Bioinformatics Support, Infrastructure and Training (483 publications)

DOI Crossref

Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing

Mazzurana L, Czarnewski P, Jonsson V, ..., Almer S, Mjösberg J

Cell Res - (-) - [2021-01-08; online 2021-01-08]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG)

DOI Crossref

Genome‐wide SNP markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species

Rengefors K, Gollnisch R, Sassenhagen I, ..., Bassham S, Ahrén D

Mol Ecol - (-) - [2021-01-00; online 2021-01-00]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Genetic Risk Score for Serum 25-Hydroxyvitamin D Concentration Helps to Guide Personalized Vitamin D Supplementation in Healthy Finnish Adults.

Sallinen RJ, Dethlefsen O, Ruotsalainen S, ..., Kaunisto MA, Kallioniemi O

pii: 6056509

J. Nutr. - (-) - [2020-12-31; online 2020-12-31]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

Halvorsen M, Huh R, Oskolkov N, ..., Sullivan PF, Szatkiewicz JP

Nat Commun 11 (1) - [2020-12-00; online 2020-04-15]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service] Systems Biology [Collaborative]

DOI Crossref

Spatio-molecular domains identified in the mouse subthalamic nucleus and neighboring glutamatergic and GABAergic brain structures

Wallén-Mackenzie Å, Dumas S, Papathanou M, ..., König N, Björklund ÅK

Commun Biol 3 (1) - [2020-12-00; online 2020-07-03]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG)

PubMed DOI Crossref

Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei

Montoliu-Nerin M, Sánchez-García M, Bergin C, ..., Johannesson H, Rosling A

Sci Rep 10 (1) - [2020-12-00; online 2020-01-28]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Microbial Single Cell Genomics [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A spontaneous mitonuclear epistasis converging on Rieske Fe-S protein exacerbates complex III deficiency in mice

Purhonen J, Grigorjev V, Ekiert R, ..., Fellman V, Kallijärvi J

Nat Commun 11 (1) - [2020-12-00; online 2020-01-16]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells.

Appelberg S, Gupta S, Svensson Akusjärvi S, ..., Mirazimi A, Neogi U

pmc: PMC7473213

Emerg Microbes Infect 9 (1) 1748-1760 [2020-12-00; online 2020-07-22]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach

von der Heyde B, Emmanouilidou A, Mazzaferro E, ..., Brooke HL, den Hoed M

Sci Rep 10 (1) 11831 [2020-12-00; online 2020-07-16]

BioImage Informatics Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Genome Engineering Zebrafish [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]

DOI Crossref

Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson’s disease

Tiklová K, Nolbrant S, Fiorenzano A, ..., Perlmann T, Parmar M

Nat Commun 11 (1) - [2020-12-00; online 2020-05-15]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Naming the untouchable – environmental sequences and niche partitioning as taxonomical evidence in fungi

Kalsoom Khan F, Kluting K, Tångrot J, ..., Ryberg M, Rosling A

IMA Fungus 11 (1) - [2020-12-00; online 2020-11-03]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

The influence of common polygenic risk and gene sets on social skills group training response in autism spectrum disorder

Li D, Choque-Olsson N, Jiao H, ..., Bölte S, Tammimies K

npj Genom. Med. 5 (1) - [2020-12-00; online 2020-10-12]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion

Almeida P, Proux-Wera E, Churcher A, ..., Berlin S, Mank JE

BMC Biol. 18 (1) - [2020-12-00; online 2020-06-30]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

DOI Crossref

Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes

Sakthikumar S, Roy A, Haseeb L, ..., Lindblad-Toh K, Forsberg-Nilsson K

Genome Biol. 21 (1) - [2020-12-00; online 2020-06-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

New Insights into the Microbial Profiles of Infected Root Canals in Traumatized Teeth

Manoharan L, Brundin M, Rakhimova O, Chávez de Paz L, Romani Vestman N

J Clin Med 9 (12) 3877 [2020-11-28; online 2020-11-28]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Comparison of DNA Methylation Profiles of Hemostatic Genes between Liver Tissue and Peripheral Blood within Individuals.

Olsson Lindvall M, Angerfors A, Andersson B, ..., Stanne TM, Jern C

Thromb. Haemost. - (-) - [2020-11-17; online 2020-11-17]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Uncemented or cemented stems in first-time revision total hip replacement? An observational study of 867 patients including assessment of femoral bone defect size.

Tyson Y, Hillman C, Majenburg N, ..., Mohaddes M, Hailer NP

Acta Orthop - (-) 1-8 [2020-11-12; online 2020-11-12]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis

Mahmud AKMF, Nilsson K, Fahlgren A, ..., Avican K, Fällman M

mSystems 5 (6) - [2020-11-10; online 2020-11-10]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Drought legacy affects microbial community trait distributions related to moisture along a savanna‐grassland precipitation gradient

Leizeaga A, Hicks LC, Manoharan L, Hawkes CV, Rousk J

J Ecol - (-) - [2020-11-05; online 2020-11-05]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Metabolic characterization of plasma and cyst fluid from cystic precursors to pancreatic cancer patients reveal metabolic signatures of bacterial infection.

Morgell A, Reisz JA, Ateeb Z, ..., Sällberg Chen M, D'Alessandro A

pmc: PMC7654893

medRxiv - (-) - [2020-11-04; online 2020-11-04]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Epigenetic alterations in skin homing CD4 +CLA+ T cells of atopic dermatitis patients.

Acevedo N, Benfeitas R, Katayama S, ..., Söderhäll C, Scheynius A

pii: 10.1038/s41598-020-74798-z pmc: PMC7582180

Sci Rep 10 (1) 18020 [2020-10-22; online 2020-10-22]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

PubMed DOI Crossref

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise

Peona V, Blom MPK, Xu L, ..., Irestedt M, Suh A

Mol Ecol Resour 21 (1) 263-286 [2020-10-10; online 2020-10-10]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Whole genome sequencing of apparently mutation-negative MEN1 patients

Backman S, Bajic D, Crona J, ..., Skogseid B, Stålberg P

Eur. J. Endocrinol. 182 (1) 35-45 [2020-10-00; online 2019-10-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Sources of variation in cell-type RNA-Seq profiles.

Gustafsson J, Held F, Robinson JL, ..., Jörnsten R, Nielsen J

pii: PONE-D-20-18758 pmc: PMC7505444

PLoS ONE 15 (9) e0239495 [2020-09-21; online 2020-09-21]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

DOI Crossref

The methylation landscape and its role in domestication and gene regulation in the chicken

Höglund A, Henriksen R, Fogelholm J, ..., Jensen P, Wright D

Nat Ecol Evol 4 (12) 1713-1724 [2020-09-21; online 2020-09-21]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Hypoxia inducible factor-2α importance for migration, proliferation, and self-renewal of trunk neural crest cells.

Niklasson CU, Fredlund E, Monni E, ..., Bronner ME, Mohlin S

Dev. Dyn. - (-) - [2020-09-17; online 2020-09-17]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

PubMed DOI Crossref

Reconstruction of the birth of a male sex chromosome present in Atlantic herring.

Rafati N, Chen J, Herpin A, ..., Schartl M, Andersson L

pii: 2009925117

Proc. Natl. Acad. Sci. U.S.A. 117 (39) 24359-24368 [2020-09-16; online 2020-09-16]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Transcriptome analysis of EPO and GFP HEK293 Cell-lines Reveal Shifts in Energy and ER Capacity Support Improved Erythropoietin Production in HEK293F Cells

Saghaleyni R, Malm M, Zrimec J, ..., Robinson JL, Rockberg J

- - (-) - [2020-09-16; online 2020-09-16]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Integration of molecular profiles in a longitudinal wellness profiling cohort.

Tebani A, Gummesson A, Zhong W, ..., Uhlen M, Fagerberg L

pii: 10.1038/s41467-020-18148-7

Nat Commun 11 (1) 4487 [2020-09-08; online 2020-09-08]

Autoimmunity Profiling [Collaborative] Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Mass Cytometry [Collaborative] Swedish Metabolomics Centre (SMC) [Collaborative] Translational Plasma Profiling [Collaborative]

DOI Crossref

Association between breast cancer risk and disease aggressiveness: Characterizing underlying gene expression patterns

Ugalde‐Morales E, Grassmann F, Humphreys K, ..., Hall P, Czene K

Int. J. Cancer - (-) - [2020-09-05; online 2020-09-05]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Genome sequence of segmented filamentous bacteria present in the human intestine.

Jonsson H, Hugerth LW, Sundh J, Lundin E, Andersson AF

pii: 10.1038/s42003-020-01214-7 pmc: PMC7474095

Commun Biol 3 (1) 485 [2020-09-04; online 2020-09-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.

Dias JM, Alekseenko Z, Jeggari A, ..., Iber D, Ericson J

pii: 6/38/eaba8196 pmc: PMC7494341

Sci Adv 6 (38) - [2020-09-00; online 2020-09-16]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure

Singh A, Nylander JAA, Schnürer A, Bongcam-Rudloff E, Müller B

Front Microbiol 11 (-) - [2020-08-27; online 2020-08-27]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Metagenome assembled-genomes reveal similar functional profiles of CPR/Patescibacteria phyla in soils.

Nascimento Lemos L, Manoharan L, William Mendes L, ..., Satler Pylro V, Tsai SM

Environ Microbiol Rep 12 (6) 651-655 [2020-08-19; online 2020-08-19]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Association between proteomics and obstructive sleep apnea phenotypes in a community-based cohort of women.

Ljunggren M, Theorell-Haglöw J, Freyhult E, ..., Janson C, Lindberg E

J Sleep Res 29 (4) e13041 [2020-08-00; online 2020-04-08]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros

Lord E, Dussex N, Kierczak M, ..., Götherström A, Dalén L

Current Biology 30 (19) 3871-3879.e7 [2020-08-00; online 2020-08-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Prototypical pacemaker neurons interact with the resident microbiota.

Klimovich A, Giacomello S, Björklund Å, ..., Adameyko I, Bosch TCG

pii: 1920469117 pmc: PMC7395494

Proc. Natl. Acad. Sci. U.S.A. 117 (30) 17854-17863 [2020-07-28; online 2020-07-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

A framework to assess the quality and impact of bioinformatics training across ELIXIR

Gurwitz KT, Singh Gaur P, Bellis LJ, ..., Morgan SL, Rustici G

PLoS Comput. Biol. 16 (7) e1007976 [2020-07-23; online 2020-07-23]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

PubMed DOI Crossref

Epigenome-wide cross-tissue correlation of human bone and blood DNA methylation - can blood be used as a surrogate for bone?

Ebrahimi P, Luthman H, McGuigan FE, Akesson KE

Epigenetics - (-) 1-14 [2020-07-21; online 2020-07-21]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Analysis of DNA methylation patterns in the tumor immune microenvironment of metastatic melanoma

Mitra S, Lauss M, Cabrita R, ..., Brown KM, Jönsson G

Mol Oncol 14 (5) 933-950 [2020-05-00; online 2020-03-21]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Building blocks are synthesized on demand during the yeast cell cycle

Campbell K, Westholm J, Kasvandik S, ..., Mormino M, Nielsen J

Proc Natl Acad Sci USA 117 (14) 7575-7583 [2020-04-07; online 2020-03-25]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

DOI Crossref

Guidelines for curriculum and course development in higher education and training

Tractenberg RE, Lindvall JM, Attwood T, Via A

- - (-) - [2020-04-03; online 2020-04-03]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

DOI Crossref

Comparative analysis of genome-wide DNA methylation in Neurospora

Hosseini S, Meunier C, Nguyen D, Reimegård J, Johannesson H

Epigenetics 15 (9) 1-16 [2020-03-31; online 2020-03-31]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

An atlas of human metabolism.

Robinson JL, Kocabaş P, Wang H, ..., Uhlén M, Nielsen J

pii: 13/624/eaaz1482 pmc: PMC7331181 mid: NIHMS1590510

Sci Signal 13 (624) - [2020-03-24; online 2020-03-24]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

DOI Crossref

Footprints of natural selection at the mannose-6-phosphate isomerase locus in barnacles

Nunez JCB, Flight PA, Neil KB, ..., Blomberg A, Rand DM

Proc Natl Acad Sci USA 117 (10) 201918232 [2020-02-25; online 2020-02-25]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

Garcia M, Juhos S, Larsson M, ..., Käller M, Nystedt B

F1000Res 9 (-) 63 [2020-01-29; online 2020-01-29]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] Clinical Genomics Stockholm [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Transcriptomic profiling of skeletal muscle adaptations to exercise and inactivity.

Pillon NJ, Gabriel BM, Dollet L, ..., Krook A, Zierath JR

pii: 10.1038/s41467-019-13869-w pmc: PMC6981202

Nat Commun 11 (1) 470 [2020-01-24; online 2020-01-24]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

DNA methylation changes in Down syndrome derived neural iPSCs uncover co-dysregulation of ZNF and HOX3 families of transcription factors.

Laan L, Klar J, Sobol M, ..., Schuster J, Dahl N

pii: 10.1186/s13148-019-0803-1 pmc: PMC6950999

Clin Epigenetics 12 (1) 9 [2020-01-08; online 2020-01-08]

Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A Comprehensive Sequencing-Based Analysis of Allelic Methylation Patterns in Hemostatic Genes in Human Liver

Olsson Lindvall M, Davila Lopez M, Klasson S, ..., Stanne TM, Jern C

Thromb. Haemost. 120 (02) 229-242 [2019-12-30; online 2019-12-30]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]

PubMed DOI Crossref

Gene transfer across species boundaries in bryophytes: evidence from major life cycle stages in Homalothecium lutescens and H. sericeum.

Sawangproh W, Hedenäs L, Lang AS, Hansson B, Cronberg N

pii: 5686322

Ann. Bot. - (-) - [2019-12-24; online 2019-12-24]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Consequences of past climate change and recent human persecution on mitogenomic diversity in the arctic fox

Larsson P, von Seth J, Hagen IJ, ..., Stanton DWG, Dalén L

Phil. Trans. R. Soc. B 374 (1788) 20190212 [2019-12-23; online 2019-11-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Gene Expression Alterations during Development of Castration-Resistant Prostate Cancer Are Detected in Circulating Tumor Cells.

Josefsson A, Larsson K, Freyhult E, Damber J, Welén K

pii: cancers12010039

Cancers (Basel) 12 (1) - [2019-12-21; online 2019-12-21]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.

Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J

pii: S0092-8674(19)31282-6

Cell 179 (7) 1647-1660.e19 [2019-12-12; online 2019-12-14]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG) [Service] In Situ Sequencing (ISS) [Technology development] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Plasma Lipidome and Prediction of Type 2 Diabetes in the Population-Based Malmö Diet and Cancer Cohort

Fernandez C, Surma MA, Klose C, ..., Simons K, Melander O

Dia Care - (-) dc191199 [2019-12-08; online 2019-12-08]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats

Dong Y, Sanford RA, Inskeep WP, ..., Fried GA, Fouke BW

Astrobiology 19 (12) 1442-1458 [2019-12-01; online 2019-12-01]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Transmission dynamics study of tuberculosis isolates with whole genome sequencing in southern Sweden

Alaridah N, Hallbäck ET, Tångrot J, ..., Kaijser B, Godaly G

Sci Rep 9 (1) - [2019-12-00; online 2019-03-20]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Transcriptomes of Dravet syndrome iPSC derived GABAergic cells reveal dysregulated pathways for chromatin remodeling and neurodevelopment

Schuster J, Laan L, Klar J, ..., Birnir B, Dahl N

Neurobiology of Disease 132 (-) 104583 [2019-12-00; online 2019-12-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

TAF1, associated with intellectual disability in humans, is essential for embryogenesis and regulates neurodevelopmental processes in zebrafish

Gudmundsson S, Wilbe M, Filipek-Górniok B, ..., Annerén G, Bondeson ML

Sci Rep 9 (1) - [2019-12-00; online 2019-07-24]

BioImage Informatics [Collaborative] Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics Uppsala [Collaborative] Genome Engineering Zebrafish [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture

Gelali E, Girelli G, Matsumoto M, ..., Crosetto N, Bienko M

Nat Commun 10 (1) - [2019-12-00; online 2019-04-09]

Advanced FISH Technologies [Technology development] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

DOI Crossref

Association between Copy Number Variation and Response to Social Skills Training in Autism Spectrum Disorder

Tammimies K, Li D, Rabkina I, ..., Choque-Olsson N, Bölte S

Sci Rep 9 (1) - [2019-12-00; online 2019-07-08]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]

DOI Crossref

Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data

Franco M, Jeggari A, Peuget S, ..., Selivanova G, Alexeyenko A

Sci Rep 9 (1) - [2019-12-00; online 2019-02-20]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

Bysani M, Agren R, Davegårdh C, ..., Bacos K, Ling C

GEO: GSE129383

Sci Rep 9 (1) - [2019-12-00; online 2019-05-23]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]

PubMed DOI Crossref

Improved power and precision with whole genome sequencing data in genome-wide association studies of inflammatory biomarkers

Höglund J, Rafati N, Rask-Andersen M, ..., Ek WE, Johansson Å

Sci Rep 9 (1) - [2019-12-00; online 2019-11-14]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Whole genome DNA sequencing provides an atlas of somatic mutagenesis in healthy human cells and identifies a tumor-prone cell type

Franco I, Helgadottir HT, Moggio A, ..., Supek F, Eriksson M

Genome Biol. 20 (1) - [2019-12-00; online 2019-12-18]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The genomic footprint of sexual conflict.

Sayadi A, Martinez Barrio A, Immonen E, ..., Nystedt B, Arnqvist G

pii: 10.1038/s41559-019-1041-9

Nat Ecol Evol 3 (12) 1725-1730 [2019-12-00; online 2019-11-18]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

DOI Crossref

Dysregulated autophagy in muscle precursor cells from humans with type 2 diabetes

Henriksen TI, Wigge LV, Nielsen J, ..., Sandri M, Scheele C

Sci Rep 9 (1) - [2019-12-00; online 2019-06-03]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Breast cancer quantitative proteome and proteogenomic landscape

Johansson HJ, None , Socciarelli F, ..., Børresen-Dale AL, Lehtiö J

Nat Commun 10 (1) - [2019-12-00; online 2019-04-08]

Advanced Light Microscopy (ALM) [Service] Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Proteogenomics [Technology development]

PubMed DOI Crossref

Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing

Hård J, Al Hakim E, Kindblom M, ..., Mold JE, Frisén J

Genome Biol. 20 (1) - [2019-12-00; online 2019-04-01]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

Rojas-Macias MA, Mariethoz J, Andersson P, ..., Lisacek F, Karlsson NG

Nat Commun 10 (1) - [2019-12-00; online 2019-07-22]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] Glycoproteomics [Technology development]

DOI Crossref

Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development

Tiklová K, Björklund ÅK, Lahti L, ..., Parmar M, Perlmann T

GEO: GSE116138

Nat Commun 10 (1) - [2019-12-00; online 2019-02-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] In Situ Sequencing (ISS) [Collaborative]

PubMed DOI Crossref

From cytogenetics to cytogenomics: whole-genome sequencing as a first-line test comprehensively captures the diverse spectrum of disease-causing genetic variation underlying intellectual disability

Lindstrand A, Eisfeldt J, Pettersson M, ..., Lundin J, Nilsson D

Genome Med 11 (1) 68 [2019-12-00; online 2019-11-07]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Stockholm [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The Mastery Rubric for Bioinformatics: A tool to support design and evaluation of career-spanning education and training.

Tractenberg RE, Lindvall JM, Attwood TK, Via A

pii: PONE-D-19-15839 pmc: PMC6879125

PLoS ONE 14 (11) e0225256 [2019-11-26; online 2019-11-26]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

DOI Crossref

Optimizing cultivation of Cordyceps militaris for fast growth and cordycepin overproduction using rational design of synthetic media

Raethong N, Wang H, Nielsen J, Vongsangnak W

Computational and Structural Biotechnology Journal 18 (-) 1-8 [2019-11-26]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells

Joshi RN, Stadler C, Lehmann R, ..., Schmidt A, Vesterlund M

Front Immunol 10 (-) - [2019-11-26; online 2019-11-26]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Cell Profiling [Collaborative] Proteogenomics [Technology development]

PubMed DOI Crossref

Lithium treatment reverses irradiation-induced changes in rodent neural progenitors and rescues cognition.

Zanni G, Goto S, Fragopoulou AF, ..., Hermanson O, Blomgren K

pii: 10.1038/s41380-019-0584-0

Mol. Psychiatry - (-) - [2019-11-14; online 2019-11-14]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Daytime melatonin levels in saliva are associated with inflammatory markers and anxiety disorders.

Sundberg I, Rasmusson AJ, Ramklint M, ..., Ekselius L, Cunningham JL

pii: S0306-4530(19)31255-7

Psychoneuroendocrinology 112 (-) 104514 [2019-11-14; online 2019-11-14]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Biomarkers [Service]

DOI Crossref

On-demand virtual research environments using microservices

Capuccini M, Larsson A, Carone M, ..., Toor S, Spjuth O

- 5 (-) e232 [2019-11-11; online 2019-11-11]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Leveraging European infrastructures to access 1 million human genomes by 2022.

Saunders G, Baudis M, Becker R, ..., Blomberg N, Scollen S

pii: 10.1038/s41576-019-0156-9

Nat. Rev. Genet. 20 (11) 693-701 [2019-11-00; online 2019-08-27]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The architecture of the Plasmodiophora brassicae nuclear and mitochondrial genomes.

Stjelja S, Fogelqvist J, Tellgren-Roth C, Dixelius C

pii: 10.1038/s41598-019-52274-7 pmc: PMC6823432

Sci Rep 9 (1) 15753 [2019-10-31; online 2019-10-31]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Assembly and Analysis of the Genome Sequence of the Yeast Brettanomyces naardenensis CBS 7540.

Tiukova IA, Jiang H, Dainat J, ..., Gu Z, Passoth V

pii: microorganisms7110489

Microorganisms 7 (11) - [2019-10-26; online 2019-10-26]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

DOI Crossref

Transcriptomic Profiling of Skeletal Muscle Adaptations to Exercise and Inactivity

Pillon NJ, Gabriel BM, Dollet L, ..., Krook A, Zierath JR

- - (-) - [2019-10-22; online 2019-10-22]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Genes and variants in hematopoiesis-related pathways are associated with gemcitabine/carboplatin-induced thrombocytopenia.

Björn N, Sigurgeirsson B, Svedberg A, ..., Lundeberg J, Gréen H

pii: 10.1038/s41397-019-0099-8

Pharmacogenomics J. - (-) - [2019-10-15; online 2019-10-15]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Interoperable and scalable data analysis with microservices: applications in metabolomics

Emami Khoonsari P, Moreno P, Bergmann S, ..., Kultima K, Spjuth O

- 35 (19) 3752-3760 [2019-10-01; online 2019-03-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Dissecting the Effects of Selection and Mutation on Genetic Diversity in Three Wood White (Leptidea) Butterfly Species.

Talla V, Soler L, Kawakami T, ..., Wiklund C, Backström N

pii: 5580498 pmc: PMC6795238

Genome Biol Evol 11 (10) 2875-2886 [2019-10-01; online 2019-10-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species

Kurland S, Wheat CW, Paz Celorio Mancera M, ..., Ryman N, Laikre L

Ecol Evol 9 (19) 11448-11463 [2019-10-00; online 2019-09-26]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Industrial wastewater treatment plant enriches antibiotic resistance genes and alters the structure of microbial communities

Bengtsson-Palme J, Milakovic M, Švecová H, ..., Grabic R, Udikovic-Kolic N

Water Research 162 (-) 437-445 [2019-10-00; online 2019-10-00]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Clinical candidate and genistein analogue AXP107-11 has chemoenhancing functions in pancreatic adenocarcinoma through G protein-coupled estrogen receptor signaling.

Mesmar F, Dai B, Ibrahim A, ..., Fleming J, Williams C

Cancer Med - (-) - [2019-09-30; online 2019-09-30]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota

Manoharan L, Kozlowski JA, Murdoch RW, ..., Sousa FL, Schleper C

MBio 10 (5) - [2019-09-10; online 2019-09-10]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Genome Sequencing of Pleurozium schreberi: The Assembled and Annotated Draft Genome of a Pleurocarpous Feather Moss.

Pederson ERA, Warshan D, Rasmussen U

pii: g3.119.400279 pmc: PMC6723128 figshare: 10.6084/m9.figshare.7775951

G3 (Bethesda) 9 (9) 2791-2797 [2019-09-04; online 2019-09-04]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The bio.tools registry of software tools and data resources for the life sciences.

Ison J, Ienasescu H, Chmura P, ..., Løngreen P, Brunak S

pii: 10.1186/s13059-019-1772-6 pmc: PMC6691543

Genome Biol. 20 (1) 164 [2019-08-12; online 2019-08-12]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Lack of gene flow: Narrow and dispersed differentiation islands in a triplet of Leptidea butterfly species

Talla V, Johansson A, Dincă V, ..., Wiklund C, Backström N

ENA: PRJEB21838

Mol Ecol 28 (6) 3756-3770 [2019-08-08; online 2019-08-08]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Evolved for success in novel environments: The round goby genome

Adrian-Kalchhauser I, Blomberg A, Larsson T, ..., Schloissnig S, Winkler S

- - (-) - [2019-07-19; online 2019-07-19]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files

Wik E, Olin H, Haughey C, Klasson L, Dainat J

JOSS 4 (39) 1344 [2019-07-07; online 2019-07-07]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Single cell analysis of autism patient with bi-allelic NRXN1-alpha deletion reveals skewed fate choice in neural progenitors and impaired neuronal functionality

Lam M, Moslem M, Bryois J, ..., Sullivan PF, Falk A

Experimental Cell Research 383 (1) 111469 [2019-07-00; online 2019-07-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Hemostatic Genes Exhibit a High Degree of Allele-Specific Regulation in Liver.

Olsson Lindvall M, Hansson L, Klasson S, ..., Jern C, Stanne TM

Thromb. Haemost. 119 (7) 1072-1083 [2019-07-00; online 2019-04-29]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]

PubMed DOI Crossref

Comment on 'AIRE-deficient patients harbor unique high-affinity disease-ameliorating autoantibodies'.

Landegren N, Rosen LB, Freyhult E, ..., Anderson M, Kämpe O

pii: 43578 pmc: PMC6597240

Elife 8 (-) - [2019-06-27; online 2019-06-27]

Autoimmunity Profiling [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

DOI Crossref

Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis

Lundmark A, Hu YOO, Huss M, ..., Andersson AF, Yucel-Lindberg T

Front. Cell. Infect. Microbiol. 9 (-) - [2019-06-21; online 2019-06-21]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Shotgun Environmental DNA, Pollen, and Macrofossil Analysis of Lateglacial Lake Sediments From Southern Sweden

Parducci L, Alsos IG, Unneberg P, ..., Slotte T, Wohlfarth B

Front. Ecol. Evol. 7 (-) 189 [2019-06-20; online 2019-06-20]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Single-nuclei transcriptomic analysis of the subthalamic nucleus reveals different Pitx2-positive subpopulations

Papathanou M, Björklund ÅK, Martis-Thiele MM, Wallén-Mackenzie Å

- - (-) - [2019-06-20; online 2019-06-20]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Microbiota data from low biomass milk samples is markedly affected by laboratory and reagent contamination

Dahlberg J, Sun L, Persson Waller K, ..., Agenäs S, Dicksved J

PLoS ONE 14 (6) e0218257 [2019-06-13; online 2019-06-13]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

Lampa S, Dahlö M, Alvarsson J, Spjuth O

Gigascience 8 (5) - [2019-05-01; online 2019-04-26]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis.

Tiukova IA, Pettersson ME, Hoeppner MP, ..., Söderberg J, Passoth V

pii: PONE-D-18-32895 pmc: PMC6493715

PLoS ONE 14 (5) e0215077 [2019-05-01; online 2019-05-01]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Software engineering for scientific big data analysis

Grüning BA, Lampa S, Vaudel M, Blankenberg D

Gigascience 8 (5) - [2019-05-01; online 2019-05-23]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

PKCζ facilitates lymphatic metastatic spread of prostate cancer cells in a mice xenograft model

Zang G, Mu Y, Gao L, Bergh A, Landström M

Oncogene 38 (22) 4215-4231 [2019-05-00; online 2019-01-31]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Gene expression profile of extraocular muscles following resection strabismus surgery

Rodríguez MA, Sandgren Hochhard K, Vicente A, Liu JX, Pedrosa Domellöf F

Experimental Eye Research 182 (-) 182-193 [2019-05-00; online 2019-05-00]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Pervasive hybridizations in the history of wheat relatives.

Glémin S, Scornavacca C, Dainat J, ..., David J, Ranwez V

pii: aav9188 pmc: PMC6494498

Sci Adv 5 (5) eaav9188 [2019-05-00; online 2019-05-01]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Somatic mutation that affects transcription factor binding upstream of CD55 in the temporal cortex of a late-onset Alzheimer disease patient

Helgadottir HT, Lundin P, Wallén Arzt E, ..., Graff C, Eriksson M

Hum Mol Genet 28 (16) 2675-2685 [2019-04-24; online 2019-04-24]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The complex barnacle perfume: identification of waterborne pheromone homologues in Balanus improvisus and their differential expression during settlement

Abramova A, Lind U, Blomberg A, Rosenblad MA

Biofouling 35 (4) 416-428 [2019-04-21; online 2019-05-30]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions

Sobol M, Klar J, Laan L, ..., Falk A, Dahl N

Mol Neurobiol 56 (10) 7113-7127 [2019-04-13; online 2019-04-13]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

DOI Crossref

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

Drysdale R, Cook CE, Petryszak R, ..., McEntyre J, None

- - (-) - [2019-04-05; online 2019-04-05]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis

Vázquez Bernat N, Corcoran M, Hardt U, ..., Martin M, Karlsson Hedestam GB

Front Immunol 10 (-) - [2019-04-05; online 2019-04-05]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Single-molecule genome assembly of the BasketWillow, Salix viminalis, reveals earliest stages of sex chromosome expansion

Almeida P, Proux-Wera E, Churcher A, ..., Berlin S, Mank JE

- - (-) - [2019-03-28; online 2019-03-28]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis

Rentoft M, Svensson D, Sjödin A, ..., Melin BS, Johansson E

PLoS ONE 14 (3) e0213350 [2019-03-27; online 2019-03-27]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]

DOI Crossref

Helicase/SUMO-targeted ubiquitin ligase Uls1 interacts with the Holliday junction resolvase Yen1

Bauer SL, Chen J, Åström SU

PLoS ONE 14 (3) e0214102 [2019-03-21; online 2019-03-21]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

An ABCA4 loss-of-function mutation causes a canine form of Stargardt disease

Mäkeläinen S, Gòdia M, Hellsand M, ..., Andersson G, Bergström TF

PLoS Genet. 15 (3) e1007873 [2019-03-19; online 2019-03-19]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Pax6 and KDM5C co-occupy a subset of developmentally critical genes including Notch signaling regulators in neural progenitors

Gaudenzi G, Dethlefsen O, Walfridsson J, Hermanson O

- - (-) - [2019-03-16; online 2019-03-16]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

The Interactome of Palmitoyl-Protein Thioesterase 1 (PPT1) Affects Neuronal Morphology and Function

Sapir T, Segal M, Grigoryan G, ..., Segal M, Reiner O

Front Cell Neurosci 13 (-) - [2019-03-13; online 2019-03-13]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

Andrade P, Pinho C, Pérez i de Lanuza G, ..., Andersson L, Carneiro M

Proc Natl Acad Sci USA - (-) 201820320 [2019-02-28; online 2019-02-28]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

DOI Crossref

Rostania revised: testing generic delimitations in Collemataceae (Peltigerales, Lecanoromycetes)

Košuthová A, Westberg M, Otálora MAG, Wedin M

MycoKeys 47 (-) 17-33 [2019-02-20; online 2019-02-20]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

DOI Crossref

Plasma Profiles of Inflammatory Markers Associated With Active Tuberculosis in Antiretroviral Therapy-Naive Human Immunodeficiency Virus-Positive Individuals

Olsson O, Björkman P, Jansson M, ..., Carlsson F, Skogmar S

- 6 (2) - [2019-02-01; online 2019-01-31]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Ultrasensitive immunoprofiling of plasma extracellular vesicles identifies syndecan-1 as a potential tool for minimally invasive diagnosis of glioma.

Indira Chandran V, Welinder C, Månsson AS, ..., Sundgren PC, Belting M

pii: 1078-0432.CCR-18-2946

Clin. Cancer Res. - (-) - [2019-01-24; online 2019-01-24]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Proteogenomics [Technology development] Targeted and Structural Proteomics [Service]

PubMed DOI Crossref

Transformation of mature mouse B cells into malignant plasma cells in vitro via introduction of defined genetic elements.

Högstrand K, Lindvall JM, Sundblad A, Grandien A

Eur. J. Immunol. - (-) - [2019-01-21; online 2019-01-21]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The genetic diversity and evolution of diatom-diazotroph associations highlights traits favoring symbiont integration.

Caputo A, Nylander JAA, Foster RA

pii: 5281432

FEMS Microbiol. Lett. - (-) - [2019-01-09; online 2019-01-09]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Targeted Delivery of Stk25 Antisense Oligonucleotides to Hepatocytes Protects Mice Against Nonalcoholic Fatty Liver Disease

Cansby E, Nuñez-Durán E, Magnusson E, ..., Aghajan M, Mahlapuu M

Cellular and Molecular Gastroenterology and Hepatology 7 (3) 597-618 [2019-00-00; online 2019-00-00]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

DOI Crossref

Zebrafish larvae as a model system for systematic characterization of drugs and genes in dyslipidemia and atherosclerosis

Bandaru MK, Emmanouilidou A, Ranefall P, ..., Ingelsson E, den Hoed M

- - (-) - [2018-12-20; online 2018-12-20]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud.

Peters K, Bradbury J, Bergmann S, ..., Zanetti G, Steinbeck C

pii: 5232984

Gigascience - (-) - [2018-12-07; online 2018-12-07]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Transcriptional and Epigenetic Changes Influencing Skeletal Muscle Metabolism in Women With Polycystic Ovary Syndrome.

Nilsson E, Benrick A, Kokosar M, ..., Ling C, Stener-Victorin E

pii: 5063490

J. Clin. Endocrinol. Metab. 103 (12) 4465-4477 [2018-12-01; online 2018-08-17]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Impact of forced fatty acid synthesis on metabolism and physiology of Saccharomyces cerevisiae.

Gossing M, Smialowska A, Nielsen J

pii: 5086656

FEMS Yeast Res. 18 (8) - [2018-12-01; online 2018-09-01]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A major locus controls local adaptation and adaptive life history variation in a perennial plant

Wang J, Ding J, Tan B, ..., Street NR, Ingvarsson PK

SRA: PRJNA297202

Genome Biol. 19 (1) - [2018-12-00; online 2018-06-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow

Zhu Y, Orre LM, Johansson HJ, ..., Branca RMM, Lehtiö J

EBI: PXD006291 EBI: E-MTAB-5285 EBI: E-MTAB-2836

Nat Commun 9 (1) - [2018-12-00; online 2018-03-02]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Proteogenomics [Technology development]

PubMed DOI Crossref

EMBLmyGFF3: a converter facilitating genome annotation submission to European Nucleotide Archive

Norling M, Jareborg N, Dainat J

BMC Res Notes 11 (1) - [2018-12-00; online 2018-08-13]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Somatic mutagenesis in satellite cells associates with human skeletal muscle aging

Franco I, Johansson A, Olsson K, ..., Fischer H, Eriksson M

Nat Commun 9 (1) - [2018-12-00; online 2018-02-23]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

RNA-sequencing reveals long-term effects of silver nanoparticles on human lung cells

Gliga AR, Di Bucchianico S, Lindvall J, Fadeel B, Karlsson HL

ArrayExpress: E-MTAB-6321 ArrayExpress: E-MTAB-6331

Sci Rep 8 (1) - [2018-12-00; online 2018-04-27]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing

Bartoschek M, Oskolkov N, Bocci M, ..., Björklund Å, Pietras K

Nat Commun 9 (1) - [2018-12-00; online 2018-12-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome

Sork H, Corso G, Krjutskov K, ..., Mäger I, EL Andaloussi S

BioProject: PRJNA408072 SRA: SRP118970

Sci Rep 8 (1) - [2018-12-00; online 2018-07-17]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Proteogenomics [Collaborative]

PubMed DOI Crossref

A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons

Södersten E, Toskas K, Rraklli V, ..., Perlmann T, Holmberg J

GEO: GSE107656

Nat Commun 9 (1) - [2018-12-00; online 2018-03-26]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Modelling of zero-inflation improves inference of metagenomic gene count data

Jonsson V, Österlund T, Nerman O, Kristiansson E

Stat Methods Med Res - (-) 096228021881135 [2018-11-25; online 2018-11-25]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere

Lopez-Fernandez M, Simone D, Wu X, ..., Bertilsson S, Dopson M

MBio 9 (6) - [2018-11-20; online 2018-11-20]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Protein profiling of fine-needle aspirates reveals subtype-associated immune signatures and involvement of chemokines in breast cancer.

Franzén B, Alexeyenko A, Kamali-Moghaddam M, ..., Landegren U, Lewensohn R

Mol Oncol 13 (2) 376-391 [2018-11-19; online 2018-11-19]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Biomarkers [Service] PLA and Single Cell Proteomics [Technology development]

PubMed DOI Crossref

Expression profiling and in situ screening of circular RNAs in human tissues.

Zaghlool A, Ameur A, Wu C, ..., Nilsson M, Feuk L

pii: 10.1038/s41598-018-35001-6

Sci Rep 8 (1) 16953 [2018-11-16; online 2018-11-16]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] In Situ Sequencing (ISS) [Technology development] NGI Uppsala (Uppsala Genome Center) [Technology development] National Genomics Infrastructure [Technology development]

PubMed DOI Crossref

Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies

Akhter S, Kretzschmar WW, Nordal V, ..., Emanuelsson O, Sundström JF

Front Plant Sci 9 (-) - [2018-11-13; online 2018-11-13]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis

Falcão AM, van Bruggen D, Marques S, ..., Guerreiro-Cacais AO, Castelo-Branco G

GEO: GSE113973

Nat Med - (-) - [2018-11-12; online 2018-11-12]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Lin YC, Wang J, Delhomme N, ..., Ingvarsson PK, Street NR

European Nucleotide Archive: PRJEB23585 PlantGenie.org: pnas201801437

Proc Natl Acad Sci USA - (-) 201801437 [2018-10-29; online 2018-10-29]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays

Giacomello S, Lundeberg J

Nat Protoc - (-) - [2018-10-23; online 2018-10-23]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Wang H, Marcišauskas S, Sánchez BJ, ..., Nielsen J, Kerkhoven EJ

PLoS Comput. Biol. 14 (10) e1006541 [2018-10-18; online 2018-10-18]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Transcriptomic and genomic profiling of early-stage ovarian carcinomas associated with histotype and overall survival.

Engqvist H, Parris TZ, Rönnerman EW, ..., Karlsson P, Helou K

pii: 26225 pmc: PMC6205557

Oncotarget 9 (80) 35162-35180 [2018-10-12; online 2018-10-12]

Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Service]

PubMed DOI Crossref

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data

Ameur A, Che H, Martin M, ..., Feuk L, Gyllensten U

Genes 9 (10) 486 [2018-10-09; online 2018-10-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

NormalyzerDE: Online tool for improved normalization of omics expression data and high-sensitivity differential expression analysis.

Willforss J, Chawade A, Levander F

J. Proteome Res. - (-) - [2018-10-02; online 2018-10-02]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia

Gunnarsson R, Dilorenzo S, Lundin-Ström KB, ..., Isaksson A, Johansson B

EGA: EGAS00001001795

Leukemia 32 (10) 2117-2125 [2018-10-00; online 2018-03-12]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Methanogens and Iron-Reducing Bacteria: the Overlooked Members of Mercury-Methylating Microbial Communities in Boreal Lakes

Bravo AG, Peura S, Buck M, ..., Björn E, Bertilsson S

Appl Environ Microbiol 84 (23) - [2018-09-21; online 2018-11-15]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.

Vetukuri RR, Tripathy S, Malar C M, ..., Grenville-Briggs LJ, Whisson SC

pii: 5061551 pmc: PMC6152947

Genome Biol Evol 10 (9) 2432-2442 [2018-09-01; online 2018-09-01]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Autosomal Recessive Osteogenesis Imperfecta Caused by a Novel Homozygous COL1A2 Mutation

Costantini A, Tournis S, Kämpe A, ..., Doulgeraki A, Mäkitie O

Calcif Tissue Int 103 (3) 353-358 [2018-09-00; online 2018-03-23]

Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A fine-needle aspiration-based protein signature discriminates benign from malignant breast lesions

Franzén B, Kamali-Moghaddam M, Alexeyenko A, ..., Landegren U, Lewensohn R

Mol Oncol 12 (9) 1415-1428 [2018-09-00; online 2018-08-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Biomarkers [Service] PLA and Single Cell Proteomics [Technology development]

PubMed DOI Crossref

Sequentially acting SOX proteins orchestrate astrocyte‐ and oligodendrocyte‐specific gene expression

Klum S, Zaouter C, Alekseenko Z, ..., Muhr J, Bergsland M

EMBO Rep. - (-) e46635 [2018-08-30; online 2018-08-30]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Exploratory Profiling of Urine MicroRNAs in the dy Mouse Model of LAMA2-CMD: Relation to Disease Progression.2J/dy2J

Moreira Soares Oliveira B, Gawlik KI, Durbeej M, Holmberg J

pmc: PMC6140833

PLoS Curr 10 (-) - [2018-08-27; online 2018-08-27]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Life history of Parnips and the evolutionary origin of gall wasps

Ronquist F, Nylander JAA, Vårdal H, Nieves-Aldrey JL

JHR 65 (-) 91-110 [2018-08-27; online 2018-08-27]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Global characterization of the Dicer-like protein DrnB roles in miRNA biogenesis in the social amoeba Dictyostelium discoideum.

Liao Z, Kjellin J, Hoeppner MP, Grabherr M, Söderbom F

pmc: PMC6161686

RNA Biol 15 (7) 937-954 [2018-08-21; online 2018-08-21]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development.

Marques S, van Bruggen D, Vanichkina DP, ..., Taft RJ, Castelo-Branco G

pii: S1534-5807(18)30558-6 pmc: PMC6104814 GEO: GSE95194 GEO: GSE95093

Dev. Cell 46 (4) 504-517.e7 [2018-08-20; online 2018-08-02]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Collaborative]

PubMed DOI Crossref

Novel Autotrophic Organisms Contribute Significantly to the Internal Carbon Cycling Potential of a Boreal Lake

Peura S, Buck M, Aalto SL, ..., Nykänen H, Eiler A

SRA: SRP076290

MBio 9 (4) - [2018-08-14; online 2018-08-14]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Reduction in White Blood Cell, Neutrophil and Red Blood Cell counts Related to Gender, HLA and Islet Autoantibodies in Swedish TEDDY Children at Increased Risk for Type 1 Diabetes

Salami F, Lee HS, Freyhult E, ..., Lernmark Å, Törn C

Diabetes - (-) db180355 [2018-08-13; online 2018-08-13]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR-Cas9-based approach

von der Heyde B, Emmanouilidou A, Klingström T, ..., Brooke HL, den Hoed M

- - (-) - [2018-08-09; online 2018-08-09]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems.

Hu YOO, Ndegwa N, Alneberg J, ..., Fagerberg J, Andersson AF

pii: 10.1038/s41598-018-29920-7 pmc: PMC6085348 European Nucleotide Archive: PRJEB20562

Sci Rep 8 (1) 11907 [2018-08-09; online 2018-08-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Biermann J, Parris TZ, Nemes S, ..., Karlsson P, Helou K

pii: 10.1186/s13058-018-1022-y GEO: GSE97293 GEO: GSE97177

Breast Cancer Res. 20 (1) 96 [2018-08-09; online 2018-08-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive RNA sequencing analysis in serum and muscle reveals novel small RNA signatures with biomarker potential for Duchenne Muscular Dystrophy

Coenen-Stass AML, Sork H, Gatto S, ..., Wood MJA, Roberts TC

SRA: SRP102619

Mol Ther Nucleic Acids - (-) - [2018-08-00; online 2018-08-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Delineating closely related dinoflagellate lineages using phylotranscriptomics.

Annenkova NV, Ahrén D, Logares R, Kremp A, Rengefors K

J. Phycol. 54 (4) 571-576 [2018-08-00; online 2018-06-13]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Plasma Protein Profiling Reveal Osteoprotegerin as a Marker of Prognostic Impact for Colorectal Cancer

Birgisson H, Tsimogiannis K, Freyhult E, Kamali-Moghaddam M

Transl Oncol 11 (4) 1034-1043 [2018-08-00; online 2018-08-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Biomarkers [Service] PLA and Single Cell Proteomics [Service]

PubMed DOI Crossref

Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans

Cedernaes J, Schönke M, Westholm JO, ..., Zierath JR, Benedict C

Sci Adv 4 (8) eaar8590 [2018-08-00; online 2018-08-22]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments

Andermann T, Cano Á, Zizka A, Bacon C, Antonelli A

SRA: SRP131660 Zenodo: 10.5281/zenodo.1162653

PeerJ 6 (-) e5175 [2018-07-13; online 2018-07-13]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.

Jeggari A, Alekseenko Z, Petrov I, ..., Ericson J, Alexeyenko A

pii: 5035166 pmc: PMC6030852 GEO: GSE112698

Nucleic Acids Res. 46 (W1) W163-W170 [2018-07-02; online 2018-06-13]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Bioconda: sustainable and comprehensive software distribution for the life sciences

Grüning B, Dale R, Sjödin A, ..., Valieris R, Köster J

Nat Methods 15 (7) 475-476 [2018-07-00; online 2018-07-02]

Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria.

Garcia SL, Buck M, Hamilton JJ, ..., McMahon KD, Eiler A

pii: 3/3/e00202-18 pmc: PMC5976882

mSphere 3 (3) - [2018-06-27; online 2018-05-30]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Topology of membrane proteins — predictions, limitations and variations

Tsirigos KD, Govindarajan S, Bassot C, ..., Shu N, Elofsson A

Current Opinion in Structural Biology 50 (-) 9-17 [2018-06-00; online 2018-06-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Testis transcriptome alterations in zebrafish (Danio rerio) with reduced fertility due to developmental exposure to 17α-ethinyl estradiol

Porseryd T, Reyhanian Caspillo N, Volkova K, ..., Olsson PE, Porsch-Hällström I

General and Comparative Endocrinology 262 (-) 44-58 [2018-06-00; online 2018-06-00]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

SWI/SNF regulates half of its targets without the need of ATP-driven nucleosome remodeling by Brahma.

Jordán-Pla A, Yu S, Waldholm J, ..., Östlund Farrants AK, Visa N

pii: 10.1186/s12864-018-4746-2 pmc: PMC5960078 GEO: GSE95236

BMC Genomics 19 (1) 367 [2018-05-18; online 2018-05-18]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Transcriptomic analysis of the harvested endothelial cells in a swine model of mechanical thrombectomy.

Jaff N, Grankvist R, Muhl L, ..., Eriksson U, Holmin S

pii: 10.1007/s00234-018-2033-1 pmc: PMC5995995

Neuroradiology - (-) - [2018-05-14; online 2018-05-14]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Modulation of gene transcription and epigenetics of colon carcinoma cells by bacterial membrane vesicles.

Vdovikova S, Gilfillan S, Wang S, ..., Wai SN, Hurtado A

pii: 10.1038/s41598-018-25308-9 pmc: PMC5943334

Sci Rep 8 (1) 7434 [2018-05-09; online 2018-05-09]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Array profiling reveals contribution of Cthrc1 to growth of the denervated rat urinary bladder.

Zhu B, Ekman M, Svensson D, ..., Uvelius B, Swärd K

Am. J. Physiol. Renal Physiol. 314 (5) F893-F905 [2018-05-01; online 2018-01-10]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

O6-methylguanine–induced transcriptional mutagenesis reduces p53 tumor-suppressor function

Ezerskyte M, Paredes JA, Malvezzi S, ..., Scicchitano DA, Dreij K

pii: 1721764115

Proc. Natl. Acad. Sci. U.S.A. 115 (18) 4731-4736 [2018-05-01; online 2018-04-17]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Mitochondrial Translation Efficiency Controls Cytoplasmic Protein Homeostasis

Suhm T, Kaimal JM, Dawitz H, ..., Andréasson C, Ott M

Cell Metabolism - (-) - [2018-05-00; online 2018-05-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Expression of scavenger receptor MARCO defines a targetable tumor-associated macrophage subset in non-small cell lung cancer.

La Fleur L, Boura VF, Alexeyenko A, ..., Karlsson MCI, Botling J

Int. J. Cancer - (-) - [2018-04-18; online 2018-04-18]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics Uppsala [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Evaluation of the ISL1 gene in the pathogenesis of bladder exstrophy in a Swedish cohort.

Arkani S, Cao J, Lundin J, ..., Matsson H, Nordenskjöld A

pmc: PMC5874392 ArrayExpress: E-MTAB-5143

Hum Genome Var 5 (-) 18009 [2018-03-29; online 2018-03-29]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome

Ramqvist T, Näsman A, Franzén B, ..., Dalianis T, Munck-Wikland E

Int J Mol Sci 19 (4) 978 [2018-03-25; online 2018-03-25]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Biomarkers [Service]

PubMed DOI Crossref

Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases

Bravo AG, Zopfi J, Buck M, ..., Poté J, Cosio C

BioProject: PRJEB20838

ISME J 12 (3) 802-812 [2018-03-00; online 2018-01-10]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Nubbin isoform antagonism governs Drosophila intestinal immune homeostasis.

Lindberg BG, Tang X, Dantoft W, ..., Lindvall JM, Engström Y

pii: PPATHOGENS-D-17-02350 pmc: PMC5851638

PLoS Pathog. 14 (3) e1006936 [2018-03-00; online 2018-03-02]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Ten steps to get started in Genome Assembly and Annotation

Dominguez Del Angel V, Hjerde E, Sterck L, ..., Binzer-Panchal M, Lantz H

F1000Res 7 (-) 148 [2018-02-05; online 2018-02-05]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Formation of mercury methylation hotspots as a consequence of forestry operations

Eklöf K, Bishop K, Bertilsson S, ..., Kronberg RM, Bravo AG

Science of The Total Environment 613-614 (-) 1069-1078 [2018-02-00; online 2018-02-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Bacterial secretion of D-arginine controls environmental microbial biodiversity.

Alvarez L, Aliashkevich A, de Pedro MA, Cava F

pii: ismej2017176 pmc: PMC5776457

ISME J 12 (2) 438-450 [2018-02-00; online 2017-10-13]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

The discovery of the virulence gene ToxA in the wheat and barley pathogen Bipolaris sorokiniana.

McDonald MC, Ahren D, Simpfendorfer S, Milgate A, Solomon PS

Mol. Plant Pathol. 19 (2) 432-439 [2018-02-00; online 2017-03-12]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation.

Leal L, Talla V, Källman T, ..., Vila R, Backström N

BioProject: PRJEB24745 ArrayExpress: E‐MTAB‐6454

Mol. Ecol. 27 (4) 935-948 [2018-02-00; online 2018-02-26]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

Ahmed E, Parducci L, Unneberg P, ..., Slotte T, Wohlfarth B

Quaternary Science Reviews 181 (-) 19-29 [2018-02-00; online 2018-02-00]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Pulmonary fibrosis in vivo displays increased p21 expression reduced by 5-HT2B receptor antagonists in vitro - a potential pathway affecting proliferation.

Löfdahl A, Rydell-Törmänen K, Larsson-Callerfelt A, Wenglén C, Westergren-Thorsson G

pii: 10.1038/s41598-018-20430-0 pmc: PMC5792547

Sci Rep 8 (1) 1927 [2018-01-31; online 2018-01-31]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A Single Bout of Electroacupuncture Remodels Epigenetic and Transcriptional Changes in Adipose Tissue in Polycystic Ovary Syndrome.

Kokosar M, Benrick A, Perfilyev A, ..., Ling C, Stener-Victorin E

pii: 10.1038/s41598-017-17919-5 pmc: PMC5790004

Sci Rep 8 (1) 1878 [2018-01-30; online 2018-01-30]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A protein interaction network centered on leucine-rich repeats and immunoglobulin-like domains 1 (LRIG1) regulates growth factor receptors

Faraz M, Herdenberg C, Holmlund C, Henriksson R, Hedman H

J. Biol. Chem. - (-) jbc.M117.807487 [2018-01-09; online 2018-01-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

MicroRNA expression profiles in non‑epithelial ovarian tumors.

Chang RK, Li X, Mu N, ..., Larsson C, Lui WO

pmc: PMC5743337

Int. J. Oncol. 52 (1) 55-66 [2018-01-00; online 2017-11-10]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction.

Salvatore M, Shu N, Elofsson A

pmc: PMC5734273

Protein Sci. 27 (1) 195-201 [2018-01-00; online 2017-10-24]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Phylogeny, species delimitation and revision of Pleioluma (Sapotaceae) in New Caledonia, a frequently gynodioecious genus

Swenson U, Nylander JAA, Munzinger J

Aust. Systematic Bot. 31 (2) 120 [2018-00-00; online 2018-00-00]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Metabolome dynamics of diapause in the butterfly Pieris napi: distinguishing maintenance, termination and post-diapause phases

Lehmann P, Pruisscher P, Koštál V, ..., Wheat CW, Gotthard K

Journal of Experimental Biology - (-) - [2017-12-01; online 2017-11-27]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration

Elewa A, Wang H, Talavera-López C, ..., Andersson B, Simon A

SRA: SRP116714 BioProject: PRJNA353981

Nat Commun 8 (1) - [2017-12-00; online 2017-12-22]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Dog ownership and the risk of cardiovascular disease and death – a nationwide cohort study

Mubanga M, Byberg L, Nowak C, ..., Ingelsson E, Fall T

Sci Rep 7 (1) - [2017-12-00; online 2017-11-17]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Mutational and putative neoantigen load predict clinical benefit of adoptive T cell therapy in melanoma

Lauss M, Donia M, Harbst K, ..., Svane IM, Jönsson G

Nat Commun 8 (1) - [2017-12-00; online 2017-11-23]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea

Hüttner S, Nguyen TT, Granchi Z, ..., Thanh VN, Olsson L

Biotechnol Biofuels 10 (1) - [2017-12-00; online 2017-11-13]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study

Berghoff BA, Karlsson T, Källman T, Wagner EGH, Grabherr MG

BioData Mining 10 (1) - [2017-12-00; online 2017-09-05]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Rho-kinase inhibitor Y-27632 and hypoxia synergistically enhance chondrocytic phenotype and modify S100 protein profiles in human chondrosarcoma cells

Piltti J, Bygdell J, Fernández-Echevarría C, Marcellino D, Lammi MJ

Sci Rep 7 (1) - [2017-12-00; online 2017-06-16]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition

Amlinger L, Hoekzema M, Wagner EGH, Koskiniemi S, Lundgren M

Sci Rep 7 (1) - [2017-12-00; online 2017-09-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Mitogenome evolution in the last surviving woolly mammoth population reveals neutral and functional consequences of small population size

Pečnerová P, Palkopoulou E, Wheat CW, ..., Díez-del-Molino D, Dalén L

Evolution Letters - (-) - [2017-11-28; online 2017-11-28]

Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Genome-Based Sexing Provides Clues about Behavior and Social Structure in the Woolly Mammoth.

Pečnerová P, Díez-Del-Molino D, Dussex N, ..., Vartanyan S, Dalén L

pii: S0960-9822(17)31264-2 BioProject: PRJEB22575

Curr. Biol. 27 (22) 3505-3510.e3 [2017-11-20; online 2017-11-02]

Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Antibody Heavy Chain Variable Domains of Different Germline Gene Origins Diversify through Different Paths

Kirik U, Persson H, Levander F, Greiff L, Ohlin M

Front Immunol 8 (-) - [2017-11-13; online 2017-11-13]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Drug Discovery and Development (DDD) [Collaborative]

PubMed DOI Crossref

RNA-Seq de novo assembly and differential transcriptome analysis of the nematode Ascaridia galli in relation to in vivo exposure to flubendazole

Martis MM, Tarbiat B, Tydén E, Jansson DS, Höglund J

BioProject: PRJEB20558

PLoS ONE 12 (11) e0185182 [2017-11-03; online 2017-11-03]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Proteomic Analysis of Phytophthora infestans Reveals the Importance of Cell Wall Proteins in Pathogenicity

Resjö S, Brus M, Ali A, ..., Grenville-Briggs L, Andreasson E

Mol Cell Proteomics 16 (11) 1958-1971 [2017-11-00; online 2017-09-21]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population.

Ameur A, Dahlberg J, Olason P, ..., Magnusson PK, Gyllensten U

pii: ejhg2017130 swefreq: swegen

Eur. J. Hum. Genet. 25 (11) 1253-1260 [2017-11-00; online 2017-08-23]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions

Hubalek V, Buck M, Tan B, ..., Bertilsson S, Eiler A

mSystems 2 (5) e00038-17 [2017-10-31; online 2017-10-31]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Effects of long-term low oxygen tension in human chondrosarcoma cells

Piltti J, Bygdell J, Qu C, Lammi MJ

J. Cell. Biochem. - (-) - [2017-10-18; online 2017-10-18]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The Evolution of Dark Matter in the Mitogenome of Seed Beetles

Sayadi A, Immonen E, Tellgren-Roth C, Arnqvist G

GENBANK: KY856743 GENBANK: KY856744 GENBANK: KY856745 GENBANK: KY942060 GENBANK: KY942061 GENBANK: KY942062 GENBANK: MF925724

Genome Biol Evol 9 (10) 2697-2706 [2017-10-01; online 2017-09-27]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The cagE gene sequence as a diagnostic marker to identify JP2 and non-JP2 highly leukotoxic Aggregatibacter actinomycetemcomitans serotype b strains.

Johansson A, Claesson R, Höglund Åberg C, Haubek D, Oscarsson J

GENBANK: LT601546 GENBANK: LT601547 GENBANK: LT601548 GENBANK: AAM68959 GENBANK: AHN72937

J. Periodont. Res. 52 (5) 903-912 [2017-10-00; online 2017-04-10]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Alterations of c-di-GMP turnover proteins modulate semi-constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli.

Cimdins A, Simm R, Li F, ..., Brauner A, Römling U

pmc: PMC5635171

Microbiologyopen 6 (5) - [2017-10-00; online 2017-09-15]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Antibody Affinity Against 2009 A/H1N1 Influenza and Pandemrix Vaccine Nucleoproteins Differs Between Childhood Narcolepsy Patients and Controls.

Lind A, Freyhult E, Ramelius A, ..., Elding Larsson H, Lernmark Å

Viral Immunol. 30 (8) 590-600 [2017-10-00; online 2017-08-10]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Anti-mycobacterial activity correlates with altered DNA methylation pattern in immune cells from BCG-vaccinated subjects.

Verma D, Parasa VR, Raffetseder J, ..., Netea M, Lerm M

pii: 10.1038/s41598-017-12110-2 pmc: PMC5615063

Sci Rep 7 (1) 12305 [2017-09-26; online 2017-09-26]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genetic risk scores and family history as predictors of schizophrenia in Nordic registers.

Lu Y, Pouget JG, Andreassen OA, ..., Werge T, Sullivan PF

pii: S0033291717002665

Psychol Med - (-) 1-9 [2017-09-25; online 2017-09-25]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The regulation of hydroxysteroid 17β-dehydrogenase type 1 and 2 gene expression in breast cancer cell lines by estradiol, dihydrotestosterone, microRNAs, and genes related to breast cancer.

Hilborn E, Stål O, Alexeyenko A, Jansson A

pii: 19136 pmc: PMC5617496

Oncotarget 8 (37) 62183-62194 [2017-09-22; online 2017-07-10]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Copper chaperone ATOX1 regulates pluripotency factor OCT4 in preimplantation mouse embryos.

Celauro E, Mukaj A, Fierro-González JC, Wittung-Stafshede P

pii: S0006-291X(17)31406-7

Biochem. Biophys. Res. Commun. 491 (1) 147-153 [2017-09-09; online 2017-07-12]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog

Montero-Mendieta S, Grabherr M, Lantz H, ..., Webster MT, Vilà C

SRA: SRP106442 GENBANK: GFNJ00000000 BioProject: PRJNA384528

PeerJ 5 (-) e3702 [2017-09-01; online 2017-09-01]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The Huperzia selago Shoot Tip Transcriptome Sheds New Light on the Evolution of Leaves.

Evkaikina AI, Berke L, Romanova MA, ..., Pawlowski K, Voitsekhovskaja OV

pii: 4097580 pmc: PMC5622374 BioProject: PRJNA281995

Genome Biol Evol 9 (9) 2444-2460 [2017-09-01; online 2017-09-29]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Genome scale metabolic modeling of cancer

Nilsson A, Nielsen J

Metabolic Engineering 43 (-) 103-112 [2017-09-00; online 2017-09-00]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Cerium oxide nanoparticles inhibit differentiation of neural stem cells.

Gliga AR, Edoff K, Caputo F, ..., Ceccatelli S, Fadeel B

pii: 10.1038/s41598-017-09430-8 pmc: PMC5570910 ArrayExpress: E-MTAB-4398

Sci Rep 7 (1) 9284 [2017-08-24; online 2017-08-24]

Advanced Light Microscopy (ALM) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

SubCons: a new ensemble method for improved human subcellular localization predictions.

Salvatore M, Warholm P, Shu N, Basile W, Elofsson A

pii: 3603546

Bioinformatics 33 (16) 2464-2470 [2017-08-15; online 2017-04-14]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Targeted sequencing of tonsillar and base of tongue cancer and human papillomavirus positive unknown primary of the head and neck reveals prognostic effects of mutated FGFR3

Bersani C, Sivars L, Haeggblom L, ..., Ramqvist T, Dalianis T

Oncotarget - (-) - [2017-07-18; online 2017-02-09]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Analysis of aquaporins from the euryhaline barnacle Balanus improvisus reveals differential expression in response to changes in salinity.

Lind U, Järvå M, Alm Rosenblad M, ..., Hedfalk K, Blomberg A

pii: PONE-D-17-05123 pmc: PMC5513457 GENBANK: KY508284 GENBANK: KY508285 GENBANK: KY508286 GENBANK: KY508287 GENBANK: KY508289 GENBANK: KY508290 GENBANK: KY508291 GENBANK: KY508292 GENBANK: KY508288 GENBANK: KY508293 GENBANK: KY508294 GENBANK: KY508295 GENBANK: KY508296 GENBANK: KY508297 GENBANK: KY508298

PLoS ONE 12 (7) e0181192 [2017-07-17; online 2017-07-17]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Identifying Bird Remains Using Ancient DNA Barcoding

Dalén L, Lagerholm V, Nylander J, ..., Irestedt M, Stewart J

Genes 8 (6) 169 [2017-06-21; online 2017-06-21]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Systems Biology of Metabolism

Nielsen J

Annu. Rev. Biochem. 86 (1) 245-275 [2017-06-20; online 2017-06-20]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Protein expression in tension wood formation monitored at high tissue resolution in Populus

Bygdell J, Srivastava V, Obudulu O, ..., Mellerowicz EJ, Wingsle G

- 68 (13) 3405-3417 [2017-06-15; online 2017-06-13]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Four simple recommendations to encourage best practices in research software

Jiménez RC, Kuzak M, Alhamdoosh M, ..., Watson-Haigh NS, Crouch S

F1000Res 6 (-) 876 [2017-06-13; online 2017-06-13]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

A community proposal to integrate proteomics activities in ELIXIR

Vizcaíno JA, Walzer M, Jiménez RC, ..., Martens L, Kohlbacher O

F1000Res 6 (-) 875 [2017-06-13; online 2017-06-13]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica).

Grenville-Briggs LJ, Kushwaha SK, Cleary MR, ..., Chawade A, Vetukuri RR

pii: S2213-5960(17)30097-1 pmc: PMC5435576

Genom Data 12 (-) 155-156 [2017-06-00; online 2017-05-12]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The transcriptome of the avian malaria parasite Plasmodium ashfordi displays host-specific gene expression.

Videvall E, Cornwallis CK, Ahrén D, ..., Valkiūnas G, Hellgren O

Mol. Ecol. 26 (11) 2939-2958 [2017-06-00; online 2017-04-08]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Lower inflammatory markers in women with antenatal depression brings the M1/M2 balance into focus from a new direction

Edvinsson Å, Bränn E, Hellgren C, ..., Cunningham JL, Sundström-Poromaa I

Psychoneuroendocrinology 80 (-) 15-25 [2017-06-00; online 2017-06-00]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Biomarkers [Service] PLA and Single Cell Proteomics [Collaborative]

PubMed DOI Crossref

Draft Genome Sequence of the Mycoparasitic Oomycete Pythium oligandrum Strain CBS 530.74.

Kushwaha SK, Vetukuri RR, Grenville-Briggs LJ

pii: 5/21/e00346-17 pmc: PMC5477391

Genome Announc 5 (21) - [2017-05-25; online 2017-05-25]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast.

Lahtvee P, Sánchez BJ, Smialowska A, ..., Gatto F, Nielsen J

pii: S2405-4712(17)30088-1

Cell Syst 4 (5) 495-504.e5 [2017-05-24; online 2017-03-29]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

ProQ3D: improved model quality assessments using deep learning.

Uziela K, Menéndez Hurtado D, Shu N, Wallner B, Elofsson A

pii: btw819

Bioinformatics 33 (10) 1578-1580 [2017-05-15; online 2017-01-06]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Whole blood gene expression in adolescent chronic fatigue syndrome: an exploratory cross-sectional study suggesting altered B cell differentiation and survival.

Nguyen CB, Alsøe L, Lindvall JM, ..., Nilsen H, Wyller VB

pii: 10.1186/s12967-017-1201-0 pmc: PMC5426002 ClinicalTrials.gov: NCT01040429 ClinicalTrials.gov: NCT01040429

J Transl Med 15 (1) 102 [2017-05-11; online 2017-05-11]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data.

Eisfeldt J, Vezzi F, Olason P, Nilsson D, Lindstrand A

pmc: PMC5521161

F1000Res 6 (-) 664 [2017-05-10; online 2017-05-10]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Stockholm [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Spatially resolved transcriptome profiling in model plant species.

Giacomello S, Salmén F, Terebieniec BK, ..., Street NR, Lundeberg J

pii: nplants201761

NPLANTS 3 (-) 17061 [2017-05-08; online 2017-05-08]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women.

Engström K, Wojdacz TK, Marabita F, ..., Vahter M, Broberg K

pii: 10.1007/s00204-016-1879-4 pmc: PMC5399044

Arch. Toxicol. 91 (5) 2067-2078 [2017-05-00; online 2016-11-12]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes.

Rineau F, Lmalem H, Ahren D, ..., Martin F, Colpaert JV

pii: 10.1007/s00572-016-0758-4

Mycorrhiza 27 (4) 383-396 [2017-05-00; online 2017-01-09]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Comprehensive mapping of the effects of azacitidine on DNA methylation, repressive/permissive histone marks and gene expression in primary cells from patients with MDS and MDS-related disease.

Tobiasson M, Abdulkadir H, Lennartsson A, ..., Hellström-Lindberg E, Ungerstedt J

pii: 15807 pmc: PMC5438694

Oncotarget 8 (17) 28812-28825 [2017-04-25; online 2017-04-22]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Persistent Effects of Developmental Exposure to 17α-Ethinylestradiol on the Zebrafish (Danio rerio) Brain Transcriptome and Behavior

Porseryd T, Volkova K, Reyhanian Caspillo N, ..., Dinnetz P, Porsh Hällström I

Front. Behav. Neurosci. 11 (-) - [2017-04-20; online 2017-04-20]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana

Reimegård J, Kundu S, Pendle A, ..., Sundström JF, Emanuelsson O

Nucleic Acids Res 45 (6) 3253-3265 [2017-04-07; online 2017-02-08]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Complete Genome Sequences of the Xylose-Fermenting Candida intermedia Strains CBS 141442 and PYCC 4715

Moreno AD, Tellgren-Roth C, Soler L, ..., Olsson L, Geijer C

Genome Announc 5 (14) e00138-17 [2017-04-06; online 2017-04-06]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species.

Nielsen JC, Grijseels S, Prigent S, ..., Workman M, Nielsen J

pii: nmicrobiol201744

Nat Microbiol 2 (-) 17044 [2017-04-03; online 2017-04-03]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Green listed—a CRISPR screen tool

Panda SK, Boddul SV, Jiménez-Andrade GY, ..., Fernandez-Ricaud L, Wermeling F

Bioinformatics 33 (7) 1099-1100 [2017-04-01; online 2016-12-19]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Induction of Apoptosis in Intestinal Toxicity to a Histone Deacetylase Inhibitor in a Phase I Study with Pelvic Radiotherapy.

Kalanxhi E, Risberg K, Barua IS, ..., Flatmark K, Ree AH

pii: crt.2016.080

Cancer Res Treat 49 (2) 374-386 [2017-04-00; online 2016-08-05]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Frequent low-level mutations of protein kinase D2 in angiolipoma

Hofvander J, Arbajian E, Stenkula KG, ..., Hornick JL, Mertens F

J. Pathol 241 (5) 578-582 [2017-04-00; online 2017-02-27]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Genomic structure of the horse major histocompatibility complex class II region resolved using PacBio long-read sequencing technology

Viļuma A, Mikko S, Hahn D, ..., Andersson G, Bergström TF

Sci Rep 7 (-) 45518 [2017-03-31; online 2017-03-31]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Draft Genome Sequence of the Mycoparasitic Oomycete Pythium periplocum Strain CBS 532.74.

Kushwaha SK, Vetukuri RR, Grenville-Briggs LJ

pii: 5/12/e00057-17 pmc: PMC5364223

Genome Announc 5 (12) - [2017-03-23; online 2017-03-23]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis.

Jeggari A, Alexeyenko A

pii: 10.1186/s12859-017-1534-y pmc: PMC5374688

BMC Bioinformatics 18 (Suppl 5) 118 [2017-03-23; online 2017-03-23]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis.

Zhu Y, Engström PG, Tellgren-Roth C, ..., Scheynius A, Lehtiö J

pii: gkx006 pmc: PMC5389616 ENA: PRJEB13283 ArrayExpress: E-MTAB-4589 PRIDE: PXD003773

Nucleic Acids Res. 45 (5) 2629-2643 [2017-03-17; online 2017-01-20]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Proteomics Mass spectrometry [Technology development] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative] Proteogenomics [Technology development]

PubMed DOI Crossref

Towards a whole-genome sequence for rye (Secale cereale L.).

Bauer E, Schmutzer T, Barilar I, ..., Schön CC, Scholz U

GENBANK: ERS455621 GENBANK: ERS455631 GENBANK: ERS1115868

Plant J. 89 (5) 853-869 [2017-03-00; online 2016-11-27]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE.

Levin M, Levander F, Palmason R, Greiff L, Ohlin M

pii: S0091-6749(16)30779-5

J. Allergy Clin. Immunol. 139 (3) 1026-1030 [2017-03-00; online 2016-08-09]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Tracing Cellular Origin of Human Exosomes Using Multiplex Proximity Extension Assays

Larssen P, Wik L, Czarnewski P, ..., Gabrielsson S, Kamali-Moghaddam M

Mol Cell Proteomics 16 (3) 502-511 [2017-03-00; online 2017-01-22]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] PLA and Single Cell Proteomics [Technology development]

PubMed DOI Crossref

High GC content causes orphan proteins to be intrinsically disordered.

Basile W, Sachenkova O, Light S, Elofsson A

pii: PCOMPBIOL-D-16-01242 pmc: PMC5389847

PLoS Comput. Biol. 13 (3) e1005375 [2017-03-00; online 2017-03-29]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Defining the human copper proteome and analysis of its expression variation in cancers.

Blockhuys S, Celauro E, Hildesjö C, ..., Fierro-González JC, Wittung-Stafshede P

Metallomics 9 (2) 112-123 [2017-02-22; online 2016-12-13]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

RhoA knockout fibroblasts lose tumor-inhibitory capacity in vitro and promote tumor growth in vivo.

Alkasalias T, Alexeyenko A, Hennig K, ..., Gad AK, Pavlova T

pii: 1621161114 pmc: PMC5338371

Proc. Natl. Acad. Sci. U.S.A. 114 (8) E1413-E1421 [2017-02-21; online 2017-02-07]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Cell Profiling [Collaborative]

PubMed DOI Crossref

The mitochondrial genome sequences of the round goby and the sand goby reveal patterns of recent evolution in gobiid fish.

Adrian-Kalchhauser I, Svensson O, Kutschera VE, ..., Blomberg A, Burkhardt-Holm P

pii: 10.1186/s12864-017-3550-8 pmc: PMC5314710

BMC Genomics 18 (1) 177 [2017-02-16; online 2017-02-16]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling network.

Zhou Y, Frings O, Branca RM, ..., Agami R, Orre LM

pii: onc2016242 pmc: PMC5311252

Oncogene 36 (6) 731-745 [2017-02-09; online 2016-08-01]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Massive parallel sequencing questions the pathogenic role of missense variants in dilated cardiomyopathy.

Dalin MG, Engström PG, Ivarsson EG, ..., Andersson B, Bergo MO

pii: S0167-5273(16)33512-4

Int. J. Cardiol. 228 (-) 742-748 [2017-02-01; online 2016-11-26]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The in silico identification and characterization of a bread wheat/Triticum militinae introgression line.

Abrouk M, Balcárková B, Šimková H, ..., Doležel J, Valárik M

pmc: PMC5259550

Plant Biotechnol. J. 15 (2) 249-256 [2017-02-00; online 2016-08-12]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Genomic analysis reveals major determinants ofcis-regulatory variation inCapsella grandiflora

Steige KA, Laenen B, Reimegård J, Scofield DG, Slotte T

BioProject: PRJEB12070 BioProject: PRJEB12072

Proc Natl Acad Sci USA 114 (5) 1087-1092 [2017-01-31; online 2017-01-17]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Draft Genome Sequences of Semiconstitutive Red, Dry, and Rough Biofilm-Forming Commensal and Uropathogenic Escherichia coli Isolates.

Cimdins A, Lüthje P, Li F, ..., Brauner A, Römling U

pii: 5/4/e01249-16 pmc: PMC5270688

Genome Announc 5 (4) - [2017-01-26; online 2017-01-26]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Early onset of inflammation during ontogeny of bipolar disorder: the NLRP2 inflammasome gene distinctly differentiates between patients and healthy controls in the transition between iPS cell and neural stem cell stages

Vizlin-Hodzic D, Zhai Q, Illes S, ..., Ågren H, Funa K

Transl Psychiatry 7 (1) e1010 [2017-01-24; online 2017-01-24]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling.

Masoumi KC, Daams R, Sime W, ..., Levander F, Massoumi R

pii: mbc.E16-07-0547 pmc: PMC5231902

Mol. Biol. Cell 28 (2) 346-355 [2017-01-15; online 2016-11-30]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes

Le Rhun A, Lécrivain AL, Reimegård J, ..., Della Beffa C, Charpentier E

Nucleic Acids Res - (-) gkw1316 [2017-01-12; online 2017-01-12]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages.

Kee N, Volakakis N, Kirkeby A, ..., Parmar M, Perlmann T

pii: S1934-5909(16)30343-5

Cell Stem Cell 20 (1) 29-40 [2017-01-05; online 2016-10-27]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Expression of Transient Receptor Potential Channels in the Purified Human Pancreatic β-Cells.

Marabita F, Islam MS

Pancreas 46 (1) 97-101 [2017-01-00; online 2016-07-29]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Both maternal and offspring Elovl2 genotypes determine systemic DHA levels in perinatal mice.

Pauter AM, Trattner S, Gonzalez-Bengtsson A, ..., Dethlefsen O, Jacobsson A

pii: jlr.M070862 pmc: PMC5234714

J. Lipid Res. 58 (1) 111-123 [2017-01-00; online 2016-11-20]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog.

Ma W, Gabriel TS, Martis MM, ..., Banaei-Moghaddam AM, Houben A

New Phytol. 213 (2) 916-928 [2017-01-00; online 2016-07-29]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity.

Corcoran MM, Phad GE, Néstor VB, ..., Martin M, Karlsson Hedestam GB

pii: ncomms13642 pmc: PMC5187446

Nat Commun 7 (-) 13642 [2016-12-20; online 2016-12-20]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Spatial subsidies in spider diets vary with shoreline structure: Complementary evidence from molecular diet analysis and stable isotopes.

Hambäck PA, Weingartner E, Dalén L, Wirta H, Roslin T

pii: ECE32536 pmc: PMC5167037

Ecol Evol 6 (23) 8431-8439 [2016-12-00; online 2016-10-26]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Identification of Shared and Unique Serum Lipid Profiles in Diabetes Mellitus and Myocardial Infarction

Kjellqvist S, Klose C, Surma MA, ..., Melander O, Fernandez C

J Am Heart Assoc 5 (12) e004503 [2016-12-00; online 2016-11-29]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Validation and development of MTH1 inhibitors for treatment of cancer.

Warpman Berglund U, Sanjiv K, Gad H, ..., Scobie M, Helleday T

pii: mdw429

Ann. Oncol. 27 (12) 2275-2283 [2016-12-00; online 2016-11-08]

Advanced Mass Spectrometry Proteomics [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Chemical Biology Consortium Sweden (CBCS) [Collaborative] Chemical Proteomics [Service] Clinical Proteomics Mass spectrometry [Collaborative] Drug Discovery and Development (DDD) [Collaborative]

PubMed DOI Crossref

Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles.

Lampa S, Alvarsson J, Spjuth O

pii: 179 pmc: PMC5123367

J Cheminform 8 (-) 67 [2016-11-24; online 2016-11-24]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A microarray whole-genome gene expression dataset in a rat model of inflammatory corneal angiogenesis.

Mukwaya A, Lindvall JM, Xeroudaki M, ..., Jensen LD, Lagali N

pii: sdata2016103 pmc: PMC5119432

Sci Data 3 (-) 160103 [2016-11-22; online 2016-11-22]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

WhatsHap: fast and accurate read-based phasing

Martin M, Patterson M, Garg S, ..., Schoenhuth A, Marschall T

bioRxiv - (-) - [2016-11-02; online 2016-11-02]

Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Deletion of FtsH11 protease has impact on chloroplast structure and function in Arabidopsis thaliana when grown under continuous light.

Wagner R, von Sydow L, Aigner H, ..., Clarke A, Funk C

Plant Cell Environ. 39 (11) 2530-2544 [2016-11-00; online 2016-08-02]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Computational pan-genomics: status, promises and challenges.

Computational Pan-Genomics Consortium

pii: bbw089

Brief. Bioinformatics - (-) - [2016-10-21; online 2016-10-21]

Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Integrative analysis of human omics data using biomolecular networks.

Robinson JL, Nielsen J

Mol Biosyst 12 (10) 2953-2964 [2016-10-20; online 2016-08-12]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Massive and parallel expression profiling using microarrayed single-cell sequencing.

Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J

pii: ncomms13182 pmc: PMC5067491

Nat Commun 7 (-) 13182 [2016-10-14; online 2016-10-14]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock.

Bagnoud A, Chourey K, Hettich RL, ..., Schwyn B, Bernier-Latmani R

pii: ncomms12770 pmc: PMC5067608

Nat Commun 7 (-) 12770 [2016-10-14; online 2016-10-14]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

ProQ3: Improved model quality assessments using Rosetta energy terms.

Uziela K, Shu N, Wallner B, Elofsson A

pii: srep33509 pmc: PMC5048106

Sci Rep 6 (-) 33509 [2016-10-04; online 2016-10-04]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Factors regulating capillary remodeling in a reversible model of inflammatory corneal angiogenesis

Mukwaya A, Peebo B, Xeroudaki M, ..., Jensen L, Lagali N

Sci Rep 6 (1) - [2016-10-00; online 2016-08-26]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML.

Lindblad O, Cordero E, Puissant A, ..., Rönnstrand L, Kazi JU

pii: onc201641

Oncogene 35 (39) 5119-5131 [2016-09-29; online 2016-03-22]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes.

Lindqvist CM, Lundmark A, Nordlund J, ..., Berglund EC, Syvänen AC

pii: 11773 pmc: PMC5325426

Oncotarget 7 (39) 64071-64088 [2016-09-27; online 2016-09-04]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Combinatorial identification of DNA methylation patterns over age in the human brain.

Torabi Moghadam B, Dabrowski M, Kaminska B, Grabherr MG, Komorowski J

pii: 10.1186/s12859-016-1259-3 pmc: PMC5034667

BMC Bioinformatics 17 (1) 393 [2016-09-23; online 2016-09-23]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

DOI Crossref

Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa

Antonelli A, Hettling H, Condamine FL, ..., Oxelman B, Vos RA

Syst Biol - (-) syw066 [2016-09-10; online 2016-09-10]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Bacterial associations reveal spatial population dynamics in Anopheles gambiae mosquitoes

Buck M, Nilsson LKJ, Brunius C, ..., Hopkins R, Terenius O

Sci Rep 6 (1) - [2016-09-00; online 2016-03-10]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

The distribution of α-kleisin during meiosis in the holocentromeric plant Luzula elegans.

Ma W, Schubert V, Martis MM, ..., Cheng Z, Houben A

pii: 10.1007/s10577-016-9529-5

Chromosome Res. 24 (3) 393-405 [2016-09-00; online 2016-06-14]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts.

Lindholm ME, Giacomello S, Werne Solnestam B, ..., Kjellqvist S, Sundberg CJ

pmc: PMC5033478 pii: PGENETICS-D-16-01025

PLoS Genet. 12 (9) e1006294 [2016-09-00; online 2016-09-22]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Advancing the global proteome survey platform by using an oriented single chain antibody fragment immobilization approach

Säll A, Persson H, Ohlin M, Borrebaeck CAK, Wingren C

New Biotechnology 33 (5) 503-513 [2016-09-00; online 2016-09-00]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

The Adipose Transcriptional Response to Insulin Is Determined by Obesity, Not Insulin Sensitivity.

Rydén M, Hrydziuszko O, Mileti E, ..., Daub CO, Arner P

pii: S2211-1247(16)31014-2

Cell Rep 16 (9) 2317-2326 [2016-08-30; online 2016-08-23]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Large-scale ligand-based predictive modelling using support vector machines.

Alvarsson J, Lampa S, Schaal W, ..., Wikberg JE, Spjuth O

pii: 151 pmc: PMC4980776

J Cheminform 8 (-) 39 [2016-08-10; online 2016-08-10]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Compounds from the marine sponge Cribrochalina vasculum offer a way to target IGF-1R mediated signaling in tumor cells

Zovko A, Novak M, Hååg P, ..., Lewensohn R, Viktorsson K

Oncotarget 7 (31) 50258-50276 [2016-08-02; online 2016-07-01]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

DOI Crossref

SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and Evolution

Töpel M, Zizka A, Calió MF, ..., Silvestro D, Antonelli A

Syst Biol - (-) syw064 [2016-08-02; online 2016-08-02]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies.

Norling M, Karlsson-Lindsjö OE, Gourlé H, Bongcam-Rudloff E, Hayer J

pii: PONE-D-16-12234 pmc: PMC4968819

PLoS ONE 11 (8) e0160334 [2016-08-01; online 2016-08-01]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Serum nuclear magnetic resonance-based metabolomics and outcome in diffuse large B-cell lymphoma patients - a pilot study.

Stenson M, Pedersen A, Hasselblom S, ..., Pinto R, Andersson PO

Leuk. Lymphoma 57 (8) 1814-1822 [2016-08-00; online 2016-02-17]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria.

Eiler A, Mondav R, Sinclair L, ..., Woyke T, Bertilsson S

pii: ismej2015260 pmc: PMC5029164

ISME J 10 (8) 1902-1914 [2016-08-00; online 2016-01-20]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training Microbial Single Cell Genomics [Collaborative]

PubMed DOI Crossref

Transcriptomic analysis reveals how a lack of potassium ions increases Sulfolobus acidocaldarius sensitivity to pH changes.

Buetti-Dinh A, Dethlefsen O, Friedman R, Dopson M

Microbiology (Reading, Engl.) 162 (8) 1422-1434 [2016-08-00; online 2016-05-28]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Short Chain Fatty Acids (SCFA) Reprogram Gene Expression in Human Malignant Epithelial and Lymphoid Cells.

Astakhova L, Ngara M, Babich O, ..., Ernberg I, Matskova L

pii: PONE-D-15-52288 pmc: PMC4956219

PLoS ONE 11 (7) e0154102 [2016-07-21; online 2016-07-21]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

DNA Content in Extracellular Vesicles Isolated from Porcine Coronary Venous Blood Directly after Myocardial Ischemic Preconditioning.

Svennerholm K, Rodsand P, Hellman U, ..., Ronquist G, Haney M

pii: PONE-D-16-15607 pmc: PMC4951030

PLoS ONE 11 (7) e0159105 [2016-07-19; online 2016-07-19]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Systematic Analysis Reveals that Cancer Mutations Converge on Deregulated Metabolism of Arachidonate and Xenobiotics.

Gatto F, Schulze A, Nielsen J

pii: S2211-1247(16)30792-6

Cell Rep 16 (3) 878-895 [2016-07-19; online 2016-07-12]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Peroxisome Proliferator-activated Receptor γ Coactivator-1 α Isoforms Selectively Regulate Multiple Splicing Events on Target Genes.

Martínez-Redondo V, Jannig PR, Correia JC, ..., Dahlman-Wright K, Ruas JL

pii: M115.705822 pmc: PMC4946932

J. Biol. Chem. 291 (29) 15169-15184 [2016-07-15; online 2016-05-28]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.

Reischauer S, Stone OA, Villasenor A, ..., Andersson O, Stainier DY

pii: nature18614 SRA: PRJEB13442 GENBANK: LT571435

Nature 535 (7611) 294-298 [2016-07-14; online 2016-07-15]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis.

Lee S, Mardinoglu A, Zhang C, Lee D, Nielsen J

pii: gkw462 pmc: PMC4937331

Nucleic Acids Res. 44 (12) 5529-5539 [2016-07-08; online 2016-05-25]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Ståhl PL, Salmén F, Vickovic S, ..., Lundeberg J, Frisén J

pii: 353/6294/78

Science 353 (6294) 78-82 [2016-07-01; online 2016-07-02]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Fluorescence Tissue Profiling [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Tissue Profiling [Collaborative]

PubMed DOI Crossref

Dinosaur: A Refined Open-Source Peptide MS Feature Detector.

Teleman J, Chawade A, Sandin M, Levander F, Malmström J

pmc: PMC4933939

J. Proteome Res. 15 (7) 2143-2151 [2016-07-01; online 2016-05-26]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.

Humble E, Martinez-Barrio A, Forcada J, ..., Wolf JB, Hoffman JI

GENBANK: SRP064853

Mol Ecol Resour 16 (4) 909-921 [2016-07-00; online 2015-12-20]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Distinct transcription factor complexes act on a permissive chromatin landscape to establish regionalized gene expression in CNS stem cells.

Hagey DW, Zaouter C, Combeau G, ..., Huss M, Muhr J

pii: gr.203513.115 pmc: PMC4937566

Genome Res. 26 (7) 908-917 [2016-07-00; online 2016-05-20]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The role of germline alterations in the DNA damage response genes BRIP1 and BRCA2 in melanoma susceptibility.

Tuominen R, Engström PG, Helgadottir H, ..., Hansson J, Höiom V

Genes Chromosomes Cancer 55 (7) 601-611 [2016-07-00; online 2016-04-14]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics.

Fernandez-Ricaud L, Kourtchenko O, Zackrisson M, Warringer J, Blomberg A

pii: 10.1186/s12859-016-1134-2 pmc: PMC4917999

BMC Bioinformatics 17 (-) 249 [2016-06-23; online 2016-06-23]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Read-based phasing of related individuals.

Garg S, Martin M, Marschall T

pii: btw276 pmc: PMC4908360

Bioinformatics 32 (12) i234-i242 [2016-06-15; online 2016-06-17]

Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma.

Gatto F, Volpi N, Nilsson H, ..., Basso U, Nielsen J

pii: S2211-1247(16)30500-9

Cell Rep 15 (8) 1822-1836 [2016-05-24; online 2016-05-18]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution.

Díez B, Nylander JA, Ininbergs K, ..., Rusch DB, Bergman B

pii: PONE-D-15-30061 pmc: PMC4890579 ENA: PRJEB8968

PLoS ONE 11 (5) e0155757 [2016-05-19; online 2016-05-19]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins.

Hayat S, Peters C, Shu N, Tsirigos KD, Elofsson A

pii: btw025

Bioinformatics 32 (10) 1571-1573 [2016-05-15; online 2016-01-23]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)

Nilsson RH, Alm Rosenblad M, Martín MP, ..., Wurzbacher C, Abarenkov K

MycoKeys 13 (-) 21-33 [2016-05-13; online 2016-05-13]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Changes in variation at the MHC class II DQA locus during the final demise of the woolly mammoth.

Pečnerová P, Díez-Del-Molino D, Vartanyan S, Dalén L

pii: srep25274 pmc: PMC4855147

Sci Rep 6 (-) 25274 [2016-05-04; online 2016-05-04]

Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.

Martinez Barrio A, Lamichhaney S, Fan G, ..., Xu X, Andersson L

pmc: PMC4854517 NCBI Assembly: GCA_000966335.1 Dryad: 10.5061/dryad.5r774 SRA: SRP017094 SRA: SRP017095 SRA: SRP056617

Elife 5 (-) - [2016-05-03; online 2016-05-03]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Regulating retrotransposon activity through the use of alternative transcription start sites.

Persson J, Steglich B, Smialowska A, ..., Nielsen O, Ekwall K

pii: embr.201541866 pmc: PMC5341516

EMBO Rep. 17 (5) 753-768 [2016-05-00; online 2016-02-22]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Bioinformatics and Expression Analysis (BEA) [Service]

PubMed DOI Crossref

The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.

Engel P, Kwong WK, McFrederick Q, ..., vanEngelsdorp D, Dainat B

pii: mBio.02164-15 pmc: PMC4850275

MBio 7 (2) e02164-e02115 [2016-04-26; online 2016-04-26]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

EPH/ephrin profile and EPHB2 expression predicts patient survival in breast cancer.

Husa AM, Magić Ž, Larsson M, Fornander T, Pérez-Tenorio G

pii: 7246 pmc: PMC5008291

Oncotarget 7 (16) 21362-21380 [2016-04-19; online 2016-02-13]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Improved topology prediction using the terminal hydrophobic helices rule.

Peters C, Tsirigos KD, Shu N, Elofsson A

pii: btv709

Bioinformatics 32 (8) 1158-1162 [2016-04-15; online 2015-12-09]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Identification and Characterization of IgdE, a Novel IgG-degrading Protease of Streptococcus suis with Unique Specificity for Porcine IgG.

Spoerry C, Seele J, Valentin-Weigand P, Baums CG, von Pawel-Rammingen U

pii: M115.711440 pmc: PMC4824999

J. Biol. Chem. 291 (15) 7915-7925 [2016-04-08; online 2016-02-11]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Transcriptomics resources of human tissues and organs.

Uhlén M, Hallström BM, Lindskog C, ..., Pontén F, Nielsen J

pmc: PMC4848759

Mol. Syst. Biol. 12 (4) 862 [2016-04-04; online 2016-04-04]

Bioinformatics Support, Infrastructure and Training [Technology development] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Systems Biology [Technology development] Tissue Profiling [Collaborative]

PubMed DOI Crossref

Global genome splicing analysis reveals an increased number of alternatively spliced genes with aging.

Rodríguez SA, Grochová D, McKenna T, ..., Erdos MR, Eriksson M

pmc: PMC4783335

Aging Cell 15 (2) 267-278 [2016-04-00; online 2015-12-22]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Whole-body fat oxidation increases more by prior exercise than overnight fasting in elite endurance athletes.

Andersson Hall U, Edin F, Pedersen A, Madsen K

Appl Physiol Nutr Metab 41 (4) 430-437 [2016-04-00; online 2015-12-17]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

RNA transcript sequencing reveals inorganic sulfur compound oxidation pathways in the acidophile Acidithiobacillus ferrivorans.

Christel S, Fridlund J, Buetti-Dinh A, ..., Watkin EL, Dopson M

pii: fnw057

FEMS Microbiol. Lett. 363 (7) - [2016-04-00; online 2016-03-10]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

VEGFR2 pY949 signalling regulates adherens junction integrity and metastatic spread.

Li X, Padhan N, Sjöström EO, ..., Jansson L, Claesson-Welsh L

pii: ncomms11017 pmc: PMC4814575

Nat Commun 7 (-) 11017 [2016-03-23; online 2016-03-23]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

In Situ Staining and Laser Capture Microdissection of Lymph Node Residing SIV Gag-Specific CD8+ T cells--A Tool to Interrogate a Functional Immune Response Ex Vivo.

Tjernlund A, Burgener A, Lindvall JM, ..., McElrath MJ, Corey L

pii: PONE-D-15-46881 pmc: PMC4795610

PLoS ONE 11 (3) e0149907 [2016-03-17; online 2016-03-17]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden.

Zepeda Mendoza ML, Lundberg J, Ivarsson M, ..., Sallstedt T, Dalen L

pii: PONE-D-15-42576 pmc: PMC4795671

PLoS ONE 11 (3) e0151577 [2016-03-17; online 2016-03-17]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

The role of transposable elements for gene expression in Capsella hybrids and allopolyploids

Steige K, Reimegård J, Rebernig CA, ..., Scofield DG, Slotte T

bioRxiv - (-) - [2016-03-16; online 2016-03-16]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The FAIR Guiding Principles for scientific data management and stewardship.

Wilkinson MD, Dumontier M, Aalbersberg IJ, ..., Zhao J, Mons B

pii: sdata201618 pmc: PMC4792175

Sci Data 3 (-) 160018 [2016-03-15; online 2016-03-15]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly.

Celorio-Mancera Mde L, Wheat CW, Huss M, ..., Nylin S, Janz N

pii: 10.1186/s12862-016-0627-y pmc: PMC4782335 ArrayExpress: E-MTAB-3861

BMC Evol. Biol. 16 (-) 59 [2016-03-08; online 2016-03-08]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Collaborative] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Systematic analysis of overall survival and interactions between tumor mutations and drug treatment.

Gatto F, Nielsen J

pii: 10.1186/s13045-016-0249-2 pmc: PMC4774108

J Hematol Oncol 9 (-) 15 [2016-03-02; online 2016-03-02]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

PubMed DOI Crossref

Altered DNA methylation of glycolytic and lipogenic genes in liver from obese and type 2 diabetic patients.

Kirchner H, Sinha I, Gao H, ..., Dahlman-Wright K, Zierath JR

pii: S2212-8778(15)00234-3 pmc: PMC4770265

Mol Metab 5 (3) 171-183 [2016-03-00; online 2016-01-02]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors.

Shah F, Nicolás C, Bentzer J, ..., Persson P, Tunlid A

pmc: PMC5061094

New Phytol. 209 (4) 1705-1719 [2016-03-00; online 2015-11-04]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

PubMed DOI Crossref

Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species.

Wang J, Street NR, Scofield DG, Ingvarsson PK

pii: genetics.115.183152 pmc: PMC4788117

Genetics 202 (3) 1185-1200 [2016-03-00; online 2016-01-02]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A Multiplex Protein Panel Applied to Cerebrospinal Fluid Reveals Three New Biomarker Candidates in ALS but None in Neuropathic Pain Patients

Lind AL, Wu D, Freyhult E, ..., Landegren U, Kamali-Moghaddam M

PLoS ONE 11 (2) e0149821 [2016-02-25; online 2016-02-25]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] PLA and Single Cell Proteomics [Technology development]

PubMed DOI Crossref

Postprandial metabolomics: A pilot mass spectrometry and NMR study of the human plasma metabolome in response to a challenge meal.

Karimpour M, Surowiec I, Wu J, ..., Zivkovic AM, Nording ML

pii: S0003-2670(15)30040-4

Anal. Chim. Acta 908 (-) 121-131 [2016-02-18; online 2016-01-31]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development.

Obudulu O, Bygdell J, Sundberg B, ..., Trygg J, Wingsle G

pii: 10.1186/s12864-016-2458-z pmc: PMC4758094

BMC Genomics 17 (-) 119 [2016-02-18; online 2016-02-18]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

Olsen JL, Rouzé P, Verhelst B, ..., Reusch TB, Van de Peer Y

pii: nature16548 BioProject: PRJNA41721 GENBANK: KG963492 GENBANK: KG963493 GENBANK: KG963494 GENBANK: KG963495 GENBANK: KG963496 GENBANK: KG963497 GENBANK: KG963498 GENBANK: KG963499 GENBANK: KG963500 GENBANK: KG963501 GENBANK: KG963502 GENBANK: KG963503 GENBANK: KG963504 GENBANK: KG963505 GENBANK: KG963506 GENBANK: KG963507 GENBANK: KG963508 GENBANK: KG963509 GENBANK: KG963510 GENBANK: KG963511 GENBANK: KG963512 GENBANK: KG963513 GENBANK: KG963514 GENBANK: KG963515 GENBANK: KG963516 GENBANK: KG963517 GENBANK: KG963518 GENBANK: KG963519 GENBANK: KG963520 GENBANK: KG963521 GENBANK: KG963522 GENBANK: KG963523 GENBANK: KG963524 GENBANK: KG963525 GENBANK: KG963526 GENBANK: KG963527 GENBANK: KG963528 GENBANK: KG963529 GENBANK: KG963530 GENBANK: KG963531 GENBANK: KG963532 GENBANK: KG963533 GENBANK: KG963534 GENBANK: KG963535 GENBANK: KG963536 GENBANK: KG963537 GENBANK: KG963538 GENBANK: KG963539 GENBANK: KG963540 GENBANK: KG963541 GENBANK: KG963542 GENBANK: KG963543 GENBANK: KG963544 GENBANK: KG963545 GENBANK: KG963546 GENBANK: KG963547 GENBANK: KG963548 GENBANK: KG963549 GENBANK: KG963550 GENBANK: KG963551 GENBANK: KG963552 GENBANK: KG963553 GENBANK: KG963554 GENBANK: KG963555 GENBANK: KG963556 GENBANK: KG963557 GENBANK: KG963558 GENBANK: KG963559 GENBANK: KG963560 GENBANK: KG963561 GENBANK: KG963562 GENBANK: KG963563 GENBANK: KG963564 GENBANK: KG963565 GENBANK: KG963566 GENBANK: KG963567 GENBANK: KG963568 GENBANK: KG963569 GENBANK: KG963570 GENBANK: KG963571 GENBANK: KG963572 GENBANK: KG963573 GENBANK: KG963574 GENBANK: KG963575 GENBANK: KG963576 GENBANK: KG963577 GENBANK: KG963578 GENBANK: KG963579 GENBANK: KG963580 GENBANK: KG963581 GENBANK: KG963582 GENBANK: KG963583 GENBANK: KG963584 GENBANK: KG963585 GENBANK: KG963586 GENBANK: KG963587 GENBANK: KG963588 GENBANK: KG963589 GENBANK: KG963590 GENBANK: KG963591 GENBANK: KG963592 GENBANK: KG963593 GENBANK: KG963594 GENBANK: KG963595 GENBANK: KG963596 GENBANK: KG963597 GENBANK: KG963598 GENBANK: KG963599 GENBANK: KG963600 GENBANK: KG963601 GENBANK: KG963602 GENBANK: KG963603 GENBANK: KG963604 GENBANK: KG963605 GENBANK: KG963606 GENBANK: KG963607 GENBANK: KG963608 GENBANK: KG963609 GENBANK: KG963610 GENBANK: KG963611 GENBANK: KG963612 GENBANK: KG963613 GENBANK: KG963614 GENBANK: KG963615 GENBANK: KG963616 GENBANK: KG963617 GENBANK: KG963618 GENBANK: KG963619 GENBANK: KG963620 GENBANK: KG963621 GENBANK: KG963622 GENBANK: KG963623 GENBANK: KG963624 GENBANK: KG963625 GENBANK: KG963626 GENBANK: KG963627 GENBANK: KG963628 GENBANK: KG963629 GENBANK: KG963630 GENBANK: KG963631 GENBANK: KG963632 GENBANK: KG963633 GENBANK: KG963634 GENBANK: KG963635 GENBANK: KG963636 GENBANK: KG963637 GENBANK: KG963638 GENBANK: KG963639 GENBANK: KG963640 GENBANK: KG963641 GENBANK: KG963642 GENBANK: KG963643 GENBANK: KG963644 GENBANK: KG963645 GENBANK: KG963646 GENBANK: KG963647 GENBANK: KG963648 GENBANK: KG963649 GENBANK: KG963650 GENBANK: KG963651 GENBANK: KG963652 GENBANK: KG963653 GENBANK: KG963654 GENBANK: KG963655 GENBANK: KG963656 GENBANK: KG963657 GENBANK: KG963658 GENBANK: KG963659 GENBANK: KG963660 GENBANK: KG963661 GENBANK: KG963662 GENBANK: KG963663 GENBANK: KG963664 GENBANK: KG963665 GENBANK: KG963666 GENBANK: KG963667 GENBANK: KG963668 GENBANK: KG963669 GENBANK: KG963670 GENBANK: KG963671 GENBANK: KG963672 GENBANK: KG963673 GENBANK: KG963674 GENBANK: KG963675 GENBANK: KG963676 GENBANK: KG963677 GENBANK: KG963678 GENBANK: KG963679 GENBANK: KG963680 GENBANK: KG963681 GENBANK: KG963682 GENBANK: KG963683 GENBANK: KG963684 GENBANK: KG963685 GENBANK: KG963686 GENBANK: KG963687 GENBANK: KG963688 GENBANK: KG963689 GENBANK: KG963690 GENBANK: KG963691 GENBANK: KG963692 GENBANK: KG963693 GENBANK: KG963694 GENBANK: KG963695 GENBANK: KG963696 GENBANK: KG963697 GENBANK: KG963698 GENBANK: KG963699 GENBANK: KG963700 GENBANK: KG963701 GENBANK: KG963702 GENBANK: KG963703 GENBANK: KG963704 GENBANK: KG963705 GENBANK: KG963706 GENBANK: KG963707 GENBANK: KG963708 GENBANK: KG963709 GENBANK: KG963710 GENBANK: KG963711 GENBANK: KG963712 GENBANK: KG963713 GENBANK: KG963714 GENBANK: KG963715 GENBANK: KG963716 GENBANK: KG963717 GENBANK: KG963718 GENBANK: KG963719 GENBANK: KG963720 GENBANK: KG963721 GENBANK: KG963722 GENBANK: KG963723 GENBANK: KG963724 GENBANK: KG963725 GENBANK: KG963726 GENBANK: KG963727 GENBANK: KG963728 GENBANK: KG963729 GENBANK: KG963730 GENBANK: KG963731 GENBANK: KG963732 GENBANK: KG963733 GENBANK: KG963734 GENBANK: KG963735 GENBANK: KG963736 GENBANK: KG963737 GENBANK: KG963738 GENBANK: KG963739 GENBANK: KG963740 GENBANK: KG963741 GENBANK: KG963742 GENBANK: KG963743 GENBANK: KG963744 GENBANK: KG963745 GENBANK: KG963746 GENBANK: KG963747 GENBANK: KG963748 GENBANK: KG963749 GENBANK: KG963750 GENBANK: KG963751 GENBANK: KG963752 GENBANK: KG963753 GENBANK: KG963754 GENBANK: KG963755 GENBANK: KG963756 GENBANK: KG963757 GENBANK: KG963758 GENBANK: KG963759 GENBANK: KG963760 GENBANK: KG963761 GENBANK: KG963762 GENBANK: KG963763 GENBANK: KG963764 GENBANK: KG963765 GENBANK: KG963766 GENBANK: KG963767 GENBANK: KG963768 GENBANK: KG963769 GENBANK: KG963770 GENBANK: KG963771 GENBANK: KG963772 GENBANK: KG963773 GENBANK: KG963774 GENBANK: KG963775 GENBANK: KG963776 GENBANK: KG963777 GENBANK: KG963778 GENBANK: KG963779 GENBANK: KG963780 GENBANK: KG963781 GENBANK: KG963782 GENBANK: KG963783 GENBANK: KG963784 GENBANK: KG963785 GENBANK: KG963786 GENBANK: KG963787 GENBANK: KG963788 GENBANK: KG963789 GENBANK: KG963790 GENBANK: KG963791 GENBANK: KG963792 GENBANK: KG963793 GENBANK: KG963794 GENBANK: KG963795 GENBANK: KG963796 GENBANK: KG963797 GENBANK: KG963798 GENBANK: KG963799 GENBANK: KG963800 GENBANK: KG963801 GENBANK: KG963802 GENBANK: KG963803 GENBANK: KG963804 GENBANK: KG963805 GENBANK: KG963806 GENBANK: KG963807 GENBANK: KG963808 GENBANK: KG963809 GENBANK: KG963810 GENBANK: KG963811 GENBANK: KG963812 GENBANK: KG963813 GENBANK: KG963814 GENBANK: KG963815 GENBANK: KG963816 GENBANK: KG963817 GENBANK: KG963818 GENBANK: KG963819 GENBANK: KG963820 GENBANK: KG963821 GENBANK: KG963822 GENBANK: KG963823 GENBANK: KG963824 GENBANK: KG963825 GENBANK: KG963826 GENBANK: KG963827 GENBANK: KG963828 GENBANK: KG963829 GENBANK: KG963830 GENBANK: KG963831 GENBANK: KG963832 GENBANK: KG963833 GENBANK: KG963834 GENBANK: KG963835 GENBANK: KG963836 GENBANK: KG963837 GENBANK: KG963838 GENBANK: KG963839 GENBANK: KG963840 GENBANK: KG963841 GENBANK: KG963842 GENBANK: KG963843 GENBANK: KG963844 GENBANK: KG963845 GENBANK: KG963846 GENBANK: KG963847 GENBANK: KG963848 GENBANK: KG963849 GENBANK: KG963850 GENBANK: KG963851 GENBANK: KG963852 GENBANK: KG963853 GENBANK: KG963854 GENBANK: KG963855 GENBANK: KG963856 GENBANK: KG963857 GENBANK: KG963858 GENBANK: KG963859 GENBANK: KG963860 GENBANK: KG963861 GENBANK: KG963862 GENBANK: KG963863 GENBANK: KG963864 GENBANK: KG963865 GENBANK: KG963866 GENBANK: KG963867 GENBANK: KG963868 GENBANK: KG963869 GENBANK: KG963870 GENBANK: KG963871 GENBANK: KG963872 GENBANK: KG963873 GENBANK: KG963874 GENBANK: KG963875 GENBANK: KG963876 GENBANK: KG963877 GENBANK: KG963878 GENBANK: KG963879 GENBANK: KG963880 GENBANK: KG963881 GENBANK: KG963882 GENBANK: KG963883 GENBANK: KG963884 GENBANK: KG963885 GENBANK: KG963886 GENBANK: KG963887 GENBANK: KG963888 GENBANK: KG963889 GENBANK: KG963890 GENBANK: KG963891 GENBANK: KG963892 GENBANK: KG963893 GENBANK: KG963894 GENBANK: KG963895 GENBANK: KG963896 GENBANK: KG963897 GENBANK: KG963898 GENBANK: KG963899 GENBANK: KG963900 GENBANK: KG963901 GENBANK: KG963902 GENBANK: KG963903 GENBANK: KG963904 GENBANK: KG963905 GENBANK: KG963906 GENBANK: KG963907 GENBANK: KG963908 GENBANK: KG963909 GENBANK: KG963910 GENBANK: KG963911 GENBANK: KG963912 GENBANK: KG963913 GENBANK: KG963914 GENBANK: KG963915 GENBANK: KG963916 GENBANK: KG963917 GENBANK: KG963918 GENBANK: KG963919 GENBANK: KG963920 GENBANK: KG963921 GENBANK: KG963922 GENBANK: KG963923 GENBANK: KG963924 GENBANK: KG963925 GENBANK: KG963926 GENBANK: KG963927 GENBANK: KG963928 GENBANK: KG963929 GENBANK: KG963930 GENBANK: KG963931 GENBANK: KG963932 GENBANK: KG963933 GENBANK: KG963934 GENBANK: KG963935 GENBANK: KG963936 GENBANK: KG963937 GENBANK: KG963938 GENBANK: KG963939 GENBANK: KG963940 GENBANK: KG963941 GENBANK: KG963942 GENBANK: KG963943 GENBANK: KG963944 GENBANK: KG963945 GENBANK: KG963946 GENBANK: KG963947 GENBANK: KG963948 GENBANK: KG963949 GENBANK: KG963950 GENBANK: KG963951 GENBANK: KG963952 GENBANK: KG963953 GENBANK: KG963954 GENBANK: KG963955 GENBANK: KG963956 GENBANK: KG963957 GENBANK: KG963958 GENBANK: KG963959 GENBANK: KG963960 GENBANK: KG963961 GENBANK: KG963962 GENBANK: KG963963 GENBANK: KG963964 GENBANK: KG963965 GENBANK: KG963966 GENBANK: KG963967 GENBANK: KG963968 GENBANK: KG963969 GENBANK: KG963970 GENBANK: KG963971 GENBANK: KG963972 GENBANK: KG963973 GENBANK: KG963974 GENBANK: KG963975 GENBANK: KG963976 GENBANK: KG963977 GENBANK: KG963978 GENBANK: KG963979 GENBANK: KG963980 GENBANK: KG963981 GENBANK: KG963982 GENBANK: KG963983 GENBANK: KG963984 GENBANK: KG963985 GENBANK: KG963986 GENBANK: KG963987 GENBANK: KG963988 GENBANK: KG963989 GENBANK: KG963990 GENBANK: KG963991 GENBANK: KG963992 GENBANK: KG963993 GENBANK: KG963994 GENBANK: KG963995 GENBANK: KG963996 GENBANK: KG963997 GENBANK: KG963998 GENBANK: KG963999 GENBANK: KG964000 GENBANK: KG964001 GENBANK: KG964002 GENBANK: KG964003 GENBANK: KG964004 GENBANK: KG964005 GENBANK: KG964006 GENBANK: KG964007 GENBANK: KG964008 GENBANK: KG964009 GENBANK: KG964010 GENBANK: KG964011 GENBANK: KG964012 GENBANK: KG964013 GENBANK: KG964014 GENBANK: KG964015 GENBANK: KG964016 GENBANK: KG964017 GENBANK: KG964018 GENBANK: KG964019 GENBANK: KG964020 GENBANK: KG964021 GENBANK: KG964022 GENBANK: KG964023 GENBANK: KG964024 GENBANK: KG964025 GENBANK: KG964026 GENBANK: KG964027 GENBANK: KG964028 GENBANK: KG964029 GENBANK: KG964030 GENBANK: KG964031 GENBANK: KG964032 GENBANK: KG964033 GENBANK: KG964034 GENBANK: KG964035 GENBANK: KG964036 GENBANK: KG964037 GENBANK: KG964038 GENBANK: KG964039 GENBANK: KG964040 GENBANK: KG964041 GENBANK: KG964042 GENBANK: KG964043 GENBANK: KG964044 GENBANK: KG964045 GENBANK: KG964046 GENBANK: KG964047 GENBANK: KG964048 GENBANK: KG964049 GENBANK: KG964050 GENBANK: KG964051 GENBANK: KG964052 GENBANK: KG964053 GENBANK: KG964054 GENBANK: KG964055 GENBANK: KG964056 GENBANK: KG964057 GENBANK: KG964058 GENBANK: KG964059 GENBANK: KG964060 GENBANK: KG964061 GENBANK: KG964062 GENBANK: KG964063 GENBANK: KG964064 GENBANK: KG964065 GENBANK: KG964066 GENBANK: KG964067 GENBANK: KG964068 GENBANK: KG964069 GENBANK: KG964070 GENBANK: KG964071 GENBANK: KG964072 GENBANK: KG964073 GENBANK: KG964074 GENBANK: KG964075 GENBANK: KG964076 GENBANK: KG964077 GENBANK: KG964078 GENBANK: KG964079 GENBANK: KG964080 GENBANK: KG964081 GENBANK: KG964082 GENBANK: KG964083 GENBANK: KG964084 GENBANK: KG964085 GENBANK: KG964086 GENBANK: KG964087 GENBANK: KG964088 GENBANK: KG964089 GENBANK: KG964090 GENBANK: KG964091 GENBANK: KG964092 GENBANK: KG964093 GENBANK: KG964094 GENBANK: KG964095 GENBANK: KG964096 GENBANK: KG964097 GENBANK: KG964098 GENBANK: KG964099 GENBANK: KG964100 GENBANK: KG964101 GENBANK: KG964102 GENBANK: KG964103 GENBANK: KG964104 GENBANK: KG964105 GENBANK: KG964106 GENBANK: KG964107 GENBANK: KG964108 GENBANK: KG964109 GENBANK: KG964110 GENBANK: KG964111 GENBANK: KG964112 GENBANK: KG964113 GENBANK: KG964114 GENBANK: KG964115 GENBANK: KG964116 GENBANK: KG964117 GENBANK: KG964118 GENBANK: KG964119 GENBANK: KG964120 GENBANK: KG964121 GENBANK: KG964122 GENBANK: KG964123 GENBANK: KG964124 GENBANK: KG964125 GENBANK: KG964126 GENBANK: KG964127 GENBANK: KG964128 GENBANK: KG964129 GENBANK: KG964130 GENBANK: KG964131 GENBANK: KG964132 GENBANK: KG964133 GENBANK: KG964134 GENBANK: KG964135 GENBANK: KG964136 GENBANK: KG964137 GENBANK: KG964138 GENBANK: KG964139 GENBANK: KG964140 GENBANK: KG964141 GENBANK: KG964142 GENBANK: KG964143 GENBANK: KG964144 GENBANK: KG964145 GENBANK: KG964146 GENBANK: KG964147 GENBANK: KG964148 GENBANK: KG964149 GENBANK: KG964150 GENBANK: KG964151 GENBANK: KG964152 GENBANK: KG964153 GENBANK: KG964154 GENBANK: KG964155 GENBANK: KG964156 GENBANK: KG964157 GENBANK: KG964158 GENBANK: KG964159 GENBANK: KG964160 GENBANK: KG964161 GENBANK: KG964162 GENBANK: KG964163 GENBANK: KG964164 GENBANK: KG964165 GENBANK: KG964166 GENBANK: KG964167 GENBANK: KG964168 GENBANK: KG964169 GENBANK: KG964170 GENBANK: KG964171 GENBANK: KG964172 GENBANK: KG964173 GENBANK: KG964174 GENBANK: KG964175 GENBANK: KG964176 GENBANK: KG964177 GENBANK: KG964178 GENBANK: KG964179 GENBANK: KG964180 GENBANK: KG964181 GENBANK: KG964182 GENBANK: KG964183 GENBANK: KG964184 GENBANK: KG964185 GENBANK: KG964186 GENBANK: KG964187 GENBANK: KG964188 GENBANK: KG964189 GENBANK: KG964190 GENBANK: KG964191 GENBANK: KG964192 GENBANK: KG964193 GENBANK: KG964194 GENBANK: KG964195 GENBANK: KG964196 GENBANK: KG964197 GENBANK: KG964198 GENBANK: KG964199 GENBANK: KG964200 GENBANK: KG964201 GENBANK: KG964202 GENBANK: KG964203 GENBANK: KG964204 GENBANK: KG964205 GENBANK: KG964206 GENBANK: KG964207 GENBANK: KG964208 GENBANK: KG964209 GENBANK: KG964210 GENBANK: KG964211 GENBANK: KG964212 GENBANK: KG964213 GENBANK: KG964214 GENBANK: KG964215 GENBANK: KG964216 GENBANK: KG964217 GENBANK: KG964218 GENBANK: KG964219 GENBANK: KG964220 GENBANK: KG964221 GENBANK: KG964222 GENBANK: KG964223 GENBANK: KG964224 GENBANK: KG964225 GENBANK: KG964226 GENBANK: KG964227 GENBANK: KG964228 GENBANK: KG964229 GENBANK: KG964230 GENBANK: KG964231 GENBANK: KG964232 GENBANK: KG964233 GENBANK: KG964234 GENBANK: KG964235 GENBANK: KG964236 GENBANK: KG964237 GENBANK: KG964238 GENBANK: KG964239 GENBANK: KG964240 GENBANK: KG964241 GENBANK: KG964242 GENBANK: KG964243 GENBANK: KG964244 GENBANK: KG964245 GENBANK: KG964246 GENBANK: KG964247 GENBANK: KG964248 GENBANK: KG964249 GENBANK: KG964250 GENBANK: KG964251 GENBANK: KG964252 GENBANK: KG964253 GENBANK: KG964254 GENBANK: KG964255 GENBANK: KG964256 GENBANK: KG964257 GENBANK: KG964258 GENBANK: KG964259 GENBANK: KG964260 GENBANK: KG964261 GENBANK: KG964262 GENBANK: KG964263 GENBANK: KG964264 GENBANK: KG964265 GENBANK: KG964266 GENBANK: KG964267 GENBANK: KG964268 GENBANK: KG964269 GENBANK: KG964270 GENBANK: KG964271 GENBANK: KG964272 GENBANK: KG964273 GENBANK: KG964274 GENBANK: KG964275 GENBANK: KG964276 GENBANK: KG964277 GENBANK: KG964278 GENBANK: KG964279 GENBANK: KG964280 GENBANK: KG964281 GENBANK: KG964282 GENBANK: KG964283 GENBANK: KG964284 GENBANK: KG964285 GENBANK: KG964286 GENBANK: KG964287 GENBANK: KG964288 GENBANK: KG964289 GENBANK: KG964290 GENBANK: KG964291 GENBANK: KG964292 GENBANK: KG964293 GENBANK: KG964294 GENBANK: KG964295 GENBANK: KG964296 GENBANK: KG964297 GENBANK: KG964298 GENBANK: KG964299 GENBANK: KG964300 GENBANK: KG964301 GENBANK: KG964302 GENBANK: KG964303 GENBANK: KG964304 GENBANK: KG964305 GENBANK: KG964306 GENBANK: KG964307 GENBANK: KG964308 GENBANK: KG964309 GENBANK: KG964310 GENBANK: KG964311 GENBANK: KG964312 GENBANK: KG964313 GENBANK: KG964314 GENBANK: KG964315 GENBANK: KG964316 GENBANK: KG964317 GENBANK: KG964318 GENBANK: KG964319 GENBANK: KG964320 GENBANK: KG964321 GENBANK: KG964322 GENBANK: KG964323 GENBANK: KG964324 GENBANK: KG964325 GENBANK: KG964326 GENBANK: KG964327 GENBANK: KG964328 GENBANK: KG964329 GENBANK: KG964330 GENBANK: KG964331 GENBANK: KG964332 GENBANK: KG964333 GENBANK: KG964334 GENBANK: KG964335 GENBANK: KG964336 GENBANK: KG964337 GENBANK: KG964338 GENBANK: KG964339 GENBANK: KG964340 GENBANK: KG964341 GENBANK: KG964342 GENBANK: KG964343 GENBANK: KG964344 GENBANK: KG964345 GENBANK: KG964346 GENBANK: KG964347 GENBANK: KG964348 GENBANK: KG964349 GENBANK: KG964350 GENBANK: KG964351 GENBANK: KG964352 GENBANK: KG964353 GENBANK: KG964354 GENBANK: KG964355 GENBANK: KG964356 GENBANK: KG964357 GENBANK: KG964358 GENBANK: KG964359 GENBANK: KG964360 GENBANK: KG964361 GENBANK: KG964362 GENBANK: KG964363 GENBANK: KG964364 GENBANK: KG964365 GENBANK: KG964366 GENBANK: KG964367 GENBANK: KG964368 GENBANK: KG964369 GENBANK: KG964370 GENBANK: KG964371 GENBANK: KG964372 GENBANK: KG964373 GENBANK: KG964374 GENBANK: KG964375 GENBANK: KG964376 GENBANK: KG964377 GENBANK: KG964378 GENBANK: KG964379 GENBANK: KG964380 GENBANK: KG964381 GENBANK: KG964382 GENBANK: KG964383 GENBANK: KG964384 GENBANK: KG964385 GENBANK: KG964386 GENBANK: KG964387 GENBANK: KG964388 GENBANK: KG964389 GENBANK: KG964390 GENBANK: KG964391 GENBANK: KG964392 GENBANK: KG964393 GENBANK: KG964394 GENBANK: KG964395 GENBANK: KG964396 GENBANK: KG964397 GENBANK: KG964398 GENBANK: KG964399 GENBANK: KG964400 GENBANK: KG964401 GENBANK: KG964402 GENBANK: KG964403 GENBANK: KG964404 GENBANK: KG964405 GENBANK: KG964406 GENBANK: KG964407 GENBANK: KG964408 GENBANK: KG964409 GENBANK: KG964410 GENBANK: KG964411 GENBANK: KG964412 GENBANK: KG964413 GENBANK: KG964414 GENBANK: KG964415 GENBANK: KG964416 GENBANK: KG964417 GENBANK: KG964418 GENBANK: KG964419 GENBANK: KG964420 GENBANK: KG964421 GENBANK: KG964422 GENBANK: KG964423 GENBANK: KG964424 GENBANK: KG964425 GENBANK: KG964426 GENBANK: KG964427 GENBANK: KG964428 GENBANK: KG964429 GENBANK: KG964430 GENBANK: KG964431 GENBANK: KG964432 GENBANK: KG964433 GENBANK: KG964434 GENBANK: KG964435 GENBANK: KG964436 GENBANK: KG964437 GENBANK: KG964438 GENBANK: KG964439 GENBANK: KG964440 GENBANK: KG964441 GENBANK: KG964442 GENBANK: KG964443 GENBANK: KG964444 GENBANK: KG964445 GENBANK: KG964446 GENBANK: KG964447 GENBANK: KG964448 GENBANK: KG964449 GENBANK: KG964450 GENBANK: KG964451 GENBANK: KG964452 GENBANK: KG964453 GENBANK: KG964454 GENBANK: KG964455 GENBANK: KG964456 GENBANK: KG964457 GENBANK: KG964458 GENBANK: KG964459 GENBANK: KG964460 GENBANK: KG964461 GENBANK: KG964462 GENBANK: KG964463 GENBANK: KG964464 GENBANK: KG964465 GENBANK: KG964466 GENBANK: KG964467 GENBANK: KG964468 GENBANK: KG964469 GENBANK: KG964470 GENBANK: KG964471 GENBANK: KG964472 GENBANK: KG964473 GENBANK: KG964474 GENBANK: KG964475 GENBANK: KG964476 GENBANK: KG964477 GENBANK: KG964478 GENBANK: KG964479 GENBANK: KG964480 GENBANK: KG964481 GENBANK: KG964482 GENBANK: KG964483 GENBANK: KG964484 GENBANK: KG964485 GENBANK: KG964486 GENBANK: KG964487 GENBANK: KG964488 GENBANK: KG964489 GENBANK: KG964490 GENBANK: KG964491 GENBANK: KG964492 GENBANK: KG964493 GENBANK: KG964494 GENBANK: KG964495 GENBANK: KG964496 GENBANK: KG964497 GENBANK: KG964498 GENBANK: KG964499 GENBANK: KG964500 GENBANK: KG964501 GENBANK: KG964502 GENBANK: KG964503 GENBANK: KG964504 GENBANK: KG964505 GENBANK: KG964506 GENBANK: KG964507 GENBANK: KG964508 GENBANK: KG964509 GENBANK: KG964510 GENBANK: KG964511 GENBANK: KG964512 GENBANK: KG964513 GENBANK: KG964514 GENBANK: KG964515 GENBANK: KG964516 GENBANK: KG964517 GENBANK: KG964518 GENBANK: KG964519 GENBANK: KG964520 GENBANK: KG964521 GENBANK: KG964522 GENBANK: KG964523 GENBANK: KG964524 GENBANK: KG964525 GENBANK: KG964526 GENBANK: KG964527 GENBANK: KG964528 GENBANK: KG964529 GENBANK: KG964530 GENBANK: KG964531 GENBANK: KG964532 GENBANK: KG964533 GENBANK: KG964534 GENBANK: KG964535 GENBANK: KG964536 GENBANK: KG964537 GENBANK: KG964538 GENBANK: KG964539 GENBANK: KG964540 GENBANK: KG964541 GENBANK: KG964542 GENBANK: KG964543 GENBANK: KG964544 GENBANK: KG964545 GENBANK: KG964546 GENBANK: KG964547 GENBANK: KG964548 GENBANK: KG964549 GENBANK: KG964550 GENBANK: KG964551 GENBANK: KG964552 GENBANK: KG964553 GENBANK: KG964554 GENBANK: KG964555 GENBANK: KG964556 GENBANK: KG964557 GENBANK: KG964558 GENBANK: KG964559 GENBANK: KG964560 GENBANK: KG964561 GENBANK: KG964562 GENBANK: KG964563 GENBANK: KG964564 GENBANK: KG964565 GENBANK: KG964566 GENBANK: KG964567 GENBANK: KG964568 GENBANK: KG964569 GENBANK: KG964570 GENBANK: KG964571 GENBANK: KG964572 GENBANK: KG964573 GENBANK: KG964574 GENBANK: KG964575 GENBANK: KG964576 GENBANK: KG964577 GENBANK: KG964578 GENBANK: KG964579 GENBANK: KG964580 GENBANK: KG964581 GENBANK: KG964582 GENBANK: KG964583 GENBANK: KG964584 GENBANK: KG964585 GENBANK: KG964586 GENBANK: KG964587 GENBANK: KG964588 GENBANK: KG964589 GENBANK: KG964590 GENBANK: KG964591 GENBANK: KG964592 GENBANK: KG964593 GENBANK: KG964594 GENBANK: KG964595 GENBANK: KG964596 GENBANK: KG964597 GENBANK: KG964598 GENBANK: KG964599 GENBANK: KG964600 GENBANK: KG964601 GENBANK: KG964602 GENBANK: KG964603 GENBANK: KG964604 GENBANK: KG964605 GENBANK: KG964606 GENBANK: KG964607 GENBANK: KG964608 GENBANK: KG964609 GENBANK: KG964610 GENBANK: KG964611 GENBANK: KG964612 GENBANK: KG964613 GENBANK: KG964614 GENBANK: KG964615 GENBANK: KG964616 GENBANK: KG964617 GENBANK: KG964618 GENBANK: KG964619 GENBANK: KG964620 GENBANK: KG964621 GENBANK: KG964622 GENBANK: KG964623 GENBANK: KG964624 GENBANK: KG964625 GENBANK: KG964626 GENBANK: KG964627 GENBANK: KG964628 GENBANK: KG964629 GENBANK: KG964630 GENBANK: KG964631 GENBANK: KG964632 GENBANK: KG964633 GENBANK: KG964634 GENBANK: KG964635 GENBANK: KG964636 GENBANK: KG964637 GENBANK: KG964638 GENBANK: KG964639 GENBANK: KG964640 GENBANK: KG964641 GENBANK: KG964642 GENBANK: KG964643 GENBANK: KG964644 GENBANK: KG964645 GENBANK: KG964646 GENBANK: KG964647 GENBANK: KG964648 GENBANK: KG964649 GENBANK: KG964650 GENBANK: KG964651 GENBANK: KG964652 GENBANK: KG964653 GENBANK: KG964654 GENBANK: KG964655 GENBANK: KG964656 GENBANK: KG964657 GENBANK: KG964658 GENBANK: KG964659 GENBANK: KG964660 GENBANK: KG964661 GENBANK: KG964662 GENBANK: KG964663 GENBANK: KG964664 GENBANK: KG964665 GENBANK: KG964666 GENBANK: KG964667 GENBANK: KG964668 GENBANK: KG964669 GENBANK: KG964670 GENBANK: KG964671 GENBANK: KG964672 GENBANK: KG964673 GENBANK: KG964674 GENBANK: KG964675 GENBANK: KG964676 GENBANK: KG964677 GENBANK: KG964678 GENBANK: KG964679 GENBANK: KG964680 GENBANK: KG964681 GENBANK: KG964682 GENBANK: KG964683 GENBANK: KG964684 GENBANK: KG964685 GENBANK: KG964686 GENBANK: KG964687 GENBANK: KG964688 GENBANK: KG964689 GENBANK: KG964690 GENBANK: KG964691 GENBANK: KG964692 GENBANK: KG964693 GENBANK: KG964694 GENBANK: KG964695 GENBANK: KG964696 GENBANK: KG964697 GENBANK: KG964698 GENBANK: KG964699 GENBANK: KG964700 GENBANK: KG964701 GENBANK: KG964702 GENBANK: KG964703 GENBANK: KG964704 GENBANK: KG964705 GENBANK: KG964706 GENBANK: KG964707 GENBANK: KG964708 GENBANK: KG964709 GENBANK: KG964710 GENBANK: KG964711 GENBANK: KG964712 GENBANK: KG964713 GENBANK: KG964714 GENBANK: KG964715 GENBANK: KG964716 GENBANK: KG964717 GENBANK: KG964718 GENBANK: KG964719 GENBANK: KG964720 GENBANK: KG964721 GENBANK: KG964722 GENBANK: KG964723 GENBANK: KG964724 GENBANK: KG964725 GENBANK: KG964726 GENBANK: KG964727 GENBANK: KG964728 GENBANK: KG964729 GENBANK: KG964730 GENBANK: KG964731 GENBANK: KG964732 GENBANK: KG964733 GENBANK: KG964734 GENBANK: KG964735 GENBANK: KG964736 GENBANK: KG964737 GENBANK: KG964738 GENBANK: KG964739 GENBANK: KG964740 GENBANK: KG964741 GENBANK: KG964742 GENBANK: KG964743 GENBANK: KG964744 GENBANK: KG964745 GENBANK: KG964746 GENBANK: KG964747 GENBANK: KG964748 GENBANK: KG964749 GENBANK: KG964750 GENBANK: KG964751 GENBANK: KG964752 GENBANK: KG964753 GENBANK: KG964754 GENBANK: KG964755 GENBANK: KG964756 GENBANK: KG964757 GENBANK: KG964758 GENBANK: KG964759 GENBANK: KG964760 GENBANK: KG964761 GENBANK: KG964762 GENBANK: KG964763 GENBANK: KG964764 GENBANK: KG964765 GENBANK: KG964766 GENBANK: KG964767 GENBANK: KG964768 GENBANK: KG964769 GENBANK: KG964770 GENBANK: KG964771 GENBANK: KG964772 GENBANK: KG964773 GENBANK: KG964774 GENBANK: KG964775 GENBANK: KG964776 GENBANK: KG964777 GENBANK: KG964778 GENBANK: KG964779 GENBANK: KG964780 GENBANK: KG964781 GENBANK: KG964782 GENBANK: KG964783 GENBANK: KG964784 GENBANK: KG964785 GENBANK: KG964786 GENBANK: KG964787 GENBANK: KG964788 GENBANK: KG964789 GENBANK: KG964790 GENBANK: KG964791 GENBANK: KG964792 GENBANK: KG964793 GENBANK: KG964794 GENBANK: KG964795 GENBANK: KG964796 GENBANK: KG964797 GENBANK: KG964798 GENBANK: KG964799 GENBANK: KG964800 GENBANK: KG964801 GENBANK: KG964802 GENBANK: KG964803 GENBANK: KG964804 GENBANK: KG964805 GENBANK: KG964806 GENBANK: KG964807 GENBANK: KG964808 GENBANK: KG964809 GENBANK: KG964810 GENBANK: KG964811 GENBANK: KG964812 GENBANK: KG964813 GENBANK: KG964814 GENBANK: KG964815 GENBANK: KG964816 GENBANK: KG964817 GENBANK: KG964818 GENBANK: KG964819 GENBANK: KG964820 GENBANK: KG964821 GENBANK: KG964822 GENBANK: KG964823 GENBANK: KG964824 GENBANK: KG964825 GENBANK: KG964826 GENBANK: KG964827 GENBANK: KG964828 GENBANK: KG964829 GENBANK: KG964830 GENBANK: KG964831 GENBANK: KG964832 GENBANK: KG964833 GENBANK: KG964834 GENBANK: KG964835 GENBANK: KG964836 GENBANK: KG964837 GENBANK: KG964838 GENBANK: KG964839 GENBANK: KG964840 GENBANK: KG964841 GENBANK: KG964842 GENBANK: KG964843 GENBANK: KG964844 GENBANK: KG964845 GENBANK: KG964846 GENBANK: KG964847 GENBANK: KG964848 GENBANK: KG964849 GENBANK: KG964850 GENBANK: KG964851 GENBANK: KG964852 GENBANK: KG964853 GENBANK: KG964854 GENBANK: KG964855 GENBANK: KG964856 GENBANK: KG964857 GENBANK: KG964858 GENBANK: KG964859 GENBANK: KG964860 GENBANK: KG964861 GENBANK: KG964862 GENBANK: KG964863 GENBANK: KG964864 GENBANK: KG964865 GENBANK: KG964866 GENBANK: KG964867 GENBANK: KG964868 GENBANK: KG964869 GENBANK: KG964870 GENBANK: KG964871 GENBANK: KG964872 GENBANK: KG964873 GENBANK: KG964874 GENBANK: KG964875 GENBANK: KG964876 GENBANK: KG964877 GENBANK: KG964878 GENBANK: KG964879 GENBANK: KG964880 GENBANK: KG964881 GENBANK: KG964882 GENBANK: KG964883 GENBANK: KG964884 GENBANK: KG964885 GENBANK: KG964886 GENBANK: KG964887 GENBANK: KG964888 GENBANK: KG964889 GENBANK: KG964890 GENBANK: KG964891 GENBANK: KG964892 GENBANK: KG964893 GENBANK: KG964894 GENBANK: KG964895 GENBANK: KG964896 GENBANK: KG964897 GENBANK: KG964898 GENBANK: KG964899 GENBANK: KG964900 GENBANK: KG964901 GENBANK: KG964902 GENBANK: KG964903 GENBANK: KG964904 GENBANK: KG964905 GENBANK: KG964906 GENBANK: KG964907 GENBANK: KG964908 GENBANK: KG964909 GENBANK: KG964910 GENBANK: KG964911 GENBANK: KG964912 GENBANK: KG964913 GENBANK: KG964914 GENBANK: KG964915 GENBANK: KG964916 GENBANK: KG964917 GENBANK: KG964918 GENBANK: KG964919 GENBANK: KG964920 GENBANK: KG964921 GENBANK: KG964922 GENBANK: KG964923 GENBANK: KG964924 GENBANK: KG964925 GENBANK: KG964926 GENBANK: KG964927 GENBANK: KG964928 GENBANK: KG964929 GENBANK: KG964930 GENBANK: KG964931 GENBANK: KG964932 GENBANK: KG964933 GENBANK: KG964934 GENBANK: KG964935 GENBANK: KG964936 GENBANK: KG964937 GENBANK: KG964938 GENBANK: KG964939 GENBANK: KG964940 GENBANK: KG964941 GENBANK: KG964942 GENBANK: KG964943 GENBANK: KG964944 GENBANK: KG964945 GENBANK: KG964946 GENBANK: KG964947 GENBANK: KG964948 GENBANK: KG964949 GENBANK: KG964950 GENBANK: KG964951 GENBANK: KG964952 GENBANK: KG964953 GENBANK: KG964954 GENBANK: KG964955 GENBANK: KG964956 GENBANK: KG964957 GENBANK: KG964958 GENBANK: KG964959 GENBANK: KG964960 GENBANK: KG964961 GENBANK: KG964962 GENBANK: KG964963 GENBANK: KG964964 GENBANK: KG964965 GENBANK: KG964966 GENBANK: KG964967 GENBANK: KG964968 GENBANK: KG964969 GENBANK: KG964970 GENBANK: KG964971 GENBANK: KG964972 GENBANK: KG964973 GENBANK: KG964974 GENBANK: KG964975 GENBANK: KG964976 GENBANK: KG964977 GENBANK: KG964978 GENBANK: KG964979 GENBANK: KG964980 GENBANK: KG964981 GENBANK: KG964982 GENBANK: KG964983 GENBANK: KG964984 GENBANK: KG964985 GENBANK: KG964986 GENBANK: KG964987 GENBANK: KG964988 GENBANK: KG964989 GENBANK: KG964990 GENBANK: KG964991 GENBANK: KG964992 GENBANK: KG964993 GENBANK: KG964994 GENBANK: KG964995 GENBANK: KG964996 GENBANK: KG964997 GENBANK: KG964998 GENBANK: KG964999 GENBANK: KG965000 GENBANK: KG965001 GENBANK: KG965002 GENBANK: KG965003 GENBANK: KG965004 GENBANK: KG965005 GENBANK: KG965006 GENBANK: KG965007 GENBANK: KG965008 GENBANK: KG965009 GENBANK: KG965010 GENBANK: KG965011 GENBANK: KG965012 GENBANK: KG965013 GENBANK: KG965014 GENBANK: KG965015 GENBANK: KG965016 GENBANK: KG965017 GENBANK: KG965018 GENBANK: KG965019 GENBANK: KG965020 GENBANK: KG965021 GENBANK: KG965022 GENBANK: KG965023 GENBANK: KG965024 GENBANK: KG965025 GENBANK: KG965026 GENBANK: KG965027 GENBANK: KG965028 GENBANK: KG965029 GENBANK: KG965030 GENBANK: KG965031 GENBANK: KG965032 GENBANK: KG965033 GENBANK: KG965034 GENBANK: KG965035 GENBANK: KG965036 GENBANK: KG965037 GENBANK: KG965038 GENBANK: KG965039 GENBANK: KG965040 GENBANK: KG965041 GENBANK: KG965042 GENBANK: KG965043 GENBANK: KG965044 GENBANK: KG965045 GENBANK: KG965046 GENBANK: KG965047 GENBANK: KG965048 GENBANK: KG965049 GENBANK: KG965050 GENBANK: KG965051 GENBANK: KG965052 GENBANK: KG965053 GENBANK: KG965054 GENBANK: KG965055 GENBANK: KG965056 GENBANK: KG965057 GENBANK: KG965058 GENBANK: KG965059 GENBANK: KG965060 GENBANK: KG965061 GENBANK: KG965062 GENBANK: KG965063 GENBANK: KG965064 GENBANK: KG965065 GENBANK: KG965066 GENBANK: KG965067 GENBANK: KG965068 GENBANK: KG965069 GENBANK: KG965070 GENBANK: KG965071 GENBANK: KG965072 GENBANK: KG965073 GENBANK: KG965074 GENBANK: KG965075 GENBANK: KG965076 GENBANK: KG965077 GENBANK: KG965078 GENBANK: KG965079 GENBANK: KG965080 GENBANK: KG965081 GENBANK: KG965082 GENBANK: KG965083 GENBANK: KG965084 GENBANK: KG965085 GENBANK: KG965086 GENBANK: KG965087 GENBANK: KG965088 GENBANK: KG965089 GENBANK: KG965090 GENBANK: KG965091 GENBANK: KG965092 GENBANK: KG965093 GENBANK: KG965094 GENBANK: KG965095 GENBANK: KG965096 GENBANK: KG965097 GENBANK: KG965098 GENBANK: KG965099 GENBANK: KG965100 GENBANK: KG965101 GENBANK: KG965102 GENBANK: KG965103 GENBANK: KG965104 GENBANK: KG965105 GENBANK: KG965106 GENBANK: KG965107 GENBANK: KG965108 GENBANK: KG965109 GENBANK: KG965110 GENBANK: KG965111 GENBANK: KG965112 GENBANK: KG965113 GENBANK: KG965114 GENBANK: KG965115 GENBANK: KG965116 GENBANK: KG965117 GENBANK: KG965118 GENBANK: KG965119 GENBANK: KG965120 GENBANK: KG965121 GENBANK: KG965122 GENBANK: KG965123 GENBANK: KG965124 GENBANK: KG965125 GENBANK: KG965126 GENBANK: KG965127 GENBANK: KG965128 GENBANK: KG965129 GENBANK: KG965130 GENBANK: KG965131 GENBANK: KG965132 GENBANK: KG965133 GENBANK: KG965134 GENBANK: KG965135 GENBANK: KG965136 GENBANK: KG965137 GENBANK: KG965138 GENBANK: KG965139 GENBANK: KG965140 GENBANK: KG965141 GENBANK: KG965142 GENBANK: KG965143 GENBANK: KG965144 GENBANK: KG965145 GENBANK: KG965146 GENBANK: KG965147 GENBANK: KG965148 GENBANK: KG965149 GENBANK: KG965150 GENBANK: KG965151 GENBANK: KG965152 GENBANK: KG965153 GENBANK: KG965154 GENBANK: KG965155 GENBANK: KG965156 GENBANK: KG965157 GENBANK: KG965158 GENBANK: KG965159 GENBANK: KG965160 GENBANK: KG965161 GENBANK: KG965162 GENBANK: KG965163 GENBANK: KG965164 GENBANK: KG965165 GENBANK: KG965166 GENBANK: KG965167 GENBANK: KG965168 GENBANK: KG965169 GENBANK: KG965170 GENBANK: KG965171 GENBANK: KG965172 GENBANK: KG965173 GENBANK: KG965174 GENBANK: KG965175 GENBANK: KG965176 GENBANK: KG965177 GENBANK: KG965178 GENBANK: KG965179 GENBANK: KG965180 GENBANK: KG965181 GENBANK: KG965182 GENBANK: KG965183 GENBANK: KG965184 GENBANK: KG965185 GENBANK: KG965186 GENBANK: KG965187 GENBANK: KG965188 GENBANK: KG965189 GENBANK: KG965190 GENBANK: KG965191 GENBANK: KG965192 GENBANK: KG965193 GENBANK: KG965194 GENBANK: KG965195 GENBANK: KG965196 GENBANK: KG965197 GENBANK: KG965198 GENBANK: KG965199 GENBANK: KG965200 GENBANK: KG965201 GENBANK: KG965202 GENBANK: KG965203 GENBANK: KG965204 GENBANK: KG965205 GENBANK: KG965206 GENBANK: KG965207 GENBANK: KG965208 GENBANK: KG965209 GENBANK: KG965210 GENBANK: KG965211 GENBANK: KG965212 GENBANK: KG965213 GENBANK: KG965214 GENBANK: KG965215 GENBANK: KG965216 GENBANK: KG965217 GENBANK: KG965218 GENBANK: KG965219 GENBANK: KG965220 GENBANK: KG965221 GENBANK: KG965222 GENBANK: KG965223 GENBANK: KG965224 GENBANK: KG965225 GENBANK: KG965226 GENBANK: KG965227 GENBANK: KG965228 GENBANK: KG965229 GENBANK: KG965230 GENBANK: KG965231 GENBANK: KG965232 GENBANK: KG965233 GENBANK: KG965234 GENBANK: KG965235 GENBANK: KG965236 GENBANK: KG965237 GENBANK: KG965238 GENBANK: KG965239 GENBANK: KG965240 GENBANK: KG965241 GENBANK: KG965242 GENBANK: KG965243 GENBANK: KG965244 GENBANK: KG965245 GENBANK: KG965246 GENBANK: KG965247 GENBANK: KG965248 GENBANK: KG965249 GENBANK: KG965250 GENBANK: KG965251 GENBANK: KG965252 GENBANK: KG965253 GENBANK: KG965254 GENBANK: KG965255 GENBANK: KG965256 GENBANK: KG965257 GENBANK: KG965258 GENBANK: KG965259 GENBANK: KG965260 GENBANK: KG965261 GENBANK: KG965262 GENBANK: KG965263 GENBANK: KG965264 GENBANK: KG965265 GENBANK: KG965266 GENBANK: KG965267 GENBANK: KG965268 GENBANK: KG965269 GENBANK: KG965270 GENBANK: KG965271 GENBANK: KG965272 GENBANK: KG965273 GENBANK: KG965274 GENBANK: KG965275 GENBANK: KG965276 GENBANK: KG965277 GENBANK: KG965278 GENBANK: KG965279 GENBANK: KG965280 GENBANK: KG965281 GENBANK: KG965282 GENBANK: KG965283 GENBANK: KG965284 GENBANK: KG965285 GENBANK: KG965286 GENBANK: KG965287 GENBANK: KG965288 GENBANK: KG965289 GENBANK: KG965290 GENBANK: KG965291 GENBANK: KG965292 GENBANK: KG965293 GENBANK: KG965294 GENBANK: KG965295 GENBANK: KG965296 GENBANK: KG965297 GENBANK: KG965298 GENBANK: KG965299 GENBANK: KG965300 GENBANK: KG965301 GENBANK: KG965302 GENBANK: KG965303 GENBANK: KG965304 GENBANK: KG965305 GENBANK: KG965306 GENBANK: KG965307 GENBANK: KG965308 GENBANK: KG965309 GENBANK: KG965310 GENBANK: KG965311 GENBANK: KG965312 GENBANK: KG965313 GENBANK: KG965314 GENBANK: KG965315 GENBANK: KG965316 GENBANK: KG965317 GENBANK: KG965318 GENBANK: KG965319 GENBANK: KG965320 GENBANK: KG965321 GENBANK: KG965322 GENBANK: KG965323 GENBANK: KG965324 GENBANK: KG965325 GENBANK: KG965326 GENBANK: KG965327 GENBANK: KG965328 GENBANK: KG965329 GENBANK: KG965330 GENBANK: KG965331 GENBANK: KG965332 GENBANK: KG965333 GENBANK: KG965334 GENBANK: KG965335 GENBANK: KG965336 GENBANK: KG965337 GENBANK: KG965338 GENBANK: KG965339 GENBANK: KG965340 GENBANK: KG965341 GENBANK: KG965342 GENBANK: KG965343 GENBANK: KG965344 GENBANK: KG965345 GENBANK: KG965346 GENBANK: KG965347 GENBANK: KG965348 GENBANK: KG965349 GENBANK: KG965350 GENBANK: KG965351 GENBANK: KG965352 GENBANK: KG965353 GENBANK: KG965354 GENBANK: KG965355 GENBANK: KG965356 GENBANK: KG965357 GENBANK: KG965358 GENBANK: KG965359 GENBANK: KG965360 GENBANK: KG965361 GENBANK: KG965362 GENBANK: KG965363 GENBANK: KG965364 GENBANK: KG965365 GENBANK: KG965366 GENBANK: KG965367 GENBANK: KG965368 GENBANK: KG965369 GENBANK: KG965370 GENBANK: KG965371 GENBANK: KG965372 GENBANK: KG965373 GENBANK: KG965374 GENBANK: KG965375 GENBANK: KG965376 GENBANK: KG965377 GENBANK: KG965378 GENBANK: KG965379 GENBANK: KG965380 GENBANK: KG965381 GENBANK: KG965382 GENBANK: KG965383 GENBANK: KG965384 GENBANK: KG965385 GENBANK: KG965386 GENBANK: KG965387 GENBANK: KG965388 GENBANK: KG965389 GENBANK: KG965390 GENBANK: KG965391 GENBANK: KG965392 GENBANK: KG965393 GENBANK: KG965394 GENBANK: KG965395 GENBANK: KG965396 GENBANK: KG965397 GENBANK: KG965398 GENBANK: KG965399 GENBANK: KG965400 GENBANK: KG965401 GENBANK: KG965402 GENBANK: KG965403 GENBANK: KG965404 GENBANK: KG965405 GENBANK: KG965406 GENBANK: KG965407 GENBANK: KG965408 GENBANK: KG965409 GENBANK: KG965410 GENBANK: KG965411 GENBANK: KG965412 GENBANK: KG965413 GENBANK: KG965414 GENBANK: KG965415 GENBANK: KG965416 GENBANK: KG965417 GENBANK: KG965418 GENBANK: KG965419 GENBANK: KG965420 GENBANK: KG965421 GENBANK: KG965422 GENBANK: KG965423 GENBANK: KG965424 GENBANK: KG965425 GENBANK: KG965426 GENBANK: KG965427 GENBANK: KG965428 GENBANK: KG965429 GENBANK: KG965430 GENBANK: KG965431 GENBANK: KG965432 GENBANK: KG965433 GENBANK: KG965434 GENBANK: KG965435 GENBANK: KG965436 GENBANK: KG965437 GENBANK: KG965438 GENBANK: KG965439 GENBANK: KG965440 GENBANK: KG965441 GENBANK: KG965442 GENBANK: KG965443 GENBANK: KG965444 GENBANK: KG965445 GENBANK: KG965446 GENBANK: KG965447 GENBANK: KG965448 GENBANK: KG965449 GENBANK: KG965450 GENBANK: KG965451 GENBANK: KG965452 GENBANK: KG965453 GENBANK: KG965454 GENBANK: KG965455 GENBANK: KG965456 GENBANK: KG965457 GENBANK: KG965458 GENBANK: KG965459 GENBANK: KG965460 GENBANK: KG965461 GENBANK: KG965462 GENBANK: KG965463 GENBANK: KG965464 GENBANK: KG965465 GENBANK: KG965466 GENBANK: KG965467 GENBANK: KG965468 GENBANK: KG965469 GENBANK: KG965470 GENBANK: KG965471 GENBANK: KG965472 GENBANK: KG965473 GENBANK: KG965474 GENBANK: KG965475 GENBANK: KG965476 GENBANK: KG965477 GENBANK: KG965478 GENBANK: KG965479 GENBANK: KG965480 GENBANK: KG965481 GENBANK: KG965482 GENBANK: KG965483 GENBANK: KG965484 GENBANK: KG965485 GENBANK: KG965486 GENBANK: KG965487 GENBANK: KG965488 GENBANK: KG965489 GENBANK: KG965490 GENBANK: KG965491 GENBANK: KG965492 GENBANK: KG965493 GENBANK: KG965494 GENBANK: KG965495 GENBANK: KG965496 GENBANK: KG965497 GENBANK: KG965498 GENBANK: KG965499 GENBANK: KG965500 GENBANK: KG965501 GENBANK: KG965502 GENBANK: KG965503 GENBANK: KG965504 GENBANK: KG965505 GENBANK: KG965506 GENBANK: KG965507 GENBANK: KG965508 GENBANK: KG965509 GENBANK: KG965510 GENBANK: KG965511 GENBANK: KG965512 GENBANK: KG965513 GENBANK: KG965514 GENBANK: KG965515 GENBANK: KG965516 GENBANK: KG965517 GENBANK: KG965518 GENBANK: KG965519 GENBANK: KG965520 GENBANK: KG965521 GENBANK: KG965522 GENBANK: KG965523 GENBANK: KG965524 GENBANK: KG965525 GENBANK: KG965526 GENBANK: KG965527 GENBANK: KG965528 GENBANK: KG965529 GENBANK: KG965530 GENBANK: KG965531 GENBANK: KG965532 GENBANK: KG965533 GENBANK: KG965534 GENBANK: KG965535 GENBANK: KG965536 GENBANK: KG965537 GENBANK: KG965538 GENBANK: KG965539 GENBANK: KG965540 GENBANK: KG965541 GENBANK: KG965542 GENBANK: KG965543 GENBANK: KG965544 GENBANK: KG965545 GENBANK: KG965546 GENBANK: KG965547 GENBANK: KG965548 GENBANK: KG965549 GENBANK: KG965550 GENBANK: KG965551 GENBANK: KG965552 GENBANK: KG965553 GENBANK: KG965554 GENBANK: KG965555 GENBANK: KG965556 GENBANK: KG965557 GENBANK: KG965558 GENBANK: KG965559 GENBANK: KG965560 GENBANK: KG965561 GENBANK: KG965562 GENBANK: KG965563 GENBANK: KG965564 GENBANK: KG965565 GENBANK: KG965566 GENBANK: KG965567 GENBANK: KG965568 GENBANK: KG965569 GENBANK: KG965570 GENBANK: KG965571 GENBANK: KG965572 GENBANK: KG965573 GENBANK: KG965574 GENBANK: KG965575 GENBANK: KG965576 GENBANK: KG965577 GENBANK: KG965578 GENBANK: KG965579 GENBANK: KG965580 GENBANK: KG965581 GENBANK: KG965582 GENBANK: KG965583 GENBANK: KG965584 GENBANK: KG965585 GENBANK: KG965586 GENBANK: KG965587 GENBANK: KG965588 GENBANK: KG965589 GENBANK: KG965590 GENBANK: KG965591 GENBANK: KG965592 GENBANK: KG965593 GENBANK: KG965594 GENBANK: KG965595 GENBANK: KG965596 GENBANK: KG965597 GENBANK: KG965598 GENBANK: KG965599 GENBANK: KG965600 GENBANK: KG965601 GENBANK: KG965602 GENBANK: KG965603 GENBANK: KG965604 GENBANK: KG965605 GENBANK: KG965606 GENBANK: KG965607 GENBANK: KG965608 GENBANK: KG965609 GENBANK: KG965610 GENBANK: KG965611 GENBANK: KG965612 GENBANK: KG965613 GENBANK: KG965614 GENBANK: KG965615 GENBANK: KG965616 GENBANK: KG965617 GENBANK: KG965618 GENBANK: KG965619 GENBANK: KG965620 GENBANK: KG965621 GENBANK: KG965622 GENBANK: KG965623 GENBANK: KG965624 GENBANK: KG965625 GENBANK: KG965626 GENBANK: KG965627 GENBANK: KG965628 GENBANK: KG965629 GENBANK: KG965630 GENBANK: KG965631 GENBANK: KG965632 GENBANK: KG965633 GENBANK: KG965634 GENBANK: KG965635 GENBANK: KG965636 GENBANK: KG965637 GENBANK: KG965638 GENBANK: KG965639 GENBANK: KG965640 GENBANK: KG965641 GENBANK: KG965642 GENBANK: KG965643 GENBANK: KG965644 GENBANK: KG965645 GENBANK: KG965646 GENBANK: KG965647 GENBANK: KG965648 GENBANK: KG965649 GENBANK: KG965650 GENBANK: KG965651 GENBANK: KG965652 GENBANK: KG965653 GENBANK: KG965654 GENBANK: KG965655 GENBANK: KG965656 GENBANK: KG965657 GENBANK: KG965658 GENBANK: KG965659 GENBANK: KG965660 GENBANK: KG965661 GENBANK: KG965662 GENBANK: KG965663 GENBANK: KG965664 GENBANK: KG965665 GENBANK: KG965666 GENBANK: KG965667 GENBANK: KG965668 GENBANK: KG965669 GENBANK: KG965670 GENBANK: KG965671 GENBANK: KG965672 GENBANK: KG965673 GENBANK: KG965674 GENBANK: KG965675 GENBANK: KG965676 GENBANK: KG965677 GENBANK: KG965678 GENBANK: KG965679 GENBANK: KG965680 GENBANK: KG965681 GENBANK: KG965682 GENBANK: KG965683 GENBANK: KG965684 GENBANK: KG965685 GENBANK: KG965686 GENBANK: KG965687 GENBANK: KG965688 GENBANK: KG965689 GENBANK: KG965690 GENBANK: KG965691 GENBANK: KG965692 GENBANK: KG965693 GENBANK: KG965694 GENBANK: KG965695 GENBANK: KG965696 GENBANK: KG965697 GENBANK: KG965698 GENBANK: KG965699 GENBANK: KG965700 GENBANK: KG965701 GENBANK: KG965702 GENBANK: KG965703 GENBANK: KG965704 GENBANK: KG965705 GENBANK: KG965706 GENBANK: KG965707 GENBANK: KG965708 GENBANK: KG965709 GENBANK: KG965710 GENBANK: KG965711 GENBANK: KG965712 GENBANK: KG965713 GENBANK: KG965714 GENBANK: KG965715 GENBANK: KG965716 GENBANK: KG965717 GENBANK: KG965718 GENBANK: KG965719 GENBANK: KG965720 GENBANK: KG965721 GENBANK: KG965722 GENBANK: KG965723 GENBANK: KG965724 GENBANK: KG965725 GENBANK: KG965726 GENBANK: KG965727 GENBANK: KG965728 GENBANK: KG965729 GENBANK: KG965730 GENBANK: KG965731 GENBANK: KG965732 GENBANK: KG965733 GENBANK: KG965734 GENBANK: KG965735 GENBANK: KG965736 GENBANK: KG965737 GENBANK: KG965738 GENBANK: KG965739 GENBANK: KG965740 GENBANK: KG965741 GENBANK: KG965742 GENBANK: KG965743 GENBANK: KG965744 GENBANK: KG965745 GENBANK: KG965746 GENBANK: KG965747 GENBANK: KG965748 GENBANK: KG965749 GENBANK: KG965750 GENBANK: KG965751 GENBANK: KG965752 GENBANK: KG965753 GENBANK: KG965754 GENBANK: KG965755 GENBANK: KG965756 GENBANK: KG965757 GENBANK: KG965758 GENBANK: KG965759 GENBANK: KG965760 GENBANK: KG965761 GENBANK: KG965762 GENBANK: KG965763 GENBANK: KG965764 GENBANK: KG965765 GENBANK: KG965766 GENBANK: KG965767 GENBANK: KG965768 GENBANK: KG965769 GENBANK: KG965770 GENBANK: KG965771 GENBANK: KG965772 GENBANK: KG965773 GENBANK: KG965774 GENBANK: KG965775 GENBANK: KG965776 GENBANK: KG965777 GENBANK: KG965778 GENBANK: KG965779 GENBANK: KG965780 GENBANK: KG965781 GENBANK: KG965782 GENBANK: KG965783 GENBANK: KG965784 GENBANK: KG965785 GENBANK: KG965786 GENBANK: KG965787 GENBANK: KG965788 GENBANK: KG965789 GENBANK: KG965790 GENBANK: KG965791 GENBANK: KG965792 GENBANK: KG965793 GENBANK: KG965794 GENBANK: KG965795 GENBANK: KG965796 GENBANK: KG965797 GENBANK: KG965798 GENBANK: KG965799 GENBANK: KG965800 GENBANK: KG965801 GENBANK: KG965802 GENBANK: KG965803 GENBANK: KG965804 GENBANK: KG965805 GENBANK: KG965806 GENBANK: KG965807 GENBANK: KG965808 GENBANK: KG965809 GENBANK: KG965810 GENBANK: KG965811 GENBANK: KG965812 GENBANK: KG965813 GENBANK: KG965814 GENBANK: KG965815 GENBANK: KG965816 GENBANK: KG965817 GENBANK: KG965818 GENBANK: KG965819 GENBANK: KG965820 GENBANK: KG965821 GENBANK: KG965822 GENBANK: KG965823 GENBANK: KG965824 GENBANK: KG965825 GENBANK: KG965826 GENBANK: KG965827 GENBANK: KG965828 GENBANK: KG965829 GENBANK: KG965830 GENBANK: KG965831 GENBANK: KG965832 GENBANK: KG965833 GENBANK: KG965834 GENBANK: KG965835 GENBANK: KG965836 GENBANK: KG965837 GENBANK: KG965838

Bioinformatics Support, Infrastructure and Training

483 publications

Year 2021

Year 2020

Year 2019

Year 2018

Year 2017

Year 2016