Clinical Genomics Linköping

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SciLifeLab Infrastructure Unit Since 2019.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2019

Ended: Current

Year 2025

PubMed DOI Crossref
Antimicrobial resistance and serotype distribution of Salmonella spp. isolated from fresh foods in Cambodia.
Huoy L, Nasirzadeh L, Phan K, ..., Rudloff EB, Boqvist S
J Appl Microbiol - (-) - [2025-06-03; online 2025-06-03]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Methodological aspects of investigating the resistome in pig farm environments.
Ladyhina V, Rajala E, Sternberg-Lewerin S, ..., Bongcam-Rudloff E, Dicksved J
J Microbiol Methods 230-231 (-) 107103 [2025-02-13; online 2025-02-13]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Modulation of biological activities in adipose derived stem cells by histone deacetylation.
Abdallah S, Tabebi M, Qanadilo S, ..., Elmasry M, El-Serafi A
Sci Rep 15 (1) 3629 [2025-01-29; online 2025-01-29]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]

Year 2024

PubMed DOI Crossref
A landscape of X-inactivation during human T cell development.
Gylemo B, Bensberg M, Hennings V, ..., Ekwall O, Nestor CE
Nat Commun 15 (1) 10527 [2024-12-04; online 2024-12-04]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Duloxetine enhances PAX6 expression and suppresses innate immune responses in murine LPS-induced corneal inflammation.
Moustardas P, Abbasi M, Javidjam D, ..., Aberdam D, Lagali N
Ocul Surf 34 (-) 225-234 [2024-10-00; online 2024-08-08]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Multi-parametric atlas of the pre-metastatic liver for prediction of metastatic outcome in early-stage pancreatic cancer.
Bojmar L, Zambirinis CP, Hernandez JM, ..., Jarnagin WR, Lyden D
Nat. Med. 30 (8) 2170-2180 [2024-08-00; online 2024-06-28]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
A DNA Methylation Signature from Buccal Swabs to Identify Tuberculosis Infection.
Karlsson L, Öhrnberg I, Sayyab S, ..., Paues J, Lerm M
J. Infect. Dis. - (-) - [2024-07-04; online 2024-07-04]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
NOS2-derived low levels of NO drive psoriasis pathogenesis.
Köhler I, Bivik Eding C, Kasic NK, Verma D, Enerbäck C
Cell Death Dis 15 (6) 449 [2024-06-26; online 2024-06-26]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Tumor-matched and unmatched cancer associated fibroblasts exhibit differential effect on proliferation and FMOD and MMP9 gene expression in head and neck squamous cell carcinoma cells when cocultured in spheroids.
Rademaekers M, Johansson EO, Johansson E, Roberg K, Wiechec E
Cancer Cell Int 24 (1) 190 [2024-05-31; online 2024-05-31]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Exhaustive identification of genome-wide binding events of transcriptional regulators.
Nordin A, Pagella P, Zambanini G, Cantù C
Nucleic Acids Res. 52 (7) e40 [2024-04-24; online 2024-03-19]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
MicroRNA-155 mediates multiple gene regulations pertinent to the role of human adipose-derived mesenchymal stem cells in skin regeneration.
Shahin H, Belcastro L, Das J, ..., Elmasry M, El-Serafi AT
Front Bioeng Biotechnol 12 (-) 1328504 [2024-03-18; online 2024-03-18]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Prognostic value of hypoxia-responsive gene expression profile in patients diagnosed with head and neck squamous cell carcinoma.
Matic N, Pettersson L, Sellebjerg F, ..., Roberg K, Wiechec E
Transl Oncol 39 (-) 101841 [2024-01-00; online 2023-11-27]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Year 2023

PubMed DOI Crossref
Modified N-acyl-L-homoserine lactone compounds abrogate Las-dependent quorum-sensing response in human pathogen Pseudomonas aeruginosa.
Ballante F, Turkina MV, Ntzouni M, Magnusson KE, Vikström E
Front Mol Biosci 10 (-) 1264773 [2023-10-16; online 2023-10-16]
Chemical Biology Consortium Sweden (CBCS) [Collaborative] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Genome-wide DNA methylation profiling in Lyme neuroborreliosis reveals altered methylation patterns of HLA genes.
Henningsson AJ, Hellberg S, Lerm M, Sayyab S
J. Infect. Dis. - (-) - [2023-10-12; online 2023-10-12]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Selected β-glucans act as immune-training agents by improving anti-mycobacterial activity in human macrophages - a pilot study.
Braian C, Karlsson L, Das J, Lerm M
J Innate Immun 15 (1) 751-764 [2023-09-21; online 2023-09-21]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Epigenetic modifications appear in the human placenta following anxiety and depression during pregnancy.
Martinez CA, Marteinsdottir I, Josefsson A, ..., Theodorsson E, Rodriguez-Martinez H
Placenta 140 (-) 72-79 [2023-09-07; online 2023-08-01]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Differential DNA Methylation of MicroRNA-Encoding Genes in Psoriatic Epidermis Highlights the Wnt Pathway.
Verma D, Kasic NK, Jeppsson F, ..., Das J, Enerbäck C
J. Invest. Dermatol. 143 (8) 1594-1597.e14 [2023-08-00; online 2023-02-27]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Domain landscapes of somatic NF1 mutations in pheochromocytoma and paraganglioma.
Tabebi M, Frikha F, Volpe M, Gimm O, Söderkvist P
Gene 872 (-) 147432 [2023-07-01; online 2023-04-14]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Mating modifies the expression of crucial oxidative-reductive transcripts in the pig oviductal sperm reservoir: is the female ensuring sperm survival?
Álvarez-Rodríguez M, Roca J, Martínez EA, Rodríguez-Martínez H
Front Endocrinol (Lausanne) 14 (-) 1042176 [2023-06-07; online 2023-06-07]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Stress-sensitive dynamics of miRNAs and Elba1 in Drosophila embryogenesis.
Örkenby L, Skog S, Ekman H, ..., Nätt D, Öst A
Mol. Syst. Biol. 19 (5) e11148 [2023-05-09; online 2023-03-20]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
methylR: a graphical interface for comprehensive DNA methylation array data analysis.
Volpe M, Das J
Bioinformatics 39 (4) - [2023-04-03; online 2023-04-12]
Clinical Genomics [Technology development] Clinical Genomics Linköping [Technology development]
PubMed DOI Crossref
Immune-related microRNAs in breast milk and their relation to regulatory T cells in breastfed children.
Ahlberg E, Martí M, Govindaraj D, ..., Jenmalm MC, Tingö L
Pediatr Allergy Immunol 34 (4) e13952 [2023-04-00; online 2023-04-27]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
miRNome and Proteome Profiling of Human Keratinocytes and Adipose Derived Stem Cells Proposed miRNA-Mediated Regulations of Epidermal Growth Factor and Interleukin 1-Alpha.
Shahin H, Abdallah S, Das J, ..., Elmasry M, El-Serafi AT
Int J Mol Sci 24 (5) - [2023-03-04; online 2023-03-04]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Nuclear and mitochondrial DNA alterations in pheochromocytomas and paragangliomas, and their potential treatment.
Tabebi M, Söderkvist P, Gimm O
Endocr. Relat. Cancer 30 (1) - [2023-01-01; online 2022-12-08]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]

Year 2022

PubMed DOI Crossref
A new cut&run low volume-urea (LoV-U) protocol optimized for transcriptional co-factors uncovers Wnt/b-catenin tissue-specific genomic targets.
Zambanini G, Nordin A, Jonasson M, Pagella P, Cantù C
Development - (-) - [2022-11-10; online 2022-11-10]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Case report: Two sisters with a germline CHEK2 variant and distinct endocrine neoplasias.
Vallera RD, Ding Y, Hatanpaa KJ, ..., Dahia PLM, Ghayee HK
Front Endocrinol (Lausanne) 13 (-) 1024108 [2022-11-07; online 2022-11-07]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
The oncogenic transcription factor FOXQ1 is a differential regulator of Wnt target genes.
Pizzolato G, Moparthi L, Söderholm S, Cantù C, Koch S
J. Cell. Sci. 135 (19) - [2022-10-01; online 2022-10-10]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Implementing precision medicine in a regionally organized healthcare system in Sweden.
Fioretos T, Wirta V, Cavelier L, ..., Edsjö A, Rosenquist R
Nat. Med. 28 (10) 1980-1982 [2022-10-00; online 2022-09-20]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Linköping [Service] Clinical Genomics Stockholm [Collaborative] Clinical Genomics Umeå [Service] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Methylation associated with long- or short-term survival in glioblastoma patients from the Nordic phase 3 trial.
Łysiak M, Das J, Malmström A, Söderkvist P
Front Genet 13 (-) 934519 [2022-08-25; online 2022-08-25]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Autosomal recessive congenital hereditary corneal dystrophy associated with a novel SLC4A11 mutation in two consanguineous Tunisian families.
Chibani Z, Abid IZ, Söderkvist P, Feki J, Aifa MH
Br J Ophthalmol 106 (2) 281-287 [2022-02-00; online 2021-04-20]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Genetic Alterations in Mitochondrial DNA Are Complementary to Nuclear DNA Mutations in Pheochromocytomas.
Tabebi M, Łysiak M, Dutta RK, ..., Gimm O, Söderkvist P
Cancers (Basel) 14 (2) - [2022-01-06; online 2022-01-06]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Loss of SDHB Induces a Metabolic Switch in the hPheo1 Cell Line toward Enhanced OXPHOS.
Tabebi M, Kumar Dutta R, Skoglund C, Söderkvist P, Gimm O
Int J Mol Sci 23 (1) - [2022-01-05; online 2022-01-05]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Year 2021

PubMed DOI Crossref
Increased diagnostic sensitivity of palpation-guided thyroid nodule fine-needle aspiration cytology by BRAF V600E-mutation analysis.
Gimm O, Ivansson K, Beka E, ..., Garvin S, Söderkvist P
J Pathol Clin Res 7 (6) 556-564 [2021-11-00; online 2021-06-22]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
5´XP sRNA-seq: efficient identification of transcripts with and without 5´ phosphorylation reveals evolutionary conserved small RNA.
Kugelberg U, Nätt D, Skog S, Kutter C, Öst A
RNA Biol 18 (11) 1588-1599 [2021-11-00; online 2020-12-31]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Genetic Variant Score and Arrhythmogenic Right Ventricular Cardiomyopathy Phenotype in Plakophilin-2 Mutation Carriers.
Svensson A, Platonov PG, Haugaa KH, ..., Svendsen JH, Gunnarsson C
Cardiology 146 (6) 763-771 [2021-09-01; online 2021-09-01]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
EBF1 and PAX5 control pro-B cell expansion via opposing regulation of the Myc gene.
Somasundaram R, Jensen CT, Tingvall-Gustafsson J, ..., Ungerbäck J, Sigvardsson M
Blood 137 (22) 3037-3049 [2021-06-03; online 2021-02-24]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
B Lymphocyte Specification Is Preceded by Extensive Epigenetic Priming in Multipotent Progenitors.
Strid T, Okuyama K, Tingvall-Gustafsson J, ..., Ungerbäck J, Sigvardsson M
J. Immunol. 206 (11) 2700-2713 [2021-06-01; online 2021-05-21]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Complement-Opsonized HIV Modulates Pathways Involved in Infection of Cervical Mucosal Tissues: A Transcriptomic and Proteomic Study.
Svanberg C, Ellegård R, Crisci E, ..., Shankar EM, Larsson M
Front Immunol 12 (-) 625649 [2021-05-20; online 2021-05-20]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
X-chromosome variants are associated with aldosterone producing adenomas.
Dutta RK, Larsson M, Arnesen T, ..., Gimm O, Söderkvist P
Sci Rep 11 (1) 10562 [2021-05-18; online 2021-05-18]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Association between inflammasome-related polymorphisms and psoriatic arthritis.
Juneblad K, Kastbom A, Johansson L, ..., Söderkvist P, Alenius G
Scand. J. Rheumatol. 50 (3) 206-212 [2021-05-00; online 2020-12-10]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Deletions on Chromosome Y and Downregulation of the SRY Gene in Tumor Tissue Are Associated with Worse Survival of Glioblastoma Patients.
Łysiak M, Smits A, Roodakker KR, ..., Söderkvist P, Malmström A
Cancers (Basel) 13 (7) - [2021-03-31; online 2021-03-31]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Sex Disparities in MGMT Promoter Methylation and Survival in Glioblastoma: Further Evidence from Clinical Cohorts.
Smits A, Lysiak M, Magnusson A, ..., Söderkvist P, Malmström A
J Clin Med 10 (4) - [2021-02-03; online 2021-02-03]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Year 2020

PubMed DOI Crossref
Activation of RAS Signalling is Associated with Altered Cell Adhesion in Phaeochromocytoma.
Rossitti HM, Dutta RK, Larsson C, ..., Söderkvist P, Gimm O
Int J Mol Sci 21 (21) 8072 [2020-10-29; online 2020-10-29]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
ABCB1 single-nucleotide variants and survival in patients with glioblastoma treated with radiotherapy concomitant with temozolomide.
Malmström A, Łysiak M, Åkesson L, ..., Green H, Söderkvist P
Pharmacogenomics J. 20 (2) 213-219 [2020-04-00; online 2019-10-17]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Do we really know who has an MGMT methylated glioma? Results of an international survey regarding use of MGMT analyses for glioma.
Malmström A, Łysiak M, Kristensen BW, ..., Henriksson R, Söderkvist P
Neurooncol Pract 7 (1) 68-76 [2020-01-00; online 2019-09-24]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Year 2019

PubMed DOI Crossref
Novel BEST1 gene mutations associated with two different forms of macular dystrophy in Tunisian families.
Chibani Z, Abid IZ, Molbaek A, ..., Feki J, Hmani-Aifa M
Clin Exp Ophthalmol 47 (8) 1063-1073 [2019-11-00; online 2019-07-24]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Assessment of genetic and non-genetic risk factors for venous thromboembolism in glioblastoma - The predictive significance of B blood group.
Heenkenda MK, Malmström A, Lysiak M, ..., Uppugunduri S, Osman A
Thromb. Res. 183 (-) 136-142 [2019-11-00; online 2019-10-22]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
A somatic mutation in CLCN2 identified in a sporadic aldosterone-producing adenoma.
Dutta RK, Arnesen T, Heie A, ..., Söderkvist P, Gimm O
Eur. J. Endocrinol. 181 (5) K37-K41 [2019-11-00; online 2019-09-07]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Year 2012

PubMed
The science of librarianship. University of Wales at Aberystwyth, July 31, 1917.
Osler W
J Med Libr Assoc 100 (4 Suppl) A [2012-10-00; online 2013-03-21]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
SciLifeLab Data Centre
Publications 9.5.1