Bioinformatics Support for Computational Resources

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SciLifeLab Infrastructure Unit since 2013. From 2013 to 2023 called “Bioinformatics Compute and Storage”.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2013

Ended: Current

Year 2024

PubMed DOI Crossref
The evolutionary history of metastatic pancreatic neuroendocrine tumours reveals a therapy driven route to high-grade transformation.
Backman S, Botling J, Nord H, ..., Åkerström T, Crona J
J. Pathol. 264 (4) 357-370 [2024-12-00; online 2024-10-03]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Uppsala [Collaborative] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Scifer: An R/Bioconductor package for large-scale integration of Sanger sequencing and flow cytometry data of index-sorted single cells
Arcoverde Cerveira R, Lenart K, Martin M, ..., Ols S, Loré K
Immunoinformatics (Amst) 16 (-) 100046 [2024-12-00; online 2024-12-00]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Longitudinal Analysis of Natural History Progression of Rare and Ultra-Rare Cerebellar Ataxias Using Item Response Theory.
Hamdan A, Hendrickx N, Hooker AC, ..., Synofzik M, Karlsson MO
Clin. Pharmacol. Ther. 116 (6) 1593-1605 [2024-12-00; online 2024-10-15]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Genetic diversity insights from population genomics and machine learning tools for Nordic Arctic charr (Salvelinus alpinus) populations
Palaiokostas C, Kurta K, Pappas F, ..., Janhunen M, Kause A
Aquaculture Reports 39 (-) 102495 [2024-12-00; online 2024-12-00]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing.
Eisfeldt J, Higginbotham EJ, Lenner F, ..., Scherer SW, Feuk L
Genome Res. 34 (11) 1763-1773 [2024-11-20; online 2024-11-20]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Leveraging the T2T assembly to resolve rare and pathogenic inversions in reference genome gaps.
Bilgrav Saether K, Eisfeldt J, Bengtsson JD, ..., Carvalho CMB, Lindstrand A
Genome Res. 34 (11) 1785-1797 [2024-11-20; online 2024-11-20]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Stockholm [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities.
Eisfeldt J, Ameur A, Lenner F, ..., Feuk L, Lindstrand A
Genome Res. 34 (11) 1774-1784 [2024-11-20; online 2024-11-20]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Umeå [Collaborative] Clinical Genomics Uppsala [Collaborative] NGI Long read [Technology development] NGI Uppsala (Uppsala Genome Center) [Technology development] National Genomics Infrastructure [Technology development]
PubMed DOI Crossref
Whole-Genome Sequencing of Invasive Neonatal Escherichia coli From Uppsala County, Sweden.
Heydecke A, Myrelid Å, Normann E, ..., Tano E, Sütterlin S
J. Infect. Dis. 230 (5) e1136-e1145 [2024-11-15; online 2024-06-13]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
A genome-wide association study in Swedish colorectal cancer patients with gastric- and prostate cancer in relatives.
Samola Winnberg J, Vermani L, Liu W, ..., Lindblad M, Lindblom A
Hered Cancer Clin Pract 22 (1) 25 [2024-11-14; online 2024-11-14]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cancer-associated fibroblast subtypes modulate the tumor-immune microenvironment and are associated with skin cancer malignancy.
Forsthuber A, Aschenbrenner B, Korosec A, ..., Kasper M, Lichtenberger BM
Nat Commun 15 (1) 9678 [2024-11-08; online 2024-11-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Three-dimensional localization and tracking of chromosomal loci throughout the Escherichia coli cell cycle.
Karempudi P, Gras K, Amselem E, ..., Schirman D, Elf J
Commun Biol 7 (1) 1443 [2024-11-05; online 2024-11-05]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Urban Pigeons as Reservoirs of Critical Pathogens: Improved protocol for sequencing pigeon faeces in disease monitoring
Hermann E, Van Damme R, Bongcam-Rudloff E, Nasirzadeh L
EMBnet j. 30 (-) e1059 [2024-11-04; online 2024-11-04]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Perfluorooctanesulfonic acid (PFOS) induced cancer related DNA methylation alterations in human breast cells: A whole genome methylome study.
Pierozan P, Höglund A, Theodoropoulou E, Karlsson O
Sci. Total Environ. 949 (-) 174864 [2024-11-01; online 2024-07-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The non-canonical BAF chromatin remodeling complex is a novel target of spliceosome dysregulation in SF3B1-mutated chronic lymphocytic leukemia.
Hägerstrand D, Oder B, Cortese D, ..., Sutton LA, Rosenquist R
Leukemia 38 (11) 2429-2442 [2024-11-00; online 2024-09-11]
Bioinformatics Support for Computational Resources [Service] Global Proteomics and Proteogenomics [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The Arabidopsis splicing factor PORCUPINE/SmE1 orchestrates temperature-dependent root development via auxin homeostasis maintenance.
El Arbi N, Nardeli SM, Šimura J, Ljung K, Schmid M
New Phytol. 244 (4) 1408-1421 [2024-11-00; online 2024-09-27]
Bioinformatics Support for Computational Resources [Service] Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Pushing the boundaries of rare disease diagnostics with the help of the first Undiagnosed Hackathon.
Delgado-Vega AM, Cederroth H, Taylan F, ..., Cederroth M, Nordgren A
Nat. Genet. 56 (11) 2287-2294 [2024-11-00; online 2024-10-22]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Service] Clinical Genomics Stockholm [Service] Clinical Genomics Uppsala [Collaborative] NGI Long read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Network analysis reveals age- and virus-specific circuits in nasal epithelial cells of extremely premature infants.
Wisgrill L, Martens A, Kasbauer R, ..., Fyhrquist N, Alenius H
Allergy 79 (11) 3062-3081 [2024-11-00; online 2024-06-19]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Molecular Profiling Defines Three Subtypes of Synovial Sarcoma.
Chen Y, Su Y, Cao X, ..., Li X, de Flon FH
Adv Sci (Weinh) 11 (41) e2404510 [2024-11-00; online 2024-09-10]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Stockholm [Service] Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
Jag1 insufficiency alters liver fibrosis via T cell and hepatocyte differentiation defects.
Mašek J, Filipovic I, Van Hul N, ..., Dobeš J, Andersson ER
EMBO Mol Med 16 (11) 2946-2975 [2024-11-00; online 2024-10-02]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health.
Vera-Ponce de León A, Hensen T, Hoetzinger M, ..., Pope PB, La Rosa SL
Nat Microbiol 9 (11) 3059-3074 [2024-11-00; online 2024-10-14]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Examining the liver-pancreas crosstalk reveals a role for the molybdenum cofactor in β-cell regeneration.
Karampelias C, Băloiu B, Rathkolb B, ..., Hrabě de Angelis M, Andersson O
Life Sci. Alliance 7 (11) e202402771 [2024-11-00; online 2024-08-19]
Bioinformatics Support for Computational Resources [Service] NGI Short read NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Depth-specific distribution of bacterial MAGs in permafrost active layer in Ny Ålesund, Svalbard (79°N).
Sipes K, Buongiorno J, Steen AD, ..., Vishnivetskaya TA, Lloyd KG
Syst. Appl. Microbiol. 47 (6) 126544 [2024-11-00; online 2024-08-28]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
An ancient ecospecies of Helicobacter pylori.
Tourrette E, Torres RC, Svensson SL, ..., Thorell K, Falush D
Nature 635 (8037) 178-185 [2024-11-00; online 2024-10-16]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes.
Jayaprasad S, Peona V, Ellerstrand SJ, ..., Schielzeth H, Palacios-Gimenez OM
Mol. Ecol. - (-) e17567 [2024-10-30; online 2024-10-30]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Epigenetic memory of radiotherapy in dermal fibroblasts impairs wound repair capacity in cancer survivors.
Bian X, Piipponen M, Liu Z, ..., Halle M, Xu Landén N
Nat Commun 15 (1) 9286 [2024-10-28; online 2024-10-28]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
ADAR3 modulates neuronal differentiation and regulates mRNA stability and translation.
Karlström V, Sagredo EA, Planells J, ..., Visa N, Öhman M
Nucleic Acids Res. 52 (19) 12021-12038 [2024-10-28; online 2024-09-01]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A transcriptome atlas of zygotic and somatic embryogenesis in Norway spruce.
Stojkovič K, Canovi C, Le K, ..., Egertsdotter U, Street NR
Plant J. - (-) - [2024-10-27; online 2024-10-27]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data.
Abalde S, Jondelius U
Syst. Biol. - (-) - [2024-10-25; online 2024-10-25]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Surface microlayer-mediated virome dissemination in the Central Arctic.
Rahlff J, Westmeijer G, Weissenbach J, Antson A, Holmfeldt K
Microbiome 12 (1) 218 [2024-10-24; online 2024-10-24]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Normalized Interferon Signatures and Clinical Improvements by IFNAR1 Blocking Antibody (Anifrolumab) in Patients with Type I Interferonopathies.
Kretzschmar G, Páez LP, Tan Z, ..., Horne A, Brodin P
J Clin Immunol 45 (1) 31 [2024-10-23; online 2024-10-23]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Oral-gut microbiome interactions in advanced cirrhosis: characterisation of pathogenic enterotypes and salivatypes, virulence factors and antimicrobial.
Lee S, Arefaine B, Begum N, ..., Shoaie S, Patel VC
J Hepatol - (-) - [2024-10-22; online 2024-10-22]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Persistent effects of di-n-butyl phthalate on liver transcriptome: impaired energy and lipid metabolic pathways.
Theodoropoulou E, Pierozan P, Marabita F, Höglund A, Karlsson O
Chemosphere - (-) 143605 [2024-10-21; online 2024-10-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Changes in circulating extracellular vesicle cargo are associated with cognitive decline after major surgery: an observational case-control study.
Mkrtchian S, Eldh M, Ebberyd A, ..., Eriksson LI, Gómez-Galán M
Br J Anaesth - (-) - [2024-10-18; online 2024-10-18]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Different gene expression patterns between mouse and human brain pericytes revealed by single-cell/nucleus RNA sequencing.
Miao Y, Li W, Jeansson M, ..., Muhl L, He L
Vascul Pharmacol 157 (-) 107434 [2024-10-17; online 2024-10-17]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Temperature, sediment resuspension, and salinity drive the prevalence of Vibrio vulnificus in the coastal Baltic Sea.
Fernández-Juárez V, Riedinger DJ, Gusmao JB, ..., Labrenz M, Riemann L
MBio 15 (10) e0156924 [2024-10-16; online 2024-09-19]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
SARS-CoV-2 infection induces hyaluronan production in vitro and hyaluronan levels in COVID-19 patients relate to morbidity and long-term lung impairment: a prospective cohort study.
Hellman U, Rosendal E, Lehrstrand J, ..., Överby AK, Lenman A
MBio 15 (10) e0130324 [2024-10-16; online 2024-09-20]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Candidatus Desulforudis audaxviator dominates a 975 m deep groundwater community in central Sweden.
Westmeijer G, van Dam F, Kietäväinen R, ..., Drake H, Dopson M
Commun Biol 7 (1) 1332 [2024-10-15; online 2024-10-15]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Resilience of genetic diversity in forest trees over the Quaternary.
Milesi P, Kastally C, Dauphin B, ..., Pyhäjärvi T, GenTree Consortium
Nat Commun 15 (1) 8538 [2024-10-14; online 2024-10-14]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
The genome sequence of the white-tailed eagle, Haliaeetus albicilla (Linnaeus, 1758).
Pálsson S, Skarphéðinsson KH, Heintz J, ..., Tree of Life Core Informatics collective , Darwin Tree of Life Consortium
Wellcome Open Res 9 (-) 575 [2024-10-09; online 2024-10-09]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Characteristics of gene expression in epicardial adipose tissue and subcutaneous adipose tissue in patients at risk for heart failure undergoing coronary artery bypass grafting.
Frisk C, Ekström M, Eriksson MJ, ..., Linde C, Persson B
BMC Genomics 25 (1) 938 [2024-10-07; online 2024-10-07]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The lncRNA SNHG26 drives the inflammatory-to-proliferative state transition of keratinocyte progenitor cells during wound healing.
Li D, Liu Z, Zhang L, ..., Sommar P, Xu Landén N
Nat Commun 15 (1) 8637 [2024-10-05; online 2024-10-05]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Single cell [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment.
Techameena P, Feng X, Zhang K, Hadjab S
Nat Commun 15 (1) 8585 [2024-10-04; online 2024-10-04]
Bioinformatics Support for Computational Resources [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
Liu L, Hakhverdyan M, Wallgren P, ..., Hulst M, Van Borm S
Microbiol Spectr 12 (10) e0420823 [2024-10-03; online 2024-08-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Multi-omics analysis reveals the key factors involved in the severity of the Alzheimer's disease.
Meng L, Jin H, Yulug B, ..., Uhlén M, Mardinoglu A
Alzheimers Res Ther 16 (1) 213 [2024-10-02; online 2024-10-02]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service] NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ebullition dominates methane emissions in stratified coastal waters.
Hermans M, Stranne C, Broman E, ..., Jilbert T, Humborg C
Sci. Total Environ. 945 (-) 174183 [2024-10-01; online 2024-06-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae.
Khan FK, Sánchez-García M, Johannesson H, Ryberg M
New Phytol. 244 (1) 219-234 [2024-10-00; online 2024-08-07]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
"Metagenomics reveal the potential for geosmin and 2-methylisoborneol production across multiple bacterial phyla in recirculating aquaculture systems".
Zheng D, Wilén BM, Öberg O, Wik T, Modin O
Environ. Microbiol. 26 (10) e16696 [2024-10-00; online 2024-10-09]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
RNA silencing is a key regulatory mechanism in the biocontrol fungus Clonostachys rosea-wheat interactions.
Piombo E, Vetukuri RR, Konakalla NC, ..., Karlsson M, Dubey M
BMC Biol. 22 (1) 219 [2024-09-30; online 2024-09-30]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
CDK4 is co-amplified with either TP53 promoter gene fusions or MDM2 through distinct mechanisms in osteosarcoma.
Saba KH, Difilippo V, Styring E, ..., Baumhoer D, Nord KH
npj Genom. Med. 9 (1) 42 [2024-09-25; online 2024-09-25]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Multi-omics analysis of aggregative multicellularity.
Edelbroek B, Westholm JO, Bergquist J, Söderbom F
iScience 27 (9) 110659 [2024-09-20; online 2024-08-03]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Unraveling the Genetics of Shared Clinical and Serological Manifestations in Patients With Systemic Inflammatory Autoimmune Diseases.
Bianchi M, Kozyrev SV, Notarnicola A, ..., Lindblad-Toh K, with the DISSECT consortium and the ImmunoArray consortium
Arthritis & rheumatology (Hoboken, N.J.) - (-) - [2024-09-16; online 2024-09-16]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula.
Robinson KM, Schiffthaler B, Liu H, ..., Ingvarsson PK, Street NR
Physiol Plantarum 176 (5) e14511 [2024-09-16; online 2024-09-16]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19.
Li X, Jayaprasad S, Einarsdottir E, ..., Kawakami T, Palacios-Gimenez OM
Sci Data 11 (1) 997 [2024-09-12; online 2024-09-12]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Aging is associated with functional and molecular changes in distinct hematopoietic stem cell subsets.
Su TY, Hauenstein J, Somuncular E, ..., Månsson R, Luc S
Nat Commun 15 (1) 7966 [2024-09-11; online 2024-09-11]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma.
Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y
J. Clin. Invest. 134 (21) - [2024-09-10; online 2024-09-10]
Bioinformatics Support for Computational Resources [Service] CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Loss of Lamin A leads to the nuclear translocation of AGO2 and compromised RNA interference.
Lobo V, Nowak I, Fernandez C, ..., Angeletti D, Sarshad AA
Nucleic Acids Res. 52 (16) 9917-9935 [2024-09-09; online 2024-07-12]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Transient colonizing microbes promote gut dysbiosis and functional impairment.
Lee S, Meslier V, Bidkhori G, ..., Uhlen M, Shoaie S
NPJ Biofilms Microbiomes 10 (1) 80 [2024-09-08; online 2024-09-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Male-biased recombination at chromosome ends in a songbird revealed by precisely mapping crossover positions.
Zhang H, Lundberg M, Ponnikas S, Hasselquist D, Hansson B
G3 (Bethesda) 14 (9) - [2024-09-04; online 2024-07-10]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Temporal dynamics of faster neo-Z evolution in butterflies.
Höök L, Vila R, Wiklund C, Backström N
Evolution 78 (9) 1554-1567 [2024-09-03; online 2024-05-30]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Systems genetic analysis of lignin biosynthesis in Populus tremula.
Luomaranta M, Grones C, Choudhary S, ..., Street NR, Tuominen H
New Phytol. 243 (6) 2157-2174 [2024-09-00; online 2024-07-28]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Speciation in savanna birds in South America: The case of the Least Nighthawk Chordeiles pusillus (Aves: Caprimulgidae) in and out of the Amazon.
Fernandes AM, Cohn-Haft M, Fábio Silveira L, ..., Nascimento N, Olsson U
Mol. Phylogenet. Evol. 198 (-) 108117 [2024-09-00; online 2024-06-07]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Multiple factors shape social contacts in dairy cows
Marina H, Nielsen PP, Fikse WF, Rönnegård L
Applied Animal Behaviour Science 278 (-) 106366 [2024-09-00; online 2024-09-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Metagenomic identification of bull semen microbiota in different seasons.
Cojkic A, Niazi A, Morrell JM
Animal Reproduction Science 268 (-) 107569 [2024-09-00; online 2024-07-30]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Immune system adaptation during gender-affirming testosterone treatment.
Lakshmikanth T, Consiglio C, Sardh F, ..., Landegren N, Brodin P
Nature 633 (8028) 155-164 [2024-09-00; online 2024-09-04]
Affinity Proteomics Stockholm [Service] Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Hop stunt viroid infection induces heterochromatin reorganization.
Marquez-Molins J, Cheng J, Corell-Sierra J, ..., Gomez G, Martinez G
New Phytol. 243 (6) 2351-2367 [2024-09-00; online 2024-07-18]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Genome-Wide Association Study of Obsessive-Compulsive Symptoms including 33,943 individuals from the general population.
Strom NI, Burton CL, Iyegbe C, ..., Smit DJA, Arnold PD
Mol. Psychiatry 29 (9) 2714-2723 [2024-09-00; online 2024-03-28]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Dantrolene corrects cellular disease features of Darier disease and may be a novel treatment.
Hunt M, Wang N, Pupinyo N, ..., Bachar-Wikstrom E, Wikstrom JD
EMBO Mol Med 16 (9) 1986-2001 [2024-09-00; online 2024-07-26]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Contemporary intergeneric hybridization and backcrossing among birds-of-paradise.
Thörn F, Soares AER, Müller IA, ..., Blom MPK, Irestedt M
Evolution Letters 8 (5) 680-694 [2024-09-00; online 2024-06-08]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
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Int. J. Cancer 155 (1) 40-53 [2024-07-01; online 2024-02-20]
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Sci Data 11 (1) 678 [2024-06-22; online 2024-06-22]
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G3 (Bethesda) 14 (6) - [2024-06-05; online 2024-04-24]
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Genome Biol Evol 16 (6) - [2024-06-04; online 2024-05-25]
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PLoS ONE 19 (5) e0293715 [2024-05-23; online 2024-05-23]
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Year 2023

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Mol. Phylogenet. Evol. 189 (-) 107909 [2023-12-00; online 2023-08-22]
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Epigenetics 18 (1) 2196656 [2023-12-00; online 2023-05-16]
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Microbial communities mediating net methylmercury formation along a trophic gradient in a peatland chronosequence.
Wang B, Hu H, Bishop K, ..., Bertilsson S, Bravo AG
J Hazard Mater 442 (-) 130057 [2023-01-15; online 2022-09-23]
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PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia.
Arendt ML, Sakthikumar S, Melin M, ..., Rönnberg H, Lindblad-Toh K
Sci Rep 13 (1) 632 [2023-01-12; online 2023-01-12]
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Antibiotic perseverance increases the risk of resistance development.
Brandis G, Larsson J, Elf J
Proc. Natl. Acad. Sci. U.S.A. 120 (2) e2216216120 [2023-01-10; online 2023-01-03]
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Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean.
Koptekin D, Yüncü E, Rodríguez-Varela R, ..., Götherström A, Somel M
Curr. Biol. 33 (1) 41-57.e15 [2023-01-09; online 2022-12-08]
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High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice.
Hases L, Stepanauskaite L, Birgersson M, ..., Engstrand L, Williams C
Commun Biol 6 (1) 20 [2023-01-09; online 2023-01-09]
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The genetic history of Scandinavia from the Roman Iron Age to the present.
Rodríguez-Varela R, Moore KHS, Ebenesersdóttir SS, ..., Helgason A, Götherström A
Cell 186 (1) 32-46.e19 [2023-01-05; online 2023-01-08]
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Novel cancer gene discovery using a forward genetic screen in RCAS-PDGFB-driven gliomas.
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Neuro-oncology 25 (1) 97-107 [2023-01-05; online 2022-06-24]
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Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles.
Immonen E, Sayadi A, Stojković B, ..., Wiberg RAW, Arnqvist G
Genome Biol Evol 15 (1) - [2023-01-04; online 2022-12-22]
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Extracellular Galectin 4 Drives Immune Evasion and Promotes T-cell Apoptosis in Pancreatic Cancer.
Lidström T, Cumming J, Gaur R, ..., Patthey C, Öhlund D
Cancer Immunol Res 11 (1) 72-92 [2023-01-03; online 2022-12-09]
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Breast cancer patient-derived whole-tumor cell culture model for efficient drug profiling and treatment response prediction.
Chen X, Sifakis EG, Robertson S, ..., Ma R, Hartman J
Proc. Natl. Acad. Sci. U.S.A. 120 (1) e2209856120 [2023-01-03; online 2022-12-27]
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The path to immortalization of cells starts by managing stress through gene duplications.
Lewerentz J, Johansson AM, Stenberg P
Exp. Cell Res. 422 (1) 113431 [2023-01-01; online 2022-11-21]
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Associations of PFAS-related plasma metabolites with cholesterol and triglyceride concentrations.
Schillemans T, Bergdahl IA, Hanhineva K, ..., Åkesson A, Brunius C
Environ. Res. 216 (Pt 2) 114570 [2023-01-01; online 2022-10-13]
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Three Adult Cases of STAT1 Gain-of-Function with Chronic Mucocutaneous Candidiasis Treated with JAK Inhibitors.
Borgström EW, Edvinsson M, Pérez LP, ..., Brodin P, Bergman P
J Clin Immunol 43 (1) 136-150 [2023-01-00; online 2022-09-02]
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Graphene oxide elicits microbiome-dependent type 2 immune responses via the aryl hydrocarbon receptor.
Peng G, Sinkko HM, Alenius H, ..., Bräutigam L, Fadeel B
Nat Nanotechnol 18 (1) 42-48 [2023-01-00; online 2022-12-12]
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Gene gain facilitated endosymbiotic evolution of Chlamydiae.
Dharamshi JE, Köstlbacher S, Schön ME, ..., Ettema TJG, Horn M
Nat Microbiol 8 (1) 40-54 [2023-01-00; online 2023-01-05]
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Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs.
Lingaas F, Tengvall K, Jansen JH, ..., Lindblad-Toh K, Wang C
PLoS Genet. 19 (1) e1010599 [2023-01-00; online 2023-01-24]
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Systematics of the avian family Alaudidae using multilocus and genomic data
Alström P, Mohammadi Z, Enbody ED, ..., Donald PF, Stervander M
Avian Research 14 (-) 100095 [2023-00-00; online 2023-00-00]
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A crowd-sourced genomic project to assess hybrid content in a rare avian vagrant (Azure Tit Cyanistes cyanus (Pallas, 1770))
Irestedt M, Thörn F, Ericson PGP, ..., Johansson F, Nylander JAA
Avian Research 14 (-) 100130 [2023-00-00; online 2023-00-00]
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Year 2022

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Upper gut heat shock proteins HSP70 and GRP78 promote insulin resistance, hyperglycemia, and non-alcoholic steatohepatitis.
Angelini G, Castagneto-Gissey L, Salinari S, ..., Tremaroli V, Mingrone G
Nat Commun 13 (1) 7715 [2022-12-13; online 2022-12-13]
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Conformational Change of Transcription Factors from Search to Specific Binding: A lac Repressor Case Study.
Lüking M, Elf J, Levy Y
J. Phys. Chem. B 126 (48) 9971-9984 [2022-12-08; online 2022-11-23]
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An extension to the NK fitness landscape model to study pleiotropy, epistasis, and ruggedness independently
Mehra P, Hintze A
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Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils
Högfors-Rönnholm E, Lundin D, Brambilla D, ..., Österholm P, Dopson M
Commun Earth Environ 3 (1) - [2022-12-01; online 2022-12-01]
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The role of inputs of marine wrack and carrion in sandy-beach ecosystems: a global review.
Hyndes GA, Berdan EL, Duarte C, ..., Olds A, Schlacher TA
Biol Rev Camb Philos Soc 97 (6) 2127-2161 [2022-12-00; online 2022-08-11]
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Species composition of shoreline wolf spider communities vary with salinity, but their diets vary with wrack inflow.
Hambäck PA, Cirtwill AR, Grudzinska-Sterno M, ..., Langbak M, Åhlén D
Ecol Evol 12 (12) e9701 [2022-12-00; online 2022-12-28]
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Screening patients with autoimmune endocrine disorders for cytokine autoantibodies reveals monogenic immune deficiencies.
Sjøgren T, Bratland E, Røyrvik EC, ..., Husebye ES, Wolff ASB
J. Autoimmun. 133 (-) 102917 [2022-12-00; online 2022-09-30]
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Genome-wide association and Mendelian randomization study of fibroblast growth factor 21 reveals causal associations with hyperlipidemia and possibly NASH.
Larsson SC, Michaëlsson K, Mola-Caminal M, Höijer J, Mantzoros CS
Metabolism 137 (-) 155329 [2022-12-00; online 2022-10-05]
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Cone-setting in spruce is regulated by conserved elements of the age-dependent flowering pathway.
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New Phytol. 236 (5) 1951-1963 [2022-12-00; online 2022-09-16]
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Anti-citrullinated protein antibody specificities and pulmonary fibrosis in relation to genetic loci in early rheumatoid arthritis.
Brink M, Ljung L, Hansson M, ..., Klareskog L, Rantapää-Dahlqvist S
Rheumatology (Oxford) 61 (12) 4985-4990 [2022-11-28; online 2022-05-10]
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Stage-specific transposon activity in the life cycle of the fairy-ring mushroom <i>Marasmius oreades</i>.
Hiltunen M, Ament-Velásquez SL, Ryberg M, Johannesson H
Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2208575119 [2022-11-16; online 2022-11-07]
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Meta-analysis of genome-wide association studies of hoarding symptoms in 27,537 individuals.
Strom NI, Smit DJA, Silzer T, ..., Mataix-Cols D, Cath D
Transl Psychiatry 12 (1) 479 [2022-11-15; online 2022-11-15]
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Stabilizing Mechanisms of β-Lactoglobulin in Amorphous Solid Dispersions of Indomethacin.
Kabedev A, Zhuo X, Leng D, ..., Bergström CAS, Löbmann K
Mol. Pharm. 19 (11) 3922-3933 [2022-11-07; online 2022-09-22]
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Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees.
Dyrhage K, Garcia-Montaner A, Tamarit D, ..., Webster MT, Andersson SGE
Genome Biol Evol 14 (11) - [2022-11-04; online 2022-10-21]
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The Dynamics of Adaptation to Stress from Standing Genetic Variation and de novo Mutations.
Ament-Velásquez SL, Gilchrist C, Rêgo A, ..., Rafati N, Stelkens R
Mol. Biol. Evol. 39 (11) - [2022-11-03; online 2022-11-06]
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Population dynamics and demographic history of Eurasian collared lemmings.
Lord E, Marangoni A, Baca M, ..., Fedorov VB, Dalén L
BMC Ecol Evol 22 (1) 126 [2022-11-03; online 2022-11-03]
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Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum.
Sahraei SE, Sánchez-García M, Montoliu-Nerin M, ..., Rosendahl S, Rosling A
Mycorrhiza 32 (5-6) 361-371 [2022-11-00; online 2022-09-26]
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Translatome profiling in fatal familial insomnia implicates TOR signaling in somatostatin neurons.
Bauer S, Dittrich L, Kaczmarczyk L, ..., Benfeitas R, Jackson WS
Life Sci. Alliance 5 (11) - [2022-11-00; online 2022-10-03]
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Strong Association of Combined Genetic Deficiencies in the Classical Complement Pathway With Risk of Systemic Lupus Erythematosus and Primary Sjögren's Syndrome.
Lundtoft C, Sjöwall C, Rantapää-Dahlqvist S, ..., Leonard D, Rönnblom L
Arthritis & rheumatology (Hoboken, N.J.) 74 (11) 1842-1850 [2022-11-00; online 2022-10-07]
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Mer-tyrosine kinase: a novel susceptibility gene for SLE related end-stage renal disease.
Yavuz S, Pucholt P, Sandling JK, ..., Lindblad-Toh K, Rönnblom L
Lupus Sci Med 9 (1) - [2022-11-00; online 2022-11-05]
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ZEB2 haploinsufficient Mowat-Wilson syndrome induced pluripotent stem cells show disrupted GABAergic transcriptional regulation and function.
Schuster J, Klar J, Khalfallah A, ..., Birnir B, Dahl N
Front Mol Neurosci 15 (-) 988993 [2022-10-24; online 2022-10-24]
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Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level.
Gutiérrez-Valencia J, Fracassetti M, Berdan EL, ..., Arroyo J, Slotte T
Curr. Biol. 32 (20) 4360-4371.e6 [2022-10-24; online 2022-09-09]
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Rapid antibiotic susceptibility testing and species identification for mixed samples.
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Nat Commun 13 (1) 6215 [2022-10-20; online 2022-10-20]
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SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencing.
Mannsverk S, Bergholm J, Palanisamy N, ..., Lindh J, Lennerstrand J
Virol J 19 (1) 164 [2022-10-18; online 2022-10-18]
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Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA.
Behra PRK, Pettersson BMF, Ramesh M, ..., Dasgupta S, Kirsebom LA
BMC Genomics 23 (1) 704 [2022-10-15; online 2022-10-15]
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Spatiotemporal variations in retrovirus-host interactions among Darwin's finches.
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Pax3 loss of function delays tumour progression in kRAS-induced zebrafish rhabdomyosarcoma models.
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Sci Rep 12 (1) 17149 [2022-10-13; online 2022-10-13]
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Dormant SOX9-positive cells facilitate MYC-driven recurrence of medulloblastoma.
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Calcium and magnesium in drinking water and risk of myocardial infarction and stroke-a population-based cohort study.
Helte E, Säve-Söderbergh M, Larsson SC, Åkesson A
Am. J. Clin. Nutr. 116 (4) 1091-1100 [2022-10-06; online 2022-07-12]
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House crickets (Othroptera: Gryllidae: <i>Acheta domesticus</i>) reared in small-scale laboratory conditions harbour limited viral flora
Cholleti H, Vaga M, Jansson A, Blomström AL, Berg M
Journal of Insects as Food and Feed 8 (10) 1149-1155 [2022-10-04; online 2022-10-04]
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The effects of pH on the production of volatile fatty acids and microbial dynamics in long-term reactor operation.
Atasoy M, Cetecioglu Z
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Modest Conformity Between Self-Reporting of Bristol Stool Form and Fecal Consistency Measured by Stool Water Content in Irritable Bowel Syndrome and a FODMAP and Gluten Trial.
Nordin E, Hellström PM, Brunius C, Landberg R
Am J Gastroenterol 117 (10) 1668-1674 [2022-10-01; online 2022-08-12]
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Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in human cells.
Geng K, Merino LG, Wedemann L, ..., White RJ, Kutter C
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Salinity induces discontinuous protoxylem via a DELLA-dependent mechanism promoting salt tolerance in Arabidopsis seedlings.
Augstein F, Carlsbecker A
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Reproductive homing and fine‐scaled genetic structuring of anadromous Baltic Sea perch ( <i>Perca fluviatilis</i> )
Hall M, Koch‐Schmidt P, Larsson P, ..., Yıldırım Y, Sunde J
Fisheries Management Eco 29 (5) 586-596 [2022-10-00; online 2022-03-28]
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Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system.
Pontiller B, Martínez-García S, Joglar V, ..., Teira E, Pinhassi J
ISME J 16 (10) 2360-2372 [2022-10-00; online 2022-07-08]
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Prostate cancer disease recurrence after radical prostatectomy is associated with HLA type and local cytomegalovirus immunity.
Classon J, Zamboni M, Engblom C, ..., Mold J, Frisén J
Mol Oncol 16 (19) 3452-3464 [2022-10-00; online 2022-08-31]
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Patterns of community composition and diversity in latent fungi of living Quercus serrata trunks across a range of oak wilt prevalence and climate variables in Japan
Fukasawa Y, Matsukura K, Stephan JG, ..., Yamashita S, Ushio M
Fungal Ecology 59 (-) 101095 [2022-10-00; online 2022-10-00]
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Laccaria bicolor pectin methylesterases are involved in ectomycorrhiza development with Populus tremula × Populus tremuloides.
Chowdhury J, Kemppainen M, Delhomme N, ..., Pardo AG, Lundberg-Felten J
New Phytol. 236 (2) 639-655 [2022-10-00; online 2022-07-27]
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Global patterns and rates of habitat transitions across the eukaryotic tree of life.
Jamy M, Biwer C, Vaulot D, ..., Massana R, Burki F
Nat Ecol Evol 6 (10) 1458-1470 [2022-10-00; online 2022-08-04]
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Genome-wide association study of liver enzyme elevation in an extended cohort of rheumatoid arthritis patients starting low-dose methotrexate.
Cavalli M, Eriksson N, Sundbaum JK, ..., Hallberg P, Wadelius M
Pharmacogenomics 23 (15) 813-820 [2022-10-00; online 2022-09-07]
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Elevation and plant species identity jointly shape a diverse arbuscular mycorrhizal fungal community in the High Arctic.
Rasmussen PU, Abrego N, Roslin T, ..., Hugerth LW, Tack AJM
New Phytol. 236 (2) 671-683 [2022-10-00; online 2022-07-15]
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Discovery of druggable cancer-specific pathways with application in acute myeloid leukemia.
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Gigascience 11 (-) - [2022-09-29; online 2022-09-30]
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Loss of SNAI1 induces cellular plasticity in invasive triple-negative breast cancer cells.
Tsirigoti C, Ali MM, Maturi V, Heldin CH, Moustakas A
Cell Death Dis 13 (9) 832 [2022-09-28; online 2022-09-28]
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Parasitic strongyle nemabiome communities in wild ruminants in Sweden.
Halvarsson P, Baltrušis P, Kjellander P, Höglund J
Parasit Vectors 15 (1) 341 [2022-09-27; online 2022-09-27]
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A novel neo-sex chromosome in Sylvietta brachyura (Macrosphenidae) adds to the extraordinary avian sex chromosome diversity among Sylvioidea songbirds.
Sigeman H, Zhang H, Ali Abed S, Hansson B
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Meiotic drive is associated with sexual incompatibility in Neurospora.
Vogan AA, Svedberg J, Grudzinska-Sterno M, Johannesson H
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Multifocal Neuroblastoma and Central Hypoventilation in An Infant with Germline ALK F1174I Mutation.
Djos A, Treis D, Fransson S, ..., Kogner P, Martinsson T
Diagnostics 12 (9) - [2022-09-19; online 2022-09-19]
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Stenberg H, Hellman S, Lindström L, ..., Hayer J, Malmberg M
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Serine Protease Inhibitors Restrict Host Susceptibility to SARS-CoV-2 Infections.
Rosendal E, Mihai IS, Becker M, ..., Överby AK, Lenman A
MBio 13 (3) e0089222 [2022-06-28; online 2022-05-09]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service] Microbial Single Cell Genomics [Service]
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Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests.
Law SR, Serrano AR, Daguerre Y, ..., Street NR, Hurry V
Proc. Natl. Acad. Sci. U.S.A. 119 (26) e2118852119 [2022-06-28; online 2022-06-21]
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Membrane insertion mechanism of the caveola coat protein Cavin1.
Liu KC, Pace H, Larsson E, ..., Hubert M, Lundmark R
Proc. Natl. Acad. Sci. U.S.A. 119 (25) e2202295119 [2022-06-21; online 2022-06-13]
Bioinformatics Support for Computational Resources [Service]
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MYCN induces cell-specific tumorigenic growth in RB1-proficient human retinal organoid and chicken retina models of retinoblastoma.
Blixt MKE, Hellsand M, Konjusha D, ..., Ring H, Hallböök F
Oncogenesis 11 (1) 34 [2022-06-21; online 2022-06-21]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.
Kutschera VE, Kierczak M, van der Valk T, ..., Dalén L, Díez-Del-Molino D
BMC Bioinformatics 23 (1) 228 [2022-06-13; online 2022-06-13]
Bioinformatics Long-term Support WABI [Technology development] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Technology development]
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Asgard archaea shed light on the evolutionary origins of the eukaryotic ubiquitin-ESCRT machinery.
Hatano T, Palani S, Papatziamou D, ..., Robinson NP, Balasubramanian M
Nat Commun 13 (1) 3398 [2022-06-13; online 2022-06-13]
Bioinformatics Support for Computational Resources [Service]
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Long-Term Warming of Baltic Sea Coastal Waters Affects Bacterial Communities in Bottom Water and Sediments Differently.
Seidel L, Broman E, Ståhle M, ..., Hylander S, Dopson M
Front Microbiol 13 (-) 873281 [2022-06-10; online 2022-06-10]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Unusual Magnetic Features in Two-Dimensional Fe5GeTe2 Induced by Structural Reconstructions.
Ershadrad S, Ghosh S, Wang D, Kvashnin Y, Sanyal B
J Phys Chem Lett 13 (22) 4877-4883 [2022-06-09; online 2022-05-26]
Bioinformatics Support for Computational Resources [Service]
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Disturbance-based management of ecosystem services and disservices in partial nitritation-anammox biofilms.
Suarez C, Sedlacek CJ, Gustavsson DJI, ..., Hermansson M, Persson F
NPJ Biofilms Microbiomes 8 (1) 47 [2022-06-08; online 2022-06-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Bioarchaeological evidence of one of the earliest Islamic burials in the Levant.
Srigyan M, Bolívar H, Ureña I, ..., Günther T, Valdiosera C
Commun Biol 5 (1) 554 [2022-06-07; online 2022-06-07]
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Developmental landscape of human forebrain at a single-cell level identifies early waves of oligodendrogenesis.
van Bruggen D, Pohl F, Langseth CM, ..., Sundström E, Castelo-Branco G
Dev. Cell 57 (11) 1421-1436.e5 [2022-06-06; online 2022-05-05]
Bioinformatics Support for Computational Resources [Service] In Situ Sequencing (ISS) [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Robust derivation of transplantable dopamine neurons from human pluripotent stem cells by timed retinoic acid delivery.
Alekseenko Z, Dias JM, Adler AF, ..., Parmar M, Ericson J
Nat Commun 13 (1) 3046 [2022-06-01; online 2022-06-01]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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The mosaic oat genome gives insights into a uniquely healthy cereal crop.
Kamal N, Tsardakas Renhuldt N, Bentzer J, ..., Spannagl M, Sirijovski N
Nature 606 (7912) 113-119 [2022-06-00; online 2022-05-18]
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TGFβ selects for pro-stemness over pro-invasive phenotypes during cancer cell epithelial-mesenchymal transition.
Tsubakihara Y, Ohata Y, Okita Y, ..., Heldin CH, Moustakas A
Mol Oncol 16 (12) 2330-2354 [2022-06-00; online 2022-04-10]
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Loss of Nexilin function leads to a recessive lethal fetal cardiomyopathy characterized by cardiomegaly and endocardial fibroelastosis.
Johansson J, Frykholm C, Ericson K, ..., Bondeson ML, Wilbe M
Am. J. Med. Genet. A 188 (6) 1676-1687 [2022-06-00; online 2022-02-15]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Uppsala [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]