NGI Uppsala (Uppsala Genome Center)

SciLifeLab National facility since 2013.

393 publications

Year 2019

PubMed DOI Crossref
Discovery of Novel Sequences in 1,000 Swedish Genomes.
Eisfeldt J, Mårtensson G, Ameur A, Nilsson D, Lindstrand A
Mol. Biol. Evol. - (-) - [2019-09-24; online 2019-09-24]
NGI Uppsala (Uppsala Genome Center) [Collaborative]
PubMed DOI Crossref
The TGFB2-AS1 lncRNA Regulates TGF-β Signaling by Modulating Corepressor Activity.
Papoutsoglou P, Tsubakihara Y, Caja L, ..., Heldin CH, Moustakas A
Cell Rep 28 (12) 3182-3198.e11 [2019-09-17; online 2019-09-19]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Combinations of Spok genes create multiple meiotic drivers in Podospora.
Vogan AA, Ament-Velásquez SL, Granger-Farbos A, ..., Saupe SJ, Johannesson H
pmc Dryad
Elife 8 (-) - [2019-07-26; online 2019-07-26]
NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Fam83F induces p53 stabilisation and promotes its activity.
Salama M, Benitez-Riquelme D, Elabd S, ..., Davidson G, Blattner C
Cell Death Differ. - (-) - [2019-01-28; online 2019-01-28]
NGI Uppsala (Uppsala Genome Center) [Service]

Year 2018

PubMed DOI Crossref
High similarity in the microbiota of cold-water sponges of the Genus
Cárdenas CA, González-Aravena M, Font A, ..., Malmberg M, Bongcam-Rudloff E
pmc
PeerJ 6 (-) e4935 [2018-06-07; online 2018-06-07]
Bioinformatics Compute and Storage [Service] NGI Uppsala (Uppsala Genome Center) [Service]
PubMed DOI Crossref
Molecular barcoding of viral vectors enables mapping and optimization of mRNAtrans-splicing
Davidsson M, Díaz-Fernández P, Torroba M, ..., Lundberg C, Björklund T
RNA 24 (5) 673-687 [2018-05-00; online 2018-01-31]
NGI Uppsala (Uppsala Genome Center) [Service]

Year 2017

PubMed DOI Crossref
Identification of NCAN as a candidate gene for developmental dyslexia
Einarsdottir E, Peyrard-Janvid M, Darki F, ..., Leinonen E, Kere J
Sci Rep 7 (1) - [2017-12-00; online 2017-08-24]
NGI Uppsala (Uppsala Genome Center) [Service]

Year 2016

Year 2015

PubMed DOI Crossref
Mutation in CEP63 co-segregating with developmental dyslexia in a Swedish family.
Einarsdottir E, Svensson I, Darki F, ..., Kere J, Matsson H
pmc
Hum. Genet. 134 (11-12) 1239-1248 [2015-11-00; online 2015-09-25]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Scaffolding of a bacterial genome using MinION nanopore sequencing.
Karlsson E, Lärkeryd A, Sjödin A, Forsman M, Stenberg P
pmc
Sci Rep 5 (-) 11996 [2015-07-07; online 2015-07-07]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
CGGBP1 mitigates cytosine methylation at repetitive DNA sequences.
Agarwal P, Collier P, Fritz MH, ..., Westermark B, Singh U
pmc
BMC Genomics 16 (-) 390 [2015-05-16; online 2015-05-16]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Fluctuating expression of microRNAs in adenovirus infected cells.
Zhao H, Chen M, Tellgren-Roth C, Pettersson U
Virology 478 (-) 99-111 [2015-04-00; online 2015-03-07]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Methylation levels of SLC23A2 and NCOR2 genes correlate with spinal muscular atrophy severity.
Zheleznyakova GY, Nilsson EK, Kiselev AV, ..., Baranov VS, Schiöth HB
pmc
PLoS ONE 10 (3) e0121964 [2015-03-30; online 2015-03-30]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Complete genome sequence of Borrelia afzelii K78 and comparative genome analysis.
Schüler W, Bunikis I, Weber-Lehman J, ..., Bergström S, Lundberg U
pmc
PLoS ONE 10 (3) e0120548 [2015-03-23; online 2015-03-23]
NGI Uppsala (Uppsala Genome Center)

Year 2014

PubMed DOI Crossref
Serotonin receptor gene (5HT-2A) polymorphism is associated with provoked vestibulodynia and comorbid symptoms of pain.
Heddini U, Bohm-Starke N, Grönbladh A, ..., Nilsson KW, Johannesson U
J Sex Med 11 (12) 3064-3071 [2014-12-00; online 2014-09-02]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Abolished InsP3R2 function inhibits sweat secretion in both humans and mice.
Klar J, Hisatsune C, Baig SM, ..., Mikoshiba K, Dahl N
pmc
J. Clin. Invest. 124 (11) 4773-4780 [2014-11-00; online 2014-10-21]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Sexual structures and recombination of the wheat rust fungus Puccinia striiformis on Berberis vulgaris.
Rodriguez-Algaba J, Walter S, Sørensen CK, Hovmøller MS, Justesen AF
Fungal Genet. Biol. 70 (-) 77-85 [2014-09-00; online 2014-07-22]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Splicing in the human brain.
Zaghlool A, Ameur A, Cavelier L, Feuk L
Int. Rev. Neurobiol. 116 (-) 95-125 [2014-08-31; online 2014-08-31]
NGI Uppsala (Uppsala Genome Center)
DOI Crossref
The Arthonialean challenge: Restructuring Arthoniaceae
Frisch A, Thor G, Ertz D, Grube M
Taxon 63 (4) 727-744 [2014-08-28; online 2014-08-28]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Distinct roles of Candida albicans-specific genes in host-pathogen interactions.
Wilson D, Mayer FL, Miramón P, ..., Jacobsen ID, Hube B
pmc
Eukaryotic Cell 13 (8) 977-989 [2014-08-00; online 2014-03-13]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Nucleosome regulatory dynamics in response to TGFβ.
Enroth S, Andersson R, Bysani M, ..., Komorowski J, Wadelius C
pmc
Nucleic Acids Res. 42 (11) 6921-6934 [2014-06-00; online 2014-04-29]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
ZBED6 modulates the transcription of myogenic genes in mouse myoblast cells.
Jiang L, Wallerman O, Younis S, ..., Andersson G, Andersson L
pmc GEO GEO SRA
PLoS ONE 9 (4) e94187 [2014-04-08; online 2014-04-08]
NGI Uppsala (Uppsala Genome Center)

Year 2013

PubMed DOI Crossref
Discovery and refinement of loci associated with lipid levels.
Global Lipids Genetics Consortium N, Willer CJ, Schmidt EM, ..., Ingelsson E, Abecasis GR
pmc mid
Nat. Genet. 45 (11) 1274-1283 [2013-11-00; online 2013-10-08]
NGI Uppsala (SNP&SEQ Technology Platform) NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
New viruses in veterinary medicine, detected by metagenomic approaches.
Belák S, Karlsson OE, Blomström AL, Berg M, Granberg F
Vet. Microbiol. 165 (1-2) 95-101 [2013-07-26; online 2013-02-23]
NGI Uppsala (Uppsala Genome Center)
DOI Crossref
Metagenomics sample preparation and sequencing.
Karlsson OE, Norling M, Bongcam-Rudloff E
EMBnet j. 19 (A) 55 [2013-04-08; online 2013-04-08]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
The genomic signature of dog domestication reveals adaptation to a starch-rich diet.
Axelsson E, Ratnakumar A, Arendt M, ..., Hedhammar A, Lindblad-Toh K
Nature 495 (7441) 360-364 [2013-03-21; online 2013-01-29]
NGI Uppsala (Uppsala Genome Center)
DOI Crossref
The genetic structure of the Lithuanian wolf population
Baltrūnaitė L, Balčiauskas L, Åkesson M
Open Life Sci 8 (5) - [2013-01-01; online 2013-01-01]
NGI Uppsala (Uppsala Genome Center)

Year 2012

PubMed DOI Crossref
Reclassification of the Candida haemulonii complex as Candida haemulonii (C. haemulonii group I), C. duobushaemulonii sp. nov. (C. haemulonii group II), and C. haemulonii var. vulnera var. nov.: three multiresistant human pathogenic yeasts.
Cendejas-Bueno E, Kolecka A, Alastruey-Izquierdo A, ..., Gómez-López A, Boekhout T
pmc GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK
J. Clin. Microbiol. 50 (11) 3641-3651 [2012-11-00; online 2012-09-07]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
GCH1-polymorphism and pain sensitivity among women with provoked vestibulodynia.
Heddini U, Bohm-Starke N, Grönbladh A, ..., Nilsson KW, Johannesson U
pmc
Mol Pain 8 (-) 68 [2012-09-12; online 2012-09-12]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Intractable epilepsy of infancy due to homozygous mutation in the EFHC1 gene.
Berger I, Dor T, Halvardson J, ..., Feuk L, Elpeleg O
Epilepsia 53 (8) 1436-1440 [2012-08-00; online 2012-06-14]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Unraveling assembly of stream biofilm communities.
Besemer K, Peter H, Logue JB, ..., Tranvik LJ, Battin TJ
pmc
ISME J 6 (8) 1459-1468 [2012-08-00; online 2012-01-13]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencing.
Mohammad F, Pandey GK, Mondal T, ..., Gyllensten U, Kanduri C
Development 139 (15) 2792-2803 [2012-08-00; online 2012-06-23]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
A-to-I editing of microRNAs in the mammalian brain increases during development.
Ekdahl Y, Farahani HS, Behm M, Lagergren J, Öhman M
pmc
Genome Res. 22 (8) 1477-1487 [2012-08-00; online 2012-05-31]
NGI Uppsala (Uppsala Genome Center)
PubMed
Polymorphisms in sh2b1 and spns1 loci are associated with triglyceride levels in a healthy population in northern Sweden.
Västermark Å, Jacobsson JA, Johansson Å, ..., Gyllensten U, Schiöth HB
J. Genet. 91 (2) 237-240 [2012-08-00; online 2012-09-04]
NGI Uppsala (Uppsala Genome Center)
DOI Crossref
Ecosystem effects of materials proposed for thin‑layer capping of contaminated sediments
Näslund J, Samuelsson G, Gunnarsson J, ..., Cornelissen G, Schaanning M
Mar. Ecol. Prog. Ser. 449 (-) 27-40 [2012-03-08; online 2012-03-08]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Mutations in CTC1, encoding conserved telomere maintenance component 1, cause Coats plus.
Anderson BH, Kasher PR, Mayer J, ..., Rice GI, Crow YJ
Nat. Genet. 44 (3) 338-342 [2012-01-22; online 2012-01-22]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Contribution of TMC6 and TMC8 (EVER1 and EVER2) variants to cervical cancer susceptibility.
Castro FA, Ivansson EL, Schmitt M, ..., Gyllensten UB, Pawlita M
pmc mid
Int. J. Cancer 130 (2) 349-355 [2012-01-15; online 2011-03-10]
NGI Uppsala (Uppsala Genome Center)

Year 2011

PubMed DOI Crossref
Abundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum.
Avesson L, Schumacher HT, Fechter P, ..., Hellman U, Söderbom F
RNA Biol 8 (6) 1094-1104 [2011-11-01; online 2011-09-24]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Variants in STAT5B associate with serum TC and LDL-C levels.
Kornfeld JW, Isaacs A, Vitart V, ..., Pramstaller PP, Hicks AA
J. Clin. Endocrinol. Metab. 96 (9) E1496-E1501 [2011-09-00; online 2011-07-15]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Ultra-deep sequencing of mouse mitochondrial DNA: mutational patterns and their origins.
Ameur A, Stewart JB, Freyer C, ..., Larsson N, Gyllensten U
pmc
PLoS Genet. 7 (3) e1002028 [2011-03-00; online 2011-03-24]
NGI Uppsala (Uppsala Genome Center)

Year 2010

PubMed DOI Crossref
Induction patterns of new CYP1 genes in environmentally exposed rainbow trout.
Jönsson ME, Gao K, Olsson JA, Goldstone JV, Brandt I
pmc mid
Aquat. Toxicol. 98 (4) 311-321 [2010-07-15; online 2010-04-08]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Different SNP combinations in the GCH1 gene and use of labor analgesia.
Dabo F, Grönbladh A, Nyberg F, Sundström-Poromaa I, Akerud H
pmc
Mol Pain 6 (-) 41 [2010-07-15; online 2010-07-15]
NGI Uppsala (Uppsala Genome Center)