Sci Data

ISSN	2052-4463
ISSN-L	2052-4463
IUID	4b1a5e2641b94b09bd8955e93907a2fb
Modified	2020-11-27T13:14:08.930Z
Created	2017-05-09T09:12:49.641Z

Year 2022

PubMed DOI Crossref

Mountain- and brown hare genetic polymorphisms to survey local adaptations and conservation status of the heath hare (Lepus timidus sylvaticus, Nilsson 1831).

Michell CT, Pohjoismäki JLO, Spong G, Thulin C

Sci Data 9 (1) 667 [2022-11-03; online 2022-11-03]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A chromosome-scale reference genome for Spironucleus salmonicida.

Xu F, Jiménez-González A, Kurt Z, ..., Andersson JO, Svärd SG

Sci Data 9 (1) 585 [2022-09-24; online 2022-09-24]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Inflation of test accuracy due to data leakage in deep learning-based classification of OCT images.

Tampu IE, Eklund A, Haj-Hosseini N

Sci Data 9 (1) 580 [2022-09-22; online 2022-09-22]

AIDA Data Hub [Service]

PubMed DOI Crossref

An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination.

Ballarino R, Bouwman BAM, Agostini F, ..., Bienko M, Crosetto N

Sci Data 9 (1) 400 [2022-07-12; online 2022-07-12]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.

Mota A, Schweitzer M, Wernersson E, Crosetto N, Bienko M

Sci Data 9 (1) 47 [2022-02-10; online 2022-02-10]

Spatial Proteomics [Technology development]

Year 2021

PubMed DOI Crossref

Insights into the changes in the proteome of Alzheimer disease elucidated by a meta-analysis.

Haytural H, Benfeitas R, Schedin-Weiss S, ..., Frykman S, Tjernberg LO

Sci Data 8 (1) 312 [2021-12-03; online 2021-12-03]

Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study.

Zhao Y, Fang LT, Shen T, ..., Hong H, Xiao W

Sci Data 8 (1) 296 [2021-11-09; online 2021-11-09]

NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Community composition of aquatic fungi across the thawing Arctic.

Kluge M, Wurzbacher C, Wauthy M, ..., Stenlid J, Peura S

Sci Data 8 (1) 221 [2021-08-19; online 2021-08-19]

Bioinformatics Compute and Storage [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds.

Buck M, Garcia SL, Fernandez L, ..., Bertilsson S, Peura S

Sci Data 8 (1) 131 [2021-05-14; online 2021-05-14]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Year 2020

PubMed DOI Crossref

Key insights in the AIDA community policy on sharing of clinical imaging data for research in Sweden.

Hedlund J, Eklund A, Lundström C

Sci Data 7 (1) 331 [2020-10-06; online 2020-10-06]

AIDA Data Hub [Service]

PubMed DOI Crossref

Systems biology of acidophile biofilms for efficient metal extraction.

Buetti-Dinh A, Herold M, Christel S, ..., Pivkin IV, Dopson M

Sci Data 7 (1) 215 [2020-07-07; online 2020-07-07]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Transcriptomic resources for evolutionary studies in flat periwinkles and related species.

Marques JP, Sotelo G, Galindo J, ..., Hollander J, Faria R

Sci Data 7 (1) 73 [2020-03-03; online 2020-03-03]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A chromosome-scale reference genome for Giardia intestinalis WB.

Xu F, Jex A, Svärd SG

Sci Data 7 (1) 38 [2020-02-04; online 2020-02-04]

NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

Year 2019

PubMed DOI Crossref

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

Högfors-Rönnholm E, Lopez-Fernandez M, Christel S, ..., Engblom S, Dopson M

Sci Data 6 (1) 207 [2019-10-16; online 2019-10-16]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2018

PubMed DOI Crossref

Single-cell RNA sequencing of mouse brain and lung vascular and vessel-associated cell types.

He L, Vanlandewijck M, Mäe MA, ..., Lendahl U, Betsholtz C

Sci Data 5 (1) 180160 [2018-08-21; online 2018-08-21]

Bioinformatics Compute and Storage [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea.

Alneberg J, Sundh J, Bennke C, ..., Labrenz M, Andersson AF

Sci Data 5 (-) 180146 [2018-07-31; online 2018-07-31]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2016

PubMed DOI Crossref

A microarray whole-genome gene expression dataset in a rat model of inflammatory corneal angiogenesis.

Mukwaya A, Lindvall JM, Xeroudaki M, ..., Jensen LD, Lagali N

Sci Data 3 (-) 160103 [2016-11-22; online 2016-11-22]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The FAIR Guiding Principles for scientific data management and stewardship.

Wilkinson MD, Dumontier M, Aalbersberg IJ, ..., Zhao J, Mons B

Sci Data 3 (-) 160018 [2016-03-15; online 2016-03-15]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]