Appl. Environ. Microbiol.

ISSN	1098-5336
ISSN-L	0099-2240
IUID	d5a5202d410f41b88cb63fae1f25bb0a
Modified	2020-11-27T13:14:01.400Z
Created	2017-05-09T09:12:23.629Z

Year 2025

PubMed DOI Crossref

The evaluation of biogenic silica in brackish and freshwater strains reveals links between phylogeny and silica accumulation in picocyanobacteria.

Aguilera A, Lundin D, Charalampous E, ..., Farnelid H, Pinhassi J

Appl. Environ. Microbiol. 91 (4) e0252724 [2025-04-23; online 2025-03-27]

NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Temporal dynamics of airborne fungi in Swedish forest nurseries.

Larsson R, Menkis A, Olson Å

Appl. Environ. Microbiol. 91 (2) e0130624 [2025-02-19; online 2025-01-16]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

Year 2024

PubMed DOI Crossref

Bifidobacterium longum subsp. longum BG-L47 boosts growth and activity of Limosilactobacillus reuteri DSM 17938 and its extracellular membrane vesicles.

Ermann Lundberg L, Pallabi Mishra P, Liu P, ..., Linninge C, Roos S

Appl. Environ. Microbiol. 90 (7) e0024724 [2024-07-24; online 2024-06-18]

Integrated Microscopy Technologies Gothenburg [Service]

PubMed DOI Crossref

Saccharomyces cerevisiae strains performing similarly during fermentation of lignocellulosic hydrolysates show pronounced differences in transcriptional stress responses.

Cámara E, Mormino M, Siewers V, Nygård Y

Appl. Environ. Microbiol. 90 (5) e0233023 [2024-05-21; online 2024-04-08]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Year 2023

PubMed DOI Crossref

Exchange of Carbapenem-Resistant Escherichia coli Sequence Type 38 Intercontinentally and among Wild Bird, Human, and Environmental Niches.

Ahlstrom CA, Woksepp H, Sandegren L, Ramey AM, Bonnedahl J

Appl. Environ. Microbiol. - (-) e0031923 [2023-05-17; online 2023-05-17]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Novel Insights into the Molecular Mechanisms Underlying Robustness and Stability in Probiotic Bifidobacteria.

Schöpping M, Goel A, Jensen K, ..., Franzén CJ, Zeidan AA

Appl. Environ. Microbiol. 89 (3) e0008223 [2023-03-29; online 2023-02-21]

Chalmers Mass Spectrometry Infrastructure [Service]

Year 2022

PubMed DOI Crossref

Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea.

Piombo E, Vetukuri RR, Sundararajan P, ..., Karlsson M, Dubey M

Appl. Environ. Microbiol. 88 (13) e0064322 [2022-07-12; online 2022-06-13]

Bioinformatics Support for Computational Resources [Service]

Year 2021

PubMed DOI Crossref

Microbial Plankton Community Structure and Function Responses to Vitamin B12 and B1 Amendments in an Upwelling System.

Joglar V, Pontiller B, Martínez-García S, ..., Fernández E, Teira E

Appl. Environ. Microbiol. 87 (22) e0152521 [2021-10-28; online 2021-09-08]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2020

PubMed DOI Crossref

Variations among Viruses in Influent Water and Effluent Water at a Wastewater Plant over One Year as Assessed by Quantitative PCR and Metagenomics.

Wang H, Neyvaldt J, Enache L, ..., Bergstedt O, Norder H

Appl. Environ. Microbiol. 86 (24) - [2020-11-24; online 2020-11-24]

Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]

Year 2019

PubMed DOI Crossref

Yeast Volatomes Differentially Affect Larval Feeding in an Insect Herbivore.

Ljunggren J, Borrero-Echeverry F, Chakraborty A, ..., Witzgall P, Bengtsson M

Appl. Environ. Microbiol. 85 (21) - [2019-11-01; online 2019-10-16]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341.

Nilsson E, Li K, Fridlund J, ..., Pinhassi J, Holmfeldt K

Appl. Environ. Microbiol. 85 (18) - [2019-09-15; online 2019-08-29]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations.

Herlemann DPR, Markert S, Meeske C, ..., Jürgens K, Schweder T

Appl. Environ. Microbiol. 85 (15) - [2019-08-01; online 2019-07-18]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2018

PubMed DOI Crossref

Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilum T.

Christel S, Herold M, Bellenberg S, ..., Poetsch A, Dopson M

Appl. Environ. Microbiol. 84 (3) e02091-17 [2018-02-01; online 2018-01-17]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

Year 2017

PubMed DOI Crossref

Moderate Expression of SEC16 Increases Protein Secretion by Saccharomyces cerevisiae.

Bao J, Huang M, Petranovic D, Nielsen J

Appl. Environ. Microbiol. 83 (14) - [2017-07-15; online 2017-06-30]

Integrated Microscopy Technologies Gothenburg [Service]

PubMed DOI Crossref

Microbial Community Structure in a Serpentine-Hosted Abiotic Gas Seepage at the Chimaera Ophiolite, Turkey.

Neubeck A, Sun L, Müller B, ..., Broman C, Schnürer A

Appl. Environ. Microbiol. 83 (12) - [2017-06-15; online 2017-05-31]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Interactions of Freshwater Cyanobacteria with Bacterial Antagonists

Osman OA, Beier S, Grabherr M, Bertilsson S

Appl. Environ. Microbiol. 83 (7) e02634-16 [2017-04-01; online 2017-01-23]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Distinct Anaerobic Bacterial Consumers of Cellobiose-Derived Carbon in Boreal Fens with Different CO2/CH4 Production Ratios

Juottonen H, Eiler A, Biasi C, ..., Yrjälä K, Fritze H

Appl. Environ. Microbiol. 83 (4) e02533-16 [2017-02-15; online 2016-12-02]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Year 2015

PubMed DOI Crossref

An Exopolysaccharide-Deficient Mutant of Lactobacillus rhamnosus GG Efficiently Displays a Protective Llama Antibody Fragment against Rotavirus on Its Surface.

Álvarez B, Krogh-Andersen K, Tellgren-Roth C, ..., Hammarström L, Marcotte H

Appl. Environ. Microbiol. 81 (17) 5784-5793 [2015-09-01; online 2015-06-21]

NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure

PubMed DOI Crossref

Oseltamivir-resistant influenza A (H1N1) virus strain with an H274Y mutation in neuraminidase persists without drug pressure in infected mallards.

Gillman A, Muradrasoli S, Söderström H, ..., Olsen B, Järhult JD

Appl. Environ. Microbiol. 81 (7) 2378-2383 [2015-04-00; online 2015-01-27]

NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure

Year 2014

PubMed DOI Crossref

DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies.

Hugerth LW, Wefer HA, Lundin S, ..., Engstrand L, Andersson AF

Appl. Environ. Microbiol. 80 (16) 5116-5123 [2014-08-00; online 2014-06-15]

NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

Year 2013

PubMed DOI Crossref

Using transcriptomics to improve butanol tolerance of Synechocystis sp. strain PCC 6803.

Anfelt J, Hallström B, Nielsen J, Uhlén M, Hudson EP

Appl. Environ. Microbiol. 79 (23) 7419-7427 [2013-12-00; online 2013-09-24]

NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

PubMed DOI Crossref

Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum.

Andersson KM, Meerupati T, Levander F, ..., Ahrén D, Tunlid A

Appl. Environ. Microbiol. 79 (16) 4993-5004 [2013-08-00; online 2013-06-19]

Bioinformatics (NBIS) Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

Year 2010

PubMed DOI Crossref

Abundance and expression of enantioselective rdpA and sdpA dioxygenase genes during degradation of the racemic herbicide (R,S)-2-(2,4-dichlorophenoxy)propionate in soil.

Paulin MM, Nicolaisen MH, Sørensen J

Appl. Environ. Microbiol. 76 (9) 2873-2883 [2010-05-00; online 2010-03-23]

NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure