Clinical Genomics Gothenburg

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SciLifeLab Infrastructure Unit Since 2016.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2016

Ended: Current

Year 2023

PubMed DOI Crossref
Covid-19 vaccine effectiveness against post-covid-19 condition among 589 722 individuals in Sweden: population based cohort study.
Lundberg-Morris L, Leach S, Xu Y, ..., Nyberg F, Bygdell M
BMJ 383 (-) e076990 [2023-11-22; online 2023-11-22]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Complex norovirus transmission dynamics at hospital wards revealed by deep sequencing.
Widström J, Andersson ME, Westin J, ..., Lindh M, Rydell GE
J. Clin. Microbiol. 61 (11) e0060823 [2023-11-21; online 2023-10-27]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Serum DHEA and Testosterone Levels Associate Inversely With Coronary Artery Calcification in Elderly Men.
Ohlsson C, Nethander M, Norlén A, ..., Gudnason V, Tivesten Å
J. Clin. Endocrinol. Metab. 108 (12) 3272-3279 [2023-11-17; online 2023-07-01]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Physical activity in childhood and later risk of inflammatory bowel disease: A Scandinavian birth cohort study.
Lerchova T, Östensson M, Sigvardsson I, ..., Mårild K, Ludvigsson J
United European Gastroenterol J 11 (9) 874-883 [2023-11-00; online 2023-10-04]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Inclusion body myositis with early onset: a population-based study.
Lindgren U, Hedberg-Oldfors C, Pullerits R, Lindberg C, Oldfors A
J. Neurol. 270 (11) 5483-5492 [2023-11-00; online 2023-07-27]
Clinical Genomics Gothenburg [Service]
DOI Crossref
Global blood miRNA profiling unravels early signatures of immunogenicity of Ebola vaccine rVSVΔG-ZEBOV-GP
Vianello E, Persson J, Andersson B, ..., Ottenhoff THM, Harandi AM
iScience - (-) 108574 [2023-11-00; online 2023-11-00]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
An atlas of genetic determinants of forearm fracture.
Nethander M, Movérare-Skrtic S, Kämpe A, ..., Richards JB, Ohlsson C
Nat. Genet. 55 (11) 1820-1830 [2023-11-00; online 2023-11-02]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Early-Life Hygiene-Related Factors and Risk of Inflammatory Bowel Disease: A Scandinavian Birth Cohort Study.
Guo A, Östensson M, Størdal K, Ludvigsson J, Mårild K
Inflamm Bowel Dis - (-) - [2023-10-31; online 2023-10-31]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Low Circulating Valine Associate With High Risk of Hip Fractures.
Grahnemo L, Eriksson AL, Nethander M, ..., Pettersson-Kymmer U, Ohlsson C
J. Clin. Endocrinol. Metab. 108 (11) e1384-e1393 [2023-10-18; online 2023-05-14]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Lowering of Circulating Sclerostin May Increase Risk of Atherosclerosis and Its Risk Factors: Evidence From a Genome-Wide Association Meta-Analysis Followed by Mendelian Randomization.
Zheng J, Wheeler E, Pietzner M, ..., Davey Smith G, Tobias JH
Arthritis & rheumatology (Hoboken, N.J.) 75 (10) 1781-1792 [2023-10-00; online 2023-08-03]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Childhood Socioeconomic Characteristics and Risk of Inflammatory Bowel Disease: A Scandinavian Birth Cohort Study.
Sigvardsson I, Størdal K, Östensson M, ..., Ludvigsson J, Mårild K
Inflamm Bowel Dis - (-) - [2023-09-22; online 2023-09-22]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Transcriptome network analysis links perinatal Staphylococcus epidermidis infection to microglia reprogramming in the immature hippocampus.
Gravina G, Ardalan M, Chumak T, ..., Ek CJ, Mallard C
Glia 71 (9) 2234-2249 [2023-09-00; online 2023-05-29]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Mosaic Loss of Chromosome Y Is Associated With Functional Outcome After Ischemic Stroke.
Dorvall M, Pedersen A, Dumanski JP, ..., Stanne TM, Jern C
Stroke 54 (9) 2434-2437 [2023-09-00; online 2023-07-19]
Clinical Genomics Gothenburg [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Feasibility to use whole-genome sequencing as a sole diagnostic method to detect genomic aberrations in pediatric B-cell acute lymphoblastic leukemia.
Rezayee F, Eisfeldt J, Skaftason A, ..., Rosenquist R, Barbany G
Front Oncol 13 (-) 1217712 [2023-08-14; online 2023-08-14]
Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Enhanced mitochondrial G-quadruplex formation impedes replication fork progression leading to mtDNA loss in human cells.
Doimo M, Chaudhari N, Abrahamsson S, ..., Chorell E, Wanrooij S
Nucleic Acids Res. 51 (14) 7392-7408 [2023-08-11; online 2023-06-23]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Genetic insights into resting heart rate and its role in cardiovascular disease.
van de Vegte YJ, Eppinga RN, van der Ende MY, ..., Verweij N, van der Harst P
Nat Commun 14 (1) 4646 [2023-08-02; online 2023-08-02]
Clinical Genomics Gothenburg [Collaborative] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Two different isoforms of osteopontin modulate myelination and axonal integrity.
Nilsson G, Mottahedin A, Zelco A, ..., Leavenworth JW, Wang X
FASEB Bioadv 5 (8) 336-353 [2023-08-00; online 2023-06-17]
Clinical Genomics Gothenburg [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Ribonuclease inhibitor 1 (RNH1) deficiency cause congenital cataracts and global developmental delay with infection-induced psychomotor regression and anemia.
Hedberg-Oldfors C, Mitra S, Molinaro A, ..., Sterky FH, Darin N
Eur. J. Hum. Genet. 31 (8) 887-894 [2023-08-00; online 2023-03-20]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Low-grade intestinal inflammation two decades after pelvic radiotherapy.
Devarakonda S, Thorsell A, Hedenström P, ..., Steineck G, Bull C
EBioMedicine 94 (-) 104691 [2023-08-00; online 2023-07-20]
Clinical Genomics Gothenburg [Service] Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Transplantation of gut microbiota from old mice into young healthy mice reduces lean mass but not bone mass.
Lawenius L, Cowardin C, Grahnemo L, ..., Sjögren K, Ohlsson C
Gut Microbes 15 (1) 2236755 [2023-07-21; online 2023-07-21]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Bone mineral density loci specific to the skull portray potential pleiotropic effects on craniosynostosis.
Medina-Gomez C, Mullin BH, Chesi A, ..., Kague E, Rivadeneira F
Commun Biol 6 (1) 691 [2023-07-04; online 2023-07-04]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Incidence and Characteristics in Children with Post-COVID-19 Condition in Sweden.
Bygdell M, Kindblom JM, Martikainen J, Li H, Nyberg F
JAMA Netw Open 6 (7) e2324246 [2023-07-03; online 2023-07-03]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Gene expression of S100a8/a9 predicts Staphylococcus aureus-induced septic arthritis in mice.
Deshmukh M, Subhash S, Hu Z, ..., Jin T, Kopparapu PK
Front Microbiol 14 (-) 1146694 [2023-06-15; online 2023-06-15]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Adipokines and risk of rheumatoid arthritis: A two-sample multivariable Mendelian randomisation study.
Vasileiadis GK, Sayols S, Zhao SS, Fatima T, Maglio C
PLoS ONE 18 (6) e0286981 [2023-06-09; online 2023-06-09]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Epidemiology, validation, and clinical characteristics of inflammatory bowel disease: the ABIS birth cohort study.
Östensson M, Björkqvist O, Guo A, ..., Mårild K, Ludvigsson J
BMC Gastroenterol 23 (1) 199 [2023-06-08; online 2023-06-08]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Cisplatin toxicity is counteracted by the activation of the p38/ATF-7 signaling pathway in post-mitotic C. elegans.
Raj D, Kraish B, Martikainen J, ..., Kao G, Naredi P
Nat Commun 14 (1) 2886 [2023-05-20; online 2023-05-20]
Clinical Genomics Gothenburg [Collaborative] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Metagenomic sequencing of human cardiac tissue reveals Microbial RNA which correlates with Toll-like receptor-associated inflammation in patients with heart disease.
Sandstedt J, Vukusic K, Dellgren G, ..., Mattsson Hultén L, Rotter Sopasakis V
Sci Rep 13 (1) 7884 [2023-05-15; online 2023-05-15]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Development of a machine learning framework for radiation biomarker discovery and absorbed dose prediction.
Andersson B, Langen B, Liu P, Dávila López M
Front Oncol 13 (-) 1156009 [2023-05-15; online 2023-05-15]
Clinical Genomics Gothenburg [Technology development]
PubMed DOI Crossref
Overweight in childhood and young adulthood increases the risk for adult thromboembolic events.
Lilja L, Bygdell M, Martikainen J, ..., Kindblom JM, Ohlsson C
J. Intern. Med. 293 (5) 615-623 [2023-05-00; online 2023-03-01]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
B4GALNT3 regulates glycosylation of sclerostin and bone mass.
Movérare-Skrtic S, Voelkl J, Nilsson KH, ..., Henning P, Ohlsson C
EBioMedicine 91 (-) 104546 [2023-05-00; online 2023-04-04]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Transcriptomics unravels molecular changes associated with cilia and COVID-19 in chronic rhinosinusitis with nasal polyps.
Torinsson Naluai Å, Östensson M, Fowler PC, ..., Harandi AM, Bende M
Sci Rep 13 (1) 6592 [2023-04-21; online 2023-04-21]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Identification of three bacterial species associated with increased appendicular lean mass: the HUNT study.
Grahnemo L, Nethander M, Coward E, ..., Hveem K, Ohlsson C
Nat Commun 14 (1) 2250 [2023-04-20; online 2023-04-20]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
C-type lectin receptor agonists elicit functional IL21-expressing Tfh cells and induce primary B cell responses in neonates.
Vono M, Mastelic-Gavillet B, Mohr E, ..., Lambert P, Siegrist C
Front Immunol 14 (-) 1155200 [2023-03-31; online 2023-03-31]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Exposure to nonanoic acid alters small intestinal neuroendocrine tumor phenotype.
Almobarak B, Amlani V, Inge L, ..., Arvidsson Y, Elias E
BMC Cancer 23 (1) 267 [2023-03-23; online 2023-03-23]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
A proinsulin-dependent interaction between ENPL-1 and ASNA-1 in neurons is required to maintain insulin secretion in C. elegans.
Podraza-Farhanieh A, Raj D, Kao G, Naredi P
Development 150 (6) - [2023-03-15; online 2023-03-20]
Clinical Genomics Gothenburg [Service] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Melatonin Prescription in Children and Adolescents in Relation to Body Weight and Age.
Kimland EE, Dahlén E, Martikainen J, Célind J, Kindblom JM
Pharmaceuticals (Basel) 16 (3) - [2023-03-06; online 2023-03-06]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Clonal relationships of memory B cell subsets in autoimmune mice.
Aranburu A, Engström E, Gerasimcik N, ..., Grimsholm O, Mårtensson IL
Front Immunol 14 (-) 1129234 [2023-03-01; online 2023-03-01]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Responses of carbapenemase-producing and non-producing carbapenem-resistant Pseudomonas aeruginosa strains to meropenem revealed by quantitative tandem mass spectrometry proteomics.
Salvà-Serra F, Jaén-Luchoro D, Marathe NP, ..., Moore ERB, Karlsson R
Front Microbiol 13 (-) 1089140 [2023-02-09; online 2023-02-09]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Service] Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Combinatory analysis of immune cell subsets and tumor-specific genetic variants predict clinical response to PD-1 blockade in patients with non-small cell lung cancer.
Dutta N, Rohlin A, Eklund EA, ..., Hallqvist A, Raghavan S
Front Oncol 12 (-) 1073457 [2023-02-09; online 2023-02-09]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
The injury-induced transcription factor SOX9 alters the expression of LBR, HMGA2, and HIPK3 in the human kidney.
Kha M, Krawczyk K, Choong OK, ..., Swärd K, Johansson ME
Am. J. Physiol. Renal Physiol. 324 (1) F75-F90 [2023-01-01; online 2022-12-01]
Clinical Genomics Gothenburg [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
A comprehensive characterization of patients diagnosed with post-COVID-19 condition in Sweden 16 months after the introduction of the International Classification of Diseases Tenth Revision diagnosis code (U09.9): a population-based cohort study.
Bygdell M, Leach S, Lundberg L, ..., Gisslén M, Nyberg F
Int J Infect Dis 126 (-) 104-113 [2023-01-00; online 2022-11-21]
Clinical Genomics Gothenburg [Collaborative]
DOI Crossref
Building a precision medicine infrastructure at a national level: The Swedish experience
Edsjö A, Lindstrand A, Gisselsson D, ..., Fioretos T, Rosenquist R
Camb. prisms Precis. med. 1 (-) - [2023-00-00; online 2023-02-27]
Clinical Genomics Gothenburg [Collaborative]

Year 2022

PubMed DOI Crossref
Fusion transcript analysis reveals slower response kinetics than multiparameter flow cytometry in childhood acute myeloid leukaemia.
Karlsson L, Nyvold CG, Soboli A, ..., Abrahamsson J, Fogelstrand L
Int J Lab Hematol 44 (6) 1094-1101 [2022-12-00; online 2022-08-02]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Self-reported symptom severity, general health, and impairment in post-acute phases of COVID-19: retrospective cohort study of Swedish public employees.
Larsson SB, von Feilitzen GS, Andersson ME, ..., Nilsson S, Sigström R
Sci Rep 12 (1) 19818 [2022-11-17; online 2022-11-17]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Dominantly inherited myosin IIa myopathy caused by aberrant splicing of MYH2.
Hedberg-Oldfors C, Elíasdóttir Ó, Geijer M, Lindberg C, Oldfors A
BMC Neurol 22 (1) 428 [2022-11-15; online 2022-11-15]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Dietary restriction and medical therapy drive PPARα-regulated improvements in early diabetic kidney disease in male rats.
Martin WP, Nair M, Chuah YHD, ..., le Roux CW, Docherty NG
Clin Sci (Lond) 136 (21) 1485-1511 [2022-11-11; online 2022-10-20]
Clinical Genomics Gothenburg [Collaborative] Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
The ESSENCE-Questionnaire in Medical Records Screening for Neurodevelopmental Symptoms/Problems: Utility and Clinical Validity.
Landgren V, Raanan Soltis Z, Svensson E, ..., Landgren M, Knez R
Neuropsychiatr Dis Treat 18 (-) 2559-2574 [2022-11-03; online 2022-11-03]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Novel TPR::ROS1 Fusion Gene Activates MAPK, PI3K and JAK/STAT Signaling in an Infant-type Pediatric Glioma.
Deland L, Keane S, Bontell TO, ..., Sabel M, Abel F
Cancer Genomics Proteomics 19 (6) 711-726 [2022-11-01; online 2022-11-01]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Assessment of the genetic and clinical determinants of hip fracture risk: Genome-wide association and Mendelian randomization study.
Nethander M, Coward E, Reimann E, ..., Hveem K, Ohlsson C
Cell Reports Medicine 3 (10) 100776 [2022-10-18; online 2022-10-20]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Implementing precision medicine in a regionally organized healthcare system in Sweden.
Fioretos T, Wirta V, Cavelier L, ..., Edsjö A, Rosenquist R
Nat. Med. 28 (10) 1980-1982 [2022-10-00; online 2022-09-20]
Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Linköping [Service] Clinical Genomics Stockholm [Collaborative] Clinical Genomics Umeå [Service] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Multifocal Neuroblastoma and Central Hypoventilation in An Infant with Germline ALK F1174I Mutation.
Djos A, Treis D, Fransson S, ..., Kogner P, Martinsson T
Diagnostics 12 (9) - [2022-09-19; online 2022-09-19]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Treatment of periprosthetic joint infections guided by minimum biofilm eradication concentration (MBEC) in addition to minimum inhibitory concentration (MIC): protocol for a prospective randomised clinical trial.
Tillander JAN, Rilby K, Svensson Malchau K, ..., Rolfson O, Trobos M
BMJ Open 12 (9) e058168 [2022-09-15; online 2022-09-15]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
An induced pluripotent stem cell t(7;12)(q36;p13) acute myeloid leukemia model shows high expression of MNX1 and a block in differentiation of the erythroid and megakaryocytic lineages.
Nilsson T, Waraky A, Östlund A, ..., Abrahamsson J, Palmqvist L
Int. J. Cancer 151 (5) 770-782 [2022-09-01; online 2022-06-03]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Technology development]
PubMed DOI Crossref
Microbial and human transcriptome in vaginal fluid at midgestation: Association with spontaneous preterm delivery.
Wikström T, Abrahamsson S, Bengtsson-Palme J, ..., Valentin L, Hagberg H
Clin Transl Med 12 (9) e1023 [2022-09-00; online 2022-09-15]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Amplification of CDK4 and MDM2: a detailed study of a high-risk neuroblastoma subgroup.
Martinez-Monleon A, Kryh Öberg H, Gaarder J, ..., Fransson S, Martinsson T
Sci Rep 12 (1) 12420 [2022-07-20; online 2022-07-20]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Cross-sectional associations between the gut microbe Ruminococcus gnavus and features of the metabolic syndrome.
Grahnemo L, Nethander M, Coward E, ..., Hveem K, Ohlsson C
Lancet Diabetes Endocrinol 10 (7) 481-483 [2022-07-00; online 2022-06-01]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Immunological differences between heart- and kidney-transplanted children: a cross-sectional study.
Ekman-Joelsson BM, Brandström P, Allén M, ..., Mellgren K, Ekwall O
Cardiol Young - (-) 1-6 [2022-06-24; online 2022-06-24]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
C1QTNF3 is Upregulated During Subcutaneous Adipose Tissue Remodeling and Stimulates Macrophage Chemotaxis and M1-Like Polarization.
Micallef P, Vujičić M, Wu Y, ..., Cardell SL, Wernstedt Asterholm I
Front Immunol 13 (-) 914956 [2022-06-02; online 2022-06-02]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach.
Alves G, Ogurtsov A, Karlsson R, ..., Moore ERB, Yu YK
J. Am. Soc. Mass Spectrom. 33 (6) 917-931 [2022-06-01; online 2022-05-02]
Clinical Genomics Gothenburg [Collaborative] Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Childhood overweight and risk of obesity-related adult cancer in men.
Célind J, Bygdell M, Martikainen J, Ohlsson C, Kindblom JM
Cancer Commun (Lond) 42 (6) 576-579 [2022-06-00; online 2022-04-08]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Birth weight and young adult body mass index for predicting the risk of developing adult heart failure in men.
Bygdell M, Ohlsson C, Lilja L, ..., Rosengren A, Kindblom JM
Eur J Prev Cardiol 29 (6) 971-978 [2022-05-06; online 2021-12-16]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Stratification of COVID-19 patients based on quantitative immune-related gene expression in whole blood
Persson J, Andersson B, van Veen S, ..., Andersson LM, Harandi AM
Mol. Immunol. 145 (-) 17-26 [2022-05-00; online 2022-05-00]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Polymorphisms in alpha 7 nicotinic acetylcholine receptor gene, CHRNA7, and its partially duplicated gene, CHRFAM7A, associate with increased inflammatory response in human peripheral mononuclear cells.
Pattanaik B, Hammarlund M, Mjörnstedt F, ..., Bergström G, Johansson ME
FASEB J. 36 (5) e22271 [2022-05-00; online 2022-03-29]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
ADP-ribosylating adjuvant reveals plasticity in cDC1 cells that drive mucosal Th17 cell development and protection against influenza virus infection.
Arabpour M, Lebrero-Fernandez C, Schön K, ..., Agace W, Lycke N
Mucosal Immunol 15 (4) 745-761 [2022-04-00; online 2022-04-13]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
A Study Protocol for Validation and Implementation of Whole-Genome and -Transcriptome Sequencing as a Comprehensive Precision Diagnostic Test in Acute Leukemias.
Berglund E, Barbany G, Orsmark-Pietras C, ..., Fioretos T, Rosenquist R
Front Med (Lausanne) 9 (-) 842507 [2022-03-24; online 2022-03-24]
Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Collaborative] Clinical Genomics Umeå [Service] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Deficits in attention, motor control and perception childhood to age 30 years: prospective case-control study of outcome predictors.
Landgren V, Fernell E, Gillberg C, Landgren M, Johnson M
BMJ Open 12 (3) e054424 [2022-03-17; online 2022-03-17]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Optimization of cerebrospinal fluid microbial DNA metagenomic sequencing diagnostics.
Olausson J, Brunet S, Vracar D, ..., Jakobsson HE, Tang K
Sci Rep 12 (1) 3378 [2022-03-01; online 2022-03-01]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
TC-hunter: identification of the insertion site of a transgenic gene within the host genome.
Börjesson V, Martinez-Monleon A, Fransson S, ..., Milosevic J, López MD
BMC Genomics 23 (1) 149 [2022-02-20; online 2022-02-20]
Clinical Genomics Gothenburg [Technology development]
PubMed DOI Crossref
Scavenger receptor CD36 governs recruitment of myeloid cells to the blood-CSF barrier after stroke in neonatal mice.
Rayasam A, Mottahedin A, Faustino J, Mallard C, Vexler ZS
J Neuroinflammation 19 (1) 47 [2022-02-11; online 2022-02-11]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
PΨFinder: a practical tool for the identification and visualization of novel pseudogenes in DNA sequencing data.
Abrahamsson S, Eiengård F, Rohlin A, Dávila López M
BMC Bioinformatics 23 (1) 59 [2022-02-03; online 2022-02-03]
Clinical Genomics Gothenburg [Technology development]
PubMed DOI Crossref
Proteomic characterisation of polyglucosan bodies in skeletal muscle in RBCK1 deficiency.
Thomsen C, Malfatti E, Jovanovic A, ..., Lindberg C, Oldfors A
Neuropathol Appl Neurobiol 48 (1) e12761 [2022-02-00; online 2021-09-12]
Clinical Genomics Gothenburg [Service] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Genetically proxied therapeutic inhibition of antihypertensive drug targets and risk of common cancers: A mendelian randomization analysis.
Yarmolinsky J, Díez-Obrero V, Richardson TG, ..., Martin RM, Moreno V
PLoS Med. 19 (2) e1003897 [2022-02-00; online 2022-02-03]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Medications Activating Tubular Fatty Acid Oxidation Enhance the Protective Effects of Roux-en-Y Gastric Bypass Surgery in a Rat Model of Early Diabetic Kidney Disease.
Martin WP, Chuah YHD, Abdelaal M, ..., le Roux CW, Docherty NG
Front Endocrinol (Lausanne) 12 (-) 757228 [2022-01-26; online 2022-01-26]
Clinical Genomics Gothenburg [Collaborative] Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Sustained Response to Entrectinib in an Infant With a Germline ALKAL2 Variant and Refractory Metastatic Neuroblastoma With Chromosomal 2p Gain and Anaplastic Lymphoma Kinase and Tropomyosin Receptor Kinase Activation.
Treis D, Umapathy G, Fransson S, ..., Martinsson T, Kogner P
JCO Precision Oncology 6 (6) e2100271 [2022-01-00; online 2022-01-28]
Clinical Genomics Gothenburg [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
A genome-wide scan to locate regions associated with familial vesicoureteral reflux.
Bartik Z, Sillén U, Östensson M, ..., Sjöberg R, Martinsson T
Exp Ther Med 23 (1) 92 [2022-01-00; online 2021-11-28]
Clinical Genomics Gothenburg [Collaborative]

Year 2021

PubMed DOI Crossref
Single-cell atlas reveals meningeal leukocyte heterogeneity in the developing mouse brain.
Zelco A, Börjesson V, de Kanter JK, ..., Holstege FCP, Wang X
Genes Dev. 35 (15-16) 1190-1207 [2021-08-01; online 2021-07-22]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Comparison of RNA- and DNA-based methods for measurable residual disease analysis in NPM1-mutated acute myeloid leukemia.
Pettersson L, Johansson Alm S, Almstedt A, ..., Fogelstrand L, Ehinger M
Int J Lab Hematol 43 (4) 664-674 [2021-08-00; online 2021-05-30]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli, and Candida albicans in Blood.
Kondori N, Kurtovic A, Piñeiro-Iglesias B, ..., Moore ERB, Karlsson R
Front. Cell. Infect. Microbiol. 11 (-) 634215 [2021-07-26; online 2021-07-26]
Clinical Genomics Gothenburg [Collaborative] Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen Neoehrlichia mikurensis.
Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C
Microorganisms 9 (7) - [2021-07-13; online 2021-07-13]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
ALK ligand ALKAL2 potentiates MYCN-driven neuroblastoma in the absence of ALK mutation.
Borenäs M, Umapathy G, Lai WY, ..., Hallberg B, Palmer RH
EMBO J. 40 (3) e105784 [2021-02-01; online 2021-01-07]
Clinical Genomics Gothenburg [Collaborative] Glycoproteomics and MS Proteomics [Service]

Year 2020

PubMed DOI Crossref
Whole-genome sequencing of recurrent neuroblastoma reveals somatic mutations that affect key players in cancer progression and telomere maintenance.
Fransson S, Martinez-Monleon A, Johansson M, ..., Kogner P, Martinsson T
Sci Rep 10 (1) 22432 [2020-12-31; online 2020-12-31]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Variations among Viruses in Influent Water and Effluent Water at a Wastewater Plant over One Year as Assessed by Quantitative PCR and Metagenomics.
Wang H, Neyvaldt J, Enache L, ..., Bergstedt O, Norder H
Appl. Environ. Microbiol. 86 (24) - [2020-11-24; online 2020-11-24]
Clinical Genomics Gothenburg [Collaborative]
DOI Crossref
DNA-Based Methods for Measurable Residual Disease Detection in NPM1-Mutated Acute Myeloid Leukemia; Establishment of Cut-Offs for qPCR, Digital Droplet PCR and Targeted Deep Sequencing
Pettersson L, Johansson Alm S, Almstedt A, ..., Fogelstrand L, Ehinger M
Blood 136 (Supplement 1) 6-6 [2020-11-05; online 2020-11-05]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
MYO5B mutations in pheochromocytoma/paraganglioma promote cancer progression.
Tomić TT, Olausson J, Rehammar A, ..., Wassén ON, Abel F
PLoS Genet. 16 (6) e1008803 [2020-06-00; online 2020-06-08]
Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Hepatitis E virus genotype 3 strains and a plethora of other viruses detected in raw and still in tap water.
Wang H, Kjellberg I, Sikora P, ..., Bergstedt O, Norder H
Water Res. 168 (-) 115141 [2020-01-01; online 2019-09-30]
Clinical Genomics Gothenburg [Collaborative]

Year 2019

PubMed DOI Crossref
β-Mannosidosis caused by a novel homozygous intragenic inverted duplication in MANBA.
Blomqvist M, Smeland MF, Lindgren J, ..., Riise Stensland HMF, Asin-Cayuela J
Cold Spring Harb Mol Case Stud 5 (3) a003954 [2019-06-00; online 2019-06-03]
Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Service]

Year 2018

PubMed DOI Crossref
Hepatitis E Virus Genotype 3 Genomes from RNA-Positive but Serologically Negative Plasma Donors Have CUG as the Start Codon for ORF3.
Norder H, Galli C, Magnil E, ..., Nyström K, Magnius LO
Intervirology 61 (2) 96-103 [2018-10-02; online 2018-10-02]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
γ-glutamyl transpeptidase deficiency caused by a large homozygous intragenic deletion in GGT1.
Darin N, Leckström K, Sikora P, ..., Almén G, Asin-Cayuela J
Eur. J. Hum. Genet. 26 (6) 808-817 [2018-06-00; online 2018-02-26]
Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Differential removal of human pathogenic viruses from sewage by conventional and ozone treatments.
Wang H, Sikora P, Rutgersson C, ..., Larsson DGJ, Norder H
International Journal of Hygiene and Environmental Health 221 (3) 479-488 [2018-04-00; online 2018-02-01]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Collaborative]

Year 2017

PubMed DOI Crossref
Genomic Variation in IbA10G2 and Other Patient-Derived Cryptosporidium hominis Subtypes.
Sikora P, Andersson S, Winiecka-Krusnell J, ..., Beser J, Arrighi RB
J. Clin. Microbiol. 55 (3) 844-858 [2017-03-00; online 2016-12-21]
Clinical Genomics Gothenburg [Collaborative]

Year 2016

PubMed DOI Crossref
Limited clonal relatedness between gut IgA plasma cells and memory B cells after oral immunization.
Bemark M, Hazanov H, Strömberg A, ..., Mehr R, Lycke NY
Nat Commun 7 (-) 12698 [2016-09-06; online 2016-09-06]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.
Jakobsson HE, Salvà-Serra F, Thorell K, ..., Kristiansson E, Moore ERB
Genome Announc 4 (3) e00552-16 [2016-06-16; online 2016-06-16]
Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Stockholm [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.
Salvà-Serra F, Jakobsson HE, Thorell K, ..., Kristiansson E, Moore ER
Genome Announc 4 (2) e00175-16 [2016-03-24; online 2016-03-24]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
SciLifeLab Data Centre
Publications 9.5.0