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2023 (242)
2022 (782)
2021 (884)
2020 (630)
2019 (722)
2018 (644)
2017 (679)
2016 (664)
2015 (427)
2014 (376)
2013 (319)
2012 (245)
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BMC Bioinformatics
JSON
ISSN
1471-2105
ISSN-L
1471-2105
IUID
edc8172872c64882b5b47a101d65a6f8
Modified
2020-11-27T13:14:03.615Z
Created
2017-05-09T09:12:21.285Z
Year 2023
PubMed
DOI
Crossref
RegiSTORM: channel registration for multi-color stochastic optical reconstruction microscopy.
Øvrebø Ø, Ojansivu M, Kartasalo K, ..., Holme MN, Stevens MM
BMC Bioinformatics
24
(1) 237 [2023-06-05; online 2023-06-05]
BioImage Informatics [Service]
Year 2022
PubMed
DOI
Crossref
Practical application of a Bayesian network approach to poultry epigenetics and stress.
Videla Rodriguez EA, Pértille F, Guerrero-Bosagna C, ..., Jensen P, Smith VA
BMC Bioinformatics
23
(1) 261 [2022-07-01; online 2022-07-01]
NGI Short read [Service]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.
Kutschera VE
,
Kierczak M
, van der Valk T, ..., Dalén L,
Díez-Del-Molino D
BMC Bioinformatics
23
(1) 228 [2022-06-13; online 2022-06-13]
Bioinformatics Compute and Storage [Service]
Bioinformatics Long-term Support WABI [Technology development]
Bioinformatics Support, Infrastructure and Training [Technology development]
PubMed
DOI
Crossref
PΨFinder: a practical tool for the identification and visualization of novel pseudogenes in DNA sequencing data.
Abrahamsson S, Eiengård F, Rohlin A,
Dávila López M
BMC Bioinformatics
23
(1) 59 [2022-02-03; online 2022-02-03]
Clinical Genomics Gothenburg [Technology development]
Year 2021
PubMed
DOI
Crossref
Comparison of sequencing data processing pipelines and application to underrepresented African human populations.
Breton G
, Johansson ACV, Sjödin P, Schlebusch CM, Jakobsson M
BMC Bioinformatics
22
(1) 488 [2021-10-09; online 2021-10-09]
Bioinformatics Compute and Storage [Service]
Bioinformatics Long-term Support WABI [Collaborative]
Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed
DOI
Crossref
Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps.
Marco Salas S, Gyllborg D, Mattsson Langseth C,
Nilsson M
BMC Bioinformatics
22
(1) 391 [2021-07-31; online 2021-07-31]
In Situ Sequencing (ISS) [Technology development]
PubMed
DOI
Crossref
OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons.
Willforss J, Siino V,
Levander F
BMC Bioinformatics
22
(1) 107 [2021-03-04; online 2021-03-04]
Bioinformatics Support and Infrastructure [Collaborative]
Bioinformatics Support, Infrastructure and Training [Collaborative]
Year 2020
PubMed
DOI
Crossref
GeneSetCluster: a tool for summarizing and integrating gene-set analysis results.
Ewing E
, Planell-Picola N, Jagodic M, Gomez-Cabrero D
BMC Bioinformatics
21
(1) 443 [2020-10-07; online 2020-10-07]
Bioinformatics Compute and Storage [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Loqusdb: added value of an observations database of local genomic variation.
Magnusson M
, Eisfeldt J, Nilsson D, ..., Wedell A, Stranneheim H
BMC Bioinformatics
21
(1) 273 [2020-07-01; online 2020-07-01]
Bioinformatics Compute and Storage [Service]
Clinical Genomics Stockholm [Technology development]
PubMed
DOI
Crossref
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations.
Buetti-Dinh A
,
Herold M
,
Christel S
, ...,
Friedman R
,
Dopson M
BMC Bioinformatics
21
(1) 23 [2020-01-21; online 2020-01-21]
Bioinformatics Compute and Storage [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
Year 2019
PubMed
DOI
Crossref
doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows.
Svensson D, Sjögren R, Sundell D, Sjödin A,
Trygg J
BMC Bioinformatics
20
(1) 498 [2019-10-15; online 2019-10-15]
Bioinformatics Compute and Storage [Service]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Greedy de novo motif discovery to construct motif repositories for bacterial proteomes.
Khakzad H, Malmström J, Malmström L
BMC Bioinformatics
20
(Suppl 4) 141 [2019-04-18; online 2019-04-18]
Structural Proteomics [Technology development]
Year 2017
PubMed
DOI
Crossref
NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis.
Jeggari A, Alexeyenko A
BMC Bioinformatics
18
(Suppl 5) 118 [2017-03-23; online 2017-03-23]
Bioinformatics Support and Infrastructure [Collaborative]
Bioinformatics Support, Infrastructure and Training [Collaborative]
Year 2016
PubMed
DOI
Crossref
Combinatorial identification of DNA methylation patterns over age in the human brain.
Torabi Moghadam B, Dabrowski M, Kaminska B, Grabherr MG, Komorowski J
BMC Bioinformatics
17
(1) 393 [2016-09-23; online 2016-09-23]
Bioinformatics Support and Infrastructure [Service]
Bioinformatics Support, Infrastructure and Training [Service]
PubMed
DOI
Crossref
PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics.
Fernandez-Ricaud L, Kourtchenko O, Zackrisson M, Warringer J, Blomberg A
BMC Bioinformatics
17
(-) 249 [2016-06-23; online 2016-06-23]
Bioinformatics Support and Infrastructure [Technology development]
Bioinformatics Support, Infrastructure and Training [Technology development]
PubMed
DOI
Crossref
Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.
Prezza N, Vezzi F,
Käller M
, Policriti A
BMC Bioinformatics
17 Suppl 4
(-) 69 [2016-03-02; online 2016-03-02]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Collaborative]
National Genomics Infrastructure [Service]
Year 2015
PubMed
DOI
Crossref
MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
Kushwaha SK, Manoharan L, Meerupati T, Hedlund K, Ahrén D
BMC Bioinformatics
16
(-) 65 [2015-02-28; online 2015-02-28]
Bioinformatics Support and Infrastructure
Bioinformatics Support, Infrastructure and Training
Year 2014
PubMed
DOI
Crossref
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis.
Merid SK, Goranskaya D, Alexeyenko A
BMC Bioinformatics
15
(-) 308 [2014-09-19; online 2014-09-19]
Bioinformatics Support and Infrastructure
Bioinformatics Support, Infrastructure and Training
PubMed
DOI
Crossref
BESST--efficient scaffolding of large fragmented assemblies.
Sahlin K, Vezzi F,
Nystedt B
,
Lundeberg J
, Arvestad L
BMC Bioinformatics
15
(-) 281 [2014-08-15; online 2014-08-15]
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
PubMed
DOI
Crossref
A universal genomic coordinate translator for comparative genomics.
Zamani N, Sundström G, Meadows JR, ..., Haas BJ, Grabherr MG
BMC Bioinformatics
15
(-) 227 [2014-06-30; online 2014-06-30]
Bioinformatics Support and Infrastructure
Bioinformatics Support, Infrastructure and Training
Year 2013
PubMed
DOI
Crossref
FANTOM: Functional and taxonomic analysis of metagenomes.
Sanli K, Karlsson FH, Nookaew I,
Nielsen J
BMC Bioinformatics
14
(-) 38 [2013-02-01; online 2013-02-01]
Bioinformatics Support and Infrastructure
Bioinformatics Support, Infrastructure and Training
Year 2010
PubMed
DOI
Crossref
A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins.
Ensterö M, Akerborg O, Lundin D, ..., Ohman M, Lagergren J
BMC Bioinformatics
11
(-) 6 [2010-01-04; online 2010-01-04]
NGI Stockholm (Genomics Applications)
NGI Stockholm (Genomics Production)
National Genomics Infrastructure
SciLifeLab Data Centre
Publications
9.5.0