SciLifeLab Infrastructure Units Publications

Publications by year

The 20 most recent publications

Large-scale proximity extension assay reveals CSF midkine and DOPA decarboxylase as supportive diagnostic biomarkers for Parkinson's disease.

Paslawski W, Khosousi S, Hertz E, ..., Boxer A, Svenningsson P

Transl Neurodegener 12 (1) 42 [2023-09-04; online 2023-09-04]

Affinity Proteomics Stockholm [Service]

DOI Crossref

Distinct molecular targets of ProEGCG from EGCG and superior inhibition of angiogenesis signaling pathways for treatment of endometriosis

Hung SW, Gaetani M, Li Y, ..., Zubarev RA, Wang CC

Journal of Pharmaceutical Analysis - (-) - [2023-09-00; online 2023-09-00]

Chemical Proteomics [Service]

PubMed DOI Crossref

Apilactobacillus kunkeei releases RNA-associated membrane vesicles and proteinaceous nanoparticles.

Seeger C, Dyrhage K, Näslund K, Andersson SGE

Microlife 4 (-) uqad037 [2023-08-29; online 2023-08-29]

Cryo-EM [Service]

PubMed DOI Crossref

Structure and dynamics of differential ligand binding in the human ρ-type GABAA receptor.

Cowgill J, Fan C, Haloi N, ..., Howard RJ, Lindahl E

Neuron - (-) - [2023-08-25; online 2023-08-25]

Cryo-EM [Service]

PubMed DOI Crossref

Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae).

Steffen K, Proux-Wéra E, Soler L, ..., Sundh J, Cárdenas P

G3 (Bethesda) - (-) - [2023-08-24; online 2023-08-24]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Long-read whole-genome analysis of human single cells.

Hård J, Mold JE, Eisfeldt J, ..., Michaëlsson J, Ameur A

Nat Commun 14 (1) 5164 [2023-08-24; online 2023-08-24]

NGI Long read [Technology development] NGI Uppsala (Uppsala Genome Center) [Technology development] National Genomics Infrastructure [Technology development]

PubMed DOI Crossref

Multi-modal single cell sequencing of B cells in primary Sjögren's Syndrome.

Arvidsson G, Czarnewski P, Johansson A, ..., Nordmark G, Syvänen AC

Arthritis & rheumatology (Hoboken, N.J.) - (-) - [2023-08-23; online 2023-08-23]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Bacterial bioindicators enable biological status classification along the continental Danube river.

Fontaine L, Pin L, Savio D, ..., Farnleitner AH, Eiler A

Commun Biol 6 (1) 862 [2023-08-18; online 2023-08-18]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

An idiosyncratic zonated stroma encapsulates desmoplastic liver metastases and originates from injured liver.

Fernández Moro C, Geyer N, Harrizi S, ..., Bozóky B, Gerling M

Nat Commun 14 (1) 5024 [2023-08-18; online 2023-08-18]

CRISPR Functional Genomics [Service]

PubMed DOI Crossref

Amyloids of α-Synuclein Promote Chemical Transformations of Neuronal Cell Metabolites.

Horvath I, Mohamed KA, Kumar R, Wittung-Stafshede P

Int J Mol Sci 24 (16) - [2023-08-16; online 2023-08-16]

Swedish Metabolomics Centre (SMC) [Service]

DOI Crossref

Pantothenate Kinase 4 controls efficient skeletal muscle energy substrate metabolism via acetyl-CoA

Miranda-Cervantes A, Fritzen AM, Raun SH, ..., Richter EA, Kleinert M

- - (-) - [2023-08-14; online 2023-08-14]

Swedish Metabolomics Centre (SMC) [Service]

PubMed DOI Crossref

Phage T3 overcomes the BREX defense through SAM cleavage and inhibition of SAM synthesis by SAM lyase.

Andriianov A, Trigüis S, Drobiazko A, ..., Severinov K, Isaev A

Cell Rep 42 (8) 112972 [2023-08-13; online 2023-08-13]

Cryo-EM [Service]

PubMed DOI Crossref

Complementarity-determining region clustering may cause CAR-T cell dysfunction.

Sarén T, Saronio G, Marti Torrell P, ..., Yu D, Essand M

Nat Commun 14 (1) 4732 [2023-08-10; online 2023-08-10]

Drug Discovery and Development (DDD) [Service]

PubMed DOI Crossref

Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe.

Mattila TM, Svensson EM, Juras A, ..., Malmström H, Jakobsson M

Commun Biol 6 (1) 793 [2023-08-09; online 2023-08-09]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A novel quantitative targeted analysis of X-chromosome inactivation (XCI) using nanopore sequencing.

Johansson J, Lidéus S, Höijer I, ..., Bondeson ML, Wilbe M

Sci Rep 13 (1) 12856 [2023-08-08; online 2023-08-08]

NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Altered gut microbiota community structure and correlated immune system changes in dibutyl phthalate exposed mice.

Almamoun R, Pierozan P, Manoharan L, Karlsson O

Ecotoxicol Environ Saf 262 (-) 115321 [2023-08-05; online 2023-08-05]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Single-cell RNA analysis reveals cell-intrinsic functions of CAR-T cells correlating with response in a phase II study of lymphoma patients.

Sarén T, Ramachandran M, Gammelgård G, ..., Enblad G, Essand M

Clin. Cancer Res. - (-) - [2023-08-04; online 2023-08-04]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

The development of blood protein profiles in extremely preterm infants follows a stereotypic evolution pattern.

Zhong W, Danielsson H, Brusselaers N, ..., Uhlén M, Hellström A

Commun Med (Lond) 3 (1) 107 [2023-08-02; online 2023-08-02]

Affinity Proteomics Stockholm [Service]

PubMed DOI Crossref

Genetic insights into resting heart rate and its role in cardiovascular disease.

van de Vegte YJ, Eppinga RN, van der Ende MY, ..., Verweij N, van der Harst P

Nat Commun 14 (1) 4646 [2023-08-02; online 2023-08-02]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Alternating L4 loop architecture of the bacterial polysaccharide co-polymerase WzzE.

Wiseman B, Widmalm G, Högbom M

Commun Biol 6 (1) 802 [2023-08-02; online 2023-08-02]

Cryo-EM [Service]