SciLifeLab Infrastructure Units Publications

Publications by year

The 20 most recent publications

Revised Diffusion Law Permits Quantitative Nanoscale Characterization of Membrane Organization.

Svobodová B, Št'astný D, Blom H, ..., Hof M, Šachl R

Anal. Chem. 97 (22) 11478-11485 [2025-06-10; online 2025-05-29]

Integrated Microscopy Technologies Stockholm [Collaborative]

Metagenomic insights into the complex viral composition of the enteric RNA virome in healthy and diarrheic calves from Ethiopia.

Bergholm J, Tessema TS, Blomström AL, Berg M

Virol J 22 (1) 188 [2025-06-07; online 2025-06-07]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Antimicrobial resistance and serotype distribution of Salmonella spp. isolated from fresh foods in Cambodia.

Huoy L, Nasirzadeh L, Phan K, ..., Rudloff EB, Boqvist S

J Appl Microbiol - (-) - [2025-06-03; online 2025-06-03]

Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]

PubMed DOI Crossref

Fin Whale as a Sink of Legacy and Emerging Contaminants: First Integrated Chemical Exposomics and Gene Expression Analysis in Cetaceans.

Fossi MC, Limonta G, Baini M, ..., Rosso M, Panti C

Environ. Sci. Technol. - (-) - [2025-06-02; online 2025-06-02]

Exposomics [Collaborative]

PubMed DOI Crossref

Frequent Hybridisation Between Parapatric Lekking Bird-of-Paradise Species.

Thörn F, Müller IA, Soares AER, ..., Blom MPK, Irestedt M

Mol. Ecol. 34 (11) e17780 [2025-06-00; online 2025-04-29]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Diel Bacterioplankton Community Dynamics Under Contrasting Light Regimes.

Papadopoulou S, Linkhorst A, Balmonte JP, ..., Bertilsson S, Székely AJ

Environ Microbiol Rep 17 (3) e70099 [2025-06-00; online 2025-05-09]

NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response.

Fineschi S, Klar J, Lopez Egido JR, ..., Kaden R, Dahl N

Front Immunol 16 (-) 1589589 [2025-05-30; online 2025-05-30]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Plasma membrane labelling efficiency, internalization and partitioning of functionalized fluorescent lipids as a function of lipid structure

Sezgin E

- - (-) - [2025-05-13; online 2025-05-13]

Integrated Microscopy Technologies Stockholm [Service]

PubMed DOI Crossref

Microbial transfer through fecal strings on eggs affects leaf beetle microbiome dynamics.

An Y, Garcia SL, Hambäck PA

mSystems - (-) e0172324 [2025-05-13; online 2025-05-13]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Gut microbiota mediates SREBP-1c-driven hepatic lipogenesis and steatosis in response to zero-fat high-sucrose diet.

Bergentall M, Tremaroli V, Sun C, ..., Nieuwdorp M, Bäckhed F

Mol Metab 97 (-) 102162 [2025-05-07; online 2025-05-07]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Green Listed v2.0: A Web Application for Streamlined Design of Custom CRISPR Screens.

Henkel E, Li Z, Uvehag D, ..., Henkel M, Wermeling F

CRISPR J - (-) - [2025-05-07; online 2025-05-07]

CRISPR Functional Genomics [Technology development] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity.

Xu Y, Lou D, Chen P, ..., Hu Y, Wang J

Dev. Cell - (-) - [2025-05-06; online 2025-05-06]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

External validation of plasma CSF1 as a preoperative prognostic marker in patients with resectable intrahepatic cholangiocarcinoma.

Akiki A, Jacobsson H, Nouairia G, ..., Taflin H, Jansson H

Eur J Surg Oncol 51 (8) 110123 [2025-05-04; online 2025-05-04]

Affinity Proteomics Stockholm [Service]

DOI Crossref

Museum Ecologies

Fredengren C, Ewing A, Owman C, Holmstedt J

Mus. Soc. 23 (1) - [2025-05-01; online 2025-05-01]

Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

High Content Imaging in Drug Discovery

- - (-) - [2025-04-30; online 2025-04-30]

Chemical Biology Consortium Sweden (CBCS) [Technology development]

PubMed DOI Crossref

Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis.

Sreenivasan AP, Vaivade A, Noui Y, ..., Spjuth O, Kultima K

NPJ Digit Med 8 (1) 224 [2025-04-24; online 2025-04-24]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Constraints to gene flow increase the risk of genome erosion in the Ngorongoro Crater lion population.

Dussex N, Jansson I, van der Valk T, ..., E Mjingo E, Spong G

Commun Biol 8 (1) 640 [2025-04-21; online 2025-04-21]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis.

González-López A, Ge X, Larsson DSD, ..., Sanyal S, Selmer M

Nat Commun 16 (1) 3693 [2025-04-18; online 2025-04-18]

Cryo-EM [Service]

PubMed DOI Crossref

Challenging the "Undruggable"─Targeting STAT3 but Identifying Potent TrkA-Targeted Inhibitors.

Iliev P, McCutcheon C, Admas TH, ..., Frank DA, Page BDG

J. Med. Chem. - (-) - [2025-04-17; online 2025-04-17]

Chemical Biology Consortium Sweden (CBCS) [Collaborative]

PubMed DOI Crossref

In vivo composition of the mitochondrial nucleoid in mice.

García-Villegas R, Odenthal F, Giannoula Y, ..., Levander F, Larsson NG

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research - (-) 119955 [2025-04-15; online 2025-04-15]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]