Bertilsson S

Family name	Bertilsson
Given name	Stefan
Initials	S
ORCID	ORCID 0000-0002-4265-1835
Affiliations	Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden.

17 publications

PubMed DOI Crossref

Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health.

Vera-Ponce de León A, Hensen T, Hoetzinger M, ..., Pope PB, La Rosa SL

Nat Microbiol 9 (11) 3059-3074 [2024-11-00; online 2024-10-14]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Candidatus Desulforudis audaxviator dominates a 975 m deep groundwater community in central Sweden.

Westmeijer G, van Dam F, Kietäväinen R, ..., Drake H, Dopson M

Commun Biol 7 (1) 1332 [2024-10-15; online 2024-10-15]

Bioinformatics Support for Computational Resources [Service]

DOI Crossref

Fluorescently labeled prey surrogates in combination with fluorescence‐activated cell sorting successfully discriminate actively feeding mixotrophs in a lake water sample

Florenza J, Divne A, Bertilsson S

Limnol Oceanogr 69 (5) 1030-1044 [2024-05-00; online 2024-03-13]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A pan-genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin.

Biderre-Petit C, Courtine D, Hennequin C, ..., Divne A, Hochart C

Mol Ecol Resour - (-) e13923 [2024-01-08; online 2024-01-08]

Microbial Single Cell Genomics [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Shotgun metagenomes from productive lakes in an urban region of Sweden.

Rodríguez-Gijón A, Hampel JJ, Dharamshi J, Bertilsson S, Garcia SL

Sci Data 10 (1) 810 [2023-11-17; online 2023-11-17]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

De novoassembled single-cell transcriptomes from aquatic phytoflagellates reveal a metabolically distinct cell population

Florenza J, Jeevannavar A, Divne AM, Tamminen M, Bertilsson S

- - (-) - [2023-08-31; online 2023-08-31]

Microbial Single Cell Genomics [Technology development]

PubMed DOI Crossref

Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity.

Jurdzinski KT, Mehrshad M, Delgado LF, ..., Bertilsson S, Andersson AF

Sci Adv 9 (21) eadg2059 [2023-05-26; online 2023-05-26]

Bioinformatics Support for Computational Resources [Service]

DOI Crossref

Taxonomic and functional diversity of aquatic heterotrophs is sustained by dissolved organic matter chemodiversity

Garcia SL, Nuy JK, Mehrshad M, ..., Hawkes J, Bertilsson S

- - (-) - [2022-03-22; online 2022-03-22]

Microbial Single Cell Genomics [Technology development]

PubMed DOI Crossref

Norway spruce postglacial recolonization of Fennoscandia.

Nota K, Klaminder J, Milesi P, ..., Suyama Y, Parducci L

Nat Commun 13 (1) 1333 [2022-03-14; online 2022-03-14]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities.

Westmeijer G, Mehrshad M, Turner S, ..., Bertilsson S, Dopson M

Commun Biol 5 (1) 37 [2022-01-11; online 2022-01-11]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Oxygen‐deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments

Capo E, Broman E, Bonaglia S, ..., Nascimento FJA, Björn E

Limnol Oceanogr 67 (1) 135-146 [2022-01-00; online 2021-11-18]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater.

Mehrshad M, Lopez-Fernandez M, Sundh J, ..., Bertilsson S, Dopson M

Nat Commun 12 (1) 4253 [2021-07-12; online 2021-07-12]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds.

Buck M, Garcia SL, Fernandez L, ..., Bertilsson S, Peura S

Sci Data 8 (1) 131 [2021-05-14; online 2021-05-14]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles.

Holmfeldt K, Nilsson E, Simone D, ..., Bertilsson S, Dopson M

Commun Biol 4 (1) 307 [2021-03-08; online 2021-03-08]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

PubMed DOI Crossref

Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts.

Mondav R, Bertilsson S, Buck M, ..., Lindström ES, Garcia SL

mSystems 5 (5) - [2020-09-29; online 2020-09-29]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Uncovering microbial inter-domain interactions in complex communities.

Florenza J, Tamminen M, Bertilsson S

Philos. Trans. R. Soc. Lond., B, Biol. Sci. 374 (1786) 20190087 [2019-11-25; online 2019-10-07]

Microbial Single Cell Genomics [Technology development]

PubMed DOI Crossref

Molecular Basis and Ecological Relevance of Caulobacter Cell Filamentation in Freshwater Habitats.

Heinrich K, Leslie DJ, Morlock M, Bertilsson S, Jonas K

MBio 10 (4) - [2019-08-20; online 2019-08-20]

Global Proteomics and Proteogenomics [Service]