Mol. Ecol.

ISSN	1365-294X
ISSN-L	0962-1083
IUID	4942edef23c34d13b88e67adbb9fd891
Modified	2020-11-27T13:14:02.111Z
Created	2017-05-09T09:12:03.113Z

PubMed DOI Crossref

Evolved and Plastic Gene Expression in Adaptation of a Specialist Fly to a Novel Niche.

Steward RA, Ortega Giménez J, Choudhary S, ..., Van Aken O, Runemark A

Mol. Ecol. 34 (4) e17653 [2025-02-00; online 2025-01-09]

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Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes.

Jayaprasad S, Peona V, Ellerstrand SJ, ..., Schielzeth H, Palacios-Gimenez OM

Mol. Ecol. - (-) e17567 [2024-10-30; online 2024-10-30]

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Plasticity for the win: Flexible transcriptional response to host plant switches in the comma butterfly (Polygonia c-album).

Schneider K, Steward RA, Celorio-Mancera MdlP, ..., Wheat CW, Nylin S

Mol. Ecol. 33 (16) e17479 [2024-08-00; online 2024-07-22]

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Facilitated introgression from domestic goat into Alpine ibex at immune loci.

Münger X, Robin M, Dalén L, Grossen C

Mol. Ecol. 33 (14) e17429 [2024-07-00; online 2024-06-07]

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A time course analysis through diapause reveals dynamic temporal patterns of microRNAs associated with endocrine regulation in the butterfly Pieris napi.

Roberts KT, Steward RA, Süess P, Lehmann P, Wheat CW

Mol. Ecol. - (-) e17348 [2024-04-10; online 2024-04-10]

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Genomic variation in montane bumblebees in Scandinavia: High levels of intraspecific diversity despite population vulnerability.

Liu Y, Olsson A, Larva T, ..., Cederberg B, Webster MT

Mol. Ecol. 33 (4) e17251 [2024-02-00; online 2023-12-19]

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New indicators for monitoring genetic diversity applied to alpine brown trout populations using whole genome sequence data.

Kurland S, Saha A, Keehnen N, ..., Ryman N, Laikre L

Mol. Ecol. 33 (2) e17213 [2024-01-00; online 2023-11-28]

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Population genomics of the muskox' resilience in the near absence of genetic variation.

Pečnerová P, Lord E, Garcia-Erill G, ..., Moltke I, Siegismund HR

Mol. Ecol. 33 (2) e17205 [2024-01-00; online 2023-11-16]

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Clones on the run: The genomics of a recently expanded partially clonal species.

Pereyra RT, Rafajlović M, De Wit P, ..., Töpel M, Johannesson K

Mol. Ecol. 32 (15) 4209-4223 [2023-08-00; online 2023-05-18]

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Environmental stress during larval development induces DNA methylation shifts in the migratory painted lady butterfly (Vanessa cardui).

Boman J, Zhu Y, Höök L, ..., Talavera G, Backström N

Mol. Ecol. 32 (13) 3513-3523 [2023-07-00; online 2023-04-23]

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From high masked to high realized genetic load in inbred Scandinavian wolves.

Smeds L, Ellegren H

Mol. Ecol. 32 (7) 1567-1580 [2023-04-00; online 2022-12-13]

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Migratory behaviour is positively associated with genetic diversity in butterflies.

García-Berro A, Talla V, Vila R, ..., Backström N, Talavera G

Mol. Ecol. 32 (3) 560-574 [2023-02-00; online 2022-11-23]

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Isolated Grauer's gorilla populations differ in diet and gut microbiome.

Michel A, Minocher R, Niehoff PP, ..., Caillaud D, Guschanski K

Mol. Ecol. - (-) - [2022-08-17; online 2022-08-17]

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Satellite DNA evolution in Corvoidea inferred from short and long reads.

Peona V, Kutschera VE, Blom MPK, Irestedt M, Suh A

Mol. Ecol. - (-) - [2022-04-30; online 2022-04-30]

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Local selection signals in the genome of blue tits emphasize regulatory and neuronal evolution.

Mueller JC, Botero-Delgadillo E, Espíndola-Hernández P, ..., Gruselius J, Kempenaers B

Mol. Ecol. 31 (5) 1504-1514 [2022-03-00; online 2022-01-22]

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PubMed DOI Crossref

A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component.

Christmas MJ, Jones JC, Olsson A, ..., Miller-Struttmann NE, Webster MT

Mol. Ecol. 31 (4) 1111-1127 [2022-02-00; online 2021-12-07]

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PubMed DOI Crossref

Whole-genome resequencing confirms reproductive isolation between sympatric demes of brown trout (Salmo trutta) detected with allozymes.

Saha A, Andersson A, Kurland S, ..., Ryman N, Laikre L

Mol. Ecol. 31 (2) 498-511 [2022-01-00; online 2021-11-15]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum).

Sánchez-Barreiro F, Gopalakrishnan S, Ramos-Madrigal J, ..., Moodley Y, Gilbert MTP

Mol. Ecol. 30 (23) 6355-6369 [2021-12-00; online 2021-07-07]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation.

Tang Q, Burri R, Liu Y, ..., Heckel G, Schweizer M

Mol. Ecol. - (-) - [2021-10-21; online 2021-10-21]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis).

Nadachowska-Brzyska K, Dutoit L, Smeds L, ..., Gustafsson L, Ellegren H

Mol. Ecol. 30 (16) 3965-3973 [2021-08-00; online 2021-07-01]

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PubMed DOI Crossref

The genomics of phenotypically differentiated Asellus aquaticus cave, surface stream and lake ecotypes.

Bakovic V, Martin Cerezo ML, Höglund A, ..., Hargeby A, Wright D

Mol. Ecol. 30 (14) 3530-3547 [2021-07-00; online 2021-06-08]

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PubMed DOI Crossref

Quality of phytoplankton deposition structures bacterial communities at the water-sediment interface.

Izabel-Shen D, Albert S, Winder M, Farnelid H, Nascimento FJA

Mol. Ecol. 30 (14) 3515-3529 [2021-07-00; online 2021-06-11]

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PubMed DOI Crossref

High throughput shotgun sequencing of eRNA reveals taxonomic and derived functional shifts across a benthic productivity gradient.

Broman E, Bonaglia S, Norkko A, Creer S, Nascimento FJA

Mol. Ecol. 30 (13) 3023-3039 [2021-07-00; online 2020-08-19]

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PubMed DOI Crossref

Genomic and fitness consequences of inbreeding in an endangered carnivore.

Hasselgren M, Dussex N, von Seth J, ..., Dalén L, Norén K

Mol. Ecol. 30 (12) 2790-2799 [2021-06-00; online 2021-05-20]

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PubMed DOI Crossref

Genome-wide single nucleotide polymorphism markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species.

Rengefors K, Gollnisch R, Sassenhagen I, ..., Bassham S, Ahrén D

Mol. Ecol. 30 (4) 912-925 [2021-02-00; online 2021-01-20]

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PubMed DOI Crossref

Host plant diet affects growth and induces altered gene expression and microbiome composition in the wood white (Leptidea sinapis) butterfly.

Näsvall K, Wiklund C, Mrazek V, ..., Vila R, Backström N

Mol. Ecol. 30 (2) 499-516 [2021-01-00; online 2020-12-14]

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PubMed DOI Crossref

Reconstructing marine plankton food web interactions using DNA metabarcoding.

Zamora-Terol S, Novotny A, Winder M

Mol. Ecol. 29 (17) 3380-3395 [2020-09-00; online 2020-08-09]

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PubMed DOI Crossref

Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities.

Abrego N, Roslin T, Huotari T, ..., Schmidt NM, Ovaskainen O

Mol. Ecol. 29 (14) 2736-2746 [2020-07-00; online 2020-07-04]

NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Balancing selection in Pattern Recognition Receptor signalling pathways is associated with gene function and pleiotropy in a wild rodent.

Lundberg M, Zhong X, Konrad A, Olsen RA, Råberg L

Mol. Ecol. 29 (11) 1990-2003 [2020-06-00; online 2020-06-03]

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PubMed DOI Crossref

Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.

Wang J, Street NR, Park EJ, Liu J, Ingvarsson PK

Mol. Ecol. 29 (6) 1120-1136 [2020-03-00; online 2020-03-09]

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PubMed DOI Crossref

Genotypic variation in Norway spruce correlates to fungal communities in vegetative buds.

Elfstrand M, Zhou L, Baison J, ..., Stenlid J, García-Gil MR

Mol. Ecol. 29 (1) 199-213 [2020-01-00; online 2019-12-09]

NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

31° South: The physiology of adaptation to arid conditions in a passerine bird.

Ribeiro ÂM, Puetz L, Pattinson NB, ..., Smit B, Gilbert MTP

Mol. Ecol. 28 (16) 3709-3721 [2019-08-00; online 2019-08-06]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Salinity drives meiofaunal community structure dynamics across the Baltic ecosystem.

Broman E, Raymond C, Sommer C, ..., Creer S, Nascimento FJA

Mol. Ecol. 28 (16) 3813-3829 [2019-08-00; online 2019-09-05]

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PubMed DOI Crossref

Genetic basis of amphibian larval development along a latitudinal gradient: Gene diversity, selection and links with phenotypic variation in transcription factor C/EBP-1.

Meyer-Lucht Y, Luquet E, Jóhannesdóttir F, ..., Höglund J, Laurila A

Mol. Ecol. 28 (11) 2786-2801 [2019-06-00; online 2019-06-07]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers.

Nadachowska-Brzyska K, Burri R, Ellegren H

Mol. Ecol. 28 (9) 2290-2304 [2019-05-00; online 2019-05-29]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Chromosomal inversions associated with environmental adaptation in honeybees.

Christmas MJ, Wallberg A, Bunikis I, ..., Wallerman O, Webster MT

Mol. Ecol. 28 (6) 1358-1374 [2019-03-00; online 2018-12-21]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Genetic architecture of traits associated with reproductive barriers in Silene: Coupling, sex chromosomes and variation.

Liu X, Karrenberg S

Mol. Ecol. 27 (19) 3889-3904 [2018-10-00; online 2018-04-29]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation.

Leal L, Talla V, Källman T, ..., Vila R, Backström N

Mol. Ecol. 27 (4) 935-948 [2018-02-00; online 2018-02-26]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Demographic inference from whole-genome and RAD sequencing data suggests alternating human impacts on goose populations since the last ice age.

Pujolar JM, Dalén L, Hansen MM, Madsen J

Mol. Ecol. 26 (22) 6270-6283 [2017-11-00; online 2017-11-03]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genomewide analysis of admixture and adaptation in the Africanized honeybee.

Nelson RM, Wallberg A, Simões ZLP, Lawson DJ, Webster MT

Mol. Ecol. 26 (14) 3603-3617 [2017-07-00; online 2017-04-24]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The transcriptome of the avian malaria parasite Plasmodium ashfordi displays host-specific gene expression.

Videvall E, Cornwallis CK, Ahrén D, ..., Valkiūnas G, Hellgren O

Mol. Ecol. 26 (11) 2939-2958 [2017-06-00; online 2017-04-08]

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Genetic rescue in a severely inbred wolf population.

Åkesson M, Liberg O, Sand H, ..., Bensch S, Flagstad Ø

Mol. Ecol. 25 (19) 4745-4756 [2016-10-00; online 2016-08-09]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Disruptive selection without genome-wide evolution across a migratory divide.

von Rönn JA, Shafer AB, Wolf JB

Mol. Ecol. 25 (11) 2529-2541 [2016-06-00; online 2016-01-11]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Divergence in gene expression within and between two closely related flycatcher species.

Uebbing S, Künstner A, Mäkinen H, ..., Searle SM, Ellegren H

Mol. Ecol. 25 (9) 2015-2028 [2016-05-00; online 2016-03-02]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers.

Nadachowska-Brzyska K, Burri R, Smeds L, Ellegren H

Mol. Ecol. 25 (5) 1058-1072 [2016-03-00; online 2016-01-23]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The influence of population structure on gene expression and flowering time variation in the ubiquitous weed Capsella bursa-pastoris (Brassicaceae).

Kryvokhyzha D, Holm K, Chen J, ..., Lagercrantz U, Lascoux M

Mol. Ecol. 25 (5) 1106-1121 [2016-03-00; online 2016-01-23]

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Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks.

Huang Y, Chain FJ, Panchal M, ..., Milinski M, Feulner PG

Mol. Ecol. 25 (4) 943-958 [2016-02-00; online 2016-01-11]

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Transcriptomics of colour patterning and coloration shifts in crows.

Poelstra JW, Vijay N, Hoeppner MP, Wolf JB

Mol. Ecol. 24 (18) 4617-4628 [2015-09-00; online 2015-08-25]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Auxotrophy and intrapopulation complementary in the 'interactome' of a cultivated freshwater model community.

Garcia SL, Buck M, McMahon KD, ..., Eiler A, Warnecke F

Mol. Ecol. 24 (17) 4449-4459 [2015-09-00; online 2015-07-17]

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A prezygotic transmission distorter acting equally in female and male zebra finches Taeniopygia guttata.

Knief U, Schielzeth H, Ellegren H, Kempenaers B, Forstmeier W

Mol. Ecol. 24 (15) 3846-3859 [2015-08-00; online 2015-06-20]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Mixed ancestry and admixture in Kauai's feral chickens: invasion of domestic genes into ancient Red Junglefowl reservoirs.

Gering E, Johnsson M, Willis P, Getty T, Wright D

Mol. Ecol. 24 (9) 2112-2124 [2015-05-00; online 2015-02-07]

NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure

PubMed DOI Crossref

Do the same genes underlie parallel phenotypic divergence in different Littorina saxatilis populations?

Westram AM, Galindo J, Alm Rosenblad M, ..., Panova M, Butlin RK

Mol. Ecol. 23 (18) 4603-4616 [2014-09-00; online 2014-08-13]

Bioinformatics (NBIS) Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

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A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution.

Kawakami T, Smeds L, Backström N, ..., Olason P, Ellegren H

Mol. Ecol. 23 (16) 4035-4058 [2014-08-00; online 2014-05-28]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

The role of pleiotropy and linkage in genes affecting a sexual ornament and bone allocation in the chicken.

Johnsson M, Rubin CJ, Höglund A, ..., Jensen P, Wright D

Mol. Ecol. 23 (9) 2275-2286 [2014-05-00; online 2014-03-25]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Stepping-stone expansion and habitat loss explain a peculiar genetic structure and distribution of a forest insect.

Cassel-Lundhagen A, Ronnås C, Battisti A, Wallén J, Larsson S

Mol. Ecol. 22 (12) 3362-3375 [2013-06-00; online 2013-05-31]

NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure

PubMed DOI Crossref

QTL and quantitative genetic analysis of beak morphology reveals patterns of standing genetic variation in an Estrildid finch.

Knief U, Schielzeth H, Kempenaers B, Ellegren H, Forstmeier W

Mol. Ecol. 21 (15) 3704-3717 [2012-08-00; online 2012-06-15]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Heterozygosity-fitness correlations in zebra finches: microsatellite markers can be better than their reputation.

Forstmeier W, Schielzeth H, Mueller JC, Ellegren H, Kempenaers B

Mol. Ecol. 21 (13) 3237-3249 [2012-07-00; online 2012-05-05]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

QTL linkage mapping of wing length in zebra finch using genome-wide single nucleotide polymorphisms markers.

Schielzeth H, Forstmeier W, Kempenaers B, Ellegren H

Mol. Ecol. 21 (2) 329-339 [2012-01-00; online 2011-11-25]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage.

Wright D, Rubin CJ, Martinez Barrio A, ..., Jensen P, Andersson L

Mol. Ecol. 19 (23) 5140-5156 [2010-12-00; online 2010-11-03]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

No evidence for Z-chromosome rearrangements between the pied flycatcher and the collared flycatcher as judged by gene-based comparative genetic maps.

Backström N, Palkopoulou E, Qvarnström A, Ellegren H

Mol. Ecol. 19 (16) 3394-3405 [2010-08-00; online 2010-07-31]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Genetic diversity and differentiation among Lagopus lagopus populations in Scandinavia and Scotland: evolutionary significant units confirmed by SNP markers.

Quintela M, Berlin S, Wang B, Höglund J

Mol. Ecol. 19 (12) 2380-2393 [2010-06-01; online 2010-07-20]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.

Künstner A, Wolf JB, Backström N, ..., Warren WC, Ellegren H

Mol. Ecol. 19 Suppl 1 (Suppl 1) 266-276 [2010-03-00; online 2010-04-02]

NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

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