Clinical Genomics Linköping

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SciLifeLab Infrastructure Unit Since 2019.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2019

Ended: Current

Year 2022

PubMed DOI Crossref
A new cut&run low volume-urea (LoV-U) protocol optimized for transcriptional co-factors uncovers Wnt/b-catenin tissue-specific genomic targets.
Zambanini G, Nordin A, Jonasson M, Pagella P, Cantù C
Development - (-) - [2022-11-10; online 2022-11-10]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Case report: Two sisters with a germline CHEK2 variant and distinct endocrine neoplasias.
Vallera RD, Ding Y, Hatanpaa KJ, ..., Dahia PLM, Ghayee HK
Front Endocrinol (Lausanne) 13 (-) 1024108 [2022-11-07; online 2022-11-07]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
The oncogenic transcription factor FOXQ1 is a differential regulator of Wnt target genes.
Pizzolato G, Moparthi L, Söderholm S, Cantù C, Koch S
J. Cell. Sci. 135 (19) - [2022-10-01; online 2022-10-10]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Implementing precision medicine in a regionally organized healthcare system in Sweden.
Fioretos T, Wirta V, Cavelier L, ..., Edsjö A, Rosenquist R
Nat. Med. 28 (10) 1980-1982 [2022-10-00; online 2022-09-20]
Clinical Genomics Gothenburg [Service] Clinical Genomics Linköping [Service] Clinical Genomics Umeå [Service] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Methylation associated with long- or short-term survival in glioblastoma patients from the Nordic phase 3 trial.
Łysiak M, Das J, Malmström A, Söderkvist P
Front Genet 13 (-) 934519 [2022-08-25; online 2022-08-25]
Bioinformatics Compute and Storage [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Autosomal recessive congenital hereditary corneal dystrophy associated with a novel SLC4A11 mutation in two consanguineous Tunisian families.
Chibani Z, Abid IZ, Söderkvist P, Feki J, Aifa MH
Br J Ophthalmol 106 (2) 281-287 [2022-02-00; online 2021-04-20]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Genetic Alterations in Mitochondrial DNA Are Complementary to Nuclear DNA Mutations in Pheochromocytomas.
Tabebi M, Łysiak M, Dutta RK, ..., Gimm O, Söderkvist P
Cancers (Basel) 14 (2) - [2022-01-06; online 2022-01-06]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Loss of SDHB Induces a Metabolic Switch in the hPheo1 Cell Line toward Enhanced OXPHOS.
Tabebi M, Kumar Dutta R, Skoglund C, Söderkvist P, Gimm O
Int J Mol Sci 23 (1) - [2022-01-05; online 2022-01-05]
Clinical Genomics Linköping [Service]

Year 2021

PubMed DOI Crossref
Increased diagnostic sensitivity of palpation-guided thyroid nodule fine-needle aspiration cytology by BRAF V600E-mutation analysis.
Gimm O, Ivansson K, Beka E, ..., Garvin S, Söderkvist P
J Pathol Clin Res 7 (6) 556-564 [2021-11-00; online 2021-06-22]
Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
5´XP sRNA-seq: efficient identification of transcripts with and without 5´ phosphorylation reveals evolutionary conserved small RNA.
Kugelberg U, Nätt D, Skog S, Kutter C, Öst A
RNA Biol 18 (11) 1588-1599 [2021-11-00; online 2020-12-31]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Genetic Variant Score and Arrhythmogenic Right Ventricular Cardiomyopathy Phenotype in Plakophilin-2 Mutation Carriers.
Svensson A, Platonov PG, Haugaa KH, ..., Svendsen JH, Gunnarsson C
Cardiology 146 (6) 763-771 [2021-09-01; online 2021-09-01]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
EBF1 and PAX5 control pro-B cell expansion via opposing regulation of the Myc gene.
Somasundaram R, Jensen CT, Tingvall-Gustafsson J, ..., Ungerbäck J, Sigvardsson M
Blood 137 (22) 3037-3049 [2021-06-03; online 2021-02-24]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
B Lymphocyte Specification Is Preceded by Extensive Epigenetic Priming in Multipotent Progenitors.
Strid T, Okuyama K, Tingvall-Gustafsson J, ..., Ungerbäck J, Sigvardsson M
J. Immunol. 206 (11) 2700-2713 [2021-06-01; online 2021-05-21]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Complement-Opsonized HIV Modulates Pathways Involved in Infection of Cervical Mucosal Tissues: A Transcriptomic and Proteomic Study.
Svanberg C, Ellegård R, Crisci E, ..., Shankar EM, Larsson M
Front Immunol 12 (-) 625649 [2021-05-20; online 2021-05-20]
Bioinformatics Compute and Storage [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
X-chromosome variants are associated with aldosterone producing adenomas.
Dutta RK, Larsson M, Arnesen T, ..., Gimm O, Söderkvist P
Sci Rep 11 (1) 10562 [2021-05-18; online 2021-05-18]
Bioinformatics Compute and Storage [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Association between inflammasome-related polymorphisms and psoriatic arthritis.
Juneblad K, Kastbom A, Johansson L, ..., Söderkvist P, Alenius G
Scand. J. Rheumatol. 50 (3) 206-212 [2021-05-00; online 2020-12-10]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Deletions on Chromosome Y and Downregulation of the SRY Gene in Tumor Tissue Are Associated with Worse Survival of Glioblastoma Patients.
Łysiak M, Smits A, Roodakker KR, ..., Söderkvist P, Malmström A
Cancers (Basel) 13 (7) - [2021-03-31; online 2021-03-31]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Sex Disparities in MGMT Promoter Methylation and Survival in Glioblastoma: Further Evidence from Clinical Cohorts.
Smits A, Lysiak M, Magnusson A, ..., Söderkvist P, Malmström A
J Clin Med 10 (4) - [2021-02-03; online 2021-02-03]
Clinical Genomics Linköping [Service]

Year 2020

PubMed DOI Crossref
Activation of RAS Signalling is Associated with Altered Cell Adhesion in Phaeochromocytoma.
Rossitti HM, Dutta RK, Larsson C, ..., Söderkvist P, Gimm O
Int J Mol Sci 21 (21) 8072 [2020-10-29; online 2020-10-29]
Bioinformatics Compute and Storage [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
ABCB1 single-nucleotide variants and survival in patients with glioblastoma treated with radiotherapy concomitant with temozolomide.
Malmström A, Łysiak M, Åkesson L, ..., Green H, Söderkvist P
Pharmacogenomics J. 20 (2) 213-219 [2020-04-00; online 2019-10-17]
Bioinformatics Compute and Storage [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Do we really know who has an MGMT methylated glioma? Results of an international survey regarding use of MGMT analyses for glioma.
Malmström A, Łysiak M, Kristensen BW, ..., Henriksson R, Söderkvist P
Neurooncol Pract 7 (1) 68-76 [2020-01-00; online 2019-09-24]
Clinical Genomics Linköping [Service]

Year 2019

PubMed DOI Crossref
Novel BEST1 gene mutations associated with two different forms of macular dystrophy in Tunisian families.
Chibani Z, Abid IZ, Molbaek A, ..., Feki J, Hmani-Aifa M
Clin Exp Ophthalmol 47 (8) 1063-1073 [2019-11-00; online 2019-07-24]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Assessment of genetic and non-genetic risk factors for venous thromboembolism in glioblastoma - The predictive significance of B blood group.
Heenkenda MK, Malmström A, Lysiak M, ..., Uppugunduri S, Osman A
Thromb. Res. 183 (-) 136-142 [2019-11-00; online 2019-10-22]
Clinical Genomics Linköping [Service]
PubMed DOI Crossref
A somatic mutation in CLCN2 identified in a sporadic aldosterone-producing adenoma.
Dutta RK, Arnesen T, Heie A, ..., Söderkvist P, Gimm O
Eur. J. Endocrinol. 181 (5) K37-K41 [2019-11-00; online 2019-09-07]
Clinical Genomics Linköping [Service]

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Publications 8.1.1