Clinical Genomics Gothenburg (52 publications)

Publications

SciLifeLab Infrastructure Unit Since 2016.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2016

Ended: Current

Year 2022

Fusion transcript analysis reveals slower response kinetics than multiparameter flow cytometry in childhood acute myeloid leukaemia.

Karlsson L, Nyvold CG, Soboli A, ..., Abrahamsson J, Fogelstrand L

Int J Lab Hematol 44 (6) 1094-1101 [2022-12-00; online 2022-08-02]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

A comprehensive characterisation of patients diagnosed with post-COVID-19 condition in Sweden 16 months after the introduction of the ICD-10 diagnosis code (U09.9): a population-based cohort study.

Bygdell M, Leach S, Lundberg L, ..., Gisslén M, Nyberg F

Int J Infect Dis - (-) - [2022-11-18; online 2022-11-18]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Self-reported symptom severity, general health, and impairment in post-acute phases of COVID-19: retrospective cohort study of Swedish public employees.

Larsson SB, von Feilitzen GS, Andersson ME, ..., Nilsson S, Sigström R

Sci Rep 12 (1) 19818 [2022-11-17; online 2022-11-17]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Dominantly inherited myosin IIa myopathy caused by aberrant splicing of MYH2.

Hedberg-Oldfors C, Elíasdóttir Ó, Geijer M, Lindberg C, Oldfors A

BMC Neurol 22 (1) 428 [2022-11-15; online 2022-11-15]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Dietary restriction and medical therapy drive PPARα-regulated improvements in early diabetic kidney disease in male rats.

Martin WP, Nair M, Chuah YHD, ..., le Roux CW, Docherty NG

Clin Sci (Lond) 136 (21) 1485-1511 [2022-11-11; online 2022-10-20]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

The ESSENCE-Questionnaire in Medical Records Screening for Neurodevelopmental Symptoms/Problems: Utility and Clinical Validity.

Landgren V, Raanan Soltis Z, Svensson E, ..., Landgren M, Knez R

Neuropsychiatr Dis Treat 18 (-) 2559-2574 [2022-11-03; online 2022-11-03]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Novel TPR::ROS1 Fusion Gene Activates MAPK, PI3K and JAK/STAT Signaling in an Infant-type Pediatric Glioma.

Deland L, Keane S, Bontell TO, ..., Sabel M, Abel F

Cancer Genomics Proteomics 19 (6) 711-726 [2022-11-01; online 2022-11-01]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Assessment of the genetic and clinical determinants of hip fracture risk: Genome-wide association and Mendelian randomization study.

Nethander M, Coward E, Reimann E, ..., Hveem K, Ohlsson C

Cell Reports Medicine 3 (10) 100776 [2022-10-18; online 2022-10-20]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Implementing precision medicine in a regionally organized healthcare system in Sweden.

Fioretos T, Wirta V, Cavelier L, ..., Edsjö A, Rosenquist R

Nat. Med. 28 (10) 1980-1982 [2022-10-00; online 2022-09-20]

Clinical Genomics Gothenburg [Service] Clinical Genomics Linköping [Service]

PubMed DOI Crossref

Multifocal Neuroblastoma and Central Hypoventilation in An Infant with Germline ALK F1174I Mutation.

Djos A, Treis D, Fransson S, ..., Kogner P, Martinsson T

Diagnostics 12 (9) - [2022-09-19; online 2022-09-19]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Treatment of periprosthetic joint infections guided by minimum biofilm eradication concentration (MBEC) in addition to minimum inhibitory concentration (MIC): protocol for a prospective randomised clinical trial.

Tillander JAN, Rilby K, Svensson Malchau K, ..., Rolfson O, Trobos M

BMJ Open 12 (9) e058168 [2022-09-15; online 2022-09-15]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

An induced pluripotent stem cell t(7;12)(q36;p13) acute myeloid leukemia model shows high expression of MNX1 and a block in differentiation of the erythroid and megakaryocytic lineages.

Nilsson T, Waraky A, Östlund A, ..., Abrahamsson J, Palmqvist L

Int. J. Cancer 151 (5) 770-782 [2022-09-01; online 2022-06-03]

Bioinformatics Compute and Storage [Service] Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Microbial and human transcriptome in vaginal fluid at midgestation: Association with spontaneous preterm delivery.

Wikström T, Abrahamsson S, Bengtsson-Palme J, ..., Valentin L, Hagberg H

Clin Transl Med 12 (9) e1023 [2022-09-00; online 2022-09-15]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Amplification of CDK4 and MDM2: a detailed study of a high-risk neuroblastoma subgroup.

Martinez-Monleon A, Kryh Öberg H, Gaarder J, ..., Fransson S, Martinsson T

Sci Rep 12 (1) 12420 [2022-07-20; online 2022-07-20]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Cross-sectional associations between the gut microbe Ruminococcus gnavus and features of the metabolic syndrome.

Grahnemo L, Nethander M, Coward E, ..., Hveem K, Ohlsson C

Lancet Diabetes Endocrinol 10 (7) 481-483 [2022-07-00; online 2022-06-01]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Immunological differences between heart- and kidney-transplanted children: a cross-sectional study.

Ekman-Joelsson BM, Brandström P, Allén M, ..., Mellgren K, Ekwall O

Cardiol Young - (-) 1-6 [2022-06-24; online 2022-06-24]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

C1QTNF3 is Upregulated During Subcutaneous Adipose Tissue Remodeling and Stimulates Macrophage Chemotaxis and M1-Like Polarization.

Micallef P, Vujičić M, Wu Y, ..., Cardell SL, Wernstedt Asterholm I

Front Immunol 13 (-) 914956 [2022-06-02; online 2022-06-02]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach.

Alves G, Ogurtsov A, Karlsson R, ..., Moore ERB, Yu YK

J. Am. Soc. Mass Spectrom. 33 (6) 917-931 [2022-06-01; online 2022-05-02]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Childhood overweight and risk of obesity-related adult cancer in men.

Célind J, Bygdell M, Martikainen J, Ohlsson C, Kindblom JM

Cancer Commun (Lond) 42 (6) 576-579 [2022-06-00; online 2022-04-08]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Birth weight and young adult body mass index for predicting the risk of developing adult heart failure in men.

Bygdell M, Ohlsson C, Lilja L, ..., Rosengren A, Kindblom JM

Eur J Prev Cardiol 29 (6) 971-978 [2022-05-06; online 2021-12-16]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Stratification of COVID-19 patients based on quantitative immune-related gene expression in whole blood.

Persson J, Andersson B, van Veen S, ..., Andersson LM, Harandi AM

Mol. Immunol. 145 (-) 17-26 [2022-05-00; online 2022-03-04]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Polymorphisms in alpha 7 nicotinic acetylcholine receptor gene, CHRNA7, and its partially duplicated gene, CHRFAM7A, associate with increased inflammatory response in human peripheral mononuclear cells.

Pattanaik B, Hammarlund M, Mjörnstedt F, ..., Bergström G, Johansson ME

FASEB J. 36 (5) e22271 [2022-05-00; online 2022-03-29]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

ADP-ribosylating adjuvant reveals plasticity in cDC1 cells that drive mucosal Th17 cell development and protection against influenza virus infection.

Arabpour M, Lebrero-Fernandez C, Schön K, ..., Agace W, Lycke N

Mucosal Immunol 15 (4) 745-761 [2022-04-00; online 2022-04-13]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

A Study Protocol for Validation and Implementation of Whole-Genome and -Transcriptome Sequencing as a Comprehensive Precision Diagnostic Test in Acute Leukemias.

Berglund E, Barbany G, Orsmark-Pietras C, ..., Fioretos T, Rosenquist R

Front Med (Lausanne) 9 (-) 842507 [2022-03-24; online 2022-03-24]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Deficits in attention, motor control and perception childhood to age 30 years: prospective case-control study of outcome predictors.

Landgren V, Fernell E, Gillberg C, Landgren M, Johnson M

BMJ Open 12 (3) e054424 [2022-03-17; online 2022-03-17]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Optimization of cerebrospinal fluid microbial DNA metagenomic sequencing diagnostics.

Olausson J, Brunet S, Vracar D, ..., Jakobsson HE, Tang KW

Sci Rep 12 (1) 3378 [2022-03-01; online 2022-03-01]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

TC-hunter: identification of the insertion site of a transgenic gene within the host genome.

Börjesson V, Martinez-Monleon A, Fransson S, ..., Milosevic J, López MD

BMC Genomics 23 (1) 149 [2022-02-20; online 2022-02-20]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Scavenger receptor CD36 governs recruitment of myeloid cells to the blood-CSF barrier after stroke in neonatal mice.

Rayasam A, Mottahedin A, Faustino J, Mallard C, Vexler ZS

J Neuroinflammation 19 (1) 47 [2022-02-11; online 2022-02-11]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

PΨFinder: a practical tool for the identification and visualization of novel pseudogenes in DNA sequencing data.

Abrahamsson S, Eiengård F, Rohlin A, Dávila López M

BMC Bioinformatics 23 (1) 59 [2022-02-03; online 2022-02-03]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Proteomic characterisation of polyglucosan bodies in skeletal muscle in RBCK1 deficiency.

Thomsen C, Malfatti E, Jovanovic A, ..., Lindberg C, Oldfors A

Neuropathol Appl Neurobiol 48 (1) e12761 [2022-02-00; online 2021-09-12]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Genetically proxied therapeutic inhibition of antihypertensive drug targets and risk of common cancers: A mendelian randomization analysis.

Yarmolinsky J, Díez-Obrero V, Richardson TG, ..., Martin RM, Moreno V

PLoS Med. 19 (2) e1003897 [2022-02-00; online 2022-02-03]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Medications Activating Tubular Fatty Acid Oxidation Enhance the Protective Effects of Roux-en-Y Gastric Bypass Surgery in a Rat Model of Early Diabetic Kidney Disease.

Martin WP, Chuah YHD, Abdelaal M, ..., le Roux CW, Docherty NG

Front Endocrinol (Lausanne) 12 (-) 757228 [2022-01-26; online 2022-01-26]

Clinical Genomics Gothenburg [Service] Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

Sustained Response to Entrectinib in an Infant With a Germline ALKAL2 Variant and Refractory Metastatic Neuroblastoma With Chromosomal 2p Gain and Anaplastic Lymphoma Kinase and Tropomyosin Receptor Kinase Activation.

Treis D, Umapathy G, Fransson S, ..., Martinsson T, Kogner P

JCO Precision Oncology 6 (6) e2100271 [2022-01-00; online 2022-01-28]

Clinical Genomics Gothenburg [Service] Clinical Genomics Stockholm [Service]

PubMed DOI Crossref

A genome-wide scan to locate regions associated with familial vesicoureteral reflux.

Bartik Z, Sillén U, Östensson M, ..., Sjöberg R, Martinsson T

Exp Ther Med 23 (1) 92 [2022-01-00; online 2021-11-28]

Clinical Genomics Gothenburg [Service]

Year 2021

PubMed DOI Crossref

Single-cell atlas reveals meningeal leukocyte heterogeneity in the developing mouse brain.

Zelco A, Börjesson V, de Kanter JK, ..., Holstege FCP, Wang X

Genes Dev. 35 (15-16) 1190-1207 [2021-08-01; online 2021-07-22]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Comparison of RNA- and DNA-based methods for measurable residual disease analysis in NPM1-mutated acute myeloid leukemia.

Pettersson L, Johansson Alm S, Almstedt A, ..., Fogelstrand L, Ehinger M

Int J Lab Hematol 43 (4) 664-674 [2021-08-00; online 2021-05-30]

Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli, and Candida albicans in Blood.

Kondori N, Kurtovic A, Piñeiro-Iglesias B, ..., Moore ERB, Karlsson R

Front. Cell. Infect. Microbiol. 11 (-) 634215 [2021-07-26; online 2021-07-26]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen Neoehrlichia mikurensis.

Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C

Microorganisms 9 (7) - [2021-07-13; online 2021-07-13]

Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

ALK ligand ALKAL2 potentiates MYCN-driven neuroblastoma in the absence of ALK mutation.

Borenäs M, Umapathy G, Lai WY, ..., Hallberg B, Palmer RH

EMBO J. 40 (3) e105784 [2021-02-01; online 2021-01-07]

Clinical Genomics Gothenburg [Collaborative]

Year 2020

PubMed DOI Crossref

Whole-genome sequencing of recurrent neuroblastoma reveals somatic mutations that affect key players in cancer progression and telomere maintenance.

Fransson S, Martinez-Monleon A, Johansson M, ..., Kogner P, Martinsson T

Sci Rep 10 (1) 22432 [2020-12-31; online 2020-12-31]

Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

Variations among Viruses in Influent Water and Effluent Water at a Wastewater Plant over One Year as Assessed by Quantitative PCR and Metagenomics.

Wang H, Neyvaldt J, Enache L, ..., Bergstedt O, Norder H

Appl. Environ. Microbiol. 86 (24) - [2020-11-24; online 2020-11-24]

Clinical Genomics Gothenburg [Collaborative]

DOI Crossref

DNA-Based Methods for Measurable Residual Disease Detection in NPM1-Mutated Acute Myeloid Leukemia; Establishment of Cut-Offs for qPCR, Digital Droplet PCR and Targeted Deep Sequencing

Pettersson L, Johansson Alm S, Almstedt A, ..., Fogelstrand L, Ehinger M

Blood 136 (Supplement 1) 6-6 [2020-11-05; online 2020-11-05]

Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

MYO5B mutations in pheochromocytoma/paraganglioma promote cancer progression.

Tomić TT, Olausson J, Rehammar A, ..., Wassén ON, Abel F

PLoS Genet. 16 (6) e1008803 [2020-06-00; online 2020-06-08]

Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Hepatitis E virus genotype 3 strains and a plethora of other viruses detected in raw and still in tap water.

Wang H, Kjellberg I, Sikora P, ..., Bergstedt O, Norder H

Water Res. 168 (-) 115141 [2020-01-01; online 2019-09-30]

Clinical Genomics Gothenburg [Collaborative]

Year 2019

PubMed DOI Crossref

β-Mannosidosis caused by a novel homozygous intragenic inverted duplication in MANBA.

Blomqvist M, Smeland MF, Lindgren J, ..., Riise Stensland HMF, Asin-Cayuela J

Cold Spring Harb Mol Case Stud 5 (3) a003954 [2019-06-00; online 2019-06-03]

Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Service]

Year 2018

PubMed DOI Crossref

Hepatitis E Virus Genotype 3 Genomes from RNA-Positive but Serologically Negative Plasma Donors Have CUG as the Start Codon for ORF3.

Norder H, Galli C, Magnil E, ..., Nyström K, Magnius LO

Intervirology 61 (2) 96-103 [2018-10-02; online 2018-10-02]

Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

γ-glutamyl transpeptidase deficiency caused by a large homozygous intragenic deletion in GGT1.

Darin N, Leckström K, Sikora P, ..., Almén G, Asin-Cayuela J

Eur. J. Hum. Genet. 26 (6) 808-817 [2018-06-00; online 2018-02-26]

Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Service]

PubMed DOI Crossref

Differential removal of human pathogenic viruses from sewage by conventional and ozone treatments.

Wang H, Sikora P, Rutgersson C, ..., Larsson DGJ, Norder H

International Journal of Hygiene and Environmental Health 221 (3) 479-488 [2018-04-00; online 2018-02-01]

Bioinformatics Compute and Storage [Service] Clinical Genomics Gothenburg [Collaborative]

Year 2017

PubMed DOI Crossref

Genomic Variation in IbA10G2 and Other Patient-Derived Cryptosporidium hominis Subtypes.

Sikora P, Andersson S, Winiecka-Krusnell J, ..., Beser J, Arrighi RB

J. Clin. Microbiol. 55 (3) 844-858 [2017-03-00; online 2016-12-21]

Clinical Genomics Gothenburg [Collaborative]

Year 2016

PubMed DOI Crossref

Limited clonal relatedness between gut IgA plasma cells and memory B cells after oral immunization.

Bemark M, Hazanov H, Strömberg A, ..., Mehr R, Lycke NY

Nat Commun 7 (-) 12698 [2016-09-06; online 2016-09-06]

Clinical Genomics Gothenburg [Collaborative]

PubMed DOI Crossref

Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.

Jakobsson HE, Salvà-Serra F, Thorell K, ..., Kristiansson E, Moore ER

Genome Announc 4 (3) e00552-16 [2016-06-16; online 2016-06-16]

Clinical Genomics Gothenburg [Service] Clinical Genomics Stockholm [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.

Salvà-Serra F, Jakobsson HE, Thorell K, ..., Kristiansson E, Moore ER

Genome Announc 4 (2) e00175-16 [2016-03-24; online 2016-03-24]

Bioinformatics Compute and Storage [Service] Clinical Genomics Gothenburg [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]