Nat. Biotechnol.

ISSN	1546-1696
ISSN-L	1087-0156
IUID	9543948802234b61b1d3125b0364b852
Modified	2020-11-27T13:14:05.129Z
Created	2017-05-09T09:12:03.273Z

Year 2024

PubMed DOI Crossref

Detection of transcriptome-wide microRNA-target interactions in single cells with agoTRIBE.

Sekar V, Mármol-Sánchez E, Kalogeropoulos P, ..., Biryukova I, Friedländer MR

Nat. Biotechnol. 42 (8) 1296-1302 [2024-08-00; online 2023-09-21]

Bioinformatics Support for Computational Resources [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A community effort to track commercial single-cell and spatial 'omic technologies and business trends.

De Jonghe J, Opzoomer JW, Vilas-Zornoza A, ..., Cribbs AP, Taylor-King JP

Nat. Biotechnol. 42 (7) 1017-1023 [2024-07-00; online 2024-07-18]

In Situ Sequencing (ISS) [Service]

PubMed DOI Crossref

High-throughput measurement of the content and properties of nano-sized bioparticles with single-particle profiler.

Sych T, Schlegel J, Barriga HMG, ..., Stevens MM, Sezgin E

Nat. Biotechnol. 42 (4) 587-590 [2024-04-00; online 2023-06-12]

Integrated Microscopy Technologies Stockholm [Service]

Year 2023

PubMed DOI Crossref

Spatial multimodal analysis of transcriptomes and metabolomes in tissues.

Vicari M, Mirzazadeh R, Nilsson A, ..., Andrén PE, Lundeberg J

Nat. Biotechnol. - (-) - [2023-09-04; online 2023-09-04]

In Situ Sequencing (ISS) [Collaborative] Spatial Mass Spectrometry [Collaborative]

PubMed DOI Crossref

Solid-phase capture and profiling of open chromatin by spatial ATAC.

Llorens-Bobadilla E, Zamboni M, Marklund M, ..., Frisén J, Ståhl PL

Nat. Biotechnol. 41 (8) 1085-1088 [2023-08-00; online 2023-01-05]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Spatial omics NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag.

Bartosovic M, Castelo-Branco G

Nat. Biotechnol. 41 (6) 794-805 [2023-06-00; online 2022-12-19]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models.

Allesøe RL, Lundgaard AT, Hernández Medina R, ..., Brunak S, IMI DIRECT Consortium

Nat. Biotechnol. - (-) - [2023-01-02; online 2023-01-02]

Affinity Proteomics Stockholm [Collaborative]

Year 2022

PubMed DOI Crossref

Deep Visual Proteomics defines single-cell identity and heterogeneity.

Mund A, Coscia F, Kriston A, ..., Horvath P, Mann M

Nat. Biotechnol. 40 (8) 1231-1240 [2022-08-00; online 2022-05-19]

Spatial Proteomics [Service]

Year 2021

PubMed DOI Crossref

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing.

Xiao W, Ren L, Chen Z, ..., Wang C, Shi L

Nat. Biotechnol. 39 (9) 1141-1150 [2021-09-00; online 2021-09-09]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.

Fang LT, Zhu B, Zhao Y, ..., Xiao W, Somatic Mutation Working Group of Sequencing Quality Control Phase II Consortium

Nat. Biotechnol. 39 (9) 1151-1160 [2021-09-00; online 2021-09-09]

NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues.

Bartosovic M, Kabbe M, Castelo-Branco G

Nat. Biotechnol. 39 (7) 825-835 [2021-07-00; online 2021-04-12]

Bioinformatics Support for Computational Resources [Service] Eukaryotic Single Cell Genomics (ESCG) [Collaborative] NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

PubMed DOI Crossref

Building a high-quality Human Cell Atlas.

Rozenblatt-Rosen O, Shin JW, Rood JE, ..., Regev A, Heyn H

Nat. Biotechnol. 39 (2) 149-153 [2021-02-00; online 2021-01-28]

Spatial Proteomics [Technology development]

Year 2020

PubMed DOI Crossref

GPSeq reveals the radial organization of chromatin in the cell nucleus.

Girelli G, Custodio J, Kallas T, ..., Crosetto N, Bienko M

Nat. Biotechnol. 38 (10) 1184-1193 [2020-10-00; online 2020-05-25]

Integrated Microscopy Technologies Stockholm [Service]

PubMed DOI Crossref

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects.

Mereu E, Lafzi A, Moutinho C, ..., Stegle O, Heyn H

Nat. Biotechnol. 38 (6) 747-755 [2020-06-00; online 2020-04-06]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Single-cell RNA counting at allele and isoform resolution using Smart-seq3.

Hagemann-Jensen M, Ziegenhain C, Chen P, ..., Faridani OR, Sandberg R

Nat. Biotechnol. 38 (6) 708-714 [2020-06-00; online 2020-05-04]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The nf-core framework for community-curated bioinformatics pipelines.

Ewels PA, Peltzer A, Fillinger S, ..., Di Tommaso P, Nahnsen S

Nat. Biotechnol. 38 (3) 276-278 [2020-03-00; online 2020-02-15]

NGI Stockholm (Genomics Applications) [Technology development] NGI Stockholm (Genomics Production) [Technology development] National Genomics Infrastructure [Technology development]

Year 2019

PubMed DOI Crossref

Goodbye reference, hello genome graphs.

Ameur A

Nat. Biotechnol. 37 (8) 866-868 [2019-08-00; online 2019-08-04]

Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

Year 2018

PubMed DOI Crossref

A protein activity assay to measure global transcription factor activity reveals determinants of chromatin accessibility.

Wei B, Jolma A, Sahu B, ..., Taipale M, Taipale J

Nat. Biotechnol. 36 (6) 521-529 [2018-07-00; online 2018-05-21]

Global Proteomics and Proteogenomics [Collaborative]

Year 2017

PubMed DOI Crossref

Induction of functional dopamine neurons from human astrocytes in vitro and mouse astrocytes in a Parkinson's disease model.

Rivetti di Val Cervo P, Romanov RA, Spigolon G, ..., Fisone G, Arenas E

Nat. Biotechnol. 35 (5) 444-452 [2017-05-00; online 2017-04-10]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2015

PubMed DOI Crossref

Multi-omic data analysis using Galaxy.

Boekel J, Chilton JM, Cooke IR, ..., Moerland PD, Griffin TJ

Nat. Biotechnol. 33 (2) 137-139 [2015-02-00; online 2015-02-07]

Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training Clinical Proteomics Mass spectrometry

Year 2013

PubMed DOI Crossref

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

't Hoen PA, Friedländer MR, Almlöf J, ..., Dermitzakis ET, Lappalainen T

Nat. Biotechnol. 31 (11) 1015-1022 [2013-11-00; online 2013-09-17]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure

PubMed DOI Crossref

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.

Liu Y, Aryee MJ, Padyukov L, ..., Ekström TJ, Feinberg AP

Nat. Biotechnol. 31 (2) 142-147 [2013-02-00; online 2013-01-22]

Mutation Analysis Facility (MAF)

Year 2010

PubMed DOI Crossref

Towards a knowledge-based Human Protein Atlas.

Uhlen M, Oksvold P, Fagerberg L, ..., Björling L, Ponten F

Nat. Biotechnol. 28 (12) 1248-1250 [2010-12-00; online 2010-12-09]

Spatial Proteomics