Bioinformatics Support, Infrastructure and Training

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Publications

2021 (63)

2020 (592)

2019 (729)

2018 (643)

2017 (697)

2016 (660)

2015 (427)

2014 (376)

2013 (320)

2012 (243)

2011 (163)

2010 (139)

All (5052)


Infrastructure Units

Journals

SciLifeLab Infrastructure Unit Since 2021.

Started: 2021

Ended: Current

491 publications

Year 2021

PubMed DOI Crossref
Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts
Zaghlool A, Niazi A, Björklund ÅK, ..., Ameur A, Feuk L
Sci Rep 11 (1) 4076 [2021-12-00; online 2021-02-18]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
DOI Crossref
Endophilin A2 deficiency protects rodents from autoimmune arthritis by modulating T cell activation
Norin U, Rintisch C, Meng L, ..., Bäckdahl L, Holmdahl R
Nat Commun 12 (1) - [2021-12-00; online 2021-01-27]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Metabolic Characterization of Plasma and Cyst Fluid from Cystic Precursors to Pancreatic Cancer Patients Reveal Metabolic Signatures of Bacterial Infection
Morgell A, Reisz JA, Ateeb Z, ..., Chen MS, D’Alessandro A
J. Proteome Res. - (-) - [2021-03-15; online 2021-03-15]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology
DOI Crossref
Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce
Schneider AN, Sundh J, Sundström G, ..., Hurry V, Street NR
mSystems 6 (1) - [2021-02-16; online 2021-02-16]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Genomic characterization of relapsed acute myeloid leukemia reveals novel putative therapeutic targets
Stratmann S, Yones SA, Mayrhofer M, ..., Cavelier L, Holmfeldt L
Blood Adv 5 (3) 900-912 [2021-02-09; online 2021-02-09]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
A plasma lipid signature predicts incident coronary artery disease
Ottosson F, Khoonsari PE, Gerl MJ, ..., Melander O, Fernandez C
International Journal of Cardiology - (-) - [2021-02-00; online 2021-02-00]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Monocytes in sarcoidosis are potent TNF producers and predict disease outcome
Lepzien R, Liu S, Czarnewski P, ..., Grunewald J, Smed-Sörensen A
Eur Respir J - (-) 2003468 [2021-01-14; online 2021-01-14]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing
Mazzurana L, Czarnewski P, Jonsson V, ..., Almer S, Mjösberg J
Cell Res - (-) - [2021-01-08; online 2021-01-08]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG)
DOI Crossref
Genome‐wide SNP markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species
Rengefors K, Gollnisch R, Sassenhagen I, ..., Bassham S, Ahrén D
Mol Ecol - (-) - [2021-01-00; online 2021-01-00]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Year 2020

PubMed DOI Crossref
Genetic Risk Score for Serum 25-Hydroxyvitamin D Concentration Helps to Guide Personalized Vitamin D Supplementation in Healthy Finnish Adults.
Sallinen RJ, Dethlefsen O, Ruotsalainen S, ..., Kaunisto MA, Kallioniemi O
pii: 6056509
J. Nutr. - (-) - [2020-12-31; online 2020-12-31]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia
Halvorsen M, Huh R, Oskolkov N, ..., Sullivan PF, Szatkiewicz JP
Nat Commun 11 (1) - [2020-12-00; online 2020-04-15]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service] Systems Biology [Collaborative]
DOI Crossref
Spatio-molecular domains identified in the mouse subthalamic nucleus and neighboring glutamatergic and GABAergic brain structures
Wallén-Mackenzie Å, Dumas S, Papathanou M, ..., König N, Björklund ÅK
Commun Biol 3 (1) - [2020-12-00; online 2020-07-03]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG)
PubMed DOI Crossref
Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei
Montoliu-Nerin M, Sánchez-García M, Bergin C, ..., Johannesson H, Rosling A
Sci Rep 10 (1) - [2020-12-00; online 2020-01-28]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Microbial Single Cell Genomics [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A spontaneous mitonuclear epistasis converging on Rieske Fe-S protein exacerbates complex III deficiency in mice
Purhonen J, Grigorjev V, Ekiert R, ..., Fellman V, Kallijärvi J
Nat Commun 11 (1) - [2020-12-00; online 2020-01-16]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells.
Appelberg S, Gupta S, Svensson Akusjärvi S, ..., Mirazimi A, Neogi U
pmc: PMC7473213
Emerg Microbes Infect 9 (1) 1748-1760 [2020-12-00; online 2020-07-22]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach
von der Heyde B, Emmanouilidou A, Mazzaferro E, ..., Brooke HL, den Hoed M
Sci Rep 10 (1) 11831 [2020-12-00; online 2020-07-16]
BioImage Informatics Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Genome Engineering Zebrafish [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
DOI Crossref
Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson’s disease
Tiklová K, Nolbrant S, Fiorenzano A, ..., Perlmann T, Parmar M
Nat Commun 11 (1) - [2020-12-00; online 2020-05-15]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Naming the untouchable – environmental sequences and niche partitioning as taxonomical evidence in fungi
Kalsoom Khan F, Kluting K, Tångrot J, ..., Ryberg M, Rosling A
IMA Fungus 11 (1) - [2020-12-00; online 2020-11-03]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
The influence of common polygenic risk and gene sets on social skills group training response in autism spectrum disorder
Li D, Choque-Olsson N, Jiao H, ..., Bölte S, Tammimies K
npj Genom. Med. 5 (1) - [2020-12-00; online 2020-10-12]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion
Almeida P, Proux-Wera E, Churcher A, ..., Berlin S, Mank JE
BMC Biol. 18 (1) - [2020-12-00; online 2020-06-30]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]
DOI Crossref
Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes
Sakthikumar S, Roy A, Haseeb L, ..., Lindblad-Toh K, Forsberg-Nilsson K
Genome Biol. 21 (1) - [2020-12-00; online 2020-06-09]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
New Insights into the Microbial Profiles of Infected Root Canals in Traumatized Teeth
Manoharan L, Brundin M, Rakhimova O, Chávez de Paz L, Romani Vestman N
J Clin Med 9 (12) 3877 [2020-11-28; online 2020-11-28]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Comparison of DNA Methylation Profiles of Hemostatic Genes between Liver Tissue and Peripheral Blood within Individuals.
Olsson Lindvall M, Angerfors A, Andersson B, ..., Stanne TM, Jern C
Thromb. Haemost. - (-) - [2020-11-17; online 2020-11-17]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
PubMed DOI Crossref
Uncemented or cemented stems in first-time revision total hip replacement? An observational study of 867 patients including assessment of femoral bone defect size.
Tyson Y, Hillman C, Majenburg N, ..., Mohaddes M, Hailer NP
Acta Orthop - (-) 1-8 [2020-11-12; online 2020-11-12]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis
Mahmud AKMF, Nilsson K, Fahlgren A, ..., Avican K, Fällman M
mSystems 5 (6) - [2020-11-10; online 2020-11-10]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Drought legacy affects microbial community trait distributions related to moisture along a savanna‐grassland precipitation gradient
Leizeaga A, Hicks LC, Manoharan L, Hawkes CV, Rousk J
J Ecol - (-) - [2020-11-05; online 2020-11-05]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Metabolic characterization of plasma and cyst fluid from cystic precursors to pancreatic cancer patients reveal metabolic signatures of bacterial infection.
Morgell A, Reisz JA, Ateeb Z, ..., Sällberg Chen M, D'Alessandro A
pmc: PMC7654893
medRxiv - (-) - [2020-11-04; online 2020-11-04]
Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
PubMed DOI Crossref
Epigenetic alterations in skin homing CD4 +CLA+ T cells of atopic dermatitis patients.
Acevedo N, Benfeitas R, Katayama S, ..., Söderhäll C, Scheynius A
pii: 10.1038/s41598-020-74798-z pmc: PMC7582180
Sci Rep 10 (1) 18020 [2020-10-22; online 2020-10-22]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training
PubMed DOI Crossref
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
Peona V, Blom MPK, Xu L, ..., Irestedt M, Suh A
Mol Ecol Resour 21 (1) 263-286 [2020-10-10; online 2020-10-10]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
DOI Crossref
Whole genome sequencing of apparently mutation-negative MEN1 patients
Backman S, Bajic D, Crona J, ..., Skogseid B, Stålberg P
Eur. J. Endocrinol. 182 (1) 35-45 [2020-10-00; online 2019-10-00]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sources of variation in cell-type RNA-Seq profiles.
Gustafsson J, Held F, Robinson JL, ..., Jörnsten R, Nielsen J
pii: PONE-D-20-18758 pmc: PMC7505444
PLoS ONE 15 (9) e0239495 [2020-09-21; online 2020-09-21]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
DOI Crossref
The methylation landscape and its role in domestication and gene regulation in the chicken
Höglund A, Henriksen R, Fogelholm J, ..., Jensen P, Wright D
Nat Ecol Evol 4 (12) 1713-1724 [2020-09-21; online 2020-09-21]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Hypoxia inducible factor-2α importance for migration, proliferation, and self-renewal of trunk neural crest cells.
Niklasson CU, Fredlund E, Monni E, ..., Bronner ME, Mohlin S
Dev. Dyn. - (-) - [2020-09-17; online 2020-09-17]
Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training
PubMed DOI Crossref
Reconstruction of the birth of a male sex chromosome present in Atlantic herring.
Rafati N, Chen J, Herpin A, ..., Schartl M, Andersson L
pii: 2009925117
Proc. Natl. Acad. Sci. U.S.A. 117 (39) 24359-24368 [2020-09-16; online 2020-09-16]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Transcriptome analysis of EPO and GFP HEK293 Cell-lines Reveal Shifts in Energy and ER Capacity Support Improved Erythropoietin Production in HEK293F Cells
Saghaleyni R, Malm M, Zrimec J, ..., Robinson JL, Rockberg J
- - (-) - [2020-09-16; online 2020-09-16]
Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
PubMed DOI Crossref
Integration of molecular profiles in a longitudinal wellness profiling cohort.
Tebani A, Gummesson A, Zhong W, ..., Uhlen M, Fagerberg L
pii: 10.1038/s41467-020-18148-7
Nat Commun 11 (1) 4487 [2020-09-08; online 2020-09-08]
Autoimmunity and Serology Profiling [Collaborative] Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Mass Cytometry [Collaborative] Swedish Metabolomics Centre (SMC) [Collaborative] Translational Plasma Profiling [Collaborative]
DOI Crossref
Association between breast cancer risk and disease aggressiveness: Characterizing underlying gene expression patterns
Ugalde‐Morales E, Grassmann F, Humphreys K, ..., Hall P, Czene K
Int. J. Cancer - (-) - [2020-09-05; online 2020-09-05]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Genome sequence of segmented filamentous bacteria present in the human intestine.
Jonsson H, Hugerth LW, Sundh J, Lundin E, Andersson AF
pii: 10.1038/s42003-020-01214-7 pmc: PMC7474095
Commun Biol 3 (1) 485 [2020-09-04; online 2020-09-04]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.
Dias JM, Alekseenko Z, Jeggari A, ..., Iber D, Ericson J
pii: 6/38/eaba8196 pmc: PMC7494341
Sci Adv 6 (38) - [2020-09-00; online 2020-09-16]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure
Singh A, Nylander JAA, Schnürer A, Bongcam-Rudloff E, Müller B
Front Microbiol 11 (-) - [2020-08-27; online 2020-08-27]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Metagenome assembled-genomes reveal similar functional profiles of CPR/Patescibacteria phyla in soils.
Nascimento Lemos L, Manoharan L, William Mendes L, ..., Satler Pylro V, Tsai SM
Environ Microbiol Rep 12 (6) 651-655 [2020-08-19; online 2020-08-19]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Association between proteomics and obstructive sleep apnea phenotypes in a community-based cohort of women.
Ljunggren M, Theorell-Haglöw J, Freyhult E, ..., Janson C, Lindberg E
J Sleep Res 29 (4) e13041 [2020-08-00; online 2020-04-08]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros
Lord E, Dussex N, Kierczak M, ..., Götherström A, Dalén L
Current Biology 30 (19) 3871-3879.e7 [2020-08-00; online 2020-08-00]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Prototypical pacemaker neurons interact with the resident microbiota.
Klimovich A, Giacomello S, Björklund Å, ..., Adameyko I, Bosch TCG
pii: 1920469117 pmc: PMC7395494
Proc. Natl. Acad. Sci. U.S.A. 117 (30) 17854-17863 [2020-07-28; online 2020-07-09]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
A framework to assess the quality and impact of bioinformatics training across ELIXIR
Gurwitz KT, Singh Gaur P, Bellis LJ, ..., Morgan SL, Rustici G
PLoS Comput. Biol. 16 (7) e1007976 [2020-07-23; online 2020-07-23]
Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training
PubMed DOI Crossref
Epigenome-wide cross-tissue correlation of human bone and blood DNA methylation - can blood be used as a surrogate for bone?
Ebrahimi P, Luthman H, McGuigan FE, Akesson KE
Epigenetics - (-) 1-14 [2020-07-21; online 2020-07-21]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Analysis of DNA methylation patterns in the tumor immune microenvironment of metastatic melanoma
Mitra S, Lauss M, Cabrita R, ..., Brown KM, Jönsson G
Mol Oncol 14 (5) 933-950 [2020-05-00; online 2020-03-21]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Building blocks are synthesized on demand during the yeast cell cycle
Campbell K, Westholm J, Kasvandik S, ..., Mormino M, Nielsen J
Proc Natl Acad Sci USA 117 (14) 7575-7583 [2020-04-07; online 2020-03-25]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
DOI Crossref
Guidelines for curriculum and course development in higher education and training
Tractenberg RE, Lindvall JM, Attwood T, Via A
- - (-) - [2020-04-03; online 2020-04-03]
Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training
DOI Crossref
Comparative analysis of genome-wide DNA methylation in Neurospora
Hosseini S, Meunier C, Nguyen D, Reimegård J, Johannesson H
Epigenetics 15 (9) 1-16 [2020-03-31; online 2020-03-31]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
An atlas of human metabolism.
Robinson JL, Kocabaş P, Wang H, ..., Uhlén M, Nielsen J
pii: 13/624/eaaz1482 pmc: PMC7331181 mid: NIHMS1590510
Sci Signal 13 (624) - [2020-03-24; online 2020-03-24]
Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
DOI Crossref
Footprints of natural selection at the mannose-6-phosphate isomerase locus in barnacles
Nunez JCB, Flight PA, Neil KB, ..., Blomberg A, Rand DM
Proc Natl Acad Sci USA 117 (10) 201918232 [2020-02-25; online 2020-02-25]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Extensive dissemination and intraclonal maturation of HIV Env vaccine-induced B cell responses
Phad GE, Pushparaj P, Tran K, ..., Wyatt RT, Karlsson Hedestam GB
J. Exp. Med. 217 (2) - [2020-02-03; online 2019-11-08]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants
Garcia M, Juhos S, Larsson M, ..., Käller M, Nystedt B
F1000Res 9 (-) 63 [2020-01-29; online 2020-01-29]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] Clinical Genomics Stockholm [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Transcriptomic profiling of skeletal muscle adaptations to exercise and inactivity.
Pillon NJ, Gabriel BM, Dollet L, ..., Krook A, Zierath JR
pii: 10.1038/s41467-019-13869-w pmc: PMC6981202
Nat Commun 11 (1) 470 [2020-01-24; online 2020-01-24]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
DNA methylation changes in Down syndrome derived neural iPSCs uncover co-dysregulation of ZNF and HOX3 families of transcription factors.
Laan L, Klar J, Sobol M, ..., Schuster J, Dahl N
pii: 10.1186/s13148-019-0803-1 pmc: PMC6950999
Clin Epigenetics 12 (1) 9 [2020-01-08; online 2020-01-08]
Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Year 2019

PubMed DOI Crossref
A Comprehensive Sequencing-Based Analysis of Allelic Methylation Patterns in Hemostatic Genes in Human Liver
Olsson Lindvall M, Davila Lopez M, Klasson S, ..., Stanne TM, Jern C
Thromb. Haemost. 120 (02) 229-242 [2019-12-30; online 2019-12-30]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]
PubMed DOI Crossref
Gene transfer across species boundaries in bryophytes: evidence from major life cycle stages in Homalothecium lutescens and H. sericeum.
Sawangproh W, Hedenäs L, Lang AS, Hansson B, Cronberg N
pii: 5686322
Ann. Bot. - (-) - [2019-12-24; online 2019-12-24]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Consequences of past climate change and recent human persecution on mitogenomic diversity in the arctic fox
Larsson P, von Seth J, Hagen IJ, ..., Stanton DWG, Dalén L
Phil. Trans. R. Soc. B 374 (1788) 20190212 [2019-12-23; online 2019-11-04]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Gene Expression Alterations during Development of Castration-Resistant Prostate Cancer Are Detected in Circulating Tumor Cells.
Josefsson A, Larsson K, Freyhult E, Damber J, Welén K
pii: cancers12010039
Cancers (Basel) 12 (1) - [2019-12-21; online 2019-12-21]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
pii: S0092-8674(19)31282-6
Cell 179 (7) 1647-1660.e19 [2019-12-12; online 2019-12-14]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG) [Service] In Situ Sequencing (ISS) [Technology development] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Plasma Lipidome and Prediction of Type 2 Diabetes in the Population-Based Malmö Diet and Cancer Cohort
Fernandez C, Surma MA, Klose C, ..., Simons K, Melander O
Dia Care - (-) dc191199 [2019-12-08; online 2019-12-08]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats
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Astrobiology 19 (12) 1442-1458 [2019-12-01; online 2019-12-01]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
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Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Transcriptomes of Dravet syndrome iPSC derived GABAergic cells reveal dysregulated pathways for chromatin remodeling and neurodevelopment
Schuster J, Laan L, Klar J, ..., Birnir B, Dahl N
Neurobiology of Disease 132 (-) 104583 [2019-12-00; online 2019-12-00]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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TAF1, associated with intellectual disability in humans, is essential for embryogenesis and regulates neurodevelopmental processes in zebrafish
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BioImage Informatics [Collaborative] Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics Uppsala [Collaborative] Genome Engineering Zebrafish [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture
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Nat Commun 10 (1) - [2019-12-00; online 2019-04-09]
Advanced FISH Technologies [Technology development] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
DOI Crossref
Association between Copy Number Variation and Response to Social Skills Training in Autism Spectrum Disorder
Tammimies K, Li D, Rabkina I, ..., Choque-Olsson N, Bölte S
Sci Rep 9 (1) - [2019-12-00; online 2019-07-08]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data
Franco M, Jeggari A, Peuget S, ..., Selivanova G, Alexeyenko A
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Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes
Bysani M, Agren R, Davegårdh C, ..., Bacos K, Ling C
GEO: GSE129383
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Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]
PubMed DOI Crossref
Improved power and precision with whole genome sequencing data in genome-wide association studies of inflammatory biomarkers
Höglund J, Rafati N, Rask-Andersen M, ..., Ek WE, Johansson Å
Sci Rep 9 (1) - [2019-12-00; online 2019-11-14]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Whole genome DNA sequencing provides an atlas of somatic mutagenesis in healthy human cells and identifies a tumor-prone cell type
Franco I, Helgadottir HT, Moggio A, ..., Supek F, Eriksson M
Genome Biol. 20 (1) - [2019-12-00; online 2019-12-18]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The genomic footprint of sexual conflict.
Sayadi A, Martinez Barrio A, Immonen E, ..., Nystedt B, Arnqvist G
pii: 10.1038/s41559-019-1041-9
Nat Ecol Evol 3 (12) 1725-1730 [2019-12-00; online 2019-11-18]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Dysregulated autophagy in muscle precursor cells from humans with type 2 diabetes
Henriksen TI, Wigge LV, Nielsen J, ..., Sandri M, Scheele C
Sci Rep 9 (1) - [2019-12-00; online 2019-06-03]
Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
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Breast cancer quantitative proteome and proteogenomic landscape
Johansson HJ, None , Socciarelli F, ..., Børresen-Dale AL, Lehtiö J
Nat Commun 10 (1) - [2019-12-00; online 2019-04-08]
Advanced Light Microscopy (ALM) [Service] Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Proteogenomics [Technology development]
PubMed DOI Crossref
Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing
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Genome Biol. 20 (1) - [2019-12-00; online 2019-04-01]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Towards a standardized bioinformatics infrastructure for N- and O-glycomics
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Nat Commun 10 (1) - [2019-12-00; online 2019-07-22]
Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] Glycoproteomics [Technology development]
DOI Crossref
Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development
Tiklová K, Björklund ÅK, Lahti L, ..., Parmar M, Perlmann T
GEO: GSE116138
Nat Commun 10 (1) - [2019-12-00; online 2019-02-04]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] In Situ Sequencing (ISS) [Collaborative]
PubMed DOI Crossref
From cytogenetics to cytogenomics: whole-genome sequencing as a first-line test comprehensively captures the diverse spectrum of disease-causing genetic variation underlying intellectual disability
Lindstrand A, Eisfeldt J, Pettersson M, ..., Lundin J, Nilsson D
Genome Med 11 (1) 68 [2019-12-00; online 2019-11-07]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Stockholm [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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The Mastery Rubric for Bioinformatics: A tool to support design and evaluation of career-spanning education and training.
Tractenberg RE, Lindvall JM, Attwood TK, Via A
pii: PONE-D-19-15839 pmc: PMC6879125
PLoS ONE 14 (11) e0225256 [2019-11-26; online 2019-11-26]
Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]
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Optimizing cultivation of Cordyceps militaris for fast growth and cordycepin overproduction using rational design of synthetic media
Raethong N, Wang H, Nielsen J, Vongsangnak W
Computational and Structural Biotechnology Journal 18 (-) 1-8 [2019-11-26]
Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
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TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells
Joshi RN, Stadler C, Lehmann R, ..., Schmidt A, Vesterlund M
Front Immunol 10 (-) - [2019-11-26; online 2019-11-26]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Cell Profiling [Collaborative] Proteogenomics [Technology development]
PubMed DOI Crossref
Lithium treatment reverses irradiation-induced changes in rodent neural progenitors and rescues cognition.
Zanni G, Goto S, Fragopoulou AF, ..., Hermanson O, Blomgren K
pii: 10.1038/s41380-019-0584-0
Mol. Psychiatry - (-) - [2019-11-14; online 2019-11-14]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Daytime melatonin levels in saliva are associated with inflammatory markers and anxiety disorders.
Sundberg I, Rasmusson AJ, Ramklint M, ..., Ekselius L, Cunningham JL
pii: S0306-4530(19)31255-7
Psychoneuroendocrinology 112 (-) 104514 [2019-11-14; online 2019-11-14]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Biomarkers [Service]
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On-demand virtual research environments using microservices
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Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Leveraging European infrastructures to access 1 million human genomes by 2022.
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Nat. Rev. Genet. 20 (11) 693-701 [2019-11-00; online 2019-08-27]
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The architecture of the Plasmodiophora brassicae nuclear and mitochondrial genomes.
Stjelja S, Fogelqvist J, Tellgren-Roth C, Dixelius C
pii: 10.1038/s41598-019-52274-7 pmc: PMC6823432
Sci Rep 9 (1) 15753 [2019-10-31; online 2019-10-31]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Assembly and Analysis of the Genome Sequence of the Yeast Brettanomyces naardenensis CBS 7540.
Tiukova IA, Jiang H, Dainat J, ..., Gu Z, Passoth V
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Microorganisms 7 (11) - [2019-10-26; online 2019-10-26]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
DOI Crossref
Transcriptomic Profiling of Skeletal Muscle Adaptations to Exercise and Inactivity
Pillon NJ, Gabriel BM, Dollet L, ..., Krook A, Zierath JR
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Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Genes and variants in hematopoiesis-related pathways are associated with gemcitabine/carboplatin-induced thrombocytopenia.
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Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Interoperable and scalable data analysis with microservices: applications in metabolomics
Emami Khoonsari P, Moreno P, Bergmann S, ..., Kultima K, Spjuth O
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Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Dissecting the Effects of Selection and Mutation on Genetic Diversity in Three Wood White (Leptidea) Butterfly Species.
Talla V, Soler L, Kawakami T, ..., Wiklund C, Backström N
pii: 5580498 pmc: PMC6795238
Genome Biol Evol 11 (10) 2875-2886 [2019-10-01; online 2019-10-04]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species
Kurland S, Wheat CW, Paz Celorio Mancera M, ..., Ryman N, Laikre L
Ecol Evol 9 (19) 11448-11463 [2019-10-00; online 2019-09-26]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Industrial wastewater treatment plant enriches antibiotic resistance genes and alters the structure of microbial communities
Bengtsson-Palme J, Milakovic M, Švecová H, ..., Grabic R, Udikovic-Kolic N
Water Research 162 (-) 437-445 [2019-10-00; online 2019-10-00]
Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
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Clinical candidate and genistein analogue AXP107-11 has chemoenhancing functions in pancreatic adenocarcinoma through G protein-coupled estrogen receptor signaling.
Mesmar F, Dai B, Ibrahim A, ..., Fleming J, Williams C
Cancer Med - (-) - [2019-09-30; online 2019-09-30]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota
Manoharan L, Kozlowski JA, Murdoch RW, ..., Sousa FL, Schleper C
MBio 10 (5) - [2019-09-10; online 2019-09-10]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Genome Sequencing of Pleurozium schreberi: The Assembled and Annotated Draft Genome of a Pleurocarpous Feather Moss.
Pederson ERA, Warshan D, Rasmussen U
pii: g3.119.400279 pmc: PMC6723128 figshare: 10.6084/m9.figshare.7775951
G3 (Bethesda) 9 (9) 2791-2797 [2019-09-04; online 2019-09-04]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The bio.tools registry of software tools and data resources for the life sciences.
Ison J, Ienasescu H, Chmura P, ..., Løngreen P, Brunak S
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Genome Biol. 20 (1) 164 [2019-08-12; online 2019-08-12]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Lack of gene flow: Narrow and dispersed differentiation islands in a triplet of Leptidea butterfly species
Talla V, Johansson A, Dincă V, ..., Wiklund C, Backström N
ENA: PRJEB21838
Mol Ecol 28 (6) 3756-3770 [2019-08-08; online 2019-08-08]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Evolved for success in novel environments: The round goby genome
Adrian-Kalchhauser I, Blomberg A, Larsson T, ..., Schloissnig S, Winkler S
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Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files
Wik E, Olin H, Haughey C, Klasson L, Dainat J
JOSS 4 (39) 1344 [2019-07-07; online 2019-07-07]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Single cell analysis of autism patient with bi-allelic NRXN1-alpha deletion reveals skewed fate choice in neural progenitors and impaired neuronal functionality
Lam M, Moslem M, Bryois J, ..., Sullivan PF, Falk A
Experimental Cell Research 383 (1) 111469 [2019-07-00; online 2019-07-00]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Hemostatic Genes Exhibit a High Degree of Allele-Specific Regulation in Liver.
Olsson Lindvall M, Hansson L, Klasson S, ..., Jern C, Stanne TM
Thromb. Haemost. 119 (7) 1072-1083 [2019-07-00; online 2019-04-29]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]
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Comment on 'AIRE-deficient patients harbor unique high-affinity disease-ameliorating autoantibodies'.
Landegren N, Rosen LB, Freyhult E, ..., Anderson M, Kämpe O
pii: 43578 pmc: PMC6597240
Elife 8 (-) - [2019-06-27; online 2019-06-27]
Autoimmunity and Serology Profiling [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis
Lundmark A, Hu YOO, Huss M, ..., Andersson AF, Yucel-Lindberg T
Front. Cell. Infect. Microbiol. 9 (-) - [2019-06-21; online 2019-06-21]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Shotgun Environmental DNA, Pollen, and Macrofossil Analysis of Lateglacial Lake Sediments From Southern Sweden
Parducci L, Alsos IG, Unneberg P, ..., Slotte T, Wohlfarth B
Front. Ecol. Evol. 7 (-) 189 [2019-06-20; online 2019-06-20]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Single-nuclei transcriptomic analysis of the subthalamic nucleus reveals different Pitx2-positive subpopulations
Papathanou M, Björklund ÅK, Martis-Thiele MM, Wallén-Mackenzie Å
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Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Microbiota data from low biomass milk samples is markedly affected by laboratory and reagent contamination
Dahlberg J, Sun L, Persson Waller K, ..., Agenäs S, Dicksved J
PLoS ONE 14 (6) e0218257 [2019-06-13; online 2019-06-13]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines
Lampa S, Dahlö M, Alvarsson J, Spjuth O
Gigascience 8 (5) - [2019-05-01; online 2019-04-26]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]
PubMed DOI Crossref
Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis.
Tiukova IA, Pettersson ME, Hoeppner MP, ..., Söderberg J, Passoth V
pii: PONE-D-18-32895 pmc: PMC6493715
PLoS ONE 14 (5) e0215077 [2019-05-01; online 2019-05-01]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Software engineering for scientific big data analysis
Grüning BA, Lampa S, Vaudel M, Blankenberg D
Gigascience 8 (5) - [2019-05-01; online 2019-05-23]
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PubMed DOI Crossref
PKCζ facilitates lymphatic metastatic spread of prostate cancer cells in a mice xenograft model
Zang G, Mu Y, Gao L, Bergh A, Landström M
Oncogene 38 (22) 4215-4231 [2019-05-00; online 2019-01-31]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Gene expression profile of extraocular muscles following resection strabismus surgery
Rodríguez MA, Sandgren Hochhard K, Vicente A, Liu JX, Pedrosa Domellöf F
Experimental Eye Research 182 (-) 182-193 [2019-05-00; online 2019-05-00]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Pervasive hybridizations in the history of wheat relatives.
Glémin S, Scornavacca C, Dainat J, ..., David J, Ranwez V
pii: aav9188 pmc: PMC6494498
Sci Adv 5 (5) eaav9188 [2019-05-00; online 2019-05-01]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Somatic mutation that affects transcription factor binding upstream of CD55 in the temporal cortex of a late-onset Alzheimer disease patient
Helgadottir HT, Lundin P, Wallén Arzt E, ..., Graff C, Eriksson M
Hum Mol Genet 28 (16) 2675-2685 [2019-04-24; online 2019-04-24]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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The complex barnacle perfume: identification of waterborne pheromone homologues in Balanus improvisus and their differential expression during settlement
Abramova A, Lind U, Blomberg A, Rosenblad MA
Biofouling 35 (4) 416-428 [2019-04-21; online 2019-05-30]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions
Sobol M, Klar J, Laan L, ..., Falk A, Dahl N
Mol Neurobiol 56 (10) 7113-7127 [2019-04-13; online 2019-04-13]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]
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The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences
Drysdale R, Cook CE, Petryszak R, ..., McEntyre J, None
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Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis
Vázquez Bernat N, Corcoran M, Hardt U, ..., Martin M, Karlsson Hedestam GB
Front Immunol 10 (-) - [2019-04-05; online 2019-04-05]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Single-molecule genome assembly of the BasketWillow, Salix viminalis, reveals earliest stages of sex chromosome expansion
Almeida P, Proux-Wera E, Churcher A, ..., Berlin S, Mank JE
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Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis
Rentoft M, Svensson D, Sjödin A, ..., Melin BS, Johansson E
PLoS ONE 14 (3) e0213350 [2019-03-27; online 2019-03-27]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]
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Helicase/SUMO-targeted ubiquitin ligase Uls1 interacts with the Holliday junction resolvase Yen1
Bauer SL, Chen J, Åström SU
PLoS ONE 14 (3) e0214102 [2019-03-21; online 2019-03-21]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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An ABCA4 loss-of-function mutation causes a canine form of Stargardt disease
Mäkeläinen S, Gòdia M, Hellsand M, ..., Andersson G, Bergström TF
PLoS Genet. 15 (3) e1007873 [2019-03-19; online 2019-03-19]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Pax6 and KDM5C co-occupy a subset of developmentally critical genes including Notch signaling regulators in neural progenitors
Gaudenzi G, Dethlefsen O, Walfridsson J, Hermanson O
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Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
The Interactome of Palmitoyl-Protein Thioesterase 1 (PPT1) Affects Neuronal Morphology and Function
Sapir T, Segal M, Grigoryan G, ..., Segal M, Reiner O
Front Cell Neurosci 13 (-) - [2019-03-13; online 2019-03-13]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard
Andrade P, Pinho C, Pérez i de Lanuza G, ..., Andersson L, Carneiro M
Proc Natl Acad Sci USA - (-) 201820320 [2019-02-28; online 2019-02-28]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Rostania revised: testing generic delimitations in Collemataceae (Peltigerales, Lecanoromycetes)
Košuthová A, Westberg M, Otálora MAG, Wedin M
MycoKeys 47 (-) 17-33 [2019-02-20; online 2019-02-20]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Plasma Profiles of Inflammatory Markers Associated With Active Tuberculosis in Antiretroviral Therapy-Naive Human Immunodeficiency Virus-Positive Individuals
Olsson O, Björkman P, Jansson M, ..., Carlsson F, Skogmar S
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Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Ultrasensitive immunoprofiling of plasma extracellular vesicles identifies syndecan-1 as a potential tool for minimally invasive diagnosis of glioma.
Indira Chandran V, Welinder C, Månsson AS, ..., Sundgren PC, Belting M
pii: 1078-0432.CCR-18-2946
Clin. Cancer Res. - (-) - [2019-01-24; online 2019-01-24]
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Transformation of mature mouse B cells into malignant plasma cells in vitro via introduction of defined genetic elements.
Högstrand K, Lindvall JM, Sundblad A, Grandien A
Eur. J. Immunol. - (-) - [2019-01-21; online 2019-01-21]
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The genetic diversity and evolution of diatom-diazotroph associations highlights traits favoring symbiont integration.
Caputo A, Nylander JAA, Foster RA
pii: 5281432
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DOI Crossref
Targeted Delivery of Stk25 Antisense Oligonucleotides to Hepatocytes Protects Mice Against Nonalcoholic Fatty Liver Disease
Cansby E, Nuñez-Durán E, Magnusson E, ..., Aghajan M, Mahlapuu M
Cellular and Molecular Gastroenterology and Hepatology 7 (3) 597-618 [2019-00-00; online 2019-00-00]
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Year 2018

DOI Crossref
Zebrafish larvae as a model system for systematic characterization of drugs and genes in dyslipidemia and atherosclerosis
Bandaru MK, Emmanouilidou A, Ranefall P, ..., Ingelsson E, den Hoed M
- - (-) - [2018-12-20; online 2018-12-20]
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PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud.
Peters K, Bradbury J, Bergmann S, ..., Zanetti G, Steinbeck C
pii: 5232984
Gigascience - (-) - [2018-12-07; online 2018-12-07]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Transcriptional and Epigenetic Changes Influencing Skeletal Muscle Metabolism in Women With Polycystic Ovary Syndrome.
Nilsson E, Benrick A, Kokosar M, ..., Ling C, Stener-Victorin E
pii: 5063490
J. Clin. Endocrinol. Metab. 103 (12) 4465-4477 [2018-12-01; online 2018-08-17]
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Impact of forced fatty acid synthesis on metabolism and physiology of Saccharomyces cerevisiae.
Gossing M, Smialowska A, Nielsen J
pii: 5086656
FEMS Yeast Res. 18 (8) - [2018-12-01; online 2018-09-01]
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A major locus controls local adaptation and adaptive life history variation in a perennial plant
Wang J, Ding J, Tan B, ..., Street NR, Ingvarsson PK
SRA: PRJNA297202
Genome Biol. 19 (1) - [2018-12-00; online 2018-06-04]
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Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow
Zhu Y, Orre LM, Johansson HJ, ..., Branca RMM, Lehtiö J
EBI: PXD006291 EBI: E-MTAB-5285 EBI: E-MTAB-2836
Nat Commun 9 (1) - [2018-12-00; online 2018-03-02]
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EMBLmyGFF3: a converter facilitating genome annotation submission to European Nucleotide Archive
Norling M, Jareborg N, Dainat J
BMC Res Notes 11 (1) - [2018-12-00; online 2018-08-13]
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Somatic mutagenesis in satellite cells associates with human skeletal muscle aging
Franco I, Johansson A, Olsson K, ..., Fischer H, Eriksson M
Nat Commun 9 (1) - [2018-12-00; online 2018-02-23]
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RNA-sequencing reveals long-term effects of silver nanoparticles on human lung cells
Gliga AR, Di Bucchianico S, Lindvall J, Fadeel B, Karlsson HL
ArrayExpress: E-MTAB-6321 ArrayExpress: E-MTAB-6331
Sci Rep 8 (1) - [2018-12-00; online 2018-04-27]
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Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
Bartoschek M, Oskolkov N, Bocci M, ..., Björklund Å, Pietras K
Nat Commun 9 (1) - [2018-12-00; online 2018-12-04]
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PubMed DOI Crossref
Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome
Sork H, Corso G, Krjutskov K, ..., Mäger I, EL Andaloussi S
BioProject: PRJNA408072 SRA: SRP118970
Sci Rep 8 (1) - [2018-12-00; online 2018-07-17]
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A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons
Södersten E, Toskas K, Rraklli V, ..., Perlmann T, Holmberg J
GEO: GSE107656
Nat Commun 9 (1) - [2018-12-00; online 2018-03-26]
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DOI Crossref
Modelling of zero-inflation improves inference of metagenomic gene count data
Jonsson V, Österlund T, Nerman O, Kristiansson E
Stat Methods Med Res - (-) 096228021881135 [2018-11-25; online 2018-11-25]
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Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere
Lopez-Fernandez M, Simone D, Wu X, ..., Bertilsson S, Dopson M
MBio 9 (6) - [2018-11-20; online 2018-11-20]
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Protein profiling of fine-needle aspirates reveals subtype-associated immune signatures and involvement of chemokines in breast cancer.
Franzén B, Alexeyenko A, Kamali-Moghaddam M, ..., Landegren U, Lewensohn R
Mol Oncol 13 (2) 376-391 [2018-11-19; online 2018-11-19]
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Expression profiling and in situ screening of circular RNAs in human tissues.
Zaghlool A, Ameur A, Wu C, ..., Nilsson M, Feuk L
pii: 10.1038/s41598-018-35001-6
Sci Rep 8 (1) 16953 [2018-11-16; online 2018-11-16]
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Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies
Akhter S, Kretzschmar WW, Nordal V, ..., Emanuelsson O, Sundström JF
Front Plant Sci 9 (-) - [2018-11-13; online 2018-11-13]
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Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis
Falcão AM, van Bruggen D, Marques S, ..., Guerreiro-Cacais AO, Castelo-Branco G
GEO: GSE113973
Nat Med - (-) - [2018-11-12; online 2018-11-12]
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Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
Lin YC, Wang J, Delhomme N, ..., Ingvarsson PK, Street NR
European Nucleotide Archive: PRJEB23585 PlantGenie.org: pnas201801437
Proc Natl Acad Sci USA - (-) 201801437 [2018-10-29; online 2018-10-29]
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Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays
Giacomello S, Lundeberg J
Nat Protoc - (-) - [2018-10-23; online 2018-10-23]
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RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
Wang H, Marcišauskas S, Sánchez BJ, ..., Nielsen J, Kerkhoven EJ
PLoS Comput. Biol. 14 (10) e1006541 [2018-10-18; online 2018-10-18]
Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
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Transcriptomic and genomic profiling of early-stage ovarian carcinomas associated with histotype and overall survival.
Engqvist H, Parris TZ, Rönnerman EW, ..., Karlsson P, Helou K
pii: 26225 pmc: PMC6205557
Oncotarget 9 (80) 35162-35180 [2018-10-12; online 2018-10-12]
Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Service]
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De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data
Ameur A, Che H, Martin M, ..., Feuk L, Gyllensten U
Genes 9 (10) 486 [2018-10-09; online 2018-10-09]
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NormalyzerDE: Online tool for improved normalization of omics expression data and high-sensitivity differential expression analysis.
Willforss J, Chawade A, Levander F
J. Proteome Res. - (-) - [2018-10-02; online 2018-10-02]
Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]
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Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia
Gunnarsson R, Dilorenzo S, Lundin-Ström KB, ..., Isaksson A, Johansson B
EGA: EGAS00001001795
Leukemia 32 (10) 2117-2125 [2018-10-00; online 2018-03-12]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Methanogens and Iron-Reducing Bacteria: the Overlooked Members of Mercury-Methylating Microbial Communities in Boreal Lakes
Bravo AG, Peura S, Buck M, ..., Björn E, Bertilsson S
Appl Environ Microbiol 84 (23) - [2018-09-21; online 2018-11-15]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.
Vetukuri RR, Tripathy S, Malar C M, ..., Grenville-Briggs LJ, Whisson SC
pii: 5061551 pmc: PMC6152947
Genome Biol Evol 10 (9) 2432-2442 [2018-09-01; online 2018-09-01]
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Autosomal Recessive Osteogenesis Imperfecta Caused by a Novel Homozygous COL1A2 Mutation
Costantini A, Tournis S, Kämpe A, ..., Doulgeraki A, Mäkitie O
Calcif Tissue Int 103 (3) 353-358 [2018-09-00; online 2018-03-23]
Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A fine-needle aspiration-based protein signature discriminates benign from malignant breast lesions
Franzén B, Kamali-Moghaddam M, Alexeyenko A, ..., Landegren U, Lewensohn R
Mol Oncol 12 (9) 1415-1428 [2018-09-00; online 2018-08-09]
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Sequentially acting SOX proteins orchestrate astrocyte‐ and oligodendrocyte‐specific gene expression
Klum S, Zaouter C, Alekseenko Z, ..., Muhr J, Bergsland M
EMBO Rep. - (-) e46635 [2018-08-30; online 2018-08-30]
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Exploratory Profiling of Urine MicroRNAs in the dy Mouse Model of LAMA2-CMD: Relation to Disease Progression.2J/dy2J
Moreira Soares Oliveira B, Gawlik KI, Durbeej M, Holmberg J
pmc: PMC6140833
PLoS Curr 10 (-) - [2018-08-27; online 2018-08-27]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Life history of Parnips and the evolutionary origin of gall wasps
Ronquist F, Nylander JAA, Vårdal H, Nieves-Aldrey JL
JHR 65 (-) 91-110 [2018-08-27; online 2018-08-27]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Global characterization of the Dicer-like protein DrnB roles in miRNA biogenesis in the social amoeba Dictyostelium discoideum.
Liao Z, Kjellin J, Hoeppner MP, Grabherr M, Söderbom F
pmc: PMC6161686
RNA Biol 15 (7) 937-954 [2018-08-21; online 2018-08-21]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development.
Marques S, van Bruggen D, Vanichkina DP, ..., Taft RJ, Castelo-Branco G
pii: S1534-5807(18)30558-6 pmc: PMC6104814 GEO: GSE95194 GEO: GSE95093
Dev. Cell 46 (4) 504-517.e7 [2018-08-20; online 2018-08-02]
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PubMed DOI Crossref
Novel Autotrophic Organisms Contribute Significantly to the Internal Carbon Cycling Potential of a Boreal Lake
Peura S, Buck M, Aalto SL, ..., Nykänen H, Eiler A
SRA: SRP076290
MBio 9 (4) - [2018-08-14; online 2018-08-14]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Reduction in White Blood Cell, Neutrophil and Red Blood Cell counts Related to Gender, HLA and Islet Autoantibodies in Swedish TEDDY Children at Increased Risk for Type 1 Diabetes
Salami F, Lee HS, Freyhult E, ..., Lernmark Å, Törn C
Diabetes - (-) db180355 [2018-08-13; online 2018-08-13]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR-Cas9-based approach
von der Heyde B, Emmanouilidou A, Klingström T, ..., Brooke HL, den Hoed M
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Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems.
Hu YOO, Ndegwa N, Alneberg J, ..., Fagerberg J, Andersson AF
pii: 10.1038/s41598-018-29920-7 pmc: PMC6085348 European Nucleotide Archive: PRJEB20562
Sci Rep 8 (1) 11907 [2018-08-09; online 2018-08-09]
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PubMed DOI Crossref
Clonal relatedness in tumour pairs of breast cancer patients.
Biermann J, Parris TZ, Nemes S, ..., Karlsson P, Helou K
pii: 10.1186/s13058-018-1022-y GEO: GSE97293 GEO: GSE97177
Breast Cancer Res. 20 (1) 96 [2018-08-09; online 2018-08-09]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comprehensive RNA sequencing analysis in serum and muscle reveals novel small RNA signatures with biomarker potential for Duchenne Muscular Dystrophy
Coenen-Stass AML, Sork H, Gatto S, ..., Wood MJA, Roberts TC
SRA: SRP102619
Mol Ther Nucleic Acids - (-) - [2018-08-00; online 2018-08-00]
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PubMed DOI Crossref
Delineating closely related dinoflagellate lineages using phylotranscriptomics.
Annenkova NV, Ahrén D, Logares R, Kremp A, Rengefors K
J. Phycol. 54 (4) 571-576 [2018-08-00; online 2018-06-13]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Plasma Protein Profiling Reveal Osteoprotegerin as a Marker of Prognostic Impact for Colorectal Cancer
Birgisson H, Tsimogiannis K, Freyhult E, Kamali-Moghaddam M
Transl Oncol 11 (4) 1034-1043 [2018-08-00; online 2018-08-00]
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PubMed DOI Crossref
Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans
Cedernaes J, Schönke M, Westholm JO, ..., Zierath JR, Benedict C
Sci Adv 4 (8) eaar8590 [2018-08-00; online 2018-08-22]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments
Andermann T, Cano Á, Zizka A, Bacon C, Antonelli A
SRA: SRP131660 Zenodo: 10.5281/zenodo.1162653
PeerJ 6 (-) e5175 [2018-07-13; online 2018-07-13]
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PubMed DOI Crossref
EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.
Jeggari A, Alekseenko Z, Petrov I, ..., Ericson J, Alexeyenko A
pii: 5035166 pmc: PMC6030852 GEO: GSE112698
Nucleic Acids Res. 46 (W1) W163-W170 [2018-07-02; online 2018-06-13]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Bioconda: sustainable and comprehensive software distribution for the life sciences
Grüning B, Dale R, Sjödin A, ..., Valieris R, Köster J
Nat Methods 15 (7) 475-476 [2018-07-00; online 2018-07-02]
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Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria.
Garcia SL, Buck M, Hamilton JJ, ..., McMahon KD, Eiler A
pii: 3/3/e00202-18 pmc: PMC5976882
mSphere 3 (3) - [2018-06-27; online 2018-05-30]
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PubMed DOI Crossref
Topology of membrane proteins — predictions, limitations and variations
Tsirigos KD, Govindarajan S, Bassot C, ..., Shu N, Elofsson A
Current Opinion in Structural Biology 50 (-) 9-17 [2018-06-00; online 2018-06-00]
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PubMed DOI Crossref
Testis transcriptome alterations in zebrafish (Danio rerio) with reduced fertility due to developmental exposure to 17α-ethinyl estradiol
Porseryd T, Reyhanian Caspillo N, Volkova K, ..., Olsson PE, Porsch-Hällström I
General and Comparative Endocrinology 262 (-) 44-58 [2018-06-00; online 2018-06-00]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
SWI/SNF regulates half of its targets without the need of ATP-driven nucleosome remodeling by Brahma.
Jordán-Pla A, Yu S, Waldholm J, ..., Östlund Farrants AK, Visa N
pii: 10.1186/s12864-018-4746-2 pmc: PMC5960078 GEO: GSE95236
BMC Genomics 19 (1) 367 [2018-05-18; online 2018-05-18]
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PubMed DOI Crossref
Transcriptomic analysis of the harvested endothelial cells in a swine model of mechanical thrombectomy.
Jaff N, Grankvist R, Muhl L, ..., Eriksson U, Holmin S
pii: 10.1007/s00234-018-2033-1 pmc: PMC5995995
Neuroradiology - (-) - [2018-05-14; online 2018-05-14]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Modulation of gene transcription and epigenetics of colon carcinoma cells by bacterial membrane vesicles.
Vdovikova S, Gilfillan S, Wang S, ..., Wai SN, Hurtado A
pii: 10.1038/s41598-018-25308-9 pmc: PMC5943334
Sci Rep 8 (1) 7434 [2018-05-09; online 2018-05-09]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Array profiling reveals contribution of Cthrc1 to growth of the denervated rat urinary bladder.
Zhu B, Ekman M, Svensson D, ..., Uvelius B, Swärd K
Am. J. Physiol. Renal Physiol. 314 (5) F893-F905 [2018-05-01; online 2018-01-10]
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O6-methylguanine–induced transcriptional mutagenesis reduces p53 tumor-suppressor function
Ezerskyte M, Paredes JA, Malvezzi S, ..., Scicchitano DA, Dreij K
pii: 1721764115
Proc. Natl. Acad. Sci. U.S.A. 115 (18) 4731-4736 [2018-05-01; online 2018-04-17]
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Mitochondrial Translation Efficiency Controls Cytoplasmic Protein Homeostasis
Suhm T, Kaimal JM, Dawitz H, ..., Andréasson C, Ott M
Cell Metabolism - (-) - [2018-05-00; online 2018-05-00]
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Expression of scavenger receptor MARCO defines a targetable tumor-associated macrophage subset in non-small cell lung cancer.
La Fleur L, Boura VF, Alexeyenko A, ..., Karlsson MCI, Botling J
Int. J. Cancer - (-) - [2018-04-18; online 2018-04-18]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics Uppsala [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Evaluation of the ISL1 gene in the pathogenesis of bladder exstrophy in a Swedish cohort.
Arkani S, Cao J, Lundin J, ..., Matsson H, Nordenskjöld A
pmc: PMC5874392 ArrayExpress: E-MTAB-5143
Hum Genome Var 5 (-) 18009 [2018-03-29; online 2018-03-29]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome
Ramqvist T, Näsman A, Franzén B, ..., Dalianis T, Munck-Wikland E
Int J Mol Sci 19 (4) 978 [2018-03-25; online 2018-03-25]
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Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases
Bravo AG, Zopfi J, Buck M, ..., Poté J, Cosio C
BioProject: PRJEB20838
ISME J 12 (3) 802-812 [2018-03-00; online 2018-01-10]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Nubbin isoform antagonism governs Drosophila intestinal immune homeostasis.
Lindberg BG, Tang X, Dantoft W, ..., Lindvall JM, Engström Y
pii: PPATHOGENS-D-17-02350 pmc: PMC5851638
PLoS Pathog. 14 (3) e1006936 [2018-03-00; online 2018-03-02]
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Ten steps to get started in Genome Assembly and Annotation
Dominguez Del Angel V, Hjerde E, Sterck L, ..., Binzer-Panchal M, Lantz H
F1000Res 7 (-) 148 [2018-02-05; online 2018-02-05]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Formation of mercury methylation hotspots as a consequence of forestry operations
Eklöf K, Bishop K, Bertilsson S, ..., Kronberg RM, Bravo AG
Science of The Total Environment 613-614 (-) 1069-1078 [2018-02-00; online 2018-02-00]
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Bacterial secretion of D-arginine controls environmental microbial biodiversity.
Alvarez L, Aliashkevich A, de Pedro MA, Cava F
pii: ismej2017176 pmc: PMC5776457
ISME J 12 (2) 438-450 [2018-02-00; online 2017-10-13]
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The discovery of the virulence gene ToxA in the wheat and barley pathogen Bipolaris sorokiniana.
McDonald MC, Ahren D, Simpfendorfer S, Milgate A, Solomon PS
Mol. Plant Pathol. 19 (2) 432-439 [2018-02-00; online 2017-03-12]
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Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation.
Leal L, Talla V, Källman T, ..., Vila R, Backström N
BioProject: PRJEB24745 ArrayExpress: E‐MTAB‐6454
Mol. Ecol. 27 (4) 935-948 [2018-02-00; online 2018-02-26]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA
Ahmed E, Parducci L, Unneberg P, ..., Slotte T, Wohlfarth B
Quaternary Science Reviews 181 (-) 19-29 [2018-02-00; online 2018-02-00]
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Pulmonary fibrosis in vivo displays increased p21 expression reduced by 5-HT2B receptor antagonists in vitro - a potential pathway affecting proliferation.
Löfdahl A, Rydell-Törmänen K, Larsson-Callerfelt A, Wenglén C, Westergren-Thorsson G
pii: 10.1038/s41598-018-20430-0 pmc: PMC5792547
Sci Rep 8 (1) 1927 [2018-01-31; online 2018-01-31]
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A Single Bout of Electroacupuncture Remodels Epigenetic and Transcriptional Changes in Adipose Tissue in Polycystic Ovary Syndrome.
Kokosar M, Benrick A, Perfilyev A, ..., Ling C, Stener-Victorin E
pii: 10.1038/s41598-017-17919-5 pmc: PMC5790004
Sci Rep 8 (1) 1878 [2018-01-30; online 2018-01-30]
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A protein interaction network centered on leucine-rich repeats and immunoglobulin-like domains 1 (LRIG1) regulates growth factor receptors
Faraz M, Herdenberg C, Holmlund C, Henriksson R, Hedman H
J. Biol. Chem. - (-) jbc.M117.807487 [2018-01-09; online 2018-01-09]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]
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MicroRNA expression profiles in non‑epithelial ovarian tumors.
Chang RK, Li X, Mu N, ..., Larsson C, Lui WO
pmc: PMC5743337
Int. J. Oncol. 52 (1) 55-66 [2018-01-00; online 2017-11-10]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction.
Salvatore M, Shu N, Elofsson A
pmc: PMC5734273
Protein Sci. 27 (1) 195-201 [2018-01-00; online 2017-10-24]
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Phylogeny, species delimitation and revision of Pleioluma (Sapotaceae) in New Caledonia, a frequently gynodioecious genus
Swenson U, Nylander JAA, Munzinger J
Aust. Systematic Bot. 31 (2) 120 [2018-00-00; online 2018-00-00]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Year 2017

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Metabolome dynamics of diapause in the butterfly Pieris napi: distinguishing maintenance, termination and post-diapause phases
Lehmann P, Pruisscher P, Koštál V, ..., Wheat CW, Gotthard K
Journal of Experimental Biology - (-) - [2017-12-01; online 2017-11-27]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]
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Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration
Elewa A, Wang H, Talavera-López C, ..., Andersson B, Simon A
SRA: SRP116714 BioProject: PRJNA353981
Nat Commun 8 (1) - [2017-12-00; online 2017-12-22]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Dog ownership and the risk of cardiovascular disease and death – a nationwide cohort study
Mubanga M, Byberg L, Nowak C, ..., Ingelsson E, Fall T
Sci Rep 7 (1) - [2017-12-00; online 2017-11-17]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Mutational and putative neoantigen load predict clinical benefit of adoptive T cell therapy in melanoma
Lauss M, Donia M, Harbst K, ..., Svane IM, Jönsson G
Nat Commun 8 (1) - [2017-12-00; online 2017-11-23]
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PubMed DOI Crossref
Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea
Hüttner S, Nguyen TT, Granchi Z, ..., Thanh VN, Olsson L
Biotechnol Biofuels 10 (1) - [2017-12-00; online 2017-11-13]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study
Berghoff BA, Karlsson T, Källman T, Wagner EGH, Grabherr MG
BioData Mining 10 (1) - [2017-12-00; online 2017-09-05]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Rho-kinase inhibitor Y-27632 and hypoxia synergistically enhance chondrocytic phenotype and modify S100 protein profiles in human chondrosarcoma cells
Piltti J, Bygdell J, Fernández-Echevarría C, Marcellino D, Lammi MJ
Sci Rep 7 (1) - [2017-12-00; online 2017-06-16]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition
Amlinger L, Hoekzema M, Wagner EGH, Koskiniemi S, Lundgren M
Sci Rep 7 (1) - [2017-12-00; online 2017-09-04]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Mitogenome evolution in the last surviving woolly mammoth population reveals neutral and functional consequences of small population size
Pečnerová P, Palkopoulou E, Wheat CW, ..., Díez-del-Molino D, Dalén L
Evolution Letters - (-) - [2017-11-28; online 2017-11-28]
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Genome-Based Sexing Provides Clues about Behavior and Social Structure in the Woolly Mammoth.
Pečnerová P, Díez-Del-Molino D, Dussex N, ..., Vartanyan S, Dalén L
pii: S0960-9822(17)31264-2 BioProject: PRJEB22575
Curr. Biol. 27 (22) 3505-3510.e3 [2017-11-20; online 2017-11-02]
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Antibody Heavy Chain Variable Domains of Different Germline Gene Origins Diversify through Different Paths
Kirik U, Persson H, Levander F, Greiff L, Ohlin M
Front Immunol 8 (-) - [2017-11-13; online 2017-11-13]
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RNA-Seq de novo assembly and differential transcriptome analysis of the nematode Ascaridia galli in relation to in vivo exposure to flubendazole
Martis MM, Tarbiat B, Tydén E, Jansson DS, Höglund J
BioProject: PRJEB20558
PLoS ONE 12 (11) e0185182 [2017-11-03; online 2017-11-03]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Proteomic Analysis of Phytophthora infestans Reveals the Importance of Cell Wall Proteins in Pathogenicity
Resjö S, Brus M, Ali A, ..., Grenville-Briggs L, Andreasson E
Mol Cell Proteomics 16 (11) 1958-1971 [2017-11-00; online 2017-09-21]
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SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population.
Ameur A, Dahlberg J, Olason P, ..., Magnusson PK, Gyllensten U
pii: ejhg2017130 swefreq: swegen
Eur. J. Hum. Genet. 25 (11) 1253-1260 [2017-11-00; online 2017-08-23]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
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Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions
Hubalek V, Buck M, Tan B, ..., Bertilsson S, Eiler A
mSystems 2 (5) e00038-17 [2017-10-31; online 2017-10-31]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Effects of long-term low oxygen tension in human chondrosarcoma cells
Piltti J, Bygdell J, Qu C, Lammi MJ
J. Cell. Biochem. - (-) - [2017-10-18; online 2017-10-18]
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The Evolution of Dark Matter in the Mitogenome of Seed Beetles
Sayadi A, Immonen E, Tellgren-Roth C, Arnqvist G
GENBANK: KY856743 GENBANK: KY856744 GENBANK: KY856745 GENBANK: KY942060 GENBANK: KY942061 GENBANK: KY942062 GENBANK: MF925724
Genome Biol Evol 9 (10) 2697-2706 [2017-10-01; online 2017-09-27]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
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The cagE gene sequence as a diagnostic marker to identify JP2 and non-JP2 highly leukotoxic Aggregatibacter actinomycetemcomitans serotype b strains.
Johansson A, Claesson R, Höglund Åberg C, Haubek D, Oscarsson J
GENBANK: LT601546 GENBANK: LT601547 GENBANK: LT601548 GENBANK: AAM68959 GENBANK: AHN72937
J. Periodont. Res. 52 (5) 903-912 [2017-10-00; online 2017-04-10]
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Alterations of c-di-GMP turnover proteins modulate semi-constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli.
Cimdins A, Simm R, Li F, ..., Brauner A, Römling U
pmc: PMC5635171
Microbiologyopen 6 (5) - [2017-10-00; online 2017-09-15]
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Antibody Affinity Against 2009 A/H1N1 Influenza and Pandemrix Vaccine Nucleoproteins Differs Between Childhood Narcolepsy Patients and Controls.
Lind A, Freyhult E, Ramelius A, ..., Elding Larsson H, Lernmark Å
Viral Immunol. 30 (8) 590-600 [2017-10-00; online 2017-08-10]
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Anti-mycobacterial activity correlates with altered DNA methylation pattern in immune cells from BCG-vaccinated subjects.
Verma D, Parasa VR, Raffetseder J, ..., Netea M, Lerm M
pii: 10.1038/s41598-017-12110-2 pmc: PMC5615063
Sci Rep 7 (1) 12305 [2017-09-26; online 2017-09-26]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Genetic risk scores and family history as predictors of schizophrenia in Nordic registers.
Lu Y, Pouget JG, Andreassen OA, ..., Werge T, Sullivan PF
pii: S0033291717002665
Psychol Med - (-) 1-9 [2017-09-25; online 2017-09-25]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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The regulation of hydroxysteroid 17β-dehydrogenase type 1 and 2 gene expression in breast cancer cell lines by estradiol, dihydrotestosterone, microRNAs, and genes related to breast cancer.
Hilborn E, Stål O, Alexeyenko A, Jansson A
pii: 19136 pmc: PMC5617496
Oncotarget 8 (37) 62183-62194 [2017-09-22; online 2017-07-10]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Copper chaperone ATOX1 regulates pluripotency factor OCT4 in preimplantation mouse embryos.
Celauro E, Mukaj A, Fierro-González JC, Wittung-Stafshede P
pii: S0006-291X(17)31406-7
Biochem. Biophys. Res. Commun. 491 (1) 147-153 [2017-09-09; online 2017-07-12]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog
Montero-Mendieta S, Grabherr M, Lantz H, ..., Webster MT, Vilà C
SRA: SRP106442 GENBANK: GFNJ00000000 BioProject: PRJNA384528
PeerJ 5 (-) e3702 [2017-09-01; online 2017-09-01]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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The Huperzia selago Shoot Tip Transcriptome Sheds New Light on the Evolution of Leaves.
Evkaikina AI, Berke L, Romanova MA, ..., Pawlowski K, Voitsekhovskaja OV
pii: 4097580 pmc: PMC5622374 BioProject: PRJNA281995
Genome Biol Evol 9 (9) 2444-2460 [2017-09-01; online 2017-09-29]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Genome scale metabolic modeling of cancer
Nilsson A, Nielsen J
Metabolic Engineering 43 (-) 103-112 [2017-09-00; online 2017-09-00]
Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
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Cerium oxide nanoparticles inhibit differentiation of neural stem cells.
Gliga AR, Edoff K, Caputo F, ..., Ceccatelli S, Fadeel B
pii: 10.1038/s41598-017-09430-8 pmc: PMC5570910 ArrayExpress: E-MTAB-4398
Sci Rep 7 (1) 9284 [2017-08-24; online 2017-08-24]
Advanced Light Microscopy (ALM) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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SubCons: a new ensemble method for improved human subcellular localization predictions.
Salvatore M, Warholm P, Shu N, Basile W, Elofsson A
pii: 3603546
Bioinformatics 33 (16) 2464-2470 [2017-08-15; online 2017-04-14]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Targeted sequencing of tonsillar and base of tongue cancer and human papillomavirus positive unknown primary of the head and neck reveals prognostic effects of mutated FGFR3
Bersani C, Sivars L, Haeggblom L, ..., Ramqvist T, Dalianis T
Oncotarget - (-) - [2017-07-18; online 2017-02-09]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Analysis of aquaporins from the euryhaline barnacle Balanus improvisus reveals differential expression in response to changes in salinity.
Lind U, Järvå M, Alm Rosenblad M, ..., Hedfalk K, Blomberg A
pii: PONE-D-17-05123 pmc: PMC5513457 GENBANK: KY508284 GENBANK: KY508285 GENBANK: KY508286 GENBANK: KY508287 GENBANK: KY508289 GENBANK: KY508290 GENBANK: KY508291 GENBANK: KY508292 GENBANK: KY508288 GENBANK: KY508293 GENBANK: KY508294 GENBANK: KY508295 GENBANK: KY508296 GENBANK: KY508297 GENBANK: KY508298
PLoS ONE 12 (7) e0181192 [2017-07-17; online 2017-07-17]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Identifying Bird Remains Using Ancient DNA Barcoding
Dalén L, Lagerholm V, Nylander J, ..., Irestedt M, Stewart J
Genes 8 (6) 169 [2017-06-21; online 2017-06-21]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Systems Biology of Metabolism
Nielsen J
Annu. Rev. Biochem. 86 (1) 245-275 [2017-06-20; online 2017-06-20]
Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
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Protein expression in tension wood formation monitored at high tissue resolution in Populus
Bygdell J, Srivastava V, Obudulu O, ..., Mellerowicz EJ, Wingsle G
- 68 (13) 3405-3417 [2017-06-15; online 2017-06-13]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Four simple recommendations to encourage best practices in research software
Jiménez RC, Kuzak M, Alhamdoosh M, ..., Watson-Haigh NS, Crouch S
F1000Res 6 (-) 876 [2017-06-13; online 2017-06-13]
Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]
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A community proposal to integrate proteomics activities in ELIXIR
Vizcaíno JA, Walzer M, Jiménez RC, ..., Martens L, Kohlbacher O
F1000Res 6 (-) 875 [2017-06-13; online 2017-06-13]
Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]
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Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica).
Grenville-Briggs LJ, Kushwaha SK, Cleary MR, ..., Chawade A, Vetukuri RR
pii: S2213-5960(17)30097-1 pmc: PMC5435576
Genom Data 12 (-) 155-156 [2017-06-00; online 2017-05-12]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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The transcriptome of the avian malaria parasite Plasmodium ashfordi displays host-specific gene expression.
Videvall E, Cornwallis CK, Ahrén D, ..., Valkiūnas G, Hellgren O
Mol. Ecol. 26 (11) 2939-2958 [2017-06-00; online 2017-04-08]
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Lower inflammatory markers in women with antenatal depression brings the M1/M2 balance into focus from a new direction
Edvinsson Å, Bränn E, Hellgren C, ..., Cunningham JL, Sundström-Poromaa I
Psychoneuroendocrinology 80 (-) 15-25 [2017-06-00; online 2017-06-00]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Biomarkers [Service] PLA and Single Cell Proteomics [Collaborative]
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Draft Genome Sequence of the Mycoparasitic Oomycete Pythium oligandrum Strain CBS 530.74.
Kushwaha SK, Vetukuri RR, Grenville-Briggs LJ
pii: 5/21/e00346-17 pmc: PMC5477391
Genome Announc 5 (21) - [2017-05-25; online 2017-05-25]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast.
Lahtvee P, Sánchez BJ, Smialowska A, ..., Gatto F, Nielsen J
pii: S2405-4712(17)30088-1
Cell Syst 4 (5) 495-504.e5 [2017-05-24; online 2017-03-29]
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Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana
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Draft Genome Sequence of the Mycoparasitic Oomycete Pythium periplocum Strain CBS 532.74.
Kushwaha SK, Vetukuri RR, Grenville-Briggs LJ
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Jeggari A, Alexeyenko A
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Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis.
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Defining the human copper proteome and analysis of its expression variation in cancers.
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RhoA knockout fibroblasts lose tumor-inhibitory capacity in vitro and promote tumor growth in vivo.
Alkasalias T, Alexeyenko A, Hennig K, ..., Gad AK, Pavlova T
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The mitochondrial genome sequences of the round goby and the sand goby reveal patterns of recent evolution in gobiid fish.
Adrian-Kalchhauser I, Svensson O, Kutschera VE, ..., Blomberg A, Burkhardt-Holm P
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microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling network.
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Massive parallel sequencing questions the pathogenic role of missense variants in dilated cardiomyopathy.
Dalin MG, Engström PG, Ivarsson EG, ..., Andersson B, Bergo MO
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The in silico identification and characterization of a bread wheat/Triticum militinae introgression line.
Abrouk M, Balcárková B, Šimková H, ..., Doležel J, Valárik M
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Draft Genome Sequences of Semiconstitutive Red, Dry, and Rough Biofilm-Forming Commensal and Uropathogenic Escherichia coli Isolates.
Cimdins A, Lüthje P, Li F, ..., Brauner A, Römling U
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Early onset of inflammation during ontogeny of bipolar disorder: the NLRP2 inflammasome gene distinctly differentiates between patients and healthy controls in the transition between iPS cell and neural stem cell stages
Vizlin-Hodzic D, Zhai Q, Illes S, ..., Ågren H, Funa K
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NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling.
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Mol. Biol. Cell 28 (2) 346-355 [2017-01-15; online 2016-11-30]
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Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
Le Rhun A, Lécrivain AL, Reimegård J, ..., Della Beffa C, Charpentier E
Nucleic Acids Res - (-) gkw1316 [2017-01-12; online 2017-01-12]
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Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages.
Kee N, Volakakis N, Kirkeby A, ..., Parmar M, Perlmann T
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Cell Stem Cell 20 (1) 29-40 [2017-01-05; online 2016-10-27]
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Expression of Transient Receptor Potential Channels in the Purified Human Pancreatic β-Cells.
Marabita F, Islam MS
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Both maternal and offspring Elovl2 genotypes determine systemic DHA levels in perinatal mice.
Pauter AM, Trattner S, Gonzalez-Bengtsson A, ..., Dethlefsen O, Jacobsson A
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Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog.
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Year 2016

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Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity.
Corcoran MM, Phad GE, Néstor VB, ..., Martin M, Karlsson Hedestam GB
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Nat Commun 7 (-) 13642 [2016-12-20; online 2016-12-20]
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Spatial subsidies in spider diets vary with shoreline structure: Complementary evidence from molecular diet analysis and stable isotopes.
Hambäck PA, Weingartner E, Dalén L, Wirta H, Roslin T
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Ecol Evol 6 (23) 8431-8439 [2016-12-00; online 2016-10-26]
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Identification of Shared and Unique Serum Lipid Profiles in Diabetes Mellitus and Myocardial Infarction
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J Am Heart Assoc 5 (12) e004503 [2016-12-00; online 2016-11-29]
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Validation and development of MTH1 inhibitors for treatment of cancer.
Warpman Berglund U, Sanjiv K, Gad H, ..., Scobie M, Helleday T
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Ann. Oncol. 27 (12) 2275-2283 [2016-12-00; online 2016-11-08]
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Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles.
Lampa S, Alvarsson J, Spjuth O
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J Cheminform 8 (-) 67 [2016-11-24; online 2016-11-24]
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A microarray whole-genome gene expression dataset in a rat model of inflammatory corneal angiogenesis.
Mukwaya A, Lindvall JM, Xeroudaki M, ..., Jensen LD, Lagali N
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Sci Data 3 (-) 160103 [2016-11-22; online 2016-11-22]
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WhatsHap: fast and accurate read-based phasing
Martin M, Patterson M, Garg S, ..., Schoenhuth A, Marschall T
bioRxiv - (-) - [2016-11-02; online 2016-11-02]
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Deletion of FtsH11 protease has impact on chloroplast structure and function in Arabidopsis thaliana when grown under continuous light.
Wagner R, von Sydow L, Aigner H, ..., Clarke A, Funk C
Plant Cell Environ. 39 (11) 2530-2544 [2016-11-00; online 2016-08-02]
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Computational pan-genomics: status, promises and challenges.
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Brief. Bioinformatics - (-) - [2016-10-21; online 2016-10-21]
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Integrative analysis of human omics data using biomolecular networks.
Robinson JL, Nielsen J
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Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
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Massive and parallel expression profiling using microarrayed single-cell sequencing.
Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J
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Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock.
Bagnoud A, Chourey K, Hettich RL, ..., Schwyn B, Bernier-Latmani R
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ProQ3: Improved model quality assessments using Rosetta energy terms.
Uziela K, Shu N, Wallner B, Elofsson A
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Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML.
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Oncogene 35 (39) 5119-5131 [2016-09-29; online 2016-03-22]
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Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes.
Lindqvist CM, Lundmark A, Nordlund J, ..., Berglund EC, Syvänen AC
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Combinatorial identification of DNA methylation patterns over age in the human brain.
Torabi Moghadam B, Dabrowski M, Kaminska B, Grabherr MG, Komorowski J
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Bacterial associations reveal spatial population dynamics in Anopheles gambiae mosquitoes
Buck M, Nilsson LKJ, Brunius C, ..., Hopkins R, Terenius O
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The distribution of α-kleisin during meiosis in the holocentromeric plant Luzula elegans.
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The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts.
Lindholm ME, Giacomello S, Werne Solnestam B, ..., Kjellqvist S, Sundberg CJ
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Advancing the global proteome survey platform by using an oriented single chain antibody fragment immobilization approach
Säll A, Persson H, Ohlin M, Borrebaeck CAK, Wingren C
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The Adipose Transcriptional Response to Insulin Is Determined by Obesity, Not Insulin Sensitivity.
Rydén M, Hrydziuszko O, Mileti E, ..., Daub CO, Arner P
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Cell Rep 16 (9) 2317-2326 [2016-08-30; online 2016-08-23]
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Large-scale ligand-based predictive modelling using support vector machines.
Alvarsson J, Lampa S, Schaal W, ..., Wikberg JE, Spjuth O
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J Cheminform 8 (-) 39 [2016-08-10; online 2016-08-10]
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Compounds from the marine sponge Cribrochalina vasculum offer a way to target IGF-1R mediated signaling in tumor cells
Zovko A, Novak M, Hååg P, ..., Lewensohn R, Viktorsson K
Oncotarget 7 (31) 50258-50276 [2016-08-02; online 2016-07-01]
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SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and Evolution
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Transcriptomic analysis reveals how a lack of potassium ions increases Sulfolobus acidocaldarius sensitivity to pH changes.
Buetti-Dinh A, Dethlefsen O, Friedman R, Dopson M
Microbiology (Reading, Engl.) 162 (8) 1422-1434 [2016-08-00; online 2016-05-28]
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Short Chain Fatty Acids (SCFA) Reprogram Gene Expression in Human Malignant Epithelial and Lymphoid Cells.
Astakhova L, Ngara M, Babich O, ..., Ernberg I, Matskova L
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DNA Content in Extracellular Vesicles Isolated from Porcine Coronary Venous Blood Directly after Myocardial Ischemic Preconditioning.
Svennerholm K, Rodsand P, Hellman U, ..., Ronquist G, Haney M
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Systematic Analysis Reveals that Cancer Mutations Converge on Deregulated Metabolism of Arachidonate and Xenobiotics.
Gatto F, Schulze A, Nielsen J
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Cell Rep 16 (3) 878-895 [2016-07-19; online 2016-07-12]
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Peroxisome Proliferator-activated Receptor γ Coactivator-1 α Isoforms Selectively Regulate Multiple Splicing Events on Target Genes.
Martínez-Redondo V, Jannig PR, Correia JC, ..., Dahlman-Wright K, Ruas JL
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Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.
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Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis.
Lee S, Mardinoglu A, Zhang C, Lee D, Nielsen J
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Nucleic Acids Res. 44 (12) 5529-5539 [2016-07-08; online 2016-05-25]
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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Ståhl PL, Salmén F, Vickovic S, ..., Lundeberg J, Frisén J
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Dinosaur: A Refined Open-Source Peptide MS Feature Detector.
Teleman J, Chawade A, Sandin M, Levander F, Malmström J
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A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.
Humble E, Martinez-Barrio A, Forcada J, ..., Wolf JB, Hoffman JI
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Mol Ecol Resour 16 (4) 909-921 [2016-07-00; online 2015-12-20]
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Distinct transcription factor complexes act on a permissive chromatin landscape to establish regionalized gene expression in CNS stem cells.
Hagey DW, Zaouter C, Combeau G, ..., Huss M, Muhr J
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Genome Res. 26 (7) 908-917 [2016-07-00; online 2016-05-20]
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The role of germline alterations in the DNA damage response genes BRIP1 and BRCA2 in melanoma susceptibility.
Tuominen R, Engström PG, Helgadottir H, ..., Hansson J, Höiom V
Genes Chromosomes Cancer 55 (7) 601-611 [2016-07-00; online 2016-04-14]
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PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics.
Fernandez-Ricaud L, Kourtchenko O, Zackrisson M, Warringer J, Blomberg A
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Read-based phasing of related individuals.
Garg S, Martin M, Marschall T
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Bioinformatics 32 (12) i234-i242 [2016-06-15; online 2016-06-17]
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Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma.
Gatto F, Volpi N, Nilsson H, ..., Basso U, Nielsen J
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Cell Rep 15 (8) 1822-1836 [2016-05-24; online 2016-05-18]
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Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution.
Díez B, Nylander JA, Ininbergs K, ..., Rusch DB, Bergman B
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Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins.
Hayat S, Peters C, Shu N, Tsirigos KD, Elofsson A
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Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)
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Changes in variation at the MHC class II DQA locus during the final demise of the woolly mammoth.
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The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.
Martinez Barrio A, Lamichhaney S, Fan G, ..., Xu X, Andersson L
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Regulating retrotransposon activity through the use of alternative transcription start sites.
Persson J, Steglich B, Smialowska A, ..., Nielsen O, Ekwall K
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The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.
Engel P, Kwong WK, McFrederick Q, ..., vanEngelsdorp D, Dainat B
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EPH/ephrin profile and EPHB2 expression predicts patient survival in breast cancer.
Husa AM, Magić Ž, Larsson M, Fornander T, Pérez-Tenorio G
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Improved topology prediction using the terminal hydrophobic helices rule.
Peters C, Tsirigos KD, Shu N, Elofsson A
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Bioinformatics 32 (8) 1158-1162 [2016-04-15; online 2015-12-09]
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Identification and Characterization of IgdE, a Novel IgG-degrading Protease of Streptococcus suis with Unique Specificity for Porcine IgG.
Spoerry C, Seele J, Valentin-Weigand P, Baums CG, von Pawel-Rammingen U
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Transcriptomics resources of human tissues and organs.
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Global genome splicing analysis reveals an increased number of alternatively spliced genes with aging.
Rodríguez SA, Grochová D, McKenna T, ..., Erdos MR, Eriksson M
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Whole-body fat oxidation increases more by prior exercise than overnight fasting in elite endurance athletes.
Andersson Hall U, Edin F, Pedersen A, Madsen K
Appl Physiol Nutr Metab 41 (4) 430-437 [2016-04-00; online 2015-12-17]
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RNA transcript sequencing reveals inorganic sulfur compound oxidation pathways in the acidophile Acidithiobacillus ferrivorans.
Christel S, Fridlund J, Buetti-Dinh A, ..., Watkin EL, Dopson M
pii: fnw057
FEMS Microbiol. Lett. 363 (7) - [2016-04-00; online 2016-03-10]
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VEGFR2 pY949 signalling regulates adherens junction integrity and metastatic spread.
Li X, Padhan N, Sjöström EO, ..., Jansson L, Claesson-Welsh L
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Nat Commun 7 (-) 11017 [2016-03-23; online 2016-03-23]
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In Situ Staining and Laser Capture Microdissection of Lymph Node Residing SIV Gag-Specific CD8+ T cells--A Tool to Interrogate a Functional Immune Response Ex Vivo.
Tjernlund A, Burgener A, Lindvall JM, ..., McElrath MJ, Corey L
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PLoS ONE 11 (3) e0149907 [2016-03-17; online 2016-03-17]
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Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden.
Zepeda Mendoza ML, Lundberg J, Ivarsson M, ..., Sallstedt T, Dalen L
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PLoS ONE 11 (3) e0151577 [2016-03-17; online 2016-03-17]
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The role of transposable elements for gene expression in Capsella hybrids and allopolyploids
Steige K, Reimegård J, Rebernig CA, ..., Scofield DG, Slotte T
bioRxiv - (-) - [2016-03-16; online 2016-03-16]
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The FAIR Guiding Principles for scientific data management and stewardship.
Wilkinson MD, Dumontier M, Aalbersberg IJ, ..., Zhao J, Mons B
pii: sdata201618 pmc: PMC4792175
Sci Data 3 (-) 160018 [2016-03-15; online 2016-03-15]
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Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly.
Celorio-Mancera Mde L, Wheat CW, Huss M, ..., Nylin S, Janz N
pii: 10.1186/s12862-016-0627-y pmc: PMC4782335 ArrayExpress: E-MTAB-3861
BMC Evol. Biol. 16 (-) 59 [2016-03-08; online 2016-03-08]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Collaborative] National Genomics Infrastructure [Service]
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Systematic analysis of overall survival and interactions between tumor mutations and drug treatment.
Gatto F, Nielsen J
pii: 10.1186/s13045-016-0249-2 pmc: PMC4774108
J Hematol Oncol 9 (-) 15 [2016-03-02; online 2016-03-02]
Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
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Altered DNA methylation of glycolytic and lipogenic genes in liver from obese and type 2 diabetic patients.
Kirchner H, Sinha I, Gao H, ..., Dahlman-Wright K, Zierath JR
pii: S2212-8778(15)00234-3 pmc: PMC4770265
Mol Metab 5 (3) 171-183 [2016-03-00; online 2016-01-02]
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Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors.
Shah F, Nicolás C, Bentzer J, ..., Persson P, Tunlid A
pmc: PMC5061094
New Phytol. 209 (4) 1705-1719 [2016-03-00; online 2015-11-04]
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Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species.
Wang J, Street NR, Scofield DG, Ingvarsson PK
pii: genetics.115.183152 pmc: PMC4788117
Genetics 202 (3) 1185-1200 [2016-03-00; online 2016-01-02]
Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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A Multiplex Protein Panel Applied to Cerebrospinal Fluid Reveals Three New Biomarker Candidates in ALS but None in Neuropathic Pain Patients
Lind AL, Wu D, Freyhult E, ..., Landegren U, Kamali-Moghaddam M
PLoS ONE 11 (2) e0149821 [2016-02-25; online 2016-02-25]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] PLA and Single Cell Proteomics [Technology development]
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Postprandial metabolomics: A pilot mass spectrometry and NMR study of the human plasma metabolome in response to a challenge meal.
Karimpour M, Surowiec I, Wu J, ..., Zivkovic AM, Nording ML
pii: S0003-2670(15)30040-4
Anal. Chim. Acta 908 (-) 121-131 [2016-02-18; online 2016-01-31]
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Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development.
Obudulu O, Bygdell J, Sundberg B, ..., Trygg J, Wingsle G
pii: 10.1186/s12864-016-2458-z pmc: PMC4758094
BMC Genomics 17 (-) 119 [2016-02-18; online 2016-02-18]
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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.
Olsen JL, Rouzé P, Verhelst B, ..., Reusch TB, Van de Peer Y
pii: nature16548 BioProject: PRJNA41721 GENBANK: KG963492 GENBANK: KG963493 GENBANK: KG963494 GENBANK: KG963495 GENBANK: KG963496 GENBANK: KG963497 GENBANK: KG963498 GENBANK: KG963499 GENBANK: KG963500 GENBANK: KG963501 GENBANK: KG963502 GENBANK: KG963503 GENBANK: KG963504 GENBANK: KG963505 GENBANK: KG963506 GENBANK: KG963507 GENBANK: KG963508 GENBANK: KG963509 GENBANK: KG963510 GENBANK: KG963511 GENBANK: KG963512 GENBANK: KG963513 GENBANK: KG963514 GENBANK: KG963515 GENBANK: KG963516 GENBANK: KG963517 GENBANK: KG963518 GENBANK: KG963519 GENBANK: KG963520 GENBANK: KG963521 GENBANK: KG963522 GENBANK: KG963523 GENBANK: KG963524 GENBANK: KG963525 GENBANK: KG963526 GENBANK: KG963527 GENBANK: KG963528 GENBANK: KG963529 GENBANK: KG963530 GENBANK: KG963531 GENBANK: KG963532 GENBANK: KG963533 GENBANK: KG963534 GENBANK: KG963535 GENBANK: KG963536 GENBANK: KG963537 GENBANK: KG963538 GENBANK: KG963539 GENBANK: KG963540 GENBANK: KG963541 GENBANK: KG963542 GENBANK: KG963543 GENBANK: KG963544 GENBANK: KG963545 GENBANK: KG963546 GENBANK: KG963547 GENBANK: KG963548 GENBANK: KG963549 GENBANK: KG963550 GENBANK: KG963551 GENBANK: KG963552 GENBANK: KG963553 GENBANK: KG963554 GENBANK: KG963555 GENBANK: KG963556 GENBANK: KG963557 GENBANK: KG963558 GENBANK: KG963559 GENBANK: KG963560 GENBANK: KG963561 GENBANK: KG963562 GENBANK: KG963563 GENBANK: KG963564 GENBANK: KG963565 GENBANK: KG963566 GENBANK: KG963567 GENBANK: KG963568 GENBANK: KG963569 GENBANK: KG963570 GENBANK: KG963571 GENBANK: KG963572 GENBANK: KG963573 GENBANK: KG963574 GENBANK: KG963575 GENBANK: KG963576 GENBANK: KG963577 GENBANK: KG963578 GENBANK: KG963579 GENBANK: KG963580 GENBANK: KG963581 GENBANK: KG963582 GENBANK: KG963583 GENBANK: KG963584 GENBANK: KG963585 GENBANK: KG963586 GENBANK: KG963587 GENBANK: KG963588 GENBANK: KG963589 GENBANK: KG963590 GENBANK: KG963591 GENBANK: KG963592 GENBANK: KG963593 GENBANK: KG963594 GENBANK: KG963595 GENBANK: KG963596 GENBANK: KG963597 GENBANK: KG963598 GENBANK: KG963599 GENBANK: KG963600 GENBANK: KG963601 GENBANK: KG963602 GENBANK: KG963603 GENBANK: KG963604 GENBANK: KG963605 GENBANK: KG963606 GENBANK: KG963607 GENBANK: KG963608 GENBANK: KG963609 GENBANK: KG963610 GENBANK: KG963611 GENBANK: KG963612 GENBANK: KG963613 GENBANK: KG963614 GENBANK: KG963615 GENBANK: KG963616 GENBANK: KG963617 GENBANK: KG963618 GENBANK: KG963619 GENBANK: KG963620 GENBANK: KG963621 GENBANK: KG963622 GENBANK: KG963623 GENBANK: KG963624 GENBANK: KG963625 GENBANK: KG963626 GENBANK: KG963627 GENBANK: KG963628 GENBANK: KG963629 GENBANK: KG963630 GENBANK: KG963631 GENBANK: KG963632 GENBANK: KG963633 GENBANK: KG963634 GENBANK: KG963635 GENBANK: KG963636 GENBANK: KG963637 GENBANK: KG963638 GENBANK: KG963639 GENBANK: KG963640 GENBANK: KG963641 GENBANK: KG963642 GENBANK: KG963643 GENBANK: KG963644 GENBANK: KG963645 GENBANK: KG963646 GENBANK: KG963647 GENBANK: KG963648 GENBANK: KG963649 GENBANK: KG963650 GENBANK: KG963651 GENBANK: KG963652 GENBANK: KG963653 GENBANK: KG963654 GENBANK: KG963655 GENBANK: KG963656 GENBANK: KG963657 GENBANK: KG963658 GENBANK: KG963659 GENBANK: KG963660 GENBANK: KG963661 GENBANK: KG963662 GENBANK: KG963663 GENBANK: KG963664 GENBANK: KG963665 GENBANK: KG963666 GENBANK: KG963667 GENBANK: KG963668 GENBANK: KG963669 GENBANK: KG963670 GENBANK: KG963671 GENBANK: KG963672 GENBANK: KG963673 GENBANK: KG963674 GENBANK: KG963675 GENBANK: KG963676 GENBANK: KG963677 GENBANK: KG963678 GENBANK: KG963679 GENBANK: KG963680 GENBANK: KG963681 GENBANK: KG963682 GENBANK: KG963683 GENBANK: KG963684 GENBANK: KG963685 GENBANK: KG963686 GENBANK: KG963687 GENBANK: KG963688 GENBANK: KG963689 GENBANK: KG963690 GENBANK: KG963691 GENBANK: KG963692 GENBANK: KG963693 GENBANK: KG963694 GENBANK: KG963695 GENBANK: KG963696 GENBANK: KG963697 GENBANK: KG963698 GENBANK: KG963699 GENBANK: KG963700 GENBANK: KG963701 GENBANK: KG963702 GENBANK: KG963703 GENBANK: KG963704 GENBANK: KG963705 GENBANK: KG963706 GENBANK: KG963707 GENBANK: KG963708 GENBANK: KG963709 GENBANK: KG963710 GENBANK: KG963711 GENBANK: KG963712 GENBANK: KG963713 GENBANK: KG963714 GENBANK: KG963715 GENBANK: KG963716 GENBANK: KG963717 GENBANK: KG963718 GENBANK: KG963719 GENBANK: KG963720 GENBANK: KG963721 GENBANK: KG963722 GENBANK: KG963723 GENBANK: KG963724 GENBANK: KG963725 GENBANK: KG963726 GENBANK: KG963727 GENBANK: KG963728 GENBANK: KG963729 GENBANK: KG963730 GENBANK: KG963731 GENBANK: KG963732 GENBANK: KG963733 GENBANK: KG963734 GENBANK: KG963735 GENBANK: KG963736 GENBANK: KG963737 GENBANK: KG963738 GENBANK: KG963739 GENBANK: KG963740 GENBANK: KG963741 GENBANK: KG963742 GENBANK: KG963743 GENBANK: KG963744 GENBANK: KG963745 GENBANK: KG963746 GENBANK: KG963747 GENBANK: KG963748 GENBANK: KG963749 GENBANK: KG963750 GENBANK: KG963751 GENBANK: KG963752 GENBANK: KG963753 GENBANK: KG963754 GENBANK: KG963755 GENBANK: KG963756 GENBANK: KG963757 GENBANK: KG963758 GENBANK: KG963759 GENBANK: KG963760 GENBANK: KG963761 GENBANK: KG963762 GENBANK: KG963763 GENBANK: KG963764 GENBANK: KG963765 GENBANK: KG963766 GENBANK: KG963767 GENBANK: KG963768 GENBANK: KG963769 GENBANK: KG963770 GENBANK: KG963771 GENBANK: KG963772 GENBANK: KG963773 GENBANK: KG963774 GENBANK: KG963775 GENBANK: KG963776 GENBANK: KG963777 GENBANK: KG963778 GENBANK: KG963779 GENBANK: KG963780 GENBANK: KG963781 GENBANK: KG963782 GENBANK: KG963783 GENBANK: KG963784 GENBANK: KG963785 GENBANK: KG963786 GENBANK: KG963787 GENBANK: KG963788 GENBANK: KG963789 GENBANK: KG963790 GENBANK: KG963791 GENBANK: KG963792 GENBANK: KG963793 GENBANK: KG963794 GENBANK: KG963795 GENBANK: KG963796 GENBANK: KG963797 GENBANK: KG963798 GENBANK: KG963799 GENBANK: KG963800 GENBANK: KG963801 GENBANK: KG963802 GENBANK: KG963803 GENBANK: KG963804 GENBANK: KG963805 GENBANK: KG963806 GENBANK: KG963807 GENBANK: KG963808 GENBANK: KG963809 GENBANK: KG963810 GENBANK: KG963811 GENBANK: KG963812 GENBANK: KG963813 GENBANK: KG963814 GENBANK: KG963815 GENBANK: KG963816 GENBANK: KG963817 GENBANK: KG963818 GENBANK: KG963819 GENBANK: KG963820 GENBANK: KG963821 GENBANK: KG963822 GENBANK: KG963823 GENBANK: KG963824 GENBANK: KG963825 GENBANK: KG963826 GENBANK: KG963827 GENBANK: KG963828 GENBANK: KG963829 GENBANK: KG963830 GENBANK: KG963831 GENBANK: KG963832 GENBANK: KG963833 GENBANK: KG963834 GENBANK: KG963835 GENBANK: KG963836 GENBANK: KG963837 GENBANK: KG963838 GENBANK: KG963839 GENBANK: KG963840 GENBANK: KG963841 GENBANK: KG963842 GENBANK: KG963843 GENBANK: KG963844 GENBANK: KG963845 GENBANK: KG963846 GENBANK: KG963847 GENBANK: KG963848 GENBANK: KG963849 GENBANK: KG963850 GENBANK: KG963851 GENBANK: KG963852 GENBANK: KG963853 GENBANK: KG963854 GENBANK: KG963855 GENBANK: KG963856 GENBANK: KG963857 GENBANK: KG963858 GENBANK: KG963859 GENBANK: KG963860 GENBANK: KG963861 GENBANK: KG963862 GENBANK: KG963863 GENBANK: KG963864 GENBANK: KG963865 GENBANK: KG963866 GENBANK: KG963867 GENBANK: KG963868 GENBANK: KG963869 GENBANK: KG963870 GENBANK: KG963871 GENBANK: KG963872 GENBANK: KG963873 GENBANK: KG963874 GENBANK: KG963875 GENBANK: KG963876 GENBANK: KG963877 GENBANK: KG963878 GENBANK: KG963879 GENBANK: KG963880 GENBANK: KG963881 GENBANK: KG963882 GENBANK: KG963883 GENBANK: KG963884 GENBANK: KG963885 GENBANK: KG963886 GENBANK: KG963887 GENBANK: KG963888 GENBANK: KG963889 GENBANK: KG963890 GENBANK: KG963891 GENBANK: KG963892 GENBANK: KG963893 GENBANK: KG963894 GENBANK: KG963895 GENBANK: KG963896 GENBANK: KG963897 GENBANK: KG963898 GENBANK: KG963899 GENBANK: KG963900 GENBANK: KG963901 GENBANK: KG963902 GENBANK: KG963903 GENBANK: KG963904 GENBANK: KG963905 GENBANK: KG963906 GENBANK: KG963907 GENBANK: KG963908 GENBANK: KG963909 GENBANK: KG963910 GENBANK: KG963911 GENBANK: KG963912 GENBANK: KG963913 GENBANK: KG963914 GENBANK: KG963915 GENBANK: KG963916 GENBANK: KG963917 GENBANK: KG963918 GENBANK: KG963919 GENBANK: KG963920 GENBANK: KG963921 GENBANK: KG963922 GENBANK: KG963923 GENBANK: KG963924 GENBANK: KG963925 GENBANK: KG963926 GENBANK: KG963927 GENBANK: KG963928 GENBANK: KG963929 GENBANK: KG963930 GENBANK: KG963931 GENBANK: KG963932 GENBANK: KG963933 GENBANK: KG963934 GENBANK: KG963935 GENBANK: KG963936 GENBANK: KG963937 GENBANK: KG963938 GENBANK: KG963939 GENBANK: KG963940 GENBANK: KG963941 GENBANK: KG963942 GENBANK: KG963943 GENBANK: KG963944 GENBANK: KG963945 GENBANK: KG963946 GENBANK: KG963947 GENBANK: KG963948 GENBANK: KG963949 GENBANK: KG963950 GENBANK: KG963951 GENBANK: KG963952 GENBANK: KG963953 GENBANK: KG963954 GENBANK: KG963955 GENBANK: KG963956 GENBANK: KG963957 GENBANK: KG963958 GENBANK: KG963959 GENBANK: KG963960 GENBANK: KG963961 GENBANK: KG963962 GENBANK: KG963963 GENBANK: KG963964 GENBANK: KG963965 GENBANK: KG963966 GENBANK: KG963967 GENBANK: KG963968 GENBANK: KG963969 GENBANK: KG963970 GENBANK: KG963971 GENBANK: KG963972 GENBANK: KG963973 GENBANK: KG963974 GENBANK: KG963975 GENBANK: KG963976 GENBANK: KG963977 GENBANK: KG963978 GENBANK: KG963979 GENBANK: KG963980 GENBANK: KG963981 GENBANK: KG963982 GENBANK: KG963983 GENBANK: KG963984 GENBANK: KG963985 GENBANK: KG963986 GENBANK: KG963987 GENBANK: KG963988 GENBANK: KG963989 GENBANK: KG963990 GENBANK: KG963991 GENBANK: KG963992 GENBANK: KG963993 GENBANK: KG963994 GENBANK: KG963995 GENBANK: KG963996 GENBANK: KG963997 GENBANK: KG963998 GENBANK: KG963999 GENBANK: KG964000 GENBANK: KG964001 GENBANK: KG964002 GENBANK: KG964003 GENBANK: KG964004 GENBANK: KG964005 GENBANK: KG964006 GENBANK: KG964007 GENBANK: KG964008 GENBANK: KG964009 GENBANK: KG964010 GENBANK: KG964011 GENBANK: KG964012 GENBANK: KG964013 GENBANK: KG964014 GENBANK: KG964015 GENBANK: KG964016 GENBANK: KG964017 GENBANK: KG964018 GENBANK: KG964019 GENBANK: KG964020 GENBANK: KG964021 GENBANK: KG964022 GENBANK: KG964023 GENBANK: KG964024 GENBANK: KG964025 GENBANK: KG964026 GENBANK: KG964027 GENBANK: KG964028 GENBANK: KG964029 GENBANK: KG964030 GENBANK: KG964031 GENBANK: KG964032 GENBANK: KG964033 GENBANK: KG964034 GENBANK: KG964035 GENBANK: KG964036 GENBANK: KG964037 GENBANK: KG964038 GENBANK: KG964039 GENBANK: KG964040 GENBANK: KG964041 GENBANK: KG964042 GENBANK: KG964043 GENBANK: KG964044 GENBANK: KG964045 GENBANK: KG964046 GENBANK: KG964047 GENBANK: KG964048 GENBANK: KG964049 GENBANK: KG964050 GENBANK: KG964051 GENBANK: KG964052 GENBANK: KG964053 GENBANK: KG964054 GENBANK: KG964055 GENBANK: KG964056 GENBANK: KG964057 GENBANK: KG964058 GENBANK: KG964059 GENBANK: KG964060 GENBANK: KG964061 GENBANK: KG964062 GENBANK: KG964063 GENBANK: KG964064 GENBANK: KG964065 GENBANK: KG964066 GENBANK: KG964067 GENBANK: KG964068 GENBANK: KG964069 GENBANK: KG964070 GENBANK: KG964071 GENBANK: KG964072 GENBANK: KG964073 GENBANK: KG964074 GENBANK: KG964075 GENBANK: KG964076 GENBANK: KG964077 GENBANK: KG964078 GENBANK: KG964079 GENBANK: KG964080 GENBANK: KG964081 GENBANK: KG964082 GENBANK: KG964083 GENBANK: KG964084 GENBANK: KG964085 GENBANK: KG964086 GENBANK: KG964087 GENBANK: KG964088 GENBANK: KG964089 GENBANK: KG964090 GENBANK: KG964091 GENBANK: KG964092 GENBANK: KG964093 GENBANK: KG964094 GENBANK: KG964095 GENBANK: KG964096 GENBANK: KG964097 GENBANK: KG964098 GENBANK: KG964099 GENBANK: KG964100 GENBANK: KG964101 GENBANK: KG964102 GENBANK: KG964103 GENBANK: KG964104 GENBANK: KG964105 GENBANK: KG964106 GENBANK: KG964107 GENBANK: KG964108 GENBANK: KG964109 GENBANK: KG964110 GENBANK: KG964111 GENBANK: KG964112 GENBANK: KG964113 GENBANK: KG964114 GENBANK: KG964115 GENBANK: KG964116 GENBANK: KG964117 GENBANK: KG964118 GENBANK: KG964119 GENBANK: KG964120 GENBANK: KG964121 GENBANK: KG964122 GENBANK: KG964123 GENBANK: KG964124 GENBANK: KG964125 GENBANK: KG964126 GENBANK: KG964127 GENBANK: KG964128 GENBANK: KG964129 GENBANK: KG964130 GENBANK: KG964131 GENBANK: KG964132 GENBANK: KG964133 GENBANK: KG964134 GENBANK: KG964135 GENBANK: KG964136 GENBANK: KG964137 GENBANK: KG964138 GENBANK: KG964139 GENBANK: KG964140 GENBANK: KG964141 GENBANK: KG964142 GENBANK: KG964143 GENBANK: KG964144 GENBANK: KG964145 GENBANK: KG964146 GENBANK: KG964147 GENBANK: KG964148 GENBANK: KG964149 GENBANK: KG964150 GENBANK: KG964151 GENBANK: KG964152 GENBANK: KG964153 GENBANK: KG964154 GENBANK: KG964155 GENBANK: KG964156 GENBANK: KG964157 GENBANK: KG964158 GENBANK: KG964159 GENBANK: KG964160 GENBANK: KG964161 GENBANK: KG964162 GENBANK: KG964163 GENBANK: KG964164 GENBANK: KG964165 GENBANK: KG964166 GENBANK: KG964167 GENBANK: KG964168 GENBANK: KG964169 GENBANK: KG964170 GENBANK: KG964171 GENBANK: KG964172 GENBANK: KG964173 GENBANK: KG964174 GENBANK: KG964175 GENBANK: KG964176 GENBANK: KG964177 GENBANK: KG964178 GENBANK: KG964179 GENBANK: KG964180 GENBANK: KG964181 GENBANK: KG964182 GENBANK: KG964183 GENBANK: KG964184 GENBANK: KG964185 GENBANK: KG964186 GENBANK: KG964187 GENBANK: KG964188 GENBANK: KG964189 GENBANK: KG964190 GENBANK: KG964191 GENBANK: KG964192 GENBANK: KG964193 GENBANK: KG964194 GENBANK: KG964195 GENBANK: KG964196 GENBANK: KG964197 GENBANK: KG964198 GENBANK: KG964199 GENBANK: KG964200 GENBANK: KG964201 GENBANK: KG964202 GENBANK: KG964203 GENBANK: KG964204 GENBANK: KG964205 GENBANK: KG964206 GENBANK: KG964207 GENBANK: KG964208 GENBANK: KG964209 GENBANK: KG964210 GENBANK: KG964211 GENBANK: KG964212 GENBANK: KG964213 GENBANK: KG964214 GENBANK: KG964215 GENBANK: KG964216 GENBANK: KG964217 GENBANK: KG964218 GENBANK: KG964219 GENBANK: KG964220 GENBANK: KG964221 GENBANK: KG964222 GENBANK: KG964223 GENBANK: KG964224 GENBANK: KG964225 GENBANK: KG964226 GENBANK: KG964227 GENBANK: KG964228 GENBANK: KG964229 GENBANK: KG964230 GENBANK: KG964231 GENBANK: KG964232 GENBANK: KG964233 GENBANK: KG964234 GENBANK: KG964235 GENBANK: KG964236 GENBANK: KG964237 GENBANK: KG964238 GENBANK: KG964239 GENBANK: KG964240 GENBANK: KG964241 GENBANK: KG964242 GENBANK: KG964243 GENBANK: KG964244 GENBANK: KG964245 GENBANK: KG964246 GENBANK: KG964247 GENBANK: KG964248 GENBANK: KG964249 GENBANK: KG964250 GENBANK: KG964251 GENBANK: KG964252 GENBANK: KG964253 GENBANK: KG964254 GENBANK: KG964255 GENBANK: KG964256 GENBANK: KG964257 GENBANK: KG964258 GENBANK: KG964259 GENBANK: KG964260 GENBANK: KG964261 GENBANK: KG964262 GENBANK: KG964263 GENBANK: KG964264 GENBANK: KG964265 GENBANK: KG964266 GENBANK: KG964267 GENBANK: KG964268 GENBANK: KG964269 GENBANK: KG964270 GENBANK: KG964271 GENBANK: KG964272 GENBANK: KG964273 GENBANK: KG964274 GENBANK: KG964275 GENBANK: KG964276 GENBANK: KG964277 GENBANK: KG964278 GENBANK: KG964279 GENBANK: KG964280 GENBANK: KG964281 GENBANK: KG964282 GENBANK: KG964283 GENBANK: KG964284 GENBANK: KG964285 GENBANK: KG964286 GENBANK: KG964287 GENBANK: KG964288 GENBANK: KG964289 GENBANK: KG964290 GENBANK: KG964291 GENBANK: KG964292 GENBANK: KG964293 GENBANK: KG964294 GENBANK: KG964295 GENBANK: KG964296 GENBANK: KG964297 GENBANK: KG964298 GENBANK: KG964299 GENBANK: KG964300 GENBANK: KG964301 GENBANK: KG964302 GENBANK: KG964303 GENBANK: KG964304 GENBANK: KG964305 GENBANK: KG964306 GENBANK: KG964307 GENBANK: KG964308 GENBANK: KG964309 GENBANK: KG964310 GENBANK: KG964311 GENBANK: KG964312 GENBANK: KG964313 GENBANK: KG964314 GENBANK: KG964315 GENBANK: KG964316 GENBANK: KG964317 GENBANK: KG964318 GENBANK: KG964319 GENBANK: KG964320 GENBANK: KG964321 GENBANK: KG964322 GENBANK: KG964323 GENBANK: KG964324 GENBANK: KG964325 GENBANK: KG964326 GENBANK: KG964327 GENBANK: KG964328 GENBANK: KG964329 GENBANK: KG964330 GENBANK: KG964331 GENBANK: KG964332 GENBANK: KG964333 GENBANK: KG964334 GENBANK: KG964335 GENBANK: KG964336 GENBANK: KG964337 GENBANK: KG964338 GENBANK: KG964339 GENBANK: KG964340 GENBANK: KG964341 GENBANK: KG964342 GENBANK: KG964343 GENBANK: KG964344 GENBANK: KG964345 GENBANK: KG964346 GENBANK: KG964347 GENBANK: KG964348 GENBANK: KG964349 GENBANK: KG964350 GENBANK: KG964351 GENBANK: KG964352 GENBANK: KG964353 GENBANK: KG964354 GENBANK: KG964355 GENBANK: KG964356 GENBANK: KG964357 GENBANK: KG964358 GENBANK: KG964359 GENBANK: KG964360 GENBANK: KG964361 GENBANK: KG964362 GENBANK: KG964363 GENBANK: KG964364 GENBANK: KG964365 GENBANK: KG964366 GENBANK: KG964367 GENBANK: KG964368 GENBANK: KG964369 GENBANK: KG964370 GENBANK: KG964371 GENBANK: KG964372 GENBANK: KG964373 GENBANK: KG964374 GENBANK: KG964375 GENBANK: KG964376 GENBANK: KG964377 GENBANK: KG964378 GENBANK: KG964379 GENBANK: KG964380 GENBANK: KG964381 GENBANK: KG964382 GENBANK: KG964383 GENBANK: KG964384 GENBANK: KG964385 GENBANK: KG964386 GENBANK: KG964387 GENBANK: KG964388 GENBANK: KG964389 GENBANK: KG964390 GENBANK: KG964391 GENBANK: KG964392 GENBANK: KG964393 GENBANK: KG964394 GENBANK: KG964395 GENBANK: KG964396 GENBANK: KG964397 GENBANK: KG964398 GENBANK: KG964399 GENBANK: KG964400 GENBANK: KG964401 GENBANK: KG964402 GENBANK: KG964403 GENBANK: KG964404 GENBANK: KG964405 GENBANK: KG964406 GENBANK: KG964407 GENBANK: KG964408 GENBANK: KG964409 GENBANK: KG964410 GENBANK: KG964411 GENBANK: KG964412 GENBANK: KG964413 GENBANK: KG964414 GENBANK: KG964415 GENBANK: KG964416 GENBANK: KG964417 GENBANK: KG964418 GENBANK: KG964419 GENBANK: KG964420 GENBANK: KG964421 GENBANK: KG964422 GENBANK: KG964423 GENBANK: KG964424 GENBANK: KG964425 GENBANK: KG964426 GENBANK: KG964427 GENBANK: KG964428 GENBANK: KG964429 GENBANK: KG964430 GENBANK: KG964431 GENBANK: KG964432 GENBANK: KG964433 GENBANK: KG964434 GENBANK: KG964435 GENBANK: KG964436 GENBANK: KG964437 GENBANK: KG964438 GENBANK: KG964439 GENBANK: KG964440 GENBANK: KG964441 GENBANK: KG964442 GENBANK: KG964443 GENBANK: KG964444 GENBANK: KG964445 GENBANK: KG964446 GENBANK: KG964447 GENBANK: KG964448 GENBANK: KG964449 GENBANK: KG964450 GENBANK: KG964451 GENBANK: KG964452 GENBANK: KG964453 GENBANK: KG964454 GENBANK: KG964455 GENBANK: KG964456 GENBANK: KG964457 GENBANK: KG964458 GENBANK: KG964459 GENBANK: KG964460 GENBANK: KG964461 GENBANK: KG964462 GENBANK: KG964463 GENBANK: KG964464 GENBANK: KG964465 GENBANK: KG964466 GENBANK: KG964467 GENBANK: KG964468 GENBANK: KG964469 GENBANK: KG964470 GENBANK: KG964471 GENBANK: KG964472 GENBANK: KG964473 GENBANK: KG964474 GENBANK: KG964475 GENBANK: KG964476 GENBANK: KG964477 GENBANK: KG964478 GENBANK: KG964479 GENBANK: KG964480 GENBANK: KG964481 GENBANK: KG964482 GENBANK: KG964483 GENBANK: KG964484 GENBANK: KG964485 GENBANK: KG964486 GENBANK: KG964487 GENBANK: KG964488 GENBANK: KG964489 GENBANK: KG964490 GENBANK: KG964491 GENBANK: KG964492 GENBANK: KG964493 GENBANK: KG964494 GENBANK: KG964495 GENBANK: KG964496 GENBANK: KG964497 GENBANK: KG964498 GENBANK: KG964499 GENBANK: KG964500 GENBANK: KG964501 GENBANK: KG964502 GENBANK: KG964503 GENBANK: KG964504 GENBANK: KG964505 GENBANK: KG964506 GENBANK: KG964507 GENBANK: KG964508 GENBANK: KG964509 GENBANK: KG964510 GENBANK: KG964511 GENBANK: KG964512 GENBANK: KG964513 GENBANK: KG964514 GENBANK: KG964515 GENBANK: KG964516 GENBANK: KG964517 GENBANK: KG964518 GENBANK: KG964519 GENBANK: KG964520 GENBANK: KG964521 GENBANK: KG964522 GENBANK: KG964523 GENBANK: KG964524 GENBANK: KG964525 GENBANK: KG964526 GENBANK: KG964527 GENBANK: KG964528 GENBANK: KG964529 GENBANK: KG964530 GENBANK: KG964531 GENBANK: KG964532 GENBANK: KG964533 GENBANK: KG964534 GENBANK: KG964535 GENBANK: KG964536 GENBANK: KG964537 GENBANK: KG964538 GENBANK: KG964539 GENBANK: KG964540 GENBANK: KG964541 GENBANK: KG964542 GENBANK: KG964543 GENBANK: KG964544 GENBANK: KG964545 GENBANK: KG964546 GENBANK: KG964547 GENBANK: KG964548 GENBANK: KG964549 GENBANK: KG964550 GENBANK: KG964551 GENBANK: KG964552 GENBANK: KG964553 GENBANK: KG964554 GENBANK: KG964555 GENBANK: KG964556 GENBANK: KG964557 GENBANK: KG964558 GENBANK: KG964559 GENBANK: KG964560 GENBANK: KG964561 GENBANK: KG964562 GENBANK: KG964563 GENBANK: KG964564 GENBANK: KG964565 GENBANK: KG964566 GENBANK: KG964567 GENBANK: KG964568 GENBANK: KG964569 GENBANK: KG964570 GENBANK: KG964571 GENBANK: KG964572 GENBANK: KG964573 GENBANK: KG964574 GENBANK: KG964575 GENBANK: KG964576 GENBANK: KG964577 GENBANK: KG964578 GENBANK: KG964579 GENBANK: KG964580 GENBANK: KG964581 GENBANK: KG964582 GENBANK: KG964583 GENBANK: KG964584 GENBANK: KG964585 GENBANK: KG964586 GENBANK: KG964587 GENBANK: KG964588 GENBANK: KG964589 GENBANK: KG964590 GENBANK: KG964591 GENBANK: KG964592 GENBANK: KG964593 GENBANK: KG964594 GENBANK: KG964595 GENBANK: KG964596 GENBANK: KG964597 GENBANK: KG964598 GENBANK: KG964599 GENBANK: KG964600 GENBANK: KG964601 GENBANK: KG964602 GENBANK: KG964603 GENBANK: KG964604 GENBANK: KG964605 GENBANK: KG964606 GENBANK: KG964607 GENBANK: KG964608 GENBANK: KG964609 GENBANK: KG964610 GENBANK: KG964611 GENBANK: KG964612 GENBANK: KG964613 GENBANK: KG964614 GENBANK: KG964615 GENBANK: KG964616 GENBANK: KG964617 GENBANK: KG964618 GENBANK: KG964619 GENBANK: KG964620 GENBANK: KG964621 GENBANK: KG964622 GENBANK: KG964623 GENBANK: KG964624 GENBANK: KG964625 GENBANK: KG964626 GENBANK: KG964627 GENBANK: KG964628 GENBANK: KG964629 GENBANK: KG964630 GENBANK: KG964631 GENBANK: KG964632 GENBANK: KG964633 GENBANK: KG964634 GENBANK: KG964635 GENBANK: KG964636 GENBANK: KG964637 GENBANK: KG964638 GENBANK: KG964639 GENBANK: KG964640 GENBANK: KG964641 GENBANK: KG964642 GENBANK: KG964643 GENBANK: KG964644 GENBANK: KG964645 GENBANK: KG964646 GENBANK: KG964647 GENBANK: KG964648 GENBANK: KG964649 GENBANK: KG964650 GENBANK: KG964651 GENBANK: KG964652 GENBANK: KG964653 GENBANK: KG964654 GENBANK: KG964655 GENBANK: KG964656 GENBANK: KG964657 GENBANK: KG964658 GENBANK: KG964659 GENBANK: KG964660 GENBANK: KG964661 GENBANK: KG964662 GENBANK: KG964663 GENBANK: KG964664 GENBANK: KG964665 GENBANK: KG964666 GENBANK: KG964667 GENBANK: KG964668 GENBANK: KG964669 GENBANK: KG964670 GENBANK: KG964671 GENBANK: KG964672 GENBANK: KG964673 GENBANK: KG964674 GENBANK: KG964675 GENBANK: KG964676 GENBANK: KG964677 GENBANK: KG964678 GENBANK: KG964679 GENBANK: KG964680 GENBANK: KG964681 GENBANK: KG964682 GENBANK: KG964683 GENBANK: KG964684 GENBANK: KG964685 GENBANK: KG964686 GENBANK: KG964687 GENBANK: KG964688 GENBANK: KG964689 GENBANK: KG964690 GENBANK: KG964691 GENBANK: KG964692 GENBANK: KG964693 GENBANK: KG964694 GENBANK: KG964695 GENBANK: KG964696 GENBANK: KG964697 GENBANK: KG964698 GENBANK: KG964699 GENBANK: KG964700 GENBANK: KG964701 GENBANK: KG964702 GENBANK: KG964703 GENBANK: KG964704 GENBANK: KG964705 GENBANK: KG964706 GENBANK: KG964707 GENBANK: KG964708 GENBANK: KG964709 GENBANK: KG964710 GENBANK: KG964711 GENBANK: KG964712 GENBANK: KG964713 GENBANK: KG964714 GENBANK: KG964715 GENBANK: KG964716 GENBANK: KG964717 GENBANK: KG964718 GENBANK: KG964719 GENBANK: KG964720 GENBANK: KG964721 GENBANK: KG964722 GENBANK: KG964723 GENBANK: KG964724 GENBANK: KG964725 GENBANK: KG964726 GENBANK: KG964727 GENBANK: KG964728 GENBANK: KG964729 GENBANK: KG964730 GENBANK: KG964731 GENBANK: KG964732 GENBANK: KG964733 GENBANK: KG964734 GENBANK: KG964735 GENBANK: KG964736 GENBANK: KG964737 GENBANK: KG964738 GENBANK: KG964739 GENBANK: KG964740 GENBANK: KG964741 GENBANK: KG964742 GENBANK: KG964743 GENBANK: KG964744 GENBANK: KG964745 GENBANK: KG964746 GENBANK: KG964747 GENBANK: KG964748 GENBANK: KG964749 GENBANK: KG964750 GENBANK: KG964751 GENBANK: KG964752 GENBANK: KG964753 GENBANK: KG964754 GENBANK: KG964755 GENBANK: KG964756 GENBANK: KG964757 GENBANK: KG964758 GENBANK: KG964759 GENBANK: KG964760 GENBANK: KG964761 GENBANK: KG964762 GENBANK: KG964763 GENBANK: KG964764 GENBANK: KG964765 GENBANK: KG964766 GENBANK: KG964767 GENBANK: KG964768 GENBANK: KG964769 GENBANK: KG964770 GENBANK: KG964771 GENBANK: KG964772 GENBANK: KG964773 GENBANK: KG964774 GENBANK: KG964775 GENBANK: KG964776 GENBANK: KG964777 GENBANK: KG964778 GENBANK: KG964779 GENBANK: KG964780 GENBANK: KG964781 GENBANK: KG964782 GENBANK: KG964783 GENBANK: KG964784 GENBANK: KG964785 GENBANK: KG964786 GENBANK: KG964787 GENBANK: KG964788 GENBANK: KG964789 GENBANK: KG964790 GENBANK: KG964791 GENBANK: KG964792 GENBANK: KG964793 GENBANK: KG964794 GENBANK: KG964795 GENBANK: KG964796 GENBANK: KG964797 GENBANK: KG964798 GENBANK: KG964799 GENBANK: KG964800 GENBANK: KG964801 GENBANK: KG964802 GENBANK: KG964803 GENBANK: KG964804 GENBANK: KG964805 GENBANK: KG964806 GENBANK: KG964807 GENBANK: KG964808 GENBANK: KG964809 GENBANK: KG964810 GENBANK: KG964811 GENBANK: KG964812 GENBANK: KG964813 GENBANK: KG964814 GENBANK: KG964815 GENBANK: KG964816 GENBANK: KG964817 GENBANK: KG964818 GENBANK: KG964819 GENBANK: KG964820 GENBANK: KG964821 GENBANK: KG964822 GENBANK: KG964823 GENBANK: KG964824 GENBANK: KG964825 GENBANK: KG964826 GENBANK: KG964827 GENBANK: KG964828 GENBANK: KG964829 GENBANK: KG964830 GENBANK: KG964831 GENBANK: KG964832 GENBANK: KG964833 GENBANK: KG964834 GENBANK: KG964835 GENBANK: KG964836 GENBANK: KG964837 GENBANK: KG964838 GENBANK: KG964839 GENBANK: KG964840 GENBANK: KG964841 GENBANK: KG964842 GENBANK: KG964843 GENBANK: KG964844 GENBANK: KG964845 GENBANK: KG964846 GENBANK: KG964847 GENBANK: KG964848 GENBANK: KG964849 GENBANK: KG964850 GENBANK: KG964851 GENBANK: KG964852 GENBANK: KG964853 GENBANK: KG964854 GENBANK: KG964855 GENBANK: KG964856 GENBANK: KG964857 GENBANK: KG964858 GENBANK: KG964859 GENBANK: KG964860 GENBANK: KG964861 GENBANK: KG964862 GENBANK: KG964863 GENBANK: KG964864 GENBANK: KG964865 GENBANK: KG964866 GENBANK: KG964867 GENBANK: KG964868 GENBANK: KG964869 GENBANK: KG964870 GENBANK: KG964871 GENBANK: KG964872 GENBANK: KG964873 GENBANK: KG964874 GENBANK: KG964875 GENBANK: KG964876 GENBANK: KG964877 GENBANK: KG964878 GENBANK: KG964879 GENBANK: KG964880 GENBANK: KG964881 GENBANK: KG964882 GENBANK: KG964883 GENBANK: KG964884 GENBANK: KG964885 GENBANK: KG964886 GENBANK: KG964887 GENBANK: KG964888 GENBANK: KG964889 GENBANK: KG964890 GENBANK: KG964891 GENBANK: KG964892 GENBANK: KG964893 GENBANK: KG964894 GENBANK: KG964895 GENBANK: KG964896 GENBANK: KG964897 GENBANK: KG964898 GENBANK: KG964899 GENBANK: KG964900 GENBANK: KG964901 GENBANK: KG964902 GENBANK: KG964903 GENBANK: KG964904 GENBANK: KG964905 GENBANK: KG964906 GENBANK: KG964907 GENBANK: KG964908 GENBANK: KG964909 GENBANK: KG964910 GENBANK: KG964911 GENBANK: KG964912 GENBANK: KG964913 GENBANK: KG964914 GENBANK: KG964915 GENBANK: KG964916 GENBANK: KG964917 GENBANK: KG964918 GENBANK: KG964919 GENBANK: KG964920 GENBANK: KG964921 GENBANK: KG964922 GENBANK: KG964923 GENBANK: KG964924 GENBANK: KG964925 GENBANK: KG964926 GENBANK: KG964927 GENBANK: KG964928 GENBANK: KG964929 GENBANK: KG964930 GENBANK: KG964931 GENBANK: KG964932 GENBANK: KG964933 GENBANK: KG964934 GENBANK: KG964935 GENBANK: KG964936 GENBANK: KG964937 GENBANK: KG964938 GENBANK: KG964939 GENBANK: KG964940 GENBANK: KG964941 GENBANK: KG964942 GENBANK: KG964943 GENBANK: KG964944 GENBANK: KG964945 GENBANK: KG964946 GENBANK: KG964947 GENBANK: KG964948 GENBANK: KG964949 GENBANK: KG964950 GENBANK: KG964951 GENBANK: KG964952 GENBANK: KG964953 GENBANK: KG964954 GENBANK: KG964955 GENBANK: KG964956 GENBANK: KG964957 GENBANK: KG964958 GENBANK: KG964959 GENBANK: KG964960 GENBANK: KG964961 GENBANK: KG964962 GENBANK: KG964963 GENBANK: KG964964 GENBANK: KG964965 GENBANK: KG964966 GENBANK: KG964967 GENBANK: KG964968 GENBANK: KG964969 GENBANK: KG964970 GENBANK: KG964971 GENBANK: KG964972 GENBANK: KG964973 GENBANK: KG964974 GENBANK: KG964975 GENBANK: KG964976 GENBANK: KG964977 GENBANK: KG964978 GENBANK: KG964979 GENBANK: KG964980 GENBANK: KG964981 GENBANK: KG964982 GENBANK: KG964983 GENBANK: KG964984 GENBANK: KG964985 GENBANK: KG964986 GENBANK: KG964987 GENBANK: KG964988 GENBANK: KG964989 GENBANK: KG964990 GENBANK: KG964991 GENBANK: KG964992 GENBANK: KG964993 GENBANK: KG964994 GENBANK: KG964995 GENBANK: KG964996 GENBANK: KG964997 GENBANK: KG964998 GENBANK: KG964999 GENBANK: KG965000 GENBANK: KG965001 GENBANK: KG965002 GENBANK: KG965003 GENBANK: KG965004 GENBANK: KG965005 GENBANK: KG965006 GENBANK: KG965007 GENBANK: KG965008 GENBANK: KG965009 GENBANK: KG965010 GENBANK: KG965011 GENBANK: KG965012 GENBANK: KG965013 GENBANK: KG965014 GENBANK: KG965015 GENBANK: KG965016 GENBANK: KG965017 GENBANK: KG965018 GENBANK: KG965019 GENBANK: KG965020 GENBANK: KG965021 GENBANK: KG965022 GENBANK: KG965023 GENBANK: KG965024 GENBANK: KG965025 GENBANK: KG965026 GENBANK: KG965027 GENBANK: KG965028 GENBANK: KG965029 GENBANK: KG965030 GENBANK: KG965031 GENBANK: KG965032 GENBANK: KG965033 GENBANK: KG965034 GENBANK: KG965035 GENBANK: KG965036 GENBANK: KG965037 GENBANK: KG965038 GENBANK: KG965039 GENBANK: KG965040 GENBANK: KG965041 GENBANK: KG965042 GENBANK: KG965043 GENBANK: KG965044 GENBANK: KG965045 GENBANK: KG965046 GENBANK: KG965047 GENBANK: KG965048 GENBANK: KG965049 GENBANK: KG965050 GENBANK: KG965051 GENBANK: KG965052 GENBANK: KG965053 GENBANK: KG965054 GENBANK: KG965055 GENBANK: KG965056 GENBANK: KG965057 GENBANK: KG965058 GENBANK: KG965059 GENBANK: KG965060 GENBANK: KG965061 GENBANK: KG965062 GENBANK: KG965063 GENBANK: KG965064 GENBANK: KG965065 GENBANK: KG965066 GENBANK: KG965067 GENBANK: KG965068 GENBANK: KG965069 GENBANK: KG965070 GENBANK: KG965071 GENBANK: KG965072 GENBANK: KG965073 GENBANK: KG965074 GENBANK: KG965075 GENBANK: KG965076 GENBANK: KG965077 GENBANK: KG965078 GENBANK: KG965079 GENBANK: KG965080 GENBANK: KG965081 GENBANK: KG965082 GENBANK: KG965083 GENBANK: KG965084 GENBANK: KG965085 GENBANK: KG965086 GENBANK: KG965087 GENBANK: KG965088 GENBANK: KG965089 GENBANK: KG965090 GENBANK: KG965091 GENBANK: KG965092 GENBANK: KG965093 GENBANK: KG965094 GENBANK: KG965095 GENBANK: KG965096 GENBANK: KG965097 GENBANK: KG965098 GENBANK: KG965099 GENBANK: KG965100 GENBANK: KG965101 GENBANK: KG965102 GENBANK: KG965103 GENBANK: KG965104 GENBANK: KG965105 GENBANK: KG965106 GENBANK: KG965107 GENBANK: KG965108 GENBANK: KG965109 GENBANK: KG965110 GENBANK: KG965111 GENBANK: KG965112 GENBANK: KG965113 GENBANK: KG965114 GENBANK: KG965115 GENBANK: KG965116 GENBANK: KG965117 GENBANK: KG965118 GENBANK: KG965119 GENBANK: KG965120 GENBANK: KG965121 GENBANK: KG965122 GENBANK: KG965123 GENBANK: KG965124 GENBANK: KG965125 GENBANK: KG965126 GENBANK: KG965127 GENBANK: KG965128 GENBANK: KG965129 GENBANK: KG965130 GENBANK: KG965131 GENBANK: KG965132 GENBANK: KG965133 GENBANK: KG965134 GENBANK: KG965135 GENBANK: KG965136 GENBANK: KG965137 GENBANK: KG965138 GENBANK: KG965139 GENBANK: KG965140 GENBANK: KG965141 GENBANK: KG965142 GENBANK: KG965143 GENBANK: KG965144 GENBANK: KG965145 GENBANK: KG965146 GENBANK: KG965147 GENBANK: KG965148 GENBANK: KG965149 GENBANK: KG965150 GENBANK: KG965151 GENBANK: KG965152 GENBANK: KG965153 GENBANK: KG965154 GENBANK: KG965155 GENBANK: KG965156 GENBANK: KG965157 GENBANK: KG965158 GENBANK: KG965159 GENBANK: KG965160 GENBANK: KG965161 GENBANK: KG965162 GENBANK: KG965163 GENBANK: KG965164 GENBANK: KG965165 GENBANK: KG965166 GENBANK: KG965167 GENBANK: KG965168 GENBANK: KG965169 GENBANK: KG965170 GENBANK: KG965171 GENBANK: KG965172 GENBANK: KG965173 GENBANK: KG965174 GENBANK: KG965175 GENBANK: KG965176 GENBANK: KG965177 GENBANK: KG965178 GENBANK: KG965179 GENBANK: KG965180 GENBANK: KG965181 GENBANK: KG965182 GENBANK: KG965183 GENBANK: KG965184 GENBANK: KG965185 GENBANK: KG965186 GENBANK: KG965187 GENBANK: KG965188 GENBANK: KG965189 GENBANK: KG965190 GENBANK: KG965191 GENBANK: KG965192 GENBANK: KG965193 GENBANK: KG965194 GENBANK: KG965195 GENBANK: KG965196 GENBANK: KG965197 GENBANK: KG965198 GENBANK: KG965199 GENBANK: KG965200 GENBANK: KG965201 GENBANK: KG965202 GENBANK: KG965203 GENBANK: KG965204 GENBANK: KG965205 GENBANK: KG965206 GENBANK: KG965207 GENBANK: KG965208 GENBANK: KG965209 GENBANK: KG965210 GENBANK: KG965211 GENBANK: KG965212 GENBANK: KG965213 GENBANK: KG965214 GENBANK: KG965215 GENBANK: KG965216 GENBANK: KG965217 GENBANK: KG965218 GENBANK: KG965219 GENBANK: KG965220 GENBANK: KG965221 GENBANK: KG965222 GENBANK: KG965223 GENBANK: KG965224 GENBANK: KG965225 GENBANK: KG965226 GENBANK: KG965227 GENBANK: KG965228 GENBANK: KG965229 GENBANK: KG965230 GENBANK: KG965231 GENBANK: KG965232 GENBANK: KG965233 GENBANK: KG965234 GENBANK: KG965235 GENBANK: KG965236 GENBANK: KG965237 GENBANK: KG965238 GENBANK: KG965239 GENBANK: KG965240 GENBANK: KG965241 GENBANK: KG965242 GENBANK: KG965243 GENBANK: KG965244 GENBANK: KG965245 GENBANK: KG965246 GENBANK: KG965247 GENBANK: KG965248 GENBANK: KG965249 GENBANK: KG965250 GENBANK: KG965251 GENBANK: KG965252 GENBANK: KG965253 GENBANK: KG965254 GENBANK: KG965255 GENBANK: KG965256 GENBANK: KG965257 GENBANK: KG965258 GENBANK: KG965259 GENBANK: KG965260 GENBANK: KG965261 GENBANK: KG965262 GENBANK: KG965263 GENBANK: KG965264 GENBANK: KG965265 GENBANK: KG965266 GENBANK: KG965267 GENBANK: KG965268 GENBANK: KG965269 GENBANK: KG965270 GENBANK: KG965271 GENBANK: KG965272 GENBANK: KG965273 GENBANK: KG965274 GENBANK: KG965275 GENBANK: KG965276 GENBANK: KG965277 GENBANK: KG965278 GENBANK: KG965279 GENBANK: KG965280 GENBANK: KG965281 GENBANK: KG965282 GENBANK: KG965283 GENBANK: KG965284 GENBANK: KG965285 GENBANK: KG965286 GENBANK: KG965287 GENBANK: KG965288 GENBANK: KG965289 GENBANK: KG965290 GENBANK: KG965291 GENBANK: KG965292 GENBANK: KG965293 GENBANK: KG965294 GENBANK: KG965295 GENBANK: KG965296 GENBANK: KG965297 GENBANK: KG965298 GENBANK: KG965299 GENBANK: KG965300 GENBANK: KG965301 GENBANK: KG965302 GENBANK: KG965303 GENBANK: KG965304 GENBANK: KG965305 GENBANK: KG965306 GENBANK: KG965307 GENBANK: KG965308 GENBANK: KG965309 GENBANK: KG965310 GENBANK: KG965311 GENBANK: KG965312 GENBANK: KG965313 GENBANK: KG965314 GENBANK: KG965315 GENBANK: KG965316 GENBANK: KG965317 GENBANK: KG965318 GENBANK: KG965319 GENBANK: KG965320 GENBANK: KG965321 GENBANK: KG965322 GENBANK: KG965323 GENBANK: KG965324 GENBANK: KG965325 GENBANK: KG965326 GENBANK: KG965327 GENBANK: KG965328 GENBANK: KG965329 GENBANK: KG965330 GENBANK: KG965331 GENBANK: KG965332 GENBANK: KG965333 GENBANK: KG965334 GENBANK: KG965335 GENBANK: KG965336 GENBANK: KG965337 GENBANK: KG965338 GENBANK: KG965339 GENBANK: KG965340 GENBANK: KG965341 GENBANK: KG965342 GENBANK: KG965343 GENBANK: KG965344 GENBANK: KG965345 GENBANK: KG965346 GENBANK: KG965347 GENBANK: KG965348 GENBANK: KG965349 GENBANK: KG965350 GENBANK: KG965351 GENBANK: KG965352 GENBANK: KG965353 GENBANK: KG965354 GENBANK: KG965355 GENBANK: KG965356 GENBANK: KG965357 GENBANK: KG965358 GENBANK: KG965359 GENBANK: KG965360 GENBANK: KG965361 GENBANK: KG965362 GENBANK: KG965363 GENBANK: KG965364 GENBANK: KG965365 GENBANK: KG965366 GENBANK: KG965367 GENBANK: KG965368 GENBANK: KG965369 GENBANK: KG965370 GENBANK: KG965371 GENBANK: KG965372 GENBANK: KG965373 GENBANK: KG965374 GENBANK: KG965375 GENBANK: KG965376 GENBANK: KG965377 GENBANK: KG965378 GENBANK: KG965379 GENBANK: KG965380 GENBANK: KG965381 GENBANK: KG965382 GENBANK: KG965383 GENBANK: KG965384 GENBANK: KG965385 GENBANK: KG965386 GENBANK: KG965387 GENBANK: KG965388 GENBANK: KG965389 GENBANK: KG965390 GENBANK: KG965391 GENBANK: KG965392 GENBANK: KG965393 GENBANK: KG965394 GENBANK: KG965395 GENBANK: KG965396 GENBANK: KG965397 GENBANK: KG965398 GENBANK: KG965399 GENBANK: KG965400 GENBANK: KG965401 GENBANK: KG965402 GENBANK: KG965403 GENBANK: KG965404 GENBANK: KG965405 GENBANK: KG965406 GENBANK: KG965407 GENBANK: KG965408 GENBANK: KG965409 GENBANK: KG965410 GENBANK: KG965411 GENBANK: KG965412 GENBANK: KG965413 GENBANK: KG965414 GENBANK: KG965415 GENBANK: KG965416 GENBANK: KG965417 GENBANK: KG965418 GENBANK: KG965419 GENBANK: KG965420 GENBANK: KG965421 GENBANK: KG965422 GENBANK: KG965423 GENBANK: KG965424 GENBANK: KG965425 GENBANK: KG965426 GENBANK: KG965427 GENBANK: KG965428 GENBANK: KG965429 GENBANK: KG965430 GENBANK: KG965431 GENBANK: KG965432 GENBANK: KG965433 GENBANK: KG965434 GENBANK: KG965435 GENBANK: KG965436 GENBANK: KG965437 GENBANK: KG965438 GENBANK: KG965439 GENBANK: KG965440 GENBANK: KG965441 GENBANK: KG965442 GENBANK: KG965443 GENBANK: KG965444 GENBANK: KG965445 GENBANK: KG965446 GENBANK: KG965447 GENBANK: KG965448 GENBANK: KG965449 GENBANK: KG965450 GENBANK: KG965451 GENBANK: KG965452 GENBANK: KG965453 GENBANK: KG965454 GENBANK: KG965455 GENBANK: KG965456 GENBANK: KG965457 GENBANK: KG965458 GENBANK: KG965459 GENBANK: KG965460 GENBANK: KG965461 GENBANK: KG965462 GENBANK: KG965463 GENBANK: KG965464 GENBANK: KG965465 GENBANK: KG965466 GENBANK: KG965467 GENBANK: KG965468 GENBANK: KG965469 GENBANK: KG965470 GENBANK: KG965471 GENBANK: KG965472 GENBANK: KG965473 GENBANK: KG965474 GENBANK: KG965475 GENBANK: KG965476 GENBANK: KG965477 GENBANK: KG965478 GENBANK: KG965479 GENBANK: KG965480 GENBANK: KG965481 GENBANK: KG965482 GENBANK: KG965483 GENBANK: KG965484 GENBANK: KG965485 GENBANK: KG965486 GENBANK: KG965487 GENBANK: KG965488 GENBANK: KG965489 GENBANK: KG965490 GENBANK: KG965491 GENBANK: KG965492 GENBANK: KG965493 GENBANK: KG965494 GENBANK: KG965495 GENBANK: KG965496 GENBANK: KG965497 GENBANK: KG965498 GENBANK: KG965499 GENBANK: KG965500 GENBANK: KG965501 GENBANK: KG965502 GENBANK: KG965503 GENBANK: KG965504 GENBANK: KG965505 GENBANK: KG965506 GENBANK: KG965507 GENBANK: KG965508 GENBANK: KG965509 GENBANK: KG965510 GENBANK: KG965511 GENBANK: KG965512 GENBANK: KG965513 GENBANK: KG965514 GENBANK: KG965515 GENBANK: KG965516 GENBANK: KG965517 GENBANK: KG965518 GENBANK: KG965519 GENBANK: KG965520 GENBANK: KG965521 GENBANK: KG965522 GENBANK: KG965523 GENBANK: KG965524 GENBANK: KG965525 GENBANK: KG965526 GENBANK: KG965527 GENBANK: KG965528 GENBANK: KG965529 GENBANK: KG965530 GENBANK: KG965531 GENBANK: KG965532 GENBANK: KG965533 GENBANK: KG965534 GENBANK: KG965535 GENBANK: KG965536 GENBANK: KG965537 GENBANK: KG965538 GENBANK: KG965539 GENBANK: KG965540 GENBANK: KG965541 GENBANK: KG965542 GENBANK: KG965543 GENBANK: KG965544 GENBANK: KG965545 GENBANK: KG965546 GENBANK: KG965547 GENBANK: KG965548 GENBANK: KG965549 GENBANK: KG965550 GENBANK: KG965551 GENBANK: KG965552 GENBANK: KG965553 GENBANK: KG965554 GENBANK: KG965555 GENBANK: KG965556 GENBANK: KG965557 GENBANK: KG965558 GENBANK: KG965559 GENBANK: KG965560 GENBANK: KG965561 GENBANK: KG965562 GENBANK: KG965563 GENBANK: KG965564 GENBANK: KG965565 GENBANK: KG965566 GENBANK: KG965567 GENBANK: KG965568 GENBANK: KG965569 GENBANK: KG965570 GENBANK: KG965571 GENBANK: KG965572 GENBANK: KG965573 GENBANK: KG965574 GENBANK: KG965575 GENBANK: KG965576 GENBANK: KG965577 GENBANK: KG965578 GENBANK: KG965579 GENBANK: KG965580 GENBANK: KG965581 GENBANK: KG965582 GENBANK: KG965583 GENBANK: KG965584 GENBANK: KG965585 GENBANK: KG965586 GENBANK: KG965587 GENBANK: KG965588 GENBANK: KG965589 GENBANK: KG965590 GENBANK: KG965591 GENBANK: KG965592 GENBANK: KG965593 GENBANK: KG965594 GENBANK: KG965595 GENBANK: KG965596 GENBANK: KG965597 GENBANK: KG965598 GENBANK: KG965599 GENBANK: KG965600 GENBANK: KG965601 GENBANK: KG965602 GENBANK: KG965603 GENBANK: KG965604 GENBANK: KG965605 GENBANK: KG965606 GENBANK: KG965607 GENBANK: KG965608 GENBANK: KG965609 GENBANK: KG965610 GENBANK: KG965611 GENBANK: KG965612 GENBANK: KG965613 GENBANK: KG965614 GENBANK: KG965615 GENBANK: KG965616 GENBANK: KG965617 GENBANK: KG965618 GENBANK: KG965619 GENBANK: KG965620 GENBANK: KG965621 GENBANK: KG965622 GENBANK: KG965623 GENBANK: KG965624 GENBANK: KG965625 GENBANK: KG965626 GENBANK: KG965627 GENBANK: KG965628 GENBANK: KG965629 GENBANK: KG965630 GENBANK: KG965631 GENBANK: KG965632 GENBANK: KG965633 GENBANK: KG965634 GENBANK: KG965635 GENBANK: KG965636 GENBANK: KG965637 GENBANK: KG965638 GENBANK: KG965639 GENBANK: KG965640 GENBANK: KG965641 GENBANK: KG965642 GENBANK: KG965643 GENBANK: KG965644 GENBANK: KG965645 GENBANK: KG965646 GENBANK: KG965647 GENBANK: KG965648 GENBANK: KG965649 GENBANK: KG965650 GENBANK: KG965651 GENBANK: KG965652 GENBANK: KG965653 GENBANK: KG965654 GENBANK: KG965655 GENBANK: KG965656 GENBANK: KG965657 GENBANK: KG965658 GENBANK: KG965659 GENBANK: KG965660 GENBANK: KG965661 GENBANK: KG965662 GENBANK: KG965663 GENBANK: KG965664 GENBANK: KG965665 GENBANK: KG965666 GENBANK: KG965667 GENBANK: KG965668 GENBANK: KG965669 GENBANK: KG965670 GENBANK: KG965671 GENBANK: KG965672 GENBANK: KG965673 GENBANK: KG965674 GENBANK: KG965675 GENBANK: KG965676 GENBANK: KG965677 GENBANK: KG965678 GENBANK: KG965679 GENBANK: KG965680 GENBANK: KG965681 GENBANK: KG965682 GENBANK: KG965683 GENBANK: KG965684 GENBANK: KG965685 GENBANK: KG965686 GENBANK: KG965687 GENBANK: KG965688 GENBANK: KG965689 GENBANK: KG965690 GENBANK: KG965691 GENBANK: KG965692 GENBANK: KG965693 GENBANK: KG965694 GENBANK: KG965695 GENBANK: KG965696 GENBANK: KG965697 GENBANK: KG965698 GENBANK: KG965699 GENBANK: KG965700 GENBANK: KG965701 GENBANK: KG965702 GENBANK: KG965703 GENBANK: KG965704 GENBANK: KG965705 GENBANK: KG965706 GENBANK: KG965707 GENBANK: KG965708 GENBANK: KG965709 GENBANK: KG965710 GENBANK: KG965711 GENBANK: KG965712 GENBANK: KG965713 GENBANK: KG965714 GENBANK: KG965715 GENBANK: KG965716 GENBANK: KG965717 GENBANK: KG965718 GENBANK: KG965719 GENBANK: KG965720 GENBANK: KG965721 GENBANK: KG965722 GENBANK: KG965723 GENBANK: KG965724 GENBANK: KG965725 GENBANK: KG965726 GENBANK: KG965727 GENBANK: KG965728 GENBANK: KG965729 GENBANK: KG965730 GENBANK: KG965731 GENBANK: KG965732 GENBANK: KG965733 GENBANK: KG965734 GENBANK: KG965735 GENBANK: KG965736 GENBANK: KG965737 GENBANK: KG965738 GENBANK: KG965739 GENBANK: KG965740 GENBANK: KG965741 GENBANK: KG965742 GENBANK: KG965743 GENBANK: KG965744 GENBANK: KG965745 GENBANK: KG965746 GENBANK: KG965747 GENBANK: KG965748 GENBANK: KG965749 GENBANK: KG965750 GENBANK: KG965751 GENBANK: KG965752 GENBANK: KG965753 GENBANK: KG965754 GENBANK: KG965755 GENBANK: KG965756 GENBANK: KG965757 GENBANK: KG965758 GENBANK: KG965759 GENBANK: KG965760 GENBANK: KG965761 GENBANK: KG965762 GENBANK: KG965763 GENBANK: KG965764 GENBANK: KG965765 GENBANK: KG965766 GENBANK: KG965767 GENBANK: KG965768 GENBANK: KG965769 GENBANK: KG965770 GENBANK: KG965771