PLoS Comput. Biol.

ISSN	1553-7358
ISSN-L	1553-734X
IUID	c996366f4ad943d1a677e96e156c558e
Modified	2020-11-27T13:14:05.369Z
Created	2017-05-09T09:12:51.417Z

Year 2023

PubMed DOI Crossref

CGG toolkit: Software components for computational genomics.

Vasileiou D, Karapiperis C, Baltsavia I, ..., Enright AJ, Ouzounis CA

PLoS Comput. Biol. 19 (11) e1011498 [2023-11-00; online 2023-11-07]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics.

Gueto-Tettay C, Tang D, Happonen L, ..., Malmström J, Malmström L

PLoS Comput. Biol. 19 (1) e1010457 [2023-01-00; online 2023-01-20]

Structural Proteomics [Technology development]

Year 2022

PubMed DOI Crossref

Combining biomarker and virus phylogenetic models improves HIV-1 epidemiological source identification.

Lundgren E, Romero-Severson E, Albert J, Leitner T

PLoS Comput. Biol. 18 (8) e1009741 [2022-08-00; online 2022-08-26]

Bioinformatics Support for Computational Resources [Service] Clinical Genomics Stockholm [Service]

PubMed DOI Crossref

De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks.

Marco Salas S, Yuan X, Sylven C, ..., Wählby C, Partel G

PLoS Comput. Biol. 18 (8) e1010366 [2022-08-00; online 2022-08-12]

BioImage Informatics [Service] In Situ Sequencing (ISS) [Collaborative]

Year 2021

PubMed DOI Crossref

Machine learning-based investigation of the cancer protein secretory pathway.

Saghaleyni R, Sheikh Muhammad A, Bangalore P, Nielsen J, Robinson JL

PLoS Comput. Biol. 17 (4) e1008898 [2021-04-00; online 2021-04-05]

Bioinformatics Support, Infrastructure and Training [Collaborative] Systems Biology [Collaborative]

PubMed DOI Crossref

Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology.

Khakzad H, Happonen L, Karami Y, ..., Malmström J, Malmström L

PLoS Comput. Biol. 17 (1) e1008169 [2021-01-00; online 2021-01-07]

Structural Proteomics [Collaborative]

Year 2020

PubMed DOI Crossref

A framework to assess the quality and impact of bioinformatics training across ELIXIR.

Gurwitz KT, Singh Gaur P, Bellis LJ, ..., Morgan SL, Rustici G

PLoS Comput. Biol. 16 (7) e1007976 [2020-07-00; online 2020-07-23]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

Year 2019

PubMed DOI Crossref

Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes.

Bomkamp C, Tripathy SJ, Bengtsson Gonzales C, ..., Craig AM, Pavlidis P

PLoS Comput. Biol. 15 (6) e1007113 [2019-06-00; online 2019-06-18]

Eukaryotic Single Cell Genomics (ESCG) [Service]

Year 2018

PubMed DOI Crossref

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor.

Wang H, Marcišauskas S, Sánchez BJ, ..., Nielsen J, Kerkhoven EJ

PLoS Comput. Biol. 14 (10) e1006541 [2018-10-00; online 2018-10-18]

Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]

Year 2017

PubMed DOI Crossref

Fast and general tests of genetic interaction for genome-wide association studies

Frånberg M, Strawbridge RJ, Hamsten A, ..., Sennblad B, None

PLoS Comput. Biol. 13 (6) e1005556 [2017-06-06; online 2017-06-06]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

High GC content causes orphan proteins to be intrinsically disordered.

Basile W, Sachenkova O, Light S, Elofsson A

PLoS Comput. Biol. 13 (3) e1005375 [2017-03-00; online 2017-03-29]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Year 2013

PubMed DOI Crossref

Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq.

Franzén O, Jerlström-Hultqvist J, Einarsson E, ..., Andersson B, Svärd SG

PLoS Comput. Biol. 9 (3) e1003000 [2013-03-28; online 2013-03-28]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

Year 2012

PubMed DOI Crossref

Integrative approach to pain genetics identifies pain sensitivity loci across diseases.

Ruau D, Dudley JT, Chen R, ..., Butte AJ, Angst MS

PLoS Comput. Biol. 8 (6) e1002538 [2012-06-07; online 2012-06-07]

Mutation Analysis Facility (MAF)