Nat. Methods

ISSN	1548-7105
ISSN-L	1548-7091
IUID	d46cdab5637e460cb1705a9cc0e6b3a4
Modified	2020-11-27T13:14:05.165Z
Created	2017-05-09T09:12:40.673Z

Year 2024

PubMed DOI Crossref

Building pangenome graphs.

Garrison E, Guarracino A, Heumos S, ..., Williams RW, Prins P

Nat. Methods - (-) - [2024-10-21; online 2024-10-21]

Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]

PubMed DOI Crossref

Predicting glycan structure from tandem mass spectrometry via deep learning.

Urban J, Jin C, Thomsson KA, ..., Fadda E, Bojar D

Nat. Methods 21 (7) 1206-1215 [2024-07-00; online 2024-07-01]

Glycoproteomics and MS Proteomics [Collaborative]

PubMed DOI Crossref

Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.

Wernersson E, Gelali E, Girelli G, ..., Crosetto N, Bienko M

Nat. Methods - (-) - [2024-06-06; online 2024-06-06]

Integrated Microscopy Technologies Stockholm [Technology development] Spatial Proteomics [Service]

PubMed DOI Crossref

Community-developed checklists for publishing images and image analyses.

Schmied C, Nelson MS, Avilov S, ..., Tischer C, Jambor HK

Nat. Methods 21 (2) 170-181 [2024-02-00; online 2023-09-14]

Integrated Microscopy Technologies Gothenburg [Service]

Year 2023

PubMed DOI Crossref

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.

Vromman M, Anckaert J, Bortoluzzi S, ..., Vandesompele J, Volders PJ

Nat. Methods 20 (8) 1159-1169 [2023-08-00; online 2023-07-13]

Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]

Year 2021

PubMed DOI Crossref

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.

Boehm U, Nelson G, Brown CM, ..., Swedlow JR, Nitschke R

Nat. Methods 18 (12) 1423-1426 [2021-12-00; online 2021-05-23]

Integrated Microscopy Technologies Gothenburg [Collaborative]

PubMed DOI Crossref

Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging.

Hickey JW, Neumann EK, Radtke AJ, ..., Kelleher NL, Saka SK

Nat. Methods - (-) - [2021-11-22; online 2021-11-22]

Spatial Proteomics [Collaborative]

PubMed DOI Crossref

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.

Kawahara R, Chernykh A, Alagesan K, ..., Packer NH, Thaysen-Andersen M

Nat. Methods 18 (11) 1304-1316 [2021-11-00; online 2021-11-01]

Glycoproteomics and MS Proteomics [Technology development]

Year 2020

PubMed DOI Crossref

Probabilistic cell typing enables fine mapping of closely related cell types in situ.

Qian X, Harris KD, Hauling T, ..., Hjerling-Leffler J, Nilsson M

Nat. Methods 17 (1) 101-106 [2020-01-00; online 2019-11-18]

Bioinformatics Support for Computational Resources [Service] In Situ Sequencing (ISS) [Service]

Year 2019

PubMed DOI Crossref

High-definition spatial transcriptomics for in situ tissue profiling.

Vickovic S, Eraslan G, Salmén F, ..., Regev A, Ståhl PL

Nat. Methods 16 (10) 987-990 [2019-10-00; online 2019-09-09]

Bioinformatics Support for Computational Resources [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Comprehensive mapping of neurotransmitter networks by MALDI-MS imaging.

Shariatgorji M, Nilsson A, Fridjonsdottir E, ..., Odell LR, Andrén PE

Nat. Methods 16 (10) 1021-1028 [2019-10-00; online 2019-09-23]

Spatial Mass Spectrometry [Technology development]

Year 2016

PubMed DOI Crossref

A proposal for validation of antibodies.

Uhlen M, Bandrowski A, Carr S, ..., Snyder M, Yamamoto T

Nat. Methods 13 (10) 823-827 [2016-10-00; online 2016-09-05]

Spatial Proteomics [Collaborative]

PubMed DOI Crossref

A saposin-lipoprotein nanoparticle system for membrane proteins.

Frauenfeld J, Löving R, Armache JP, ..., Cheng Y, Nordlund P

Nat. Methods 13 (4) 345-351 [2016-04-00; online 2016-03-07]

Protein Science Facility (PSF) [Service]

Year 2014

PubMed DOI Crossref

Binning metagenomic contigs by coverage and composition.

Alneberg J, Bjarnason BS, de Bruijn I, ..., Andersson AF, Quince C

Nat. Methods 11 (11) 1144-1146 [2014-11-00; online 2014-09-15]

Bioinformatics (NBIS) Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training

PubMed DOI Crossref

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.

Branca RM, Orre LM, Johansson HJ, ..., Käll L, Lehtiö J

Nat. Methods 11 (1) 59-62 [2014-01-00; online 2013-11-17]

Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Year 2013

PubMed DOI Crossref

Enzymatic production of 'monoclonal stoichiometric' single-stranded DNA oligonucleotides.

Ducani C, Kaul C, Moche M, Shih WM, Högberg B

Nat. Methods 10 (7) 647-652 [2013-07-00; online 2013-06-04]

Protein Science Facility (PSF)

PubMed DOI Crossref

Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells.

Stadler C, Rexhepaj E, Singan VR, ..., Simpson JC, Lundberg E

Nat. Methods 10 (4) 315-323 [2013-04-00; online 2013-02-26]

Spatial Proteomics

PubMed DOI Crossref

A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.

Bienko M, Crosetto N, Teytelman L, ..., Itzkovitz S, van Oudenaarden A

Nat. Methods 10 (2) 122-124 [2013-02-00; online 2012-12-23]

Advanced FISH Technologies [Technology development]

Year 2011

PubMed DOI Crossref

Counting absolute numbers of molecules using unique molecular identifiers.

Kivioja T, Vähärautio A, Karlsson K, ..., Linnarsson S, Taipale J

Nat. Methods 9 (1) 72-74 [2011-11-20; online 2011-11-20]

Karolinska High Throughput Center (KHTC)

PubMed DOI Crossref

Increasing the dynamic range of in situ PLA.

Clausson C, Allalou A, Weibrecht I, ..., Wählby C, Söderberg O

Nat. Methods 8 (11) 892-893 [2011-10-28; online 2011-10-28]

Affinity Proteomics Uppsala [Collaborative] BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative] PLA and Single Cell Proteomics

PubMed DOI Crossref

A roadmap to generate renewable protein binders to the human proteome.

Colwill K, Renewable Protein Binder Working Group , Gräslund S

Nat. Methods 8 (7) 551-558 [2011-05-15; online 2011-05-15]

Affinity Proteomics Stockholm [Technology development] Autoimmunity and Serology Profiling [Technology development]