Lindberg E, Lehmann S Leukemia 24 (5) 932-941 2010-05-00 2010-03-20
Detailed physiologic characterization reveals diverse mechanisms for novel genetic Loci regulating glucose and insulin metabolism in humans. Ingelsson E, Langenberg C, Hivert MF, ..., Florez JC, MAGIC investigators Diabetes 59 (5) 1266-1275 2010-05-00 2010-02-27
Abundance and expression of enantioselective rdpA and sdpA dioxygenase genes during degradation of the racemic herbicide (R,S)-2-(2,4-dichlorophenoxy)propionate in soil. Paulin MM, Nicolaisen MH, Sørensen J Appl. Environ. Microbiol. 76 (9) 2873-2883 2010-05-00 2010-03-23
A STAT4 risk allele is associated with ischaemic cerebrovascular events and anti-phospholipid antibodies in systemic lupus erythematosus. Svenungsson E, Gustafsson J, Leonard D, ..., Syvänen AC, Rönnblom L Ann. Rheum. Dis. 69 (5) 834-840 2010-05-00 2009-09-19
A single fixation protocol for proteome-wide immunofluorescence localization studies. Stadler C, Skogs M, Brismar H, Uhlén M, Lundberg E J Proteomics 73 (6) 1067-1078 2010-04-18 2009-11-10
Increased throughput by parallelization of library preparation for massive sequencing. Lundin S, Stranneheim H, Pettersson E, Klevebring D, Lundeberg J PLoS ONE 5 (4) e10029 2010-04-06 2010-04-06
Tumour-specific HMG-CoAR is an independent predictor of recurrence free survival in epithelial ovarian cancer. Brennan DJ, Brändstedt J, Rexhepaj E, ..., O'Herlihy C, Jirstrom K BMC Cancer 10 (-) 125 2010-04-01 2010-04-01
The recombination landscape of the zebra finch Taeniopygia guttata genome. Backström N, Forstmeier W, Schielzeth H, ..., Kempenaers B, Ellegren H Genome Res. 20 (4) 485-495 2010-04-00 2010-03-31
Reaction mechanism of 5,8-linoleate diol synthase, 10R-dioxygenase, and 8,11-hydroperoxide isomerase of Aspergillus clavatus. Jernerén F, Garscha U, Hoffmann I, Hamberg M, Oliw EH Biochim. Biophys. Acta 1801 (4) 503-507 2010-04-00 2010-01-05
Increased serum progesterone and estradiol correlate to increased COX-2 tissue expression in cervical intraepithelial neoplasia. Samir R, Tot T, Asplund A, Pekar G, Hellberg D Anticancer Res. 30 (4) 1217-1222 2010-04-00 2010-06-10
ELMOD2, a candidate gene for idiopathic pulmonary fibrosis, regulates antiviral responses. Pulkkinen V, Bruce S, Rintahaka J, ..., Matikainen S, Kere J FASEB J. 24 (4) 1167-1177 2010-04-00 2009-12-08
Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution. Völker M, Backström N, Skinner BM, ..., Ellegren H, Griffin DK Genome Res. 20 (4) 503-511 2010-04-00 2010-03-31
Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium. Smith NL, Chen MH, Dehghan A, ..., Tang W, O'Donnell CJ Circulation 121 (12) 1382-1392 2010-03-30 2010-03-17
Whole-genome resequencing reveals loci under selection during chicken domestication. Rubin C, Zody MC, Eriksson J, ..., Lindblad-Toh K, Andersson L Nature 464 (7288) 587-591 2010-03-25 2010-03-12
In-depth transcriptome analysis reveals novel TARs and prevalent antisense transcription in human cell lines. Klevebring D, Bjursell M, Emanuelsson O, Lundeberg J PLoS ONE 5 (3) e9762 2010-03-25 2010-03-25
Genome-wide characterisation of the Gcn5 histone acetyltransferase in budding yeast during stress adaptation reveals evolutionarily conserved and diverged roles. Xue-Franzén Y, Johnsson A, Brodin D, ..., Bürglin TR, Wright AP BMC Genomics 11 (-) 200 2010-03-25 2010-03-25
Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. Jakobsson HE, Jernberg C, Andersson AF, ..., Jansson JK, Engstrand L PLoS ONE 5 (3) e9836 2010-03-24 2010-03-24
Sustained inflammation due to nuclear factor-kappa B activation in irradiated human arteries. Halle M, Gabrielsen A, Paulsson-Berne G, ..., Farnebo F, Tornvall P J. Am. Coll. Cardiol. 55 (12) 1227-1236 2010-03-23 2010-03-20
Investigation of gene dosage imbalances in patients with Noonan syndrome using multiplex ligation-dependent probe amplification analysis. Nyström AM, Ekvall S, Thuresson AC, ..., Annerén G, Bondeson ML Eur J Med Genet 53 (3) 117-121 2010-03-17 2010-03-17
Global and unbiased detection of splice junctions from RNA-seq data. Ameur A, Wetterbom A, Feuk L, Gyllensten U Genome Biol. 11 (3) R34 2010-03-17 2010-03-17
The sexually antagonistic genes of Drosophila melanogaster. Innocenti P, Morrow EH PLoS Biol. 8 (3) e1000335 2010-03-16 2010-03-16
The tryptophan hydroxylase 1 (TPH1) gene, schizophrenia susceptibility, and suicidal behavior: a multi-centre case-control study and meta-analysis. Saetre P, Lundmark P, Wang A, ..., Terenius L, Jönsson EG Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (2) 387-396 2010-03-05 2009-06-16
Association between methylenetetrahydrofolate reductase (MTHFR) C677T polymorphism and age of onset in schizophrenia. Vares M, Saetre P, Deng H, ..., Terenius L, Jönsson EG Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (2) 610-618 2010-03-05 2009-09-12
The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells. Paavilainen L, Edvinsson A, Asplund A, ..., Pontén F, Wester K J. Histochem. Cytochem. 58 (3) 237-246 2010-03-00 2009-11-11
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Künstner A, Wolf JB, Backström N, ..., Warren WC, Ellegren H Mol. Ecol. 19 Suppl 1 (Suppl 1) 266-276 2010-03-00 2010-04-02
Appearance of Cxcl10-expressing cell clusters is common for traumatic brain injury and neurodegenerative disorders. Israelsson C, Bengtsson H, Lobell A, ..., Hillered L, Ebendal T Eur. J. Neurosci. 31 (5) 852-863 2010-03-00 2010-04-09
Molecular profiling using tissue microarrays as a tool to identify predictive biomarkers in laryngeal cancer treated with radiotherapy. Holgersson G, Ekman S, Reizenstein J, ..., Hellström K, Bergström S Cancer Genomics Proteomics 7 (1) 1-7 2010-02-26 2010-02-26
Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing. Sandberg J, Neiman M, Ahmadian A, Lundeberg J BMC Genomics 11 (-) 140 2010-02-26 2010-02-26
High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus. Berlin S, Lagercrantz U, von Arnold S, Ost T, Rönnberg-Wästljung AC BMC Genomics 11 (-) 129 2010-02-23 2010-02-23
Coffee consumption and CYP1A2 genotype in relation to bone mineral density of the proximal femur in elderly men and women: a cohort study. Hallström H, Melhus H, Glynn A, ..., Syvänen AC, Michaëlsson K Nutr Metab (Lond) 7 (-) 12 2010-02-22 2010-02-22
DNA methylation for subtype classification and prediction of treatment outcome in patients with childhood acute lymphoblastic leukemia. Milani L, Lundmark A, Kiialainen A, ..., Lönnerholm G, Syvänen AC Blood 115 (6) 1214-1225 2010-02-11 2009-11-25
SUMOylation mediates the nuclear translocation and signaling of the IGF-1 receptor. Sehat B, Tofigh A, Lin Y, ..., Lagergren J, Larsson O Sci Signal 3 (108) ra10 2010-02-09 2010-02-09
Sequence variation in SORL1 and dementia risk in Swedes. Reynolds CA, Hong MG, Eriksson UK, ..., Bennet AM, Prince JA Neurogenetics 11 (1) 139-142 2010-02-00 2009-08-05
Sensitive plasma protein analysis by microparticle-based proximity ligation assays. Darmanis S, Nong RY, Hammond M, ..., Landegren U, Kamali-Moghaddam M Mol. Cell Proteomics 9 (2) 327-335 2010-02-00 2009-12-04
Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Lantermann AB, Straub T, Strålfors A, ..., Ekwall K, Korber P Nat. Struct. Mol. Biol. 17 (2) 251-257 2010-02-00 2010-01-31
New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk. Dupuis J, Langenberg C, Prokopenko I, ..., Florez JC, Barroso I Nat. Genet. 42 (2) 105-116 2010-02-00 2010-01-19
Infection of mast cells with live streptococci causes a toll-like receptor 2- and cell-cell contact-dependent cytokine and chemokine response. Rönnberg E, Guss B, Pejler G Infect. Immun. 78 (2) 854-864 2010-02-00 2009-11-26
Global gene expression analysis of rodent motor neurons following spinal cord injury associates molecular mechanisms with development of postinjury spasticity. Wienecke J, Westerdahl AC, Hultborn H, Kiehn O, Ryge J J. Neurophysiol. 103 (2) 761-778 2010-02-00 2009-11-27
Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge. Saxena R, Hivert MF, Langenberg C, ..., Wareham NJ, Watanabe RM Nat. Genet. 42 (2) 142-148 2010-02-00 2010-01-19
Genetic variants and disease-associated factors contribute to enhanced interferon regulatory factor 5 expression in blood cells of patients with systemic lupus erythematosus. Feng D, Stone RC, Eloranta ML, ..., Rönnblom L, Barnes BJ Arthritis Rheum. 62 (2) 562-573 2010-02-00 2010-01-30
Connective tissue growth factor is expressed in malignant cells of Hodgkin lymphoma but not in other mature B-cell lymphomas. Birgersdotter A, Baumforth KR, Wei W, ..., Porwit A, Ernberg I Am. J. Clin. Pathol. 133 (2) 271-280 2010-02-00 2010-01-23
Comparative protein profiling of serum and plasma using an antibody suspension bead array approach. Schwenk JM, Igel U, Kato BS, ..., Uhlén M, Nilsson P Proteomics 10 (3) 532-540 2010-02-00 2009-12-03
Coexisting NRAS and BRAF mutations in primary familial melanomas with specific CDKN2A germline alterations. Jovanovic B, Egyhazi S, Eskandarpour M, ..., Hayward NK, Hansson J J. Invest. Dermatol. 130 (2) 618-620 2010-02-00 2009-09-18
Genetic and biochemical studies of SNPs of the mitochondrial A beta-degrading protease, hPreP. Pinho CM, Björk BF, Alikhani N, ..., Glaser E, Graff C Neurosci. Lett. 469 (2) 204-208 2010-01-22 2009-12-08
Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia. Kanduri M, Cahill N, Göransson H, ..., Isaksson A, Rosenquist R Blood 115 (2) 296-305 2010-01-14 2009-11-10
Association study of PDE4B gene variants in Scandinavian schizophrenia and bipolar disorder multicenter case-control samples. Kähler AK, Otnaess MK, Wirgenes KV, ..., Andreassen OA, Djurovic S Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (1) 86-96 2010-01-05 2009-04-08
A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins. Ensterö M, Akerborg O, Lundin D, ..., Ohman M, Lagergren J BMC Bioinformatics 11 (-) 6 2010-01-04 2010-01-04
The 2009 Nobel conference on the role of genetics in promoting suicide prevention and the mental health of the population. Wasserman D, Terenius L, Wasserman J, Sokolowski M Mol. Psychiatry 15 (1) 12-17 2010-01-00 2009-12-24
Large but not small copy-number alterations correlate to high-risk genomic aberrations and survival in chronic lymphocytic leukemia: a high-resolution genomic screening of newly diagnosed patients. Gunnarsson R, Isaksson A, Mansouri M, ..., Juliusson G, Rosenquist R Leukemia 24 (1) 211-215 2010-01-00 2009-09-11
Characterization of the cytotoxic properties of the benzimidazole fungicides, benomyl and carbendazim, in human tumour cell lines and primary cultures of patient tumour cells. Laryea D, Gullbo J, Isaksson A, Larsson R, Nygren P Anticancer Drugs 21 (1) 33-42 2010-01-00 2009-09-30
Association of polymorphisms in the SLIT2 axonal guidance gene with anger in suicide attempters. Sokolowski M, Wasserman J, Wasserman D Mol. Psychiatry 15 (1) 10-11 2010-01-00 2009-12-24
Tissue-Specific Protein Expression in Human Cells, Tissues and Organs Marcus G, Oksvold P, Pontén F, Uhlén M JPB 03 (10) - 2010-00-00 2010-00-00

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