SciLifeLab Infrastructure Units Publications

Publications

The 10 most recent publications

Microbial functional genes are driven by gradients in sediment stoichiometry, oxygen, and salinity across the Baltic benthic ecosystem.

Broman E, Izabel-Shen D, Rodríguez-Gijón A, ..., Garcia SL, Nascimento FJA

Microbiome 10 (1) 126 [2022-08-15; online 2022-08-15]

NGI Short read [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Single-cell multi-omics of human preimplantation embryos demonstrates susceptibility to glucocorticoids.

Zhao C, Biondic S, Vandal K, ..., Reik W, Petropoulos S

Genome Res. - (-) - [2022-08-10; online 2022-08-10]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Single cell [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Metatranscriptomics of Nasopharyngeal Microbiota and Host Distinguish between Pneumonia and Health.

Nannapaneni P, Sundh J, Prast-Nielsen S, ..., Naucler P, Henriques-Normark B

Am. J. Respir. Crit. Care Med. - (-) - [2022-08-10; online 2022-08-10]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Nuclear-specific gene expression in heterokaryons of the filamentous ascomycete Neurospora tetrasperma.

Meunier C, Darolti I, Reimegård J, Mank JE, Johannesson H

Proc. Biol. Sci. 289 (1980) 20220971 [2022-08-10; online 2022-08-10]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

A multi-layer functional genomic analysis to understand noncoding genetic variation in lipids.

Ramdas S, Judd J, Graham SE, ..., Zhu X, Brown CD

Am. J. Hum. Genet. 109 (8) 1366-1387 [2022-08-04; online 2022-08-06]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Spatially resolved clonal copy number alterations in benign and malignant tissue.

Erickson A, He M, Berglund E, ..., Lamb AD, Lundeberg J

Nature 608 (7922) 360-367 [2022-08-00; online 2022-08-10]

NGI Short read [Service] NGI Single cell [Service] NGI Spatial omics [Service] National Genomics Infrastructure [Service]

DOI Crossref

Simple and rapid quantification of cetirizine, venlafaxine, and O-desmethylvenlafaxine in human breast milk, and metformin in human milk and plasma with UHPLC-MS/MS

Wegler C, Saleh A, Lindqvist A, ..., Smeraglia J, Baranczewski P

Journal of Chromatography B 1205 (-) 123340 [2022-08-00; online 2022-08-00]

Drug Discovery and Development (DDD) [Collaborative]

PubMed DOI Crossref

Inputs of Terrestrial Dissolved Organic Matter Enhance Bacterial Production and Methylmercury Formation in Oxic Coastal Water.

Rodríguez J, Andersson A, Björn E, ..., Skrobonja A, Rowe O

Front Microbiol 13 (-) 809166 [2022-07-27; online 2022-07-27]

NGI Short read [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells.

Khatri B, Tessneer KL, Rasmussen A, ..., Nordmark G, Lessard CJ

Nat Commun 13 (1) 4287 [2022-07-27; online 2022-07-27]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Structures of Atm1 provide insight into [2Fe-2S] cluster export from mitochondria.

Li P, Hendricks AL, Wang Y, ..., Wang K, Gourdon P

Nat Commun 13 (1) 4339 [2022-07-27; online 2022-07-27]

Cryo-EM