AIDA Data Hub (37 publications)

SciLifeLab Infrastructure Unit Since 2021.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2021

Ended: Current

Year 2025

PubMed DOI Crossref

Implementing a Nordic-Baltic Federated Health Data Network: A Case Report.

Chomutare T, Barbic A, Peltonen LM, ..., Brunak S, Dalianis H

Stud Health Technol Inform 329 (-) 1241-1245 [2025-08-07; online 2025-08-08]

AIDA Data Hub [Service]

PubMed DOI Crossref

Poincare guided geometric UNet for left atrial epicardial adipose tissue segmentation in Dixon MRI images.

Firouznia M, Ylipää E, Henningsson M, Carlhäll CJ

Sci Rep 15 (1) 25549 [2025-07-15; online 2025-07-15]

AIDA Data Hub [Service]

PubMed DOI Crossref

Referenceless 4D flow cardiovascular magnetic resonance with deep learning.

Trenti C, Ylipää E, Ebbers T, ..., Engvall J, Dyverfeldt P

J Cardiovasc Magn Reson 27 (2) 101920 [2025-06-02; online 2025-06-02]

AIDA Data Hub [Service]

Year 2023

PubMed DOI Crossref

Fast three-dimensional image generation for healthy brain aging using diffeomorphic registration.

Fu J, Tzortzakakis A, Barroso J, ..., Moreno R, Alzheimer's Disease Neuroimaging Initiative

Hum Brain Mapp 44 (4) 1289-1308 [2023-03-00; online 2022-12-05]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Diseased thyroid tissue classification in OCT images using deep learning: Towards surgical decision support.

Tampu IE, Eklund A, Johansson K, Gimm O, Haj-Hosseini N

J. Biophotonics 16 (2) e202200227 [2023-02-00; online 2022-11-11]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Deep Learning on Ultrasound Images Visualizes the Femoral Nerve with Good Precision.

Berggreen J, Johansson A, Jahr J, Möller S, Jansson T

Healthcare (Basel) 11 (2) - [2023-01-07; online 2023-01-07]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Automatic Time-Resolved Cardiovascular Segmentation of 4D Flow MRI Using Deep Learning.

Bustamante M, Viola F, Engvall J, Carlhäll CJ, Ebbers T

J Magn Reson Imaging 57 (1) 191-203 [2023-01-00; online 2022-05-04]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

Year 2022

PubMed DOI Crossref

Adopting transfer learning for neuroimaging: a comparative analysis with a custom 3D convolution neural network model.

Soliman A, Chang JR, Etminani K, ..., Alzheimer’s Disease Neuroimaging Initiative , Ochoa-Figueroa M

BMC Med Inform Decis Mak 22 (Suppl 6) 318 [2022-12-07; online 2022-12-07]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Mapping the Landscape of Care Providers' Quality Assurance Approaches for AI in Diagnostic Imaging.

Lundström C, Lindvall M

J Digit Imaging - (-) - [2022-11-09; online 2022-11-09]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Inflation of test accuracy due to data leakage in deep learning-based classification of OCT images.

Tampu IE, Eklund A, Haj-Hosseini N

Sci Data 9 (1) 580 [2022-09-22; online 2022-09-22]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

AI-based prostate analysis system trained without human supervision to predict patient outcome from tissue samples.

Walhagen P, Bengtsson E, Lennartz M, Sauter G, Busch C

J Pathol Inform 13 (-) 100137 [2022-09-08; online 2022-09-08]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

DOI Crossref

Learning Representations with Contrastive Self-Supervised Learning for Histopathology Applications

Stacke K, Unger J, Lundström C, Eilertsen G

Machine Learning for Biomedical Imaging 1 (August 2022 issue) - [2022-08-16; online 2022-08-16]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Pelvic U-Net: multi-label semantic segmentation of pelvic organs at risk for radiation therapy anal cancer patients using a deeply supervised shuffle attention convolutional neural network.

Lempart M, Nilsson MP, Scherman J, ..., Munck Af Rosenschöld P, Olsson LE

Radiat Oncol 17 (1) 114 [2022-06-28; online 2022-06-28]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Generalisation effects of predictive uncertainty estimation in deep learning for digital pathology.

Pocevičiūtė M, Eilertsen G, Jarkman S, Lundström C

Sci Rep 12 (1) 8329 [2022-05-18; online 2022-05-18]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

DOI Crossref

Early Detection of Oral Potentially Malignant Disorders: A Review on Prospective Screening Methods with Regard to Global Challenges

Haj-Hosseini N, Lindblad J, Hasséus B, ..., Subramaniam N, Hirsch JM

J. Maxillofac. Oral Surg. - (-) - [2022-04-15; online 2022-04-15]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Semi-supervised learning with natural language processing for right ventricle classification in echocardiography-a scalable approach.

Hagberg E, Hagerman D, Johansson R, ..., Alvén J, Hjelmgren O

Comput Biol Med 143 (-) 105282 [2022-02-15; online 2022-02-15]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

A 3D deep learning model to predict the diagnosis of dementia with Lewy bodies, Alzheimer's disease, and mild cognitive impairment using brain 18F-FDG PET.

Etminani K, Soliman A, Davidsson A, ..., Garibotto V, Ochoa-Figueroa M

Eur J Nucl Med Mol Imaging 49 (2) 563-584 [2022-01-00; online 2021-07-30]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

Year 2021

PubMed DOI Crossref

Artificial Intelligence Detection of Missed Cancers at Digital Mammography That Were Detected at Digital Breast Tomosynthesis.

Dahlblom V, Andersson I, Lång K, ..., Zackrisson S, Dustler M

Radiol Artif Intell 3 (6) e200299 [2021-11-00; online 2021-09-01]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Automating classification of osteoarthritis according to Kellgren-Lawrence in the knee using deep learning in an unfiltered adult population.

Olsson S, Akbarian E, Lind A, Razavian AS, Gordon M

BMC Musculoskelet Disord 22 (1) 844 [2021-10-02; online 2021-10-02]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Presenting artificial intelligence, deep learning, and machine learning studies to clinicians and healthcare stakeholders: an introductory reference with a guideline and a Clinical AI Research (CAIR) checklist proposal.

Olczak J, Pavlopoulos J, Prijs J, ..., Hedlund J, Gordon M

Acta Orthop 92 (5) 513-525 [2021-10-00; online 2021-05-14]

AIDA Data Hub [Collaborative] Bioinformatics (NBIS) [Collaborative]

PubMed DOI Crossref

Using Deep Learning to Emulate the Use of an External Contrast Agent in Cardiovascular 4D Flow MRI.

Bustamante M, Viola F, Carlhäll CJ, Ebbers T

J Magn Reson Imaging 54 (3) 777-786 [2021-09-00; online 2021-02-25]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Q-space trajectory imaging with positivity constraints (QTI+).

Herberthson M, Boito D, Haije TD, ..., Westin CF, Özarslan E

Neuroimage 238 (-) 118198 [2021-09-00; online 2021-05-21]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Computing the orientational-average of diffusion-weighted MRI signals: a comparison of different techniques.

Afzali M, Knutsson H, Özarslan E, Jones DK

Sci Rep 11 (1) 14345 [2021-07-12; online 2021-07-12]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Does Anatomical Contextual Information Improve 3D U-Net-Based Brain Tumor Segmentation?

Tampu IE, Haj-Hosseini N, Eklund A

Diagnostics 11 (7) - [2021-06-25; online 2021-06-25]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Artificial intelligence for the classification of fractures around the knee in adults according to the 2018 AO/OTA classification system.

Lind A, Akbarian E, Olsson S, ..., Razavian AS, Gordon M

PLoS ONE 16 (4) e0248809 [2021-04-01; online 2021-04-01]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

DOI Crossref

CytoBrowser: a browser-based collaborative annotation platform for whole slide images

Rydell C, Lindblad J

F1000Res 10 (-) 226 [2021-03-22; online 2021-03-22]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training.

Stadler CB, Lindvall M, Lundström C, ..., Woisetschläger M, Forsberg D

J Digit Imaging 34 (1) 105-115 [2021-02-00; online 2020-11-11]

AIDA Data Hub [Technology development] Bioinformatics (NBIS) [Technology development]

PubMed DOI Crossref

Measuring Domain Shift for Deep Learning in Histopathology.

Stacke K, Eilertsen G, Unger J, Lundstrom C

IEEE J Biomed Health Inform 25 (2) 325-336 [2021-02-00; online 2021-02-05]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

DOI Crossref

Vox2Vox: 3D-GAN for Brain Tumour Segmentation

Cirillo MD, Abramian D, Eklund A

- - (-) 274-284 [2021-00-00; online 2021-03-27]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

Year 2020

PubMed DOI Crossref

Development and evaluation of a deep learning based artificial intelligence for automatic identification of gold fiducial markers in an MRI-only prostate radiotherapy workflow.

Gustafsson CJ, Swärd J, Adalbjörnsson SI, Jakobsson A, Olsson LE

Phys Med Biol 65 (22) 225011 [2020-11-12; online 2020-11-12]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Key insights in the AIDA community policy on sharing of clinical imaging data for research in Sweden.

Hedlund J, Eklund A, Lundström C

Sci Data 7 (1) 331 [2020-10-06; online 2020-10-06]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Multi-Reader-Multi-Split Annotation of Emphysema in Computed Tomography.

Lidén M, Hjelmgren O, Vikgren J, Thunberg P

J Digit Imaging 33 (5) 1185-1193 [2020-10-00; online 2020-08-10]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Optical coherence tomography for thyroid pathology: 3D analysis of tissue microstructure.

Emil Tampu I, Maintz M, Koller D, ..., Eklund A, Haj-Hosseini N

Biomed. Opt. Express 11 (8) 4130-4149 [2020-08-01; online 2020-07-09]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

Year 2019

PubMed DOI Crossref

Annotations, Ontologies, and Whole Slide Images - Development of an Annotated Ontology-Driven Whole Slide Image Library of Normal and Abnormal Human Tissue.

Lindman K, Rose JF, Lindvall M, Lundström C, Treanor D

J Pathol Inform 10 (-) 22 [2019-07-23; online 2019-07-23]

AIDA Data Hub [Collaborative] Bioinformatics (NBIS) [Collaborative]

DOI Crossref

Pelvis Segmentation Using Multi-pass U-Net and Iterative Shape Estimation

Wang C, Connolly B, de Oliveira Lopes PF, Frangi AF, Smedby Ö

- - (-) 49-57 [2019-00-00; online 2019-01-09]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

Year 2018

DOI Crossref

One-view breast tomosynthesis versus two-view mammography in the Malmö Breast Tomosynthesis Screening Trial (MBTST): a prospective, population-based, diagnostic accuracy study

Zackrisson S, Lång K, Rosso A, ..., Tingberg A, Andersson I

The Lancet Oncology 19 (11) 1493-1503 [2018-11-00; online 2018-11-00]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

Year 2017

PubMed DOI Crossref

Registration free automatic identification of gold fiducial markers in MRI target delineation images for prostate radiotherapy.

Gustafsson C, Korhonen J, Persson E, ..., Nyholm T, Olsson LE

Med Phys 44 (11) 5563-5574 [2017-11-00; online 2017-09-11]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]