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Bienko M
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Family name
Bienko
Given name
Magda
Initials
M
ORCID
ORCID
0000-0002-6499-9082
Affiliations
Science for Life Laboratory, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden.
10 publications
PubMed
DOI
Crossref
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.
Wernersson E, Gelali E,
Girelli G
, ...,
Crosetto N
,
Bienko M
Nat. Methods
-
(-) - [2024-06-06; online 2024-06-06]
Integrated Microscopy Technologies Stockholm [Collaborative]
Spatial Proteomics [Service]
PubMed
DOI
Crossref
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue.
Zhang N,
Harbers L
,
Simonetti M
, ...,
Bienko M
,
Crosetto N
Nat Commun
15
(1) 3475 [2024-04-24; online 2024-04-24]
NGI Short read [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.
Chen JP
,
Diekmann C
,
Wu H
, ...,
Bienko M
,
Crosetto N
Nat Commun
15
(1) 1768 [2024-02-27; online 2024-02-27]
NGI Short read [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis.
Mastropasqua F
,
Oksanen M
, Soldini C, ...,
Bölte S
,
Tammimies K
Biol Open
12
(10) - [2023-10-15; online 2023-10-10]
Bioinformatics Support and Infrastructure [Service]
Bioinformatics Support for Computational Resources [Service]
Bioinformatics Support, Infrastructure and Training [Service]
PubMed
DOI
Crossref
FRET-FISH probes chromatin compaction at individual genomic loci in single cells.
Mota A
,
Berezicki S
,
Wernersson E
, ...,
Crosetto N
,
Bienko M
Nat Commun
13
(1) 6680 [2022-11-05; online 2022-11-05]
Spatial Proteomics [Collaborative]
PubMed
DOI
Crossref
COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance.
Simonetti M
,
Zhang N
,
Harbers L
, ...,
Ghisetti V
,
Crosetto N
Nat Commun
12
(1) 3903 [2021-06-23; online 2021-06-23]
Bioinformatics Support for Computational Resources [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.
Tarbier M
, Mackowiak SD,
Frade J
, ..., Gallant CJ,
Friedländer MR
Nat Commun
11
(1) 5445 [2020-10-28; online 2020-10-28]
Bioinformatics Support for Computational Resources [Service]
Eukaryotic Single Cell Genomics (ESCG) [Service]
PubMed
DOI
Crossref
GPSeq reveals the radial organization of chromatin in the cell nucleus.
Girelli G
, Custodio J, Kallas T, ...,
Crosetto N
,
Bienko M
Nat. Biotechnol.
38
(10) 1184-1193 [2020-10-00; online 2020-05-25]
Integrated Microscopy Technologies Stockholm [Service]
PubMed
DOI
Crossref
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Asp M
,
Giacomello S
, Larsson L, ..., Sylvén C,
Lundeberg J
Cell
179
(7) 1647-1660.e19 [2019-12-12; online 2019-12-14]
Advanced FISH Technologies
Bioinformatics Long-term Support WABI [Collaborative]
Bioinformatics Support for Computational Resources [Service]
Bioinformatics Support, Infrastructure and Training [Collaborative]
Eukaryotic Single Cell Genomics (ESCG) [Service]
In Situ Sequencing (ISS) [Technology development]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.
Wu C, Simonetti M, Rossell C, ..., Crosetto N,
Nilsson M
Commun Biol
1
(-) 209 [2018-11-28; online 2018-11-28]
Advanced FISH Technologies [Technology development]
In Situ Sequencing (ISS) [Technology development]
SciLifeLab Data Centre
Publications
9.5.0