Avenel C

Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data.

Andersson A, Behanova A, Avenel C, ..., Malmberg F, Wählby C

Cytometry A 105 (9) 677-687 [2024-09-00; online 2024-07-03]

BioImage Informatics [Collaborative]

Single cell-resolutionin situsequencing elucidates spatial dynamics of multiple sclerosis lesion and disease evolution

Langseth CM, Kukanja P, Rubio Rodríguez-Kirby LA, ..., Nilsson M, Castelo-Branco G

- - (-) - [2023-06-30; online 2023-06-30]

Bioinformatics Support for Computational Resources [Service] In Situ Sequencing (ISS) [Service]

Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin.

Li X, Andrusivova Z, Czarnewski P, ..., Lundeberg J, Sundström E

Nat. Neurosci. 26 (5) 891-901 [2023-05-00; online 2023-04-24]

BioImage Informatics [Collaborative] Bioinformatics Support for Computational Resources [Service] In Situ Sequencing (ISS) [Collaborative] NGI Short read [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows

Salas SM, Czarnewski P, Kuemmerle LB, ..., Ishaque N, Nilsson M

- - (-) - [2023-02-14; online 2023-02-14]

In Situ Sequencing (ISS) [Technology development]

Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3

Behanova A, Avenel C, Andersson A, ..., Östman A, Wählby C

Biol. Imaging 3 (-) - [2023-00-00; online 2023-02-20]

BioImage Informatics [Technology development]

Automated detection of vascular remodeling in tumor-draining lymph nodes by the deep-learning tool HEV-finder.

Bekkhus T, Avenel C, Hanna S, ..., Wählby C, Ulvmar MH

J. Pathol. 258 (1) 4-11 [2022-09-00; online 2022-07-12]

BioImage Informatics [Technology development]

Developmental origins of cell heterogeneity in the human lung

Sountoulidis A, Salas SM, Braun E, ..., Nilsson M, Samakovlis C

- - (-) - [2022-01-12; online 2022-01-12]

In Situ Sequencing (ISS) [Service]

Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer.

Chelebian E, Avenel C, Kartasalo K, ..., Lundeberg J, Wählby C

Cancers (Basel) 13 (19) - [2021-09-28; online 2021-09-28]

BioImage Informatics [Collaborative]