Gigascience

Arteria: An automation system for a sequencing core facility.

Dahlberg J, Hermansson J, Sturlaugsson S, ..., Hofmann O, Larsson P

Gigascience 8 (12) - [2019-12-01; online 2019-12-12]

Clinical Genomics Uppsala [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Technology development]

SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines.

Lampa S, Dahlö M, Alvarsson J, Spjuth O

Gigascience 8 (5) - [2019-05-01; online 2019-04-28]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]

Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise.

Prost S, Armstrong EE, Nylander J, ..., Ericson PGP, Irestedt M

Gigascience 8 (5) - [2019-05-01; online 2019-01-29]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Software engineering for scientific big data analysis.

Grüning BA, Lampa S, Vaudel M, Blankenberg D

Gigascience 8 (5) - [2019-05-01; online 2019-05-24]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud.

Peters K, Bradbury J, Bergmann S, ..., Zanetti G, Steinbeck C

Gigascience - (-) - [2018-12-07; online 2018-12-07]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Recommendations on e-infrastructures for next-generation sequencing.

Spjuth O, Bongcam-Rudloff E, Dahlberg J, ..., Vezzi F, Korpelainen E

Gigascience 5 (-) 26 [2016-06-07; online 2016-06-07]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Technology development]

De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping.

Olsen RA, Bunikis I, Tiukova I, ..., Käller M, Vezzi F

Gigascience 4 (-) 56 [2015-11-26; online 2015-11-26]

NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure

A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data.

Siretskiy A, Sundqvist T, Voznesenskiy M, Spjuth O

Gigascience 4 (-) 26 [2015-06-04; online 2015-06-04]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data.

Lampa S, Dahlö M, Olason PI, Hagberg J, Spjuth O

Gigascience 2 (1) 9 [2013-06-25; online 2013-06-25]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training