Spatial Proteomics

SciLifeLab Infrastructure Unit Since 2013. Previously called "Cell Profiling".

Started: 2013

Ended: Current

63 publications

Year 2021

Subcellular proteomics
Christopher JA, Stadler C, Martin CE, ..., Emili A, Lilley KS
Nat Rev Methods Primers 1 (1) - [2021-12-00; online 2021-04-29]
Spatial Proteomics

Year 2020

Year 2019

Immune-informed mucin hydrogels evade fibrotic foreign body response in vivo
Yan H, Seignez C, Hjorth M, ..., Phillipson M, Crouzier T
- - (-) - [2019-02-19; online 2019-02-19]
Spatial Proteomics [Service]
Spatiotemporal dissection of the cell cycle regulated human proteome
Mahdessian D, Sullivan D, Danielsson F, ..., Lindskog C, Lundberg E
- - (-) - [2019-02-07; online 2019-02-07]
Bioinformatics Compute and Storage [Service] Spatial Proteomics [Collaborative]

Year 2018

Myopathy With SQSTM1 and TIA1 Variants: Clinical and Pathological Features.
Niu Z, Pontifex CS, Berini S, ..., Pfeffer G, Milone M
Front Neurol 9 (-) 147 [2018-03-19; online 2018-03-19]
Spatial Proteomics [Service]

Year 2017

Year 2016

A proposal for validation of antibodies.
Uhlen M, Bandrowski A, Carr S, ..., Snyder M, Yamamoto T
Nat. Methods 13 (10) 823-827 [2016-10-00; online 2016-09-07]
Spatial Proteomics [Collaborative]
Systems Proteomics View of the Endogenous Human Claudin Protein Family.
Liu F, Koval M, Ranganathan S, ..., Kelleher NL, Baker MS
J. Proteome Res. 15 (2) 339-359 [2016-02-05; online 2015-12-19]
Spatial Proteomics [Service]

Year 2015

The folate-coupled enzyme MTHFD2 is a nuclear protein and promotes cell proliferation.
Gustafsson Sheppard N, Jarl L, Mahadessian D, ..., Jain M, Nilsson R
Sci Rep 5 (-) 15029 [2015-10-13; online 2015-10-13]
Spatial Proteomics
Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.
Horvatovich P, Lundberg EK, Chen YJ, ..., Paik YK, Hancock WS
J. Proteome Res. 14 (9) 3415-3431 [2015-09-04; online 2015-06-16]
Spatial Proteomics

Year 2014

A chromosome-centric analysis of antibodies directed toward the human proteome using Antibodypedia.
Alm T, von Feilitzen K, Lundberg E, Sivertsson Å, Uhlén M
J. Proteome Res. 13 (3) 1669-1676 [2014-03-07; online 2014-02-19]
Spatial Proteomics
Antibody performance in western blot applications is context-dependent.
Algenäs C, Agaton C, Fagerberg L, ..., Ottosson Takanen J, Hober S
Biotechnol J 9 (3) 435-445 [2014-03-00; online 2014-01-10]
Spatial Proteomics Tissue Profiling
Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins.
Lane L, Bairoch A, Beavis RC, ..., Lundberg E, Omenn GS
J. Proteome Res. 13 (1) 15-20 [2014-01-03; online 2013-12-25]
Spatial Proteomics

Year 2013

Year 2012

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens.
Dengjel J, Høyer-Hansen M, Nielsen MO, ..., Jäättelä M, Andersen JS
Mol. Cell Proteomics 11 (3) M111.014035 [2012-03-00; online 2012-02-09]
Spatial Proteomics
Antibody-based protein profiling of the human chromosome 21.
Uhlén M, Oksvold P, Älgenäs C, ..., Kondo T, Sivertsson Å
Mol. Cell Proteomics 11 (3) M111.013458 [2012-03-00; online 2011-11-02]
Spatial Proteomics Tissue Profiling
Characterization of MRFAP1 turnover and interactions downstream of the NEDD8 pathway.
Larance M, Kirkwood KJ, Xirodimas DP, ..., Uhlen M, Lamond AI
Mol. Cell Proteomics 11 (3) M111.014407 [2012-03-00; online 2011-11-01]
Spatial Proteomics

Year 2011

Mapping the subcellular protein distribution in three human cell lines.
Fagerberg L, Stadler C, Skogs M, ..., Uhlén M, Lundberg E
J. Proteome Res. 10 (8) 3766-3777 [2011-08-05; online 2011-06-17]
Spatial Proteomics
Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods.
Jakobsen L, Vanselow K, Skogs M, ..., Hyman AA, Andersen JS
EMBO J. 30 (8) 1520-1535 [2011-04-20; online 2011-03-15]
Spatial Proteomics

Year 2010

Towards a knowledge-based Human Protein Atlas.
Uhlen M, Oksvold P, Fagerberg L, ..., Björling L, Ponten F
Nat. Biotechnol. 28 (12) 1248-1250 [2010-12-00; online 2010-12-09]
Spatial Proteomics
Creation of an antibody-based subcellular protein atlas.
Lundberg E, Uhlén M
Proteomics 10 (22) 3984-3996 [2010-11-00; online 2010-07-22]
Spatial Proteomics
A single fixation protocol for proteome-wide immunofluorescence localization studies.
Stadler C, Skogs M, Brismar H, Uhlén M, Lundberg E
J Proteomics 73 (6) 1067-1078 [2010-04-18; online 2009-11-10]
Spatial Proteomics