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Ewels P, Magnusson M, Lundin S, Käller M
Bioinformatics 32 (19) 3047-3048 [2016-10-01; online 2016-06-16]
Fast and accurate quality control is essential for studies involving next-generation sequencing data. Whilst numerous tools exist to quantify QC metrics, there is no common approach to flexibly integrate these across tools and large sample sets. Assessing analysis results across an entire project can be time consuming and error prone; batch effects and outlier samples can easily be missed in the early stages of analysis. We present MultiQC, a tool to create a single report visualising output from multiple tools across many samples, enabling global trends and biases to be quickly identified. MultiQC can plot data from many common bioinformatics tools and is built to allow easy extension and customization. MultiQC is available with an GNU GPLv3 license on GitHub, the Python Package Index and Bioconda. Documentation and example reports are available at http://multiqc.info phil.ewels@scilifelab.se.
Bioinformatics Support for Computational Resources [Service]
NGI Stockholm (Genomics Applications) [Technology development]
NGI Stockholm (Genomics Production) [Technology development]
National Genomics Infrastructure [Technology development]
PubMed 27312411
DOI 10.1093/bioinformatics/btw354
Crossref 10.1093/bioinformatics/btw354
pii: btw354
pmc: PMC5039924