Genomics

Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14.

Martín-Hernández GC, Müller B, Chmielarz M, ..., Viehweger A, Passoth V

Genomics 113 (6) 4022-4027 [2021-10-11; online 2021-10-11]

NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Novel genome reveals susceptibility of popular gamebird, the red-legged partridge (Alectoris rufa, Phasianidae), to climate change.

Chattopadhyay B, Forcina G, Garg KM, ..., Barbanera F, Rheindt FE

Genomics 113 (5) 3430-3438 [2021-09-00; online 2021-08-13]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Gene regulation of the avian malaria parasite Plasmodium relictum, during the different stages within the mosquito vector.

Sekar V, Rivero A, Pigeault R, ..., Ahren D, Hellgren O

Genomics 113 (4) 2327-2337 [2021-07-00; online 2021-05-21]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

First de novo whole genome sequencing and assembly of the pink-footed goose.

Pujolar JM, Dalén L, Olsen RA, Hansen MM, Madsen J

Genomics 110 (2) 75-79 [2018-03-00; online 2017-08-30]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals.

Cavalli M, Pan G, Nord H, ..., Wallerman O, Wadelius C

Genomics 107 (6) 248-254 [2016-06-00; online 2016-04-30]

Bioinformatics Compute and Storage [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Amplification-free sequencing of cell-free DNA for prenatal non-invasive diagnosis of chromosomal aberrations.

Karlsson K, Sahlin E, Iwarsson E, ..., Nordenskjöld M, Linnarsson S

Genomics 105 (3) 150-158 [2015-03-00; online 2014-12-30]

NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

Temporal profiling of cytokine-induced genes in pancreatic β-cells by meta-analysis and network inference.

Lopes M, Kutlu B, Miani M, ..., Bontempi G, Eizirik DL

Genomics 103 (4) 264-275 [2014-04-00; online 2014-01-28]

NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure

Genome wide analysis reveals association of a FTO gene variant with epigenetic changes.

Almén MS, Jacobsson JA, Moschonis G, ..., Fredriksson R, Schiöth HB

Genomics 99 (3) 132-137 [2012-03-00; online 2012-01-12]

NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure