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Nat. Methods
JSON
ISSN
1548-7105
ISSN-L
1548-7091
IUID
d46cdab5637e460cb1705a9cc0e6b3a4
Modified
2020-11-27T13:14:05.165Z
Created
2017-05-09T09:12:40.673Z
Year 2024
PubMed
DOI
Crossref
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.
Wernersson E, Gelali E,
Girelli G
, ...,
Crosetto N
,
Bienko M
Nat. Methods
-
(-) - [2024-06-06; online 2024-06-06]
Integrated Microscopy Technologies Stockholm [Collaborative]
Spatial Proteomics [Service]
Year 2023
PubMed
DOI
Crossref
Community-developed checklists for publishing images and image analyses.
Schmied C
,
Nelson MS
,
Avilov S
, ...,
Tischer C
,
Jambor HK
Nat. Methods
-
(-) - [2023-09-14; online 2023-09-14]
Integrated Microscopy Technologies Gothenburg [Collaborative]
PubMed
DOI
Crossref
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
Vromman M
,
Anckaert J
, Bortoluzzi S, ...,
Vandesompele J
,
Volders PJ
Nat. Methods
20
(8) 1159-1169 [2023-08-00; online 2023-07-13]
Bioinformatics Long-term Support WABI [Service]
Bioinformatics Support, Infrastructure and Training [Service]
Year 2021
PubMed
DOI
Crossref
QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.
Boehm U
,
Nelson G
,
Brown CM
, ..., Swedlow JR,
Nitschke R
Nat. Methods
18
(12) 1423-1426 [2021-12-00; online 2021-05-23]
Integrated Microscopy Technologies Gothenburg [Collaborative]
PubMed
DOI
Crossref
Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging.
Hickey JW,
Neumann EK
,
Radtke AJ
, ...,
Kelleher NL
,
Saka SK
Nat. Methods
-
(-) - [2021-11-22; online 2021-11-22]
Spatial Proteomics [Collaborative]
PubMed
DOI
Crossref
Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.
Kawahara R
,
Chernykh A
, Alagesan K, ...,
Packer NH
,
Thaysen-Andersen M
Nat. Methods
18
(11) 1304-1316 [2021-11-00; online 2021-11-01]
Glycoproteomics and MS Proteomics [Technology development]
Year 2020
PubMed
DOI
Crossref
Probabilistic cell typing enables fine mapping of closely related cell types in situ.
Qian X
,
Harris KD
, Hauling T, ...,
Hjerling-Leffler J
,
Nilsson M
Nat. Methods
17
(1) 101-106 [2020-01-00; online 2019-11-18]
Bioinformatics Support for Computational Resources [Service]
In Situ Sequencing (ISS) [Service]
Year 2019
PubMed
DOI
Crossref
High-definition spatial transcriptomics for in situ tissue profiling.
Vickovic S
,
Eraslan G
,
Salmén F
, ..., Regev A,
Ståhl PL
Nat. Methods
16
(10) 987-990 [2019-10-00; online 2019-09-09]
Bioinformatics Support for Computational Resources [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
PubMed
DOI
Crossref
Comprehensive mapping of neurotransmitter networks by MALDI-MS imaging.
Shariatgorji M, Nilsson A,
Fridjonsdottir E
, ...,
Odell LR
,
Andrén PE
Nat. Methods
16
(10) 1021-1028 [2019-10-00; online 2019-09-23]
Spatial Mass Spectrometry [Technology development]
Year 2016
PubMed
DOI
Crossref
A proposal for validation of antibodies.
Uhlen M
, Bandrowski A, Carr S, ..., Snyder M, Yamamoto T
Nat. Methods
13
(10) 823-827 [2016-10-00; online 2016-09-05]
Spatial Proteomics [Collaborative]
PubMed
DOI
Crossref
A saposin-lipoprotein nanoparticle system for membrane proteins.
Frauenfeld J, Löving R, Armache JP, ..., Cheng Y, Nordlund P
Nat. Methods
13
(4) 345-351 [2016-04-00; online 2016-03-07]
Protein Science Facility (PSF) [Service]
Year 2014
PubMed
DOI
Crossref
Binning metagenomic contigs by coverage and composition.
Alneberg J, Bjarnason BS, de Bruijn I, ..., Andersson AF, Quince C
Nat. Methods
11
(11) 1144-1146 [2014-11-00; online 2014-09-15]
Bioinformatics Support and Infrastructure
Bioinformatics Support, Infrastructure and Training
PubMed
DOI
Crossref
HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.
Branca RM
,
Orre LM
,
Johansson HJ
, ...,
Käll L
,
Lehtiö J
Nat. Methods
11
(1) 59-62 [2014-01-00; online 2013-11-17]
Bioinformatics Support and Infrastructure [Service]
Bioinformatics Support, Infrastructure and Training [Service]
NGI Stockholm (Genomics Applications) [Service]
NGI Stockholm (Genomics Production) [Service]
National Genomics Infrastructure [Service]
Year 2013
PubMed
DOI
Crossref
Enzymatic production of 'monoclonal stoichiometric' single-stranded DNA oligonucleotides.
Ducani C, Kaul C, Moche M, Shih WM, Högberg B
Nat. Methods
10
(7) 647-652 [2013-07-00; online 2013-06-04]
Protein Science Facility (PSF)
PubMed
DOI
Crossref
Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells.
Stadler C
, Rexhepaj E, Singan VR, ..., Simpson JC,
Lundberg E
Nat. Methods
10
(4) 315-323 [2013-04-00; online 2013-02-26]
Spatial Proteomics
PubMed
DOI
Crossref
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.
Bienko M, Crosetto N, Teytelman L, ..., Itzkovitz S, van Oudenaarden A
Nat. Methods
10
(2) 122-124 [2013-02-00; online 2012-12-23]
Advanced FISH Technologies [Technology development]
Year 2011
PubMed
DOI
Crossref
Counting absolute numbers of molecules using unique molecular identifiers.
Kivioja T, Vähärautio A, Karlsson K, ..., Linnarsson S, Taipale J
Nat. Methods
9
(1) 72-74 [2011-11-20; online 2011-11-20]
Karolinska High Throughput Center (KHTC)
PubMed
DOI
Crossref
Increasing the dynamic range of in situ PLA.
Clausson C, Allalou A, Weibrecht I, ...,
Wählby C
, Söderberg O
Nat. Methods
8
(11) 892-893 [2011-10-28; online 2011-10-28]
Affinity Proteomics Uppsala [Collaborative]
BioImage Informatics [Collaborative]
PLA and Single Cell Proteomics
PubMed
DOI
Crossref
A roadmap to generate renewable protein binders to the human proteome.
Colwill K, Renewable Protein Binder Working Group , Gräslund S
Nat. Methods
8
(7) 551-558 [2011-05-15; online 2011-05-15]
Affinity Proteomics Stockholm [Technology development]
Autoimmunity and Serology Profiling [Technology development]
SciLifeLab Data Centre
Publications
9.5.0