Sci Data

ISSN	2052-4463
ISSN-L	2052-4463
IUID	4b1a5e2641b94b09bd8955e93907a2fb
Modified	2020-11-27T13:14:08.930Z
Created	2017-05-09T09:12:49.641Z

Year 2025

PubMed DOI Crossref

The expanded genome of Hexamita inflata, a free-living diplomonad.

Akdeniz Z, Havelka M, Stoklasa M, ..., Andersson JO, Tachezy J

Sci Data 12 (1) 192 [2025-02-01; online 2025-02-01]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

Year 2024

PubMed DOI Crossref

Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19.

Li X, Jayaprasad S, Einarsdottir E, ..., Kawakami T, Palacios-Gimenez OM

Sci Data 11 (1) 997 [2024-09-12; online 2024-09-12]

Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis.

Edelbroek B, Kjellin J, Jerlström-Hultqvist J, Koskiniemi S, Söderbom F

Sci Data 11 (1) 678 [2024-06-22; online 2024-06-22]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Integrative transcriptomic and proteomic profiling of the effects of cell confluency on gene expression.

Lobo V, Shcherbinina E, Westholm JO, ..., Anastasakis DG, Sarshad AA

Sci Data 11 (1) 617 [2024-06-12; online 2024-06-12]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] Glycoproteomics and MS Proteomics [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea.

Latz MAC, Andersson A, Brugel S, ..., Torstensson A, Andersson AF

Sci Data 11 (1) 18 [2024-01-02; online 2024-01-02]

Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2023

PubMed DOI Crossref

Haplotype-resolved genome of heterozygous African cassava cultivar TMEB117 (Manihot esculenta).

Landi M, Shah T, Falquet L, ..., Bongcam-Rudloff E, Gisel A

Sci Data 10 (1) 887 [2023-12-09; online 2023-12-09]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Shotgun metagenomes from productive lakes in an urban region of Sweden.

Rodríguez-Gijón A, Hampel JJ, Dharamshi J, Bertilsson S, Garcia SL

Sci Data 10 (1) 810 [2023-11-17; online 2023-11-17]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2022

PubMed DOI Crossref

Mountain- and brown hare genetic polymorphisms to survey local adaptations and conservation status of the heath hare (Lepus timidus sylvaticus, Nilsson 1831).

Michell CT, Pohjoismäki JLO, Spong G, Thulin CG

Sci Data 9 (1) 667 [2022-11-03; online 2022-11-03]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A chromosome-scale reference genome for Spironucleus salmonicida.

Xu F, Jiménez-González A, Kurt Z, ..., Andersson JO, Svärd SG

Sci Data 9 (1) 585 [2022-09-24; online 2022-09-24]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Inflation of test accuracy due to data leakage in deep learning-based classification of OCT images.

Tampu IE, Eklund A, Haj-Hosseini N

Sci Data 9 (1) 580 [2022-09-22; online 2022-09-22]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination.

Ballarino R, Bouwman BAM, Agostini F, ..., Bienko M, Crosetto N

Sci Data 9 (1) 400 [2022-07-12; online 2022-07-12]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.

Mota A, Schweitzer M, Wernersson E, Crosetto N, Bienko M

Sci Data 9 (1) 47 [2022-02-10; online 2022-02-10]

Spatial Proteomics [Technology development]

Year 2021

PubMed DOI Crossref

Insights into the changes in the proteome of Alzheimer disease elucidated by a meta-analysis.

Haytural H, Benfeitas R, Schedin-Weiss S, ..., Frykman S, Tjernberg LO

Sci Data 8 (1) 312 [2021-12-03; online 2021-12-03]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study.

Zhao Y, Fang LT, Shen T, ..., Hong H, Xiao W

Sci Data 8 (1) 296 [2021-11-09; online 2021-11-09]

NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Community composition of aquatic fungi across the thawing Arctic.

Kluge M, Wurzbacher C, Wauthy M, ..., Stenlid J, Peura S

Sci Data 8 (1) 221 [2021-08-19; online 2021-08-19]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds.

Buck M, Garcia SL, Fernandez L, ..., Bertilsson S, Peura S

Sci Data 8 (1) 131 [2021-05-14; online 2021-05-14]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Year 2020

PubMed DOI Crossref

Key insights in the AIDA community policy on sharing of clinical imaging data for research in Sweden.

Hedlund J, Eklund A, Lundström C

Sci Data 7 (1) 331 [2020-10-06; online 2020-10-06]

AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]

PubMed DOI Crossref

Systems biology of acidophile biofilms for efficient metal extraction.

Buetti-Dinh A, Herold M, Christel S, ..., Pivkin IV, Dopson M

Sci Data 7 (1) 215 [2020-07-07; online 2020-07-07]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Transcriptomic resources for evolutionary studies in flat periwinkles and related species.

Marques JP, Sotelo G, Galindo J, ..., Hollander J, Faria R

Sci Data 7 (1) 73 [2020-03-03; online 2020-03-03]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A chromosome-scale reference genome for Giardia intestinalis WB.

Xu F, Jex A, Svärd SG

Sci Data 7 (1) 38 [2020-02-04; online 2020-02-04]

NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

Year 2019

PubMed DOI Crossref

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

Högfors-Rönnholm E, Lopez-Fernandez M, Christel S, ..., Engblom S, Dopson M

Sci Data 6 (1) 207 [2019-10-16; online 2019-10-16]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2018

PubMed DOI Crossref

Single-cell RNA sequencing of mouse brain and lung vascular and vessel-associated cell types.

He L, Vanlandewijck M, Mäe MA, ..., Lendahl U, Betsholtz C

Sci Data 5 (1) 180160 [2018-08-21; online 2018-08-21]

Bioinformatics Support for Computational Resources [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea.

Alneberg J, Sundh J, Bennke C, ..., Labrenz M, Andersson AF

Sci Data 5 (-) 180146 [2018-07-31; online 2018-07-31]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2016

PubMed DOI Crossref

A microarray whole-genome gene expression dataset in a rat model of inflammatory corneal angiogenesis.

Mukwaya A, Lindvall JM, Xeroudaki M, ..., Jensen LD, Lagali N

Sci Data 3 (-) 160103 [2016-11-22; online 2016-11-22]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The FAIR Guiding Principles for scientific data management and stewardship.

Wilkinson MD, Dumontier M, Aalbersberg IJ, ..., Zhao J, Mons B

Sci Data 3 (-) 160018 [2016-03-15; online 2016-03-15]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]