Nat Protoc

Measuring plasma membrane fluidity using confocal microscopy.

Carravilla P, Andronico L, Schlegel J, ..., Lorent J, Sezgin E

Nat Protoc - (-) - [2025-02-19; online 2025-02-19]

Integrated Microscopy Technologies Stockholm [Service]

Multiplexed chromatin immunoprecipitation sequencing for quantitative study of histone modifications and chromatin factors.

Kumar B, Navarro C, Yung PYK, ..., Martin M, Elsässer SJ

Nat Protoc - (-) - [2024-10-03; online 2024-10-03]

Bioinformatics Support for Computational Resources [Service]

An end-to-end workflow for multiplexed image processing and analysis.

Windhager J, Zanotelli VRT, Schulz D, ..., Bodenmiller B, Eling N

Nat Protoc - (-) - [2023-10-10; online 2023-10-10]

BioImage Informatics [Service] Bioinformatics (NBIS) [Service]

SubCellBarCode: integrated workflow for robust spatial proteomics by mass spectrometry.

Arslan T, Pan Y, Mermelekas G, ..., Orre LM, Lehtiö J

Nat Protoc 17 (8) 1832-1867 [2022-08-00; online 2022-06-22]

Global Proteomics and Proteogenomics [Technology development]

Spatial visualization of comprehensive brain neurotransmitter systems and neuroactive substances by selective in situ chemical derivatization mass spectrometry imaging.

Shariatgorji R, Nilsson A, Fridjonsdottir E, ..., Odell LR, Andrén PE

Nat Protoc 16 (7) 3298-3321 [2021-07-00; online 2021-06-02]

Spatial Mass Spectrometry [Technology development]

Isolation and characterization of extracellular vesicle subpopulations from tissues.

Crescitelli R, Lässer C, Lötvall J

Nat Protoc 16 (3) 1548-1580 [2021-03-00; online 2021-01-25]

Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Collaborative]

Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays.

Giacomello S, Lundeberg J

Nat Protoc 13 (11) 2425-2446 [2018-11-00; online 2018-10-26]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections.

Salmén F, Ståhl PL, Mollbrink A, ..., Frisén J, Lundeberg J

Nat Protoc 13 (11) 2501-2534 [2018-11-00; online 2018-10-26]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish.

Varshney GK, Carrington B, Pei W, ..., Sood R, Burgess SM

Nat Protoc 11 (12) 2357-2375 [2016-12-00; online 2016-10-27]

Genome Engineering Zebrafish [Technology development]

The cellular thermal shift assay for evaluating drug target interactions in cells

Jafari R, Almqvist H, Axelsson H, ..., Nordlund P, Molina DM

Nat Protoc 9 (9) 2100-2122 [2014-08-07; online 2014-08-07]

Chemical Biology Consortium Sweden (CBCS) [Technology development]

Quality control and conduct of genome-wide association meta-analyses.

Winkler TW, Day FR, Croteau-Chonka DC, ..., Loos RJ, Genetic Investigation of Anthropometric Traits (GIANT) Consortium

Nat Protoc 9 (5) 1192-1212 [2014-05-00; online 2014-04-24]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Solid-phase proximity ligation assays for individual or parallel protein analyses with readout via real-time PCR or sequencing.

Nong RY, Wu D, Yan J, ..., Landegren U, Darmanis S

Nat Protoc 8 (6) 1234-1248 [2013-06-00; online 2013-05-30]

Affinity Proteomics Uppsala [Technology development] PLA and Single Cell Proteomics