Publications 2025

Title Authors Journal Published Online
Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer. Sur I, Zhao W, Zhang J, ..., de la Roche M, Taipale J Life Sci. Alliance 8 (6) - 2025-06-00 2025-04-03
Frequent Hybridisation Between Parapatric Lekking Bird-of-Paradise Species. Thörn F, Müller IA, Soares AER, ..., Blom MPK, Irestedt M Mol. Ecol. 34 (11) e17780 2025-06-00 2025-04-29
Diffuse large B cell lymphoma in rheumatoid arthritis patients is associated with elevated B-cell driving factors including CXCL13. Euler N, Hellbacher E, Klint EA, ..., Grönwall C, AUTO-LYMPHOMA study group Clin. Immunol. 275 (-) 110476 2025-06-00 2025-03-19
Diel Bacterioplankton Community Dynamics Under Contrasting Light Regimes. Papadopoulou S, Linkhorst A, Balmonte JP, ..., Bertilsson S, Székely AJ Environ Microbiol Rep 17 (3) e70099 2025-06-00 2025-05-09
Plasma membrane labelling efficiency, internalization and partitioning of functionalized fluorescent lipids as a function of lipid structure Sezgin E - - (-) - 2025-05-13 2025-05-13
Microbial transfer through fecal strings on eggs affects leaf beetle microbiome dynamics. An Y, Garcia SL, Hambäck PA mSystems - (-) e0172324 2025-05-13 2025-05-13
CpG island methylator phenotype classification improves risk assessment in pediatric T-cell acute lymphoblastic leukemia. Schäfer Hackenhaar F, Refhagen N, Hagleitner M, ..., Hultdin M, Degerman S Blood 145 (19) 2161-2178 2025-05-08 2025-01-22
Gut microbiota mediates SREBP-1c-driven hepatic lipogenesis and steatosis in response to zero-fat high-sucrose diet. Bergentall M, Tremaroli V, Sun C, ..., Nieuwdorp M, Bäckhed F Mol Metab 97 (-) 102162 2025-05-07 2025-05-07
Green Listed v2.0: A Web Application for Streamlined Design of Custom CRISPR Screens. Henkel E, Li Z, Uvehag D, ..., Henkel M, Wermeling F CRISPR J - (-) - 2025-05-07 2025-05-07
Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity. Xu Y, Lou D, Chen P, ..., Hu Y, Wang J Dev. Cell - (-) - 2025-05-06 2025-05-06
External validation of plasma CSF1 as a preoperative prognostic marker in patients with resectable intrahepatic cholangiocarcinoma. Akiki A, Jacobsson H, Nouairia G, ..., Taflin H, Jansson H Eur J Surg Oncol 51 (8) 110123 2025-05-04 2025-05-04
Museum Ecologies Fredengren C, Ewing A, Owman C, Holmstedt J Mus. Soc. 23 (1) - 2025-05-01 2025-05-01
High Content Imaging in Drug Discovery - - (-) - 2025-04-30 2025-04-30
Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis. Sreenivasan AP, Vaivade A, Noui Y, ..., Spjuth O, Kultima K NPJ Digit Med 8 (1) 224 2025-04-24 2025-04-24
Constraints to gene flow increase the risk of genome erosion in the Ngorongoro Crater lion population. Dussex N, Jansson I, van der Valk T, ..., E Mjingo E, Spong G Commun Biol 8 (1) 640 2025-04-21 2025-04-21
Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis. González-López A, Ge X, Larsson DSD, ..., Sanyal S, Selmer M Nat Commun 16 (1) 3693 2025-04-18 2025-04-18
Challenging the "Undruggable"─Targeting STAT3 but Identifying Potent TrkA-Targeted Inhibitors. Iliev P, McCutcheon C, Admas TH, ..., Frank DA, Page BDG J. Med. Chem. - (-) - 2025-04-17 2025-04-17
In vivo composition of the mitochondrial nucleoid in mice. García-Villegas R, Odenthal F, Giannoula Y, ..., Levander F, Larsson NG Biochimica et Biophysica Acta (BBA) - Molecular Cell Research - (-) 119955 2025-04-15 2025-04-15
Antibacterial compounds against non-growing and intracellular bacteria Kaldalu N, Bērziņš N, Berglund Fick S, ..., Hauryliuk V, Tenson T npj Antimicrob Resist 3 (1) - 2025-04-11 2025-04-11
A red fluorescent lifeact marker to study actin morphology in podocytes. Wiesner E, Binz-Lotter J, Tröder SE, ..., Wedlich-Söldner R, Hackl MJ Sci Rep 15 (1) 12386 2025-04-11 2025-04-11
Nuclear AGO2 supports influenza A virus replication through type-I interferon regulation. Huang H, Fong M, Nowak I, ..., Angeletti D, Sarshad AA Nucleic Acids Res. 53 (7) - 2025-04-10 2025-04-12
Dual GSK-3β/HDAC Inhibitors Enhance the Efficacy of Macrophages to Control Mycobacterium tuberculosis Infection. Kalsum S, Xu R, Akber M, ..., Zhou Y, Brighenti S Biomolecules 15 (4) 550 2025-04-09 2025-04-09
Design, Synthesis, and Biophysical Characterization of Pyridine Bis‐Quinazoline Derivatives as Selective G‐Quadruplex DNA Stabilizers Nath Das R, Chorell E Chem. Eur. J. 31 (21) - 2025-04-09 2025-03-05
Ectoderm barcoding reveals neural and cochlear compartmentalization. de Haan S, He J, Corbat AA, ..., Kelley MW, Andersson ER Science 388 (6742) 60-68 2025-04-04 2025-04-03
A Million Years of Mammoth Mitogenome Evolution. Chacón-Duque JC, Thomas Thorpe JA, Li W, ..., Heintzman PD, Dalén L Mol. Biol. Evol. 42 (4) - 2025-04-01 2025-04-09
The Development of Selective Chemical Probes for Serine Arginine Protein Kinase 3 Hanke D, McCutcheon C, Page BDG Chem Biol Drug Des 105 (4) - 2025-04-00 2025-04-03
A genome-wide association study of imaging-defined atherosclerosis. Gummesson A, Lundmark P, Chen QS, ..., Fall T, Gigante B Nat Commun 16 (1) 2266 2025-03-31 2025-03-31
Sex pheromone biosynthesis in the Oriental fruit moth Grapholita molesta involves Δ8 desaturation. Dam MI, Ding BJ, Brauburger K, ..., Heckel DG, Löfstedt C Insect Biochem. Mol. Biol. - (-) 104307 2025-03-30 2025-03-30
The DNA methylation landscape of primary triple-negative breast cancer. Aine M, Nacer DF, Arbajian E, ..., Borg Å, Staaf J Nat Commun 16 (1) 3041 2025-03-28 2025-03-28
Phylogeny of Palicoureeae (Rubiaceae) based on 353 low-copy nuclear genes - With particular focus on Hymenocoleus Robbr. Thilén L, Lachenaud O, Thureborn O, Razafimandimbison SG, Rydin C Mol. Phylogenet. Evol. - (-) 108338 2025-03-28 2025-03-28
Cell membranes sustain phospholipid imbalance via cholesterol asymmetry. Doktorova M, Symons JL, Zhang X, ..., Levental KR, Levental I Cell - (-) - 2025-03-26 2025-03-26
Blood-based biomarkers of Alzheimer's disease and incident dementia in the community. Grande G, Valletta M, Rizzuto D, ..., Fratiglioni L, Vetrano DL Nat. Med. - (-) - 2025-03-26 2025-03-26
Identification of a SNAI1 enhancer RNA that drives cancer cell plasticity. Fan C, Wang Q, Krijger PHL, ..., de Laat W, Ten Dijke P Nat Commun 16 (1) 2890 2025-03-25 2025-03-25
Neural ensembles that encode nocifensive mechanical and heat pain in mouse spinal cord. Zhang MD, Kupari J, Su J, ..., Lagerström MC, Ernfors P Nat. Neurosci. - (-) - 2025-03-24 2025-03-24
A large-scale sORF screen identifies putative microproteins involved in cancer cell fitness. Schlesinger D, Dirks C, Navarro C, ..., Martinez TF, Elsässer SJ iScience 28 (3) 111884 2025-03-21 2025-01-23
Intestinal estrogen receptor beta modulates the murine colon tumor immune microenvironment. Birgersson M, Holm M, Gallardo-Dodd CJ, ..., Archer A, Williams C Cancer Lett. - (-) 217661 2025-03-20 2025-03-20
Targeting TUBG1 in RB1‐negative tumors Lindström L, Zhou J, Villoutreix BO, ..., Olsson R, Alvarado‐Kristensson M The FASEB Journal 39 (5) - 2025-03-15 2025-02-28
Sox9 and nuclear factor I transcription factors regulate the timing of neurogenesis and ependymal maturation in dopamine progenitors. Lahti L, Volakakis N, Gillberg L, ..., Gronostajski R, Perlmann T Development 152 (6) - 2025-03-15 2025-03-26
Dietary patterns and blood-based biomarkers of Alzheimer's disease in cognitively intact older adults: Findings from a population-based study. Mrhar A, Carballo-Casla A, Grande G, ..., Calderón-Larrañaga A, Vetrano DL J Prev Alzheimers Dis - (-) 100124 2025-03-14 2025-03-14
Genetic liability for anxiety and treatment response to the monoamine stabilizer OSU6162 in alcohol dependence: a retrospective secondary analysis. Hong MG, Khemiri L, Guterstam J, ..., Jayaram-Lindström N, Melas PA Pharmacol Rep - (-) - 2025-03-12 2025-03-12
Historic manioc genomes illuminate maintenance of diversity under long-lived clonal cultivation. Kistler L, de Oliveira Freitas F, Gutaker RM, ..., Capriles JM, Allaby RG Science 387 (6738) eadq0018 2025-03-07 2025-03-07
Continuous map of early hematopoietic stem cell differentiation across human lifetime. Komic H, Schmachtel T, Simoes C, ..., Thorén FB, Rieger MA Nat Commun 16 (1) 2287 2025-03-07 2025-03-07
Antisense-mediated regulation of exon usage in the elastic spring region of Titin modulates sarcomere function. Celik S, Hyrefelt L, Czuba T, ..., Smith JG, Gidlöf O Cardiovasc. Res. - (-) - 2025-03-05 2025-03-05
Decreased levels and function of dendritic cells in blood and airways predict COVID-19 severity. Österberg B, Falck-Jones S, Vangeti S, ..., Färnert A, Smed-Sörensen A Clin Transl Immunology 14 (3) e70026 2025-03-03 2025-03-03
Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening. Vaivade A, Erngren I, Carlsson H, ..., Burman J, Kultima K Nat Commun 16 (1) 2014 2025-02-27 2025-02-27
Lithography-Free Water Stable Conductive Polymer Nanowires Hughes D, Mousa AH, Musumeci C, ..., Olsson R, Hjort M Nano Lett. 25 (8) 3059-3065 2025-02-26 2025-02-13
Duplexed CeTEAM drug biosensors reveal determinants of PARP inhibitor selectivity in cells. Pires MJ, Alam S, Lovric A, ..., Altun M, Valerie NCK J. Biol. Chem. - (-) 108361 2025-02-26 2025-02-26
Dissecting the properties of circulating IgG against streptococcal pathogens through a combined systems antigenomics-serology workflow Gomez Toledo A, Chowdhury S, Hjortswang E, ..., Rasmussen M, Malmström J Nat Commun 16 (1) - 2025-02-24 2025-02-24
Spatial mapping of DNA synthesis reveals dynamics and geometry of human replication nanostructures Hawgood M, Urién González B, Agostinho A, ..., Blom H, Lemmens B - - (-) - 2025-02-23 2025-02-23
Comprehensive Gene Expression Analysis in Papillary Thyroid Carcinoma Reveals a Transcriptional Profile Associated with Reduced Radioiodine Avidity. Condello V, Marchettini C, Ihre-Lundgren C, Nilsson JN, Juhlin CC Endocr. Pathol. 36 (1) 4 2025-02-21 2025-02-21
Toward target 2035: EUbOPEN - a public-private partnership to enable & unlock biology in the open. Tredup C, Ackloo S, Beck H, ..., Arrowsmith CH, Knapp S RSC Med Chem 16 (2) 457-464 2025-02-19 2024-11-29
Temporal dynamics of airborne fungi in Swedish forest nurseries. Larsson R, Menkis A, Olson Å Appl. Environ. Microbiol. 91 (2) e0130624 2025-02-19 2025-01-16
Measuring plasma membrane fluidity using confocal microscopy. Carravilla P, Andronico L, Schlegel J, ..., Lorent J, Sezgin E Nat Protoc - (-) - 2025-02-19 2025-02-19
A chromosome-level genome assembly of the European green toad (Bufotes viridis). Rödin-Mörch P, Bunikis I, Choi E, ..., Proux-Wéra E, Höglund J G3 (Bethesda) - (-) - 2025-02-19 2025-02-19
Circular RNA circASH1L(4,5) protects microRNA-129-5p from target-directed microRNA degradation in human skin wound healing. Wang Q, Niu G, Liu Z, ..., Sommar P, Xu Landén N Br J Dermatol 192 (3) 468-480 2025-02-18 2024-10-18
Microbial communities in slow sand filters for drinking water treatment adapt to organic matter altered by ozonation. Rosenqvist T, Hilding J, Suarez C, Paul CJ Water Res. 270 (-) 122843 2025-02-15 2024-11-23
Methodological aspects of investigating the resistome in pig farm environments. Ladyhina V, Rajala E, Sternberg-Lewerin S, ..., Bongcam-Rudloff E, Dicksved J J Microbiol Methods 230-231 (-) 107103 2025-02-13 2025-02-13
Imaging Single Particle Profiler to Study Nanoscale Bioparticles Using Conventional Confocal Microscopy. Sych T, Görgens A, Steiner L, ..., El Andaloussi S, Sezgin E Nano Lett. 25 (6) 2173-2180 2025-02-12 2025-01-29
Rare and common single nucleotide variants in childhood-onset systemic lupus erythematosus. Sayadi A, Sandling JK, Eloranta ML, ..., Rönnblom L, DISSECT Consortium Lupus Sci Med 12 (1) - 2025-02-11 2025-02-11
High-content morphological profiling by Cell Painting in 3D spheroids Ringers C, Holmberg D, Flobak Å, ..., Carreras Puigvert J, Spjuth O - - (-) - 2025-02-08 2025-02-08
Whole genome sequencing in early onset advanced heart failure. Linnér E, Czuba T, Gidlöf O, ..., Ehrencrona H, Smith JG Sci Rep 15 (1) 4306 2025-02-05 2025-02-05
The expanded genome of Hexamita inflata, a free-living diplomonad. Akdeniz Z, Havelka M, Stoklasa M, ..., Andersson JO, Tachezy J Sci Data 12 (1) 192 2025-02-01 2025-02-01
Single cell sequencing reveals shared clonal signatures in non-malignant B- and tumor cells in T-prolymphocytic leukemia Hesselager C, Thörn I, Marincevic M, ..., Baliakas P, Amini RM Blood Neoplasia - (-) 100076 2025-02-00 2025-02-00
Modelling age at death reveals Nordic Corded Ware paleodemography Tornberg A, Vandkilde H Archaeol Anthropol Sci 17 (2) - 2025-02-00 2025-01-20
Impact of plant diversity in potato-ley strip-cropping systems on soil microbial communities Riggi LGA, Ranheim Sveen T, Castaño C, ..., Clemmensen KE, Bahram M Applied Soil Ecology 206 (-) 105777 2025-02-00 2025-02-00
Impact of excess sugar on the whole genome DNA methylation pattern in human sperm. Jönsson J, Perfilyev A, Kugelberg U, ..., Öst A, Ling C Epigenomics 17 (2) 89-104 2025-02-00 2024-12-20
Evolved and Plastic Gene Expression in Adaptation of a Specialist Fly to a Novel Niche. Steward RA, Ortega Giménez J, Choudhary S, ..., Van Aken O, Runemark A Mol. Ecol. 34 (4) e17653 2025-02-00 2025-01-09
Earliest modern human genomes constrain timing of Neanderthal admixture. Sümer AP, Rougier H, Villalba-Mouco V, ..., Prüfer K, Krause J Nature 638 (8051) 711-717 2025-02-00 2024-12-12
Diffusion Smart-seq3 of breast cancer spheroids to explore spatial tumor biology and test evolutionary principles of tumor heterogeneity. Cougnoux A, Mahmoud L, Johnsson PA, ..., Sandberg R, Hausser J Sci Rep 15 (1) 3811 2025-01-30 2025-01-30
Modulation of biological activities in adipose derived stem cells by histone deacetylation. Abdallah S, Tabebi M, Qanadilo S, ..., Elmasry M, El-Serafi A Sci Rep 15 (1) 3629 2025-01-29 2025-01-29
The di-leucine motif in the host defense peptide LL-37 is essential for initiation of autophagy in human macrophages. Rekha RS, Padhi A, Frengen N, ..., Guðmundsson GH, Bergman P Cell Rep 44 (1) 115031 2025-01-28 2024-12-20
Association between alcohol consumption and peripheral artery disease: two de novo prospective cohorts and a systematic review with meta-analysis. Yuan S, Wu J, Chen J, ..., Åkesson A, Larsson SC Eur J Prev Cardiol 32 (2) 149-155 2025-01-27 2024-04-16
Exploring a pico-well based scRNA-seq method (HIVE) for simplified processing of equine bronchoalveolar lavage cells. Fegraeus K, Riihimäki M, Nordlund J, ..., Wernersson S, Raine A PLoS ONE 20 (1) e0317343 2025-01-24 2025-01-24
Ultra-Sensitive Detection of Bacterial Spores via SERS. Segervald J, Malyshev D, Öberg R, ..., Wågberg T, Andersson M ACS Sens. - (-) - 2025-01-23 2025-01-23
A de novo, mosaic and complex chromosome 21 rearrangement causes APP triplication and familial autosomal dominant early onset Alzheimer disease. Ehn E, Eisfeldt J, Laffita-Mesa JM, ..., Nennesemo I, Graff C Sci Rep 15 (1) 2912 2025-01-23 2025-01-23
Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration. Brown T, Mishra K, Elewa A, ..., Yun MH, Simon A Cell Genomics - (-) 100761 2025-01-22 2025-01-22
Visualization using NIPTviewer support the clinical interpretation of noninvasive prenatal testing results. Smeds P, Baranowska Körberg I, Melin M, Ladenvall C BMC Med Genomics 18 (1) 15 2025-01-20 2025-01-20
Systems-level immunomonitoring in children with solid tumors to enable precision medicine. Chen Q, Zhao B, Tan Z, ..., Ljungblad L, Brodin P Cell - (-) - 2025-01-17 2025-01-17
Somatic CAG repeat expansion in blood associates with biomarkers of neurodegeneration in Huntington's disease decades before clinical motor diagnosis. Scahill RI, Farag M, Murphy MJ, ..., Langbehn DR, Tabrizi SJ Nat. Med. - (-) - 2025-01-17 2025-01-17
Structure of the T=13 capsid of infectious pancreatic necrosis virus (IPNV)-a salmonid birnavirus. Munke A, Ahmed Abdelrahim Gamil A, Mikalsen AB, ..., Evensen Ø, Okamoto K J. Virol. - (-) e0145424 2025-01-16 2025-01-16
A thermoplastic chip for 2D and 3D correlative assays combining screening and high-resolution imaging of immune cell responses. van Ooijen H, Verron Q, Zhang H, ..., Sandström N, Önfelt B Cell Reports Methods - (-) 100965 2025-01-16 2025-01-16
The Progression of Mycosis Fungoides During Treatment with Mogamulizumab: A BIO-MUSE Case Study of the Tumor and Immune Response in Peripheral Blood and Tissue. Johansson A, Kalliara E, Belfrage E, ..., Drott K, Ek S Biomedicines 13 (1) - 2025-01-14 2025-01-14
Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users. Kaldhusdal V, Boger MF, Tjernlund A, ..., Czarnewski P, Broliden K Sci Rep 15 (1) 1014 2025-01-06 2025-01-06
Model-informed drug development for antimicrobials: translational pharmacokinetic-pharmacodynamic modelling of apramycin to facilitate prediction of efficacious dose in complicated urinary tract infections. Hernández-Lozano I, Aranzana-Climent V, Cao S, ..., Vingsbo Lundberg C, Friberg LE J. Antimicrob. Chemother. 80 (1) 301-310 2025-01-03 2024-11-16
Nucleobase catalysts for the enzymatic activation of 8-oxoguanine DNA glycosylase 1 Hank EC, D'Arcy-Evans N, Scaletti ER, ..., Helleday T, Michel M - - (-) - 2025-01-02 2025-01-02
A Rationally Designed Azobenzene Photoswitch for DNA G-Quadruplex Regulation in Live Cells. Dudek M, López-Pacios L, Sabouri N, ..., Martinez-Fernandez L, Deiana M Angew. Chem. Int. Ed. Engl. 64 (1) e202413000 2025-01-02 2024-11-06
Single-cell proteo-transcriptomic profiling reveals altered characteristics of stem and progenitor cells in patients receiving cytoreductive hydroxyurea in early-phase chronic myeloid leukemia. Komic H, Nilsson MS, Wennström L, ..., Thorén FB, Martner A Haematologica 110 (1) 117-128 2025-01-01 2025-01-01
Dark carbon fixation is a common process in the water column of stratified boreal lakes. Martin G, Rissanen AJ, Garcia SL, Peura S Sci. Total Environ. 958 (-) 177433 2025-01-01 2024-12-10
Trees First Inhibit Then Promote Litter Decomposition in the Subarctic. Jonsson M, Clemmensen KE, Castaño C, Parker TC Ecol. Lett. 28 (1) e70063 2025-01-00 2025-01-20
Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden. Tång Hallbäck E, Björkman JT, Dyrkell F, ..., Sikora P, Mölling P Microb Genom 11 (1) - 2025-01-00 2025-01-27
Chemogenomic Screening in a Patient‐Derived 3D Fatty Liver Disease Model Reveals the CHRM1‐TRPM8 Axis as a Novel Module for Targeted Intervention Youhanna S, Kemas AM, Wright SC, ..., Sundström M, Lauschke VM Adv Sci (Weinh) 12 (3) - 2025-01-00 2024-11-28

Publications 9.5.1