Swedish Metabolomics Centre (SMC) (120 publications)

Publications

SciLifeLab National facility since 2016.

120 publications

Year 2020

Metabolic Profiling and Compound-Class Identification Reveal Alterations in Serum Triglyceride Levels in Mice Immunized with Human Vaccine Adjuvant Alum

Khoomrung S, Nookaew I, Sen P, ..., Harandi AM, Nielsen J

J. Proteome Res. 19 (1) 269-278 [2020-01-03; online 2019-10-18]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Metabolic response patterns in brain microdialysis fluids and serum during interstitial cisplatin treatment of high-grade glioma

Björkblom B, Jonsson P, Tabatabaei P, ..., Bergenheim AT, Antti H

Br J Cancer 122 (2) 221-232 [2020-01-00; online 2019-12-10]

Swedish Metabolomics Centre (SMC) [Service]

Year 2019

DOI Crossref

HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion

van der Woude LC, Perrella G, Snoek BL, ..., Kaiserli E, van Zanten M

Proc Natl Acad Sci USA 116 (50) 25343-25354 [2019-12-10; online 2019-11-25]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

GLUL Ablation Can Confer Drug Resistance to Cancer Cells via a Malate-Aspartate Shuttle-Mediated Mechanism

Muthu M, Kumar R, Syed Khaja AS, ..., Persson JL, Nordström A

Cancers (Basel) 11 (12) 1945 [2019-12-05; online 2019-12-05]

Bioinformatics Compute and Storage [Service] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Metabolic phenotype of breast-fed infants, and infants fed standard formula or bovine MFGM supplemented formula: a randomized controlled trial

He X, Parenti M, Grip T, ..., Timby N, Slupsky CM

Sci Rep 9 (1) - [2019-12-00; online 2019-01-23]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Surveillance of cell wall diffusion barrier integrity modulates water and solute transport in plants

Wang P, Calvo-Polanco M, Reyt G, ..., Boursiac Y, Salt DE

Sci Rep 9 (1) - [2019-12-00; online 2019-03-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Heterologous phosphoketolase expression redirects flux towards acetate, perturbs sugar phosphate pools and increases respiratory demand in Saccharomyces cerevisiae

Bergman A, Hellgren J, Moritz T, ..., Nielsen J, Chen Y

Microb. Cell Fact. 18 (1) - [2019-12-00; online 2019-02-01]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

A bacterial assay for rapid screening of IAA catabolic enzymes

Brunoni F, Collani S, Šimura J, ..., Bellini C, Ljung K

Plant Methods 15 (1) - [2019-12-00; online 2019-11-04]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Publisher Correction: Metabolic phenotype of breast-fed infants, and infants fed standard formula or bovine MFGM supplemented formula: a randomized controlled trial

He X, Parenti M, Grip T, ..., Timby N, Slupsky CM

Sci Rep 9 (1) - [2019-12-00; online 2019-08-22]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Two-step derivatization for determination of sugar phosphates in plants by combined reversed phase chromatography/tandem mass spectrometry

Rende U, Niittylä T, Moritz T

Plant Methods 15 (1) - [2019-12-00; online 2019-11-07]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Autoregulation of RCO by Low-Affinity Binding Modulates Cytokinin Action and Shapes Leaf Diversity

Hajheidari M, Wang Y, Bhatia N, ..., Gan X, Tsiantis M

Current Biology 29 (24) 4183-4192.e6 [2019-12-00; online 2019-12-00]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes

Diamanti K, Cavalli M, Pan G, ..., Komorowski J, Wadelius C

Sci Rep 9 (1) - [2019-12-00; online 2019-07-04]

Bioinformatics Compute and Storage [Service] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

PECTIN ACETYLESTERASE9 Affects the Transcriptome and Metabolome and Delays Aphid Feeding

Kloth KJ, Abreu IN, Delhomme N, ..., Moritz T, Albrectsen BR

Plant Physiol. 181 (4) 1704-1720 [2019-12-00; online 2019-09-24]

Bioinformatics Compute and Storage [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Targeted Multiple Reaction Monitoring Analysis of CSF Identifies UCHL1 and GPNMB as Candidate Biomarkers for ALS

Zhu S, Wuolikainen A, Wu J, ..., Forsgren L, Trupp M

J Mol Neurosci 69 (4) 643-657 [2019-12-00; online 2019-11-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Synthesis of Indomorphan Pseudo-Natural Product Inhibitors of Glucose Transporters GLUT-1 and -3

Ceballos J, Schwalfenberg M, Karageorgis G, ..., Ziegler S, Waldmann H

Angew. Chem. Int. Ed. 58 (47) 17016-17025 [2019-11-18; online 2019-10-07]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels

Van Moerkercke A, Duncan O, Zander M, ..., Millar AH, Van Aken O

Proc Natl Acad Sci USA 116 (46) 23345-23356 [2019-11-12; online 2019-10-29]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

PIN-driven auxin transport emerged early in streptophyte evolution

Skokan R, Medvecká E, Viaene T, ..., Petrášek J, Friml J

NPLANTS 5 (11) 1114-1119 [2019-11-00; online 2019-11-11]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Lipidomics in Ulcerative Colitis Reveal Alteration in Mucosal Lipid Composition Associated With the Disease State

Diab J, Hansen T, Goll R, ..., Florholmen J, Forsdahl G

- 25 (11) 1780-1787 [2019-10-18; online 2019-05-11]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Implantable Organic Electronic Ion Pump Enables ABA Hormone Delivery for Control of Stomata in an Intact Tobacco Plant

Bernacka‐Wojcik I, Huerta M, Tybrandt K, ..., Berggren M, Stavrinidou E

Small 15 (43) 1902189 [2019-10-00; online 2019-09-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Leaf metabolic signatures induced by real and simulated herbivory in black mustard (Brassica nigra)

Papazian S, Girdwood T, Wessels BA, ..., Moritz T, Albrectsen BR

Metabolomics 15 (10) - [2019-10-00; online 2019-09-28]

Bioinformatics Compute and Storage [Service] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Combining microdialysis with metabolomics to characterize the in situ composition of dissolved organic compounds in boreal forest soil

Randewig D, Marshall JD, Näsholm T, Jämtgård S

Soil Biology and Biochemistry 136 (-) 107530 [2019-09-00; online 2019-09-00]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Yeast Volatomes Differentially Affect Larval Feeding in an Insect Herbivore

Ljunggren J, Borrero-Echeverry F, Chakraborty A, ..., Witzgall P, Bengtsson M

Appl Environ Microbiol 85 (21) - [2019-08-23; online 2019-10-16]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

A role for the auxin precursor anthranilic acid in root gravitropism via regulation of PIN-FORMED protein polarity and relocalisation in Arabidopsis

Doyle SM, Rigal A, Grones P, ..., Novák O, Robert S

New Phytol 223 (3) 1420-1432 [2019-08-00; online 2019-06-07]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Vitamin D and Phenylbutyrate Supplementation Does Not Modulate Gut Derived Immune Activation in HIV-1

Missailidis C, Sørensen N, Ashenafi S, ..., Brighenti S, Bergman P

Nutrients 11 (7) 1675 [2019-07-21; online 2019-07-21]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

The molecular pathogenesis of superoxide dismutase 1-linked ALS is promoted by low oxygen tension

Keskin I, Forsgren E, Lehmann M, ..., Marklund SL, Gilthorpe JD

Acta Neuropathol 138 (1) 85-101 [2019-07-00; online 2019-03-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Alterations in the metabolism of phospholipids, bile acids and branched-chain amino acids predicts development of type 2 diabetes in black South African women: a prospective cohort study

Zeng Y, Mtintsilana A, Goedecke JH, ..., Olsson T, Chorell E

Metabolism 95 (-) 57-64 [2019-06-00; online 2019-06-00]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Metabolic profiling of zebrafish embryo development from blastula period to early larval stages

Dhillon SS, Torell F, Donten M, ..., Trygg J, Lundstedt T

PLoS ONE 14 (5) e0213661 [2019-05-14; online 2019-05-14]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Comparisons of analysis of fatty acid methyl ester (FAME) of microalgae by chromatographic techniques

Niemi C, Lage S, Gentili FG

Algal Research 39 (-) 101449 [2019-05-00; online 2019-05-00]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development

Vain T, Raggi S, Ferro N, ..., Pauwels L, Robert S

Proc Natl Acad Sci USA 116 (13) 6463-6472 [2019-03-26; online 2019-03-08]

Chemical Biology Consortium Sweden (CBCS) [Collaborative] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Current Status and Future Prospects of Clinically Exploiting Cancer-specific Metabolism—Why Is Tumor Metabolism Not More Extensively Translated into Clinical Targets and Biomarkers?

Muthu M, Nordström A

Int J Mol Sci 20 (6) 1385 [2019-03-19; online 2019-03-19]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Regulatory Diversification of INDEHISCENT in the Capsella Genus Directs Variation in Fruit Morphology

Dong Y, Jantzen F, Stacey N, ..., Ljung K, Østergaard L

Current Biology 29 (6) 1038-1046.e4 [2019-03-00; online 2019-03-00]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Auxin export from proximal fruits drives arrest in competent inflorescence meristems

Ware A, Walker CH, Šimura J, ..., Wilson Z, Bennett T

- - (-) - [2019-02-06; online 2019-02-06]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Metabolomic and lipidomic assessment of the metabolic syndrome in Dutch middle-aged individuals reveals novel biological signatures separating health and disease

Surowiec I, Noordam R, Bennett K, ..., Lundstedt T, van Heemst D

Metabolomics 15 (2) - [2019-02-00; online 2019-02-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

DOP15 Metabolomics coupled with pathway analysis characterise metabolic changes in treatment-naive ulcerative colitis patients

Diab J, Hansen T, Goll R, ..., Florholmen J, Forsdahl G

- 13 (Supplement_1) S035-S035 [2019-01-25; online 2019-01-25]

Swedish Metabolomics Centre (SMC) [Collaborative]

DOI Crossref

Auxin Function in the Brown Alga Dictyota dichotoma

Bogaert KA, Blommaert L, Ljung K, Beeckman T, De Clerck O

Plant Physiol. 179 (1) 280-299 [2019-01-00; online 2018-11-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

A standardized protocol for comparable analysis of GSH/GSSG by UHPLC-ESI-MSMS for human plasma

Claeson AS, Gouveia-Figueira S, Stenlund H, Johansson AI

Journal of Chromatography B 1104 (-) 67-72 [2019-01-00; online 2019-01-00]

Swedish Metabolomics Centre (SMC) [Collaborative]

DOI Crossref

Tissue-specific hormone profiles from woody poplar roots under bending stress

De Zio E, Trupiano D, Karady M, ..., Ljung K, Scippa GS

Physiol Plantarum 165 (1) 101-113 [2019-01-00; online 2018-10-15]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Joint and unique multiblock analysis of biological data – multiomics malaria study

Surowiec I, Skotare T, Sjögren R, ..., Normark J, Trygg J

Faraday Discuss. 218 (-) 268-283 [2019-00-00; online 2019-00-00]

Swedish Metabolomics Centre (SMC) [Service]

Year 2018

DOI Crossref

Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate

Giri J, Bhosale R, Huang G, ..., Swarup R, Bennett MJ

Nat Commun 9 (1) - [2018-12-00; online 2018-04-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees

Obudulu O, Mähler N, Skotare T, ..., Trygg J, Tuominen H

BMC Genomics 19 (1) - [2018-12-00; online 2018-01-03]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Bhosale R, Giri J, Pandey BK, ..., Bennett MJ, Swarup R

Nat Commun 9 (1) - [2018-12-00; online 2018-04-12]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

A Quantitative Analysis of Colonic Mucosal Oxylipins and Endocannabinoids in Treatment-Naïve and Deep Remission Ulcerative Colitis Patients and the Potential Link With Cytokine Gene Expression

Diab J, Al-Mahdi R, Gouveia-Figueira S, ..., Florholmen J, Forsdahl G

- - (-) - [2018-11-22; online 2018-11-22]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Satiety Factors Oleoylethanolamide, Stearoylethanolamide, and Palmitoylethanolamide in Mother’s Milk Are Strongly Associated with Infant Weight at Four Months of Age—Data from the Odense Child Cohort

Bruun S, Gouveia-Figueira S, Domellöf M, ..., Fowler C, Zachariassen G

Nutrients 10 (11) 1747 [2018-11-13; online 2018-11-13]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Nitrogen utilization during germination of somatic embryos of Norway spruce: revealing the importance of supplied glutamine for nitrogen metabolism

Carlsson J, Egertsdotter U, Ganeteg U, Svennerstam H

Trees - (-) - [2018-11-09; online 2018-11-09]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water

Orman-Ligeza B, Morris EC, Parizot B, ..., Beeckman T, Draye X

Current Biology 28 (19) 3165-3173.e5 [2018-10-00; online 2018-10-00]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Broad spectrum developmental role of Brachypodium AUX1

van der Schuren A, Voiniciuc C, Bragg J, ..., Pauly M, Hardtke CS

New Phytol 219 (4) 1216-1223 [2018-09-00; online 2018-06-27]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans

Cedernaes J, Schönke M, Westholm JO, ..., Zierath JR, Benedict C

Sci Adv 4 (8) eaar8590 [2018-08-00; online 2018-08-22]

Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Metabolic Profiling of Multiorgan Samples: Evaluation of MODY5/RCAD Mutant Mice

Torell F, Bennett K, Cereghini S, ..., Trygg J, Lundstedt T

J. Proteome Res. 17 (7) 2293-2306 [2018-07-06; online 2018-06-06]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

A heterogeneous response of liver and skeletal muscle fat to the combination of a Paleolithic diet and exercise in obese individuals with type 2 diabetes: a randomised controlled trial

Otten J, Stomby A, Waling M, ..., Hauksson J, Olsson T

Diabetologia 61 (7) 1548-1559 [2018-07-00; online 2018-04-26]

Bioinformatics Compute and Storage [Service] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Simultaneous determination of ribonucleoside and deoxyribonucleoside triphosphates in biological samples by hydrophilic interaction liquid chromatography coupled with tandem mass spectrometry

Kong Z, Jia S, Chabes AL, ..., Moritz T, Chabes A

Nucleic Acids Res 46 (11) e66-e66 [2018-06-20; online 2018-03-15]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees

Edwards KD, Takata N, Johansson M, ..., Ljung K, Eriksson ME

Plant, Cell & Environment 41 (6) 1468-1482 [2018-06-00; online 2018-04-15]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Assessing Cu impacts on freshwater diatoms: biochemical and metabolomic responses of Tabellaria flocculosa (Roth) Kützing

Gonçalves S, Kahlert M, Almeida SFP, Figueira E

Science of The Total Environment 625 (-) 1234-1246 [2018-06-00; online 2018-06-00]

Bioinformatics Compute and Storage [Service] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Plant Hormonomics: Multiple Phytohormone Profiling by Targeted Metabolomics

Šimura J, Antoniadi I, Široká J, ..., Ljung K, Novák O

Plant Physiol. 177 (2) 476-489 [2018-06-00; online 2018-04-27]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Ultra-rapid auxin metabolite profiling for high-throughput mutant screening in Arabidopsis

Pěnčík A, Casanova-Sáez R, Pilařová V, ..., Ljung K, Novák O

- 69 (10) 2569-2579 [2018-04-27; online 2018-03-03]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Modulation of saturation and chain length of fatty acids in Saccharomyces cerevisiae for production of cocoa butter-like lipids

Bergenholm D, Gossing M, Wei Y, Siewers V, Nielsen J

Biotechnol. Bioeng. 115 (4) 932-942 [2018-04-00; online 2018-01-24]

Bioinformatics Compute and Storage [Service] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Transcriptional stimulation of rate-limiting components of the autophagic pathway improves plant fitness

Minina EA, Moschou PN, Vetukuri RR, ..., Hofius D, Bozhkov PV

- 69 (6) 1415-1432 [2018-03-14; online 2018-01-20]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Darkened leaves use different metabolic strategies for senescence and survival

Law SR, Chrobok D, Juvany M, ..., Gardestrom P, Keech O

Plant Physiol. - (-) pp.00062.2018 [2018-03-09; online 2018-03-09]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Interferon γ treatment increases endocannabinoid and related N-acylethanolamine levels in T84 human colon carcinoma cells

Alhouayek M, Rankin L, Gouveia-Figueira S, Fowler CJ

British Journal of Pharmacology - (-) - [2018-02-05; online 2018-02-05]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Red meat intake in chronic kidney disease patients: Two sides of the coin

Mafra D, Borges NA, Cardozo LFMdF, ..., Lindholm B, Stenvinkel P

Nutrition 46 (-) 26-32 [2018-02-00; online 2018-02-00]

Bioinformatics Compute and Storage [Service] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

A Common Peptidolytic Mechanism for Targeting Peptide Degradation in Mitochondria and Chloroplasts

Kmiec B, Branca RMM, Murcha MW, ..., Glaser E, Teixeira PF

Molecular Plant 11 (2) 342-345 [2018-02-00; online 2018-02-00]

Proteogenomics [Service] Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Optimising methods for the recovery and quantification of di- and tripeptides in soil

J�mtg�rd S, Robinson N, Moritz T, Colgrave ML, Schmidt S

Soil Res. - (-) - [2018-00-00; online 2018-00-00]

Swedish Metabolomics Centre (SMC) [Service]

Year 2017

DOI Crossref

Metabolome and transcriptome profiling reveal new insights into somatic embryo germination in Norway spruce (Picea abies)

Dobrowolska I, Businge E, Abreu IN, Moritz T, Egertsdotter U

Tree Physiol 37 (12) 1752-1766 [2017-12-01; online 2017-06-28]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Brassinosteroid signaling-dependent root responses to prolonged elevated ambient temperature

Martins S, Montiel-Jorda A, Cayrel A, ..., Ljung K, Vert G

Nat Commun 8 (1) - [2017-12-00; online 2017-08-21]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

The oxylipin and endocannabidome responses in acute phase Plasmodium falciparum malaria in children

Surowiec I, Gouveia-Figueira S, Orikiiriza J, ..., Normark J, Trygg J

Malar. J. 16 (1) - [2017-12-00; online 2017-09-08]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Combined transcriptome and translatome analyses reveal a role for tryptophan-dependent auxin biosynthesis in the control of DOG1-dependent seed dormancy

Bai B, Novák O, Ljung K, Hanson J, Bentsink L

New Phytol - (-) - [2017-11-15; online 2017-11-15]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1

Yan Z, Liu X, Ljung K, ..., Wang M, Tao Y

Plant Physiol. 175 (3) 1438-1454 [2017-11-00; online 2017-09-20]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Multivariate strategy for the sample selection and integration of multi-batch data in metabolomics

Surowiec I, Johansson E, Torell F, ..., Jakobsson PJ, Trygg J

Metabolomics 13 (10) - [2017-10-00; online 2017-08-24]

Swedish Metabolomics Centre (SMC) [Technology development]

DOI Crossref

Effects of tumour necrosis factor α upon the metabolism of the endocannabinoid anandamide in prostate cancer cells

Karlsson J, Gouveia-Figueira S, Alhouayek M, Fowler CJ

PLoS ONE 12 (9) e0185011 [2017-09-14; online 2017-09-14]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Auxin minimum triggers the developmental switch from cell division to cell differentiation in theArabidopsisroot

Di Mambro R, De Ruvo M, Pacifici E, ..., Grieneisen VA, Sabatini S

Proc Natl Acad Sci USA 114 (36) E7641-E7649 [2017-09-05; online 2017-08-22]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Enhanced Secondary- and Hormone Metabolism in Leaves of Arbuscular Mycorrhizal Medicago truncatula

Adolfsson L, Nziengui H, Abreu IN, ..., Schoefs B, Spetea C

Plant Physiol. 175 (1) 392-411 [2017-09-00; online 2017-07-11]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Nitrogen uptake and assimilation in proliferating embryogenic cultures of Norway spruce—Investigating the specific role of glutamine

Carlsson J, Svennerstam H, Moritz T, Egertsdotter U, Ganeteg U

PLoS ONE 12 (8) e0181785 [2017-08-24; online 2017-08-24]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Dual herbivore attack and herbivore density affect metabolic profiles of Brassica nigra leaves

Ponzio C, Papazian S, Albrectsen BR, Dicke M, Gols R

Plant, Cell & Environment 40 (8) 1356-1367 [2017-08-00; online 2017-02-24]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Tuning Metabolome Coverage in Reversed Phase LC–MS Metabolomics of MeOH Extracted Samples Using the Reconstitution Solvent Composition

Lindahl A, Sääf S, Lehtiö J, Nordström A

Anal. Chem. 89 (14) 7356-7364 [2017-07-18; online 2017-06-28]

Clinical Proteomics Mass spectrometry [Service] Proteogenomics [Service] Swedish Metabolomics Centre (SMC) [Technology development]

PubMed DOI Crossref

Establishment of photosynthesis is controlled by two distinct regulatory phases

Dubreuil C, Jin X, Barajas-López JdD, ..., Small ID, Strand A

Plant Physiol. - (-) pp.00435.2017 [2017-06-16; online 2017-06-16]

Cryo-EM [Service] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Levels of oxylipins, endocannabinoids and related lipids in plasma before and after low-level exposure to acrolein in healthy individuals and individuals with chemical intolerance

Claeson AS, Gouveia-Figueira S, Häggström J, Fowler CJ, Nording ML

Prostaglandins, Leukotrienes and Essential Fatty Acids (PLEFA) 121 (-) 60-67 [2017-06-00; online 2017-06-00]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

The effects of thawing on the plasma metabolome: evaluating differences between thawed plasma and multi-organ samples

Torell F, Bennett K, Rännar S, ..., Lundstedt T, Trygg J

Metabolomics 13 (6) - [2017-06-00; online 2017-04-17]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Metabolite quantification by NMR and LC-MS/MS reveals differences between unstimulated, stimulated, and pure parotid saliva

Figueira J, Gouveia-Figueira S, Öhman C, ..., Nording ML, Öhman A

Journal of Pharmaceutical and Biomedical Analysis 140 (-) 295-300 [2017-06-00; online 2017-06-00]

Swedish Metabolomics Centre (SMC) [Service] Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

Reproducible diagnostic metabolites in plasma from typhoid fever patients in Asia and Africa

Näsström E, Parry CM, Vu Thieu NT, ..., Antti H, Baker S

Elife 6 (-) - [2017-05-09; online 2017-05-09]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Regulating plant physiology with organic electronics

Poxson DJ, Karady M, Gabrielsson R, ..., Simon DT, Berggren M

Proc Natl Acad Sci USA 114 (18) 4597-4602 [2017-05-02; online 2017-04-18]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Contrasting patterns of cytokinins between years in senescing aspen leaves

Edlund E, Novak O, Karady M, Ljung K, Jansson S

Plant, Cell & Environment 40 (5) 622-634 [2017-05-00; online 2017-03-27]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Discrimination of pancreatic cancer and pancreatitis by LC-MS metabolomics

Lindahl A, Heuchel R, Forshed J, ..., Löhr M, Nordström A

Metabolomics 13 (5) - [2017-05-00; online 2017-04-01]

Clinical Proteomics Mass spectrometry [Service] Proteogenomics [Service] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Lipid response patterns in acute phase paediatric Plasmodium falciparum malaria

Orikiiriza J, Surowiec I, Lindquist E, ..., Trygg J, Normark J

Metabolomics 13 (4) - [2017-04-00; online 2017-02-23]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Neonatal Cord Blood Oxylipins and Exposure to Particulate Matter in the Early-Life Environment: An ENVIRONAGE Birth Cohort Study.

Martens DS, Gouveia S, Madhloum N, ..., Nording M, Nawrot TS

pmc

Environ. Health Perspect. 125 (4) 691-698 [2017-04-00; online 2016-11-05]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

The anti-inflammatory compound palmitoylethanolamide inhibits prostaglandin and hydroxyeicosatetraenoic acid production by a macrophage cell line

Gabrielsson L, Gouveia-Figueira S, Häggström J, Alhouayek M, Fowler CJ

Pharmacol Res Perspect 5 (2) e00300 [2017-04-00; online 2017-02-27]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Altered expression of maize PLASTOCHRON1 enhances biomass and seed yield by extending cell division duration

Sun X, Cahill J, Van Hautegem T, ..., Inzé D, Nelissen H

Nat Commun 8 (-) 14752 [2017-03-16; online 2017-03-16]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Reducing VEGF-B Signaling Ameliorates Renal Lipotoxicity and Protects against Diabetic Kidney Disease

Falkevall A, Mehlem A, Palombo I, ..., Nash A, Eriksson U

Cell Metabolism 25 (3) 713-726 [2017-03-00; online 2017-03-00]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

The Arabidopsis bZIP11 transcription factor links low-energy signalling to auxin-mediated control of primary root growth

Weiste C, Pedrotti L, Selvanayagam J, ..., Hanson J, Dröge-Laser W

PLoS Genet. 13 (2) e1006607 [2017-02-03; online 2017-02-03]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Defense Responses in Aspen with Altered Pectin Methylesterase Activity Reveal the Hormonal Inducers of Tyloses

Leśniewska J, Öhman D, Krzesłowska M, ..., Moritz T, Mellerowicz EJ

Plant Physiol. 173 (2) 1409-1419 [2017-02-00; online 2016-12-06]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

cis-Cinnamic Acid Is a Novel, Natural Auxin Efflux Inhibitor That Promotes Lateral Root Formation

Steenackers W, Klíma P, Quareshy M, ..., Boerjan W, Vanholme B

Plant Physiol. 173 (1) 552-565 [2017-01-00; online 2016-11-11]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

A multi-step peptidolytic cascade for amino acid recovery in chloroplasts

Teixeira PF, Kmiec B, Branca RMM, ..., Lehtiö J, Glaser E

Nat Chem Biol 13 (1) 15-17 [2017-01-00; online 2016-10-31]

Clinical Proteomics Mass spectrometry [Collaborative] Proteogenomics [Collaborative] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

SHADE AVOIDANCE 4 Is Required for Proper Auxin Distribution in the Hypocotyl

Ge Y, Yan F, Zourelidou M, ..., Schwechheimer C, Tao Y

Plant Physiol. 173 (1) 788-800 [2017-01-00; online 2016-11-21]

Swedish Metabolomics Centre (SMC) [Service]

Year 2016

PubMed DOI Crossref

Aspen phenylpropanoid genes’ expression levels correlate with genets’ tannin richness and vary both in responses to soil nitrogen and associations with phenolic profiles

Decker VHG, Bandau F, Gundale MJ, Cole CT, Albrectsen BR

Tree Physiol - (-) - [2016-12-15; online 2016-12-15]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Dissecting the Metabolic Role of Mitochondria during Developmental Leaf Senescence.

Chrobok D, Law SR, Brouwer B, ..., Gardeström P, Keech O

pmc

Plant Physiol. 172 (4) 2132-2153 [2016-12-00; online 2016-10-21]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6.

Dobrenel T, Mancera-Martínez E, Forzani C, ..., Hanson J, Meyer C

pmc

Front Plant Sci 7 (-) 1611 [2016-11-07; online 2016-11-07]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure.

Papazian S, Khaling E, Bonnet C, ..., Blande JD, Albrectsen BR

pmc

Plant Physiol. 172 (3) 2057-2078 [2016-11-00; online 2016-10-21]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Estrogen Receptor α Promotes Breast Cancer by Reprogramming Choline Metabolism.

Jia M, Andreassen T, Jensen L, ..., Moestue SA, Dahlman-Wright K

Cancer Res. 76 (19) 5634-5646 [2016-10-01; online 2016-07-28]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Metabolomic Quality Assessment of EDTA Plasma and Serum Samples.

Malm L, Tybring G, Moritz T, Landin B, Galli J

Biopreserv Biobank 14 (5) 416-423 [2016-10-00; online 2016-06-27]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Direct acquisition of organic N by white clover even in the presence of inorganic N

Czaban W, Jämtgård S, Näsholm T, ..., Nicolaisen M, Fomsgaard IS

Plant Soil 407 (1-2) 91-107 [2016-10-00; online 2016-04-15]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Dioxygenase-encoding AtDAO1 gene controls IAA oxidation and homeostasis in Arabidopsis.

Porco S, Pěnčík A, Rashed A, ..., Bennett MJ, Ljung K

pmc

Proc. Natl. Acad. Sci. U.S.A. 113 (39) 11016-11021 [2016-09-27; online 2016-09-22]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Loss of ncm(5) and mcm(5) wobble uridine side chains results in an altered metabolic profile.

Karlsborn T, Mahmud AK, Tükenmez H, Byström AS

pmc

Metabolomics 12 (12) 177 [2016-09-27; online 2016-09-27]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Overlap in serum metabolic profiles between non-related diseases: Implications for LC-MS metabolomics biomarker discovery.

Lindahl A, Forshed J, Nordström A

Biochem. Biophys. Res. Commun. 478 (3) 1472-1477 [2016-09-23; online 2016-09-02]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Metabolic Profiling of Systemic Lupus Erythematosus and Comparison with Primary Sjögren's Syndrome and Systemic Sclerosis.

Bengtsson AA, Trygg J, Wuttge DM, ..., Rännar S, Lundstedt T

pmc

PLoS ONE 11 (7) e0159384 [2016-07-21; online 2016-07-21]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Quantitative Auxin Metabolite Profiling Using Stable Isotope Dilution UHPLC-MS/MS

Novák O, Pěnčík A, Blahoušek O, Ljung K

Curr Protoc Plant Biol - (-) 419-430 [2016-06-10; online 2016-06-10]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

The Effects of High Steady State Auxin Levels on Root Cell Elongation in Brachypodium.

Pacheco-Villalobos D, Díaz-Moreno SM, van der Schuren A, ..., Bulone V, Hardtke CS

Plant Cell - (-) - [2016-05-05; online 2016-05-05]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Metabolomics study of fatigue in patients with rheumatoid arthritis naïve to biological treatment.

Surowiec I, Gjesdal CG, Jonsson G, ..., Trygg J, Omdal R

Rheumatol. Int. 36 (5) 703-711 [2016-05-00; online 2016-01-25]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Reduced mitochondrial malate dehydrogenase activity has a strong effect on photorespiratory metabolism as revealed by 13C labelling.

Lindén P, Keech O, Stenlund H, Gardeström P, Moritz T

pmc

J. Exp. Bot. 67 (10) 3123-3135 [2016-05-00; online 2016-02-19]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

TOR Signaling and Nutrient Sensing.

Dobrenel T, Caldana C, Hanson J, ..., Veit B, Meyer C

Annu Rev Plant Biol 67 (-) 261-285 [2016-04-29; online 2016-02-26]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

PGC-1α Coordinates Mitochondrial Respiratory Capacity and Muscular Fatty Acid Uptake via Regulation of VEGF-B.

Mehlem A, Palombo I, Wang X, ..., Eriksson U, Falkevall A

Diabetes 65 (4) 861-873 [2016-04-00; online 2016-01-30]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Multi-platform mass spectrometry analysis of the CSF and plasma metabolomes of rigorously matched amyotrophic lateral sclerosis, Parkinson's disease and control subjects.

Wuolikainen A, Jonsson P, Ahnlund M, ..., Andersen PM, Trupp M

Mol Biosyst 12 (4) 1287-1298 [2016-04-00; online 2016-02-18]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Local auxin metabolism regulates environment-induced hypocotyl elongation

Zheng Z, Guo Y, Novák O, ..., Noel JP, Chory J

NPLANTS 2 (4) 16025 [2016-03-21; online 2016-03-21]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Rat Prostate Tumor Cells Progress in the Bone Microenvironment to a Highly Aggressive Phenotype.

Bergström SH, Rudolfsson SH, Bergh A

pmc

Neoplasia 18 (3) 152-161 [2016-03-00; online 2016-03-20]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Postprandial metabolomics: A pilot mass spectrometry and NMR study of the human plasma metabolome in response to a challenge meal.

Karimpour M, Surowiec I, Wu J, ..., Zivkovic AM, Nording ML

Anal. Chim. Acta 908 (-) 121-131 [2016-02-18; online 2016-01-31]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development.

Obudulu O, Bygdell J, Sundberg B, ..., Trygg J, Wingsle G

pmc

BMC Genomics 17 (-) 119 [2016-02-18; online 2016-02-18]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Tissue sample stability: thawing effect on multi-organ samples

Torell F, Bennett K, Cereghini S, ..., Trygg J, Lundstedt T

Metabolomics 12 (2) - [2016-02-00; online 2015-12-31]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Metabolites in Blood for Prediction of Bacteremic Sepsis in the Emergency Room.

Kauppi AM, Edin A, Ziegler I, ..., Strålin K, Johansson A

pmc

PLoS ONE 11 (1) e0147670 [2016-01-22; online 2016-01-22]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light.

Pedmale UV, Huang SS, Zander M, ..., Ecker JR, Chory J

pmc mid

Cell 164 (1-2) 233-245 [2016-01-14; online 2016-01-05]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Serum Trimethylamine-N-Oxide Is Strongly Related to Renal Function and Predicts Outcome in Chronic Kidney Disease.

Missailidis C, Hällqvist J, Qureshi AR, ..., Stenvinkel P, Bergman P

pmc

PLoS ONE 11 (1) e0141738 [2016-01-11; online 2016-01-11]

Swedish Metabolomics Centre (SMC) [Collaborative]

PubMed DOI Crossref

Oxylipins, endocannabinoids, and related compounds in human milk: Levels and effects of storage conditions.

Wu J, Gouveia-Figueira S, Domellöf M, Zivkovic AM, Nording ML

Prostaglandins Other Lipid Mediat. 122 (-) 28-36 [2016-01-00; online 2015-12-15]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Increased lanosterol turnover: a metabolic burden for daunorubicin-resistant leukemia cells.

Stäubert C, Krakowsky R, Bhuiyan H, ..., Broom O, Nordström A

pmc

Med. Oncol. 33 (1) 6 [2016-01-00; online 2015-12-25]

Swedish Metabolomics Centre (SMC) [Service]

Year 2013

PubMed DOI Crossref

Plasma and erythrocyte glutathione peroxidase activity, serum selenium concentration, and plasma total antioxidant capacity in cats with IRIS stages I-IV chronic kidney disease.

Krofič Žel M, Tozon N, Nemec Svete A

pmc

J. Vet. Intern. Med. 28 (1) 130-136 [2013-12-16; online 2013-12-16]

Swedish Metabolomics Centre (SMC) [Service]