Elife

ISSN	2050-084X
ISSN-L	2050-084X
IUID	0635ecd364f54759a5e3ed9de8e490ab
Modified	2020-11-27T13:14:08.892Z
Created	2017-05-09T09:12:21.685Z

PubMed DOI Crossref

Merging multi-omics with proteome integral solubility alteration unveils antibiotic mode of action.

Maity R, Zhang X, Liberati FR, ..., Aínsa JA, Sancho J

Elife 13 (-) - [2024-09-27; online 2024-09-27]

Chemical Proteomics [Collaborative]

PubMed DOI Crossref

PITAR, a DNA damage-inducible cancer/testis long noncoding RNA, inactivates p53 by binding and stabilizing TRIM28 mRNA.

Jana S, Mondal M, Mahale S, ..., Kanduri C, Somasundaram K

Elife 12 (-) - [2024-09-20; online 2024-09-20]

Integrated Microscopy Technologies Gothenburg [Service]

DOI Crossref

Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding

Bimai O, Banerjee I, Rozman Grinberg I, ..., Sjöberg BM, Logan DT

Elife 12 (-) - [2024-07-05; online 2024-07-05]

Cryo-EM [Service] Structural Proteomics [Service]

PubMed DOI Crossref

Transcriptomic atlas of midbrain dopamine neurons uncovers differential vulnerability in a Parkinsonism lesion model.

Yaghmaeian Salmani B, Lahti L, Gillberg L, ..., Svenningsson P, Perlmann T

Elife 12 (-) - [2024-04-08; online 2024-04-08]

Bioinformatics Support for Computational Resources [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Discovery of lipid binding sites in a ligand-gated ion channel by integrating simulations and cryo-EM

Bergh C, Rovšnik U, Howard R, Lindahl E

Elife 12 (-) - [2024-01-30; online 2024-01-30]

Cryo-EM [Service]

PubMed DOI Crossref

Separating phases of allopolyploid evolution with resynthesized and natural Capsella bursa-pastoris.

Duan T, Sicard A, Glémin S, Lascoux M

Elife 12 (-) - [2024-01-08; online 2024-01-08]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Proteomic analysis shows decreased type I fibers and ectopic fat accumulation in skeletal muscle from women with PCOS.

Stener-Victorin E, Eriksson G, Mohan Shrestha M, ..., Lanner J, Benrick A

Elife 12 (-) - [2024-01-05; online 2024-01-05]

Glycoproteomics and MS Proteomics [Service]

PubMed DOI Crossref

Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse.

Kurt Z, Cheng J, Barrere-Cain R, ..., Blencowe M, Yang X

Elife 12 (-) - [2023-12-07; online 2023-12-07]

NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Structural foundation for the role of enterococcal PrgB in conjugation, biofilm formation, and virulence.

Sun WS, Lassinantti L, Järvå M, ..., Ter Beek J, Berntsson RP

Elife 12 (-) - [2023-10-20; online 2023-10-20]

Cryo-EM [Service]

PubMed DOI Crossref

Megafaunal extinctions, not climate change, may explain Holocene genetic diversity declines in Numenius shorebirds.

Tan HZ, Jansen JJFJ, Allport GA, ..., Gwee CY, Rheindt FE

Elife 12 (-) - [2023-08-07; online 2023-08-07]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations.

Lauterbur ME, Cavassim MIA, Gladstein AL, ..., Schrider DR, Gronau I

Elife 12 (-) - [2023-06-21; online 2023-06-21]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Identification of phenotypically, functionally, and anatomically distinct stromal niche populations in human bone marrow based on single-cell RNA sequencing.

Li H, Bräunig S, Dhapolar P, ..., Lang S, Scheding S

Elife 12 (-) - [2023-03-06; online 2023-03-06]

Clinical Genomics [Service] Clinical Genomics Lund [Service]

PubMed DOI Crossref

A novel cis-regulatory element drives early expression of Nkx3.2 in the gnathostome primary jaw joint.

Leyhr J, Waldmann L, Filipek-Górniok B, ..., Allalou A, Haitina T

Elife 11 (-) - [2022-11-15; online 2022-11-15]

BioImage Informatics [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Architecture of the chikungunya virus replication organelle.

Laurent T, Kumar P, Liese S, ..., Carlson A, Carlson LA

Elife 11 (-) - [2022-10-19; online 2022-10-19]

Cryo-EM [Service]

PubMed DOI Crossref

Claudin5 protects the peripheral endothelial barrier in an organ and vessel-type-specific manner.

Richards M, Nwadozi E, Pal S, ..., Nordling S, Claesson-Welsh L

Elife 11 (-) - [2022-07-21; online 2022-07-21]

Bioinformatics Support for Computational Resources [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genetically controlled mtDNA deletions prevent ROS damage by arresting oxidative phosphorylation.

Stenberg S, Li J, Gjuvsland AB, ..., Omholt SW, Warringer J

Elife 11 (-) - [2022-07-08; online 2022-07-08]

Integrated Microscopy Technologies Gothenburg [Service]

PubMed DOI Crossref

A novel immunopeptidomic-based pipeline for the generation of personalized oncolytic cancer vaccines.

Feola S, Chiaro J, Martins B, ..., Lehtiö J, Cerullo V

Elife 11 (-) - [2022-03-22; online 2022-03-22]

Global Proteomics and Proteogenomics [Technology development]

PubMed DOI Crossref

Protein-lipid interaction at low pH induces oligomerization of the MakA cytotoxin from Vibrio cholerae.

Nadeem A, Berg A, Pace H, ..., Uhlin BE, Wai SN

Elife 11 (-) - [2022-02-08; online 2022-02-08]

Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service] Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the lamprey central canal.

Jalalvand E, Alvelid J, Coceano G, ..., Grillner S, Testa I

Elife 11 (-) - [2022-02-01; online 2022-02-01]

Integrated Microscopy Technologies Stockholm [Technology development]

PubMed DOI Crossref

Structure and ion-release mechanism of PIB-4-type ATPases.

Grønberg C, Hu Q, Mahato DR, ..., Wang K, Gourdon P

Elife 10 (-) - [2021-12-24; online 2021-12-24]

Chemical Biology Consortium Sweden (CBCS) [Collaborative]

PubMed DOI Crossref

Rapid genome editing by CRISPR-Cas9-POLD3 fusion

Reint G, Li Z, Labun K, ..., Taipale J, Haapaniemi E

Elife 10 (-) - [2021-12-13; online 2021-12-13] Open Access

CRISPR Functional Genomics [Collaborative]

PubMed DOI Crossref

The Lon protease temporally restricts polar cell differentiation events during the Caulobacter cell cycle.

Omnus DJ, Fink MJ, Szwedo K, Jonas K

Elife 10 (-) - [2021-10-25; online 2021-10-25]

Global Proteomics and Proteogenomics [Service]

PubMed DOI Crossref

Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome.

Bacic L, Gaullier G, Sabantsev A, ..., Boulton SJ, Deindl S

Elife 10 (-) - [2021-09-06; online 2021-09-06]

Cryo-EM [Service]

PubMed DOI Crossref

Single-cell analysis of mosquito hemocytes identifies signatures of immune cell subtypes and cell differentiation.

Kwon H, Mohammed M, Franzén O, Ankarklev J, Smith RC

Elife 10 (-) - [2021-07-28; online 2021-07-28]

Bioinformatics Support for Computational Resources [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] Microbial Single Cell Genomics NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial.

Chantzichristos D, Svensson PA, Garner T, ..., Stevens A, Johannsson G

Elife 10 (-) - [2021-04-06; online 2021-04-06]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast.

Yu R, Vorontsov E, Sihlbom C, Nielsen J

Elife 10 (-) - [2021-03-15; online 2021-03-15]

Glycoproteomics and MS Proteomics [Collaborative]

PubMed DOI Crossref

Telomeric double-strand DNA-binding proteins DTN-1 and DTN-2 ensure germline immortality in Caenorhabditis elegans.

Yamamoto I, Zhang K, Zhang J, Vorontsov E, Shibuya H

Elife 10 (-) - [2021-01-21; online 2021-01-21]

Glycoproteomics and MS Proteomics [Service]

PubMed DOI Crossref

Structural basis of mitochondrial translation

Aibara S, Singh V, Modelska A, Amunts A

Elife 9 (-) 1-17 [2020-08-19; online 2020-08-19]

Cryo-EM [Service] Global Proteomics and Proteogenomics [Service]

PubMed DOI Crossref

Heterogeneous somatostatin-expressing neuron population in mouse ventral tegmental area.

Nagaeva E, Zubarev I, Bengtsson Gonzales C, ..., Augustine GJ, Korpi ER

Elife 9 (-) - [2020-08-04; online 2020-08-04]

Eukaryotic Single Cell Genomics (ESCG) [Service]

PubMed DOI Crossref

Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.

Tobiasson V, Amunts A

Elife 9 (-) 1-15 [2020-06-18; online 2020-06-18]

Cryo-EM [Service] Global Proteomics and Proteogenomics [Service]

PubMed DOI Crossref

Lipid accumulation controls the balance between surface connection and scission of caveolae.

Hubert M, Larsson E, Vegesna NVG, ..., Moodie LW, Lundmark R

Elife 9 (-) - [2020-05-04; online 2020-05-04]

Integrated Microscopy Technologies Umeå [Collaborative] Swedish Metabolomics Centre (SMC) [Collaborative]

PubMed DOI Crossref

Longitudinal trajectories, correlations and mortality associations of nine biological ages across 20-years follow-up.

Li X, Ploner A, Wang Y, ..., Jylhävä J, Hägg S

Elife 9 (-) - [2020-02-11; online 2020-02-11]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Loss of centromere function drives karyotype evolution in closely related Malassezia species.

Sankaranarayanan SR, Ianiri G, Coelho MA, ..., Heitman J, Sanyal K

Elife 9 (-) - [2020-01-20; online 2020-01-20]

NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons.

Batista RA, Moreno-Romero J, Qiu Y, ..., Figueiredo DD, Köhler C

Elife 8 (-) - [2019-12-02; online 2019-12-02]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Structure of a mitochondrial ATP synthase with bound native cardiolipin.

Mühleip A, McComas SE, Amunts A

Elife 8 (-) - [2019-11-18; online 2019-11-18]

Cryo-EM [Service] Global Proteomics and Proteogenomics [Service]

PubMed DOI Crossref

Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1.

Masser AE, Kang W, Roy J, ..., Friedländer MR, Andréasson C

Elife 8 (-) - [2019-09-25; online 2019-09-25]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Electron cryo-microscopy of bacteriophage PR772 reveals the elusive vertex complex and the capsid architecture.

Reddy HK, Carroni M, Hajdu J, Svenda M

Elife 8 (-) - [2019-09-12; online 2019-09-12]

Cryo-EM [Service]

PubMed DOI Crossref

Combinations of Spok genes create multiple meiotic drivers in Podospora.

Vogan AA, Ament-Velásquez SL, Granger-Farbos A, ..., Saupe SJ, Johannesson H

Elife 8 (-) - [2019-07-26; online 2019-07-26]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comment on 'AIRE-deficient patients harbor unique high-affinity disease-ameliorating autoantibodies'.

Landegren N, Rosen LB, Freyhult E, ..., Anderson M, Kämpe O

Elife 8 (-) - [2019-06-27; online 2019-06-27]

Autoimmunity and Serology Profiling [Service] Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Membrane fluidity is regulated by the C. elegans transmembrane protein FLD-1 and its human homologs TLCD1/2.

Ruiz M, Bodhicharla R, Svensk E, ..., Boren J, Pilon M

Elife 7 (-) - [2018-12-04; online 2018-12-04]

Integrated Microscopy Technologies Gothenburg [Service]

PubMed DOI Crossref

The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding.

Kudva R, Tian P, Pardo-Avila F, ..., Bernstein HD, von Heijne G

Elife 7 (-) - [2018-11-26; online 2018-11-26]

Cryo-EM [Service]

PubMed DOI Crossref

New tools for automated high-resolution cryo-EM structure determination in RELION-3

Zivanov J, Nakane T, Forsberg BO, ..., Lindahl E, Scheres SH

Elife 7 (-) - [2018-11-09; online 2018-11-09]

Cryo-EM [Technology development]

PubMed DOI Crossref

Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima.

Morgunova E, Yin Y, Das PK, ..., Nilsson L, Taipale J

Elife 7 (-) - [2018-04-11; online 2018-04-11]

Bioinformatics Support for Computational Resources [Service] Protein Science Facility (PSF) [Service]

PubMed DOI Crossref

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit.

Rozman Grinberg I, Lundin D, Hasan M, ..., Logan DT, Sjöberg BM

Elife 7 (-) - [2018-02-01; online 2018-02-01]

Protein Science Facility (PSF) [Service]

PubMed DOI Crossref

Regulatory coiled-coil domains promote head-to-head assemblies of AAA+ chaperones essential for tunable activity control.

Carroni M, Franke KB, Maurer M, ..., Bukau B, Mogk A

Elife 6 (-) - [2017-11-22; online 2017-11-22]

Cryo-EM [Collaborative]

PubMed DOI Crossref

Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS.

Ly T, Whigham A, Clarke R, ..., Wadsworth P, Lamond AI

Elife 6 (-) - [2017-10-20; online 2017-10-20]

Spatial Proteomics [Collaborative]

PubMed DOI Crossref

Major transcriptional changes observed in the Fulani, an ethnic group less susceptible to malaria.

Quin JE, Bujila I, Chérif M, ..., Nebie I, Östlund Farrants AK

Elife 6 (-) - [2017-09-19; online 2017-09-19]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate

Feng C, Pettersson M, Lamichhaney S, ..., Folkvord A, Andersson L

Elife 6 (-) - [2017-06-30; online 2017-06-30]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Reproducible diagnostic metabolites in plasma from typhoid fever patients in Asia and Africa

Näsström E, Parry CM, Vu Thieu NT, ..., Antti H, Baker S

Elife 6 (-) - [2017-05-09; online 2017-05-09]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

PDE2A2 regulates mitochondria morphology and apoptotic cell death via local modulation of cAMP/PKA signalling.

Monterisi S, Lobo MJ, Livie C, ..., Micaroni M, Zaccolo M

Elife 6 (-) - [2017-05-02; online 2017-05-02]

Integrated Microscopy Technologies Gothenburg [Service]

PubMed DOI Crossref

Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage

Kaucka M, Zikmund T, Tesarova M, ..., Fried K, Adameyko I

Elife 6 (-) - [2017-04-17; online 2017-04-17]

Integrated Microscopy Technologies Stockholm [Collaborative]

PubMed DOI Crossref

Atrophin controls developmental signaling pathways via interactions with Trithorax-like

Yeung K, Boija A, Karlsson E, ..., Mannervik M, McNeill H

Elife 6 (-) - [2017-03-22; online 2017-03-22]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.

Martinez Barrio A, Lamichhaney S, Fan G, ..., Xu X, Andersson L

Elife 5 (-) - [2016-05-03; online 2016-05-03]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Paternally expressed imprinted genes establish postzygotic hybridization barriers in Arabidopsis thaliana.

Wolff P, Jiang H, Wang G, Santos-González J, Köhler C

Elife 4 (-) - [2015-09-07; online 2015-09-07]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution.

Nitta KR, Jolma A, Yin Y, ..., Furlong EE, Taipale J

Elife 4 (-) - [2015-03-17; online 2015-03-17]

Karolinska High Throughput Center (KHTC)

Elife

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