SciLifeLab Infrastructure Units Publications

Publications by year

The 20 most recent publications

Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles.

Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C

Life Sci. Alliance 7 (2) - [2024-02-00; online 2023-11-20]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

PubMed DOI Crossref

Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics.

Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J

Science 382 (6675) eadf8486 [2023-12-08; online 2023-12-08]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Gut bacteria at 6 months of age are associated with immune cell status in 1‐year‐old children

Nilsen M, Nygaard UC, Brodin P, ..., Vettukattil R, Rudi K

Scand J Immunol - (-) - [2023-12-07; online 2023-12-07]

Cellular Immunomonitoring [Collaborative]

PubMed DOI Crossref

Three-dimensional reconstruction of interstitial extracellular vesicles in human liver as determined by electron tomography.

Olofsson Bagge R, Berndtsson J, Urzì O, ..., Micaroni M, Crescitelli R

J Extracell Vesicles 12 (12) e12380 [2023-12-00; online 2023-11-27]

Integrated Microscopy Technologies Gothenburg [Collaborative]

PubMed DOI Crossref

The genetic legacy of the expansion of Bantu-speaking peoples in Africa.

Fortes-Lima CA, Burgarella C, Hammarén R, ..., Bostoen K, Schlebusch CM

Nature - (-) - [2023-11-29; online 2023-11-29]

NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Pathogenic DDX41 variants, possible response predictors to low-dose melphalan in hypo- and normocellular MDS and AML.

Nyquist OE, Dalgaard J, Spetalen S, ..., Baliakas P, Dybedal I

Br. J. Haematol. - (-) - [2023-11-28; online 2023-11-28]

Clinical Genomics Uppsala [Collaborative]

PubMed DOI Crossref

Ultralight Ultrafast Enzymes.

Zhang X, Meng Z, Beusch C, ..., Gaetani M, Zubarev R

Angew. Chem. Int. Ed. Engl. - (-) e202316488 [2023-11-27; online 2023-11-27]

Chemical Proteomics [Technology development]

PubMed DOI Crossref

Metabolomic profiles of intact tissues reflect clinically relevant prostate cancer subtypes.

Dudka I, Lundquist K, Wikström P, Bergh A, Gröbner G

J Transl Med 21 (1) 860 [2023-11-27; online 2023-11-27]

Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

Infants' looking preferences for social versus non-social objects reflect genetic variation.

Portugal AM, Viktorsson C, Taylor MJ, ..., Ronald A, Falck-Ytter T

Nat Hum Behav - (-) - [2023-11-27; online 2023-11-27]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Evaluation of circulating plasma proteins in breast cancer using Mendelian randomisation.

Mälarstig A, Grassmann F, Dahl L, ..., Czene K, Hedman ÅK

Nat Commun 14 (1) 7680 [2023-11-24; online 2023-11-24]

Affinity Proteomics Uppsala [Service]

PubMed DOI Crossref

Combined NMR and molecular dynamics conformational filter identifies unambiguously dynamic ensembles of Dengue protease NS2B/NS3pro.

Agback T, Lesovoy D, Han X, ..., Achour A, Agback P

Commun Biol 6 (1) 1193 [2023-11-24; online 2023-11-24]

Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

The heat shock protein LarA activates the Lon protease in response to proteotoxic stress.

Omnus DJ, Fink MJ, Kallazhi A, ..., Landreh M, Jonas K

Nat Commun 14 (1) 7636 [2023-11-22; online 2023-11-22]

Global Proteomics and Proteogenomics [Service]

PubMed DOI Crossref

Covid-19 vaccine effectiveness against post-covid-19 condition among 589 722 individuals in Sweden: population based cohort study.

Lundberg-Morris L, Leach S, Xu Y, ..., Nyberg F, Bygdell M

BMJ 383 (-) e076990 [2023-11-22; online 2023-11-22]

Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

Clinical, genetic and structural delineation of RPL13-related spondyloepimetaphyseal dysplasia suggest extra-ribosomal functions of eL13.

Jacob P, Lindelöf H, Rustad CF, ..., Girisha KM, Grigelioniene G

npj Genom. Med. 8 (1) 39 [2023-11-22; online 2023-11-22]

Clinical Genomics Stockholm [Service]

DOI Crossref

FAIR+E pathogen data for surveillance and research: lessons from COVID-19

Neves A, Cuesta I, Hjerde E, ..., Waheed Z, Blomberg N

Front Public Health 11 (-) - [2023-11-21; online 2023-11-21]

Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Structures of theStaphylococcus aureusribosome inhibited by fusidic acid and fusidic acid cyclopentane

González-López A, Larsson DSD, Koripella RK, ..., Sanyal S, Selmer M

- - (-) - [2023-11-20; online 2023-11-20]

Cryo-EM [Service]

PubMed DOI Crossref

Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.

Karki S, Javanainen M, Rehan S, ..., Happonen L, Paavilainen V

EMBO Rep. - (-) e57910 [2023-11-20; online 2023-11-20]

Structural Proteomics [Collaborative]

PubMed DOI Crossref

Glycan complexity and heterogeneity of glycoproteins in somatic extracts and secretome of the infective stage of the helminth Fasciola hepatica.

De Marco Verissimo C, Cwiklinski K, Nilsson J, ..., Karlsson NG, Dalton JP

Mol. Cell Proteomics - (-) 100684 [2023-11-20; online 2023-11-20]

Glycoproteomics [Service]

PubMed DOI Crossref

Dysregulations in hemostasis, metabolism, immune response, and angiogenesis in post-acute COVID-19 syndrome with and without postural orthostatic tachycardia syndrome: a multi-omic profiling study.

Mahdi A, Zhao A, Fredengren E, ..., Pernow J, Ståhlberg M

Sci Rep 13 (1) 20230 [2023-11-19; online 2023-11-19]

Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Patient-derived xenografts and single-cell sequencing identifies three subtypes of tumor-reactive lymphocytes in uveal melanoma metastases

Karlsson J, Sah VR, Olofsson R, ..., Nilsson LM, Nilsson JA

eLife - (-) - [2023-11-16]

Spatial Proteomics [Service]