Publications 2025

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274 publications

DOI Crossref
Spatial mapping of DNA synthesis reveals dynamics and geometry of human replication nanostructures
Hawgood M, Urién B, Agostinho A, ..., Blom H, Lemmens B
EMBO J. - (-) - [2025-10-07; online 2025-10-07]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Chromosome-level assembly of the club-legged grasshopper (Gomphocerus sibiricus) genome.
Palacios-Gimenez OM, Varma M, Cheng X, ..., Suh A, Schielzeth H
G3 (Bethesda) - (-) - [2025-10-01; online 2025-10-01]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sleep health associations with serum metabolites in healthy adults.
Sørensen C, Dudka I, Virel A, ..., Kalpouzos G, Sindi S
Brain Behav Immun Health 48 (-) 101050 [2025-10-00; online 2025-07-04]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Morphology and molecular mobility of plasticized lignins studied with polarization transfer solid-state NMR and SAXS
Henrik-Klemens Å, Sparrman T, Björn L, Matic A, Larsson A
Polymer Testing 151 (-) 108942 [2025-10-00; online 2025-10-00]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Frequent longitudinal blood microsampling and proteome monitoring identify disease markers and enable timely intervention in a mouse model of type 1 diabetes.
Parajuli A, Bendes A, Byvald F, ..., Schwenk JM, Flodström-Tullberg M
Diabetologia 68 (10) 2277-2289 [2025-10-00; online 2025-08-04]
Affinity Proteomics Stockholm [Service]
DOI Crossref
Effects of rainfall exclusion on soil fungi in a boreal forest landscape
Koelemeijer IA, Castaño C, Clemmensen KE, ..., Jönsson M, Hylander K
Fungal Ecology 77 (-) 101452 [2025-10-00; online 2025-10-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Apoptotic bodies in phytoplankton suggest evolutionary conservation of cell death mechanisms.
Corredor L, Vergou GA, Skalický V, ..., Gorzsás A, Funk C
Nat Commun 16 (1) 8427 [2025-09-25; online 2025-09-25]
Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Low-Dose Aspirin for PI3K-Altered Localized Colorectal Cancer.
Martling A, Hed Myrberg I, Nilbert M, ..., Lindberg J, ALASCCA Study Group
N. Engl. J. Med. 393 (11) 1051-1064 [2025-09-18; online 2025-09-17]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Temporal control of human DNA replication licensing by CDK4/6-RB signalling and chemical genetics.
Sosenko Piscitello A, Nilsson AS, Hawgood M, ..., Halazonetis TD, Lemmens B
Nat Commun 16 (1) 8268 [2025-09-12; online 2025-09-12]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Personality and repeated social defeat affect health condition and gene expression in the skin and intestines in zebrafish.
Benrejdal L, Hubená P, Brodin D, ..., Winberg S, Bergman P
Prog. Neuropsychopharmacol. Biol. Psychiatry - (-) 111487 [2025-09-09; online 2025-09-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Immunogenicity and innate immunity to high-dose and repeated vaccination of modified mRNA versus unmodified mRNA.
Engstrand O, Joas G, Miranda MC, ..., Reinhardt A, Loré K
Mol Ther Nucleic Acids 36 (3) 102588 [2025-09-09; online 2025-06-09]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Genetic Adaptation to Brackish Water and Spawning Season in European Cisco.
Deng Q, Goodall J, Bergenius Nord M, ..., Pettersson OV, Andersson L
Mol. Ecol. - (-) e70094 [2025-09-03; online 2025-09-03]
NGI Long read [Collaborative] NGI Other NGI Stockholm (Genomics Applications) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Effects of Oligolysine-Polyethylene Glycol Coating on the Biodistribution of Wireframe DNA Origami Nanosheets in Zebrafish Embryos.
Kolonelou C, Engström E, Bräutigam L, ..., Andersson O, Teixeira AI
ACS Nano - (-) - [2025-09-03; online 2025-09-03]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Ancient host-associated microbes obtained from mammoth remains.
Guinet B, Oskolkov N, Moreland K, ..., Dalén L, van der Valk T
Cell - (-) - [2025-09-02; online 2025-09-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Plasma membrane labelling efficiency, internalization and partitioning of functionalized fluorescent lipids as a function of lipid structure.
Sezgin E
RSC Chem Biol - (-) - [2025-09-01; online 2025-09-01]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Immune-coagulation dynamics in severe COVID-19 revealed by autoantibody profiling and multi-omics integration.
Ambikan AT, Cederholm A, Rezene S, ..., Landegren N, Gupta S
Sci Rep 15 (1) 32149 [2025-09-01; online 2025-09-01]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Host Traits Impact the Outcome of Metagenomic Library Preparation From Dental Calculus Samples Across Diverse Mammals.
Moraitou M, Richards JL, Bolyos C, ..., Portela Miguez R, Guschanski K
Mol Ecol Resour - (-) e70039 [2025-09-01; online 2025-09-01]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sex Dependent and Sjögren Disease Like Immune Responses Against Phosphoantigens in Balb/C Mice.
Czwakiel P, Brindefalk B, Eghbali A, ..., Troye-Blomberg M, Faye I
Scand. J. Immunol. 102 (3) e70052 [2025-09-00; online 2025-09-03]
Autoimmunity and Serology Profiling [Service]
DOI Crossref
Resistance and resilience of co-occurring nitrifying microbial guilds to drying-rewetting stress in soil
Müller LJ, Alicke M, Romdhane S, ..., Saghaï A, Hallin S
Soil Biology and Biochemistry 208 (-) 109846 [2025-09-00; online 2025-09-00]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Lineage-specific targets of positive selection in three leaf beetles correspond with defence capacity against their shared parasitoid wasp.
Yang X, Tunström K, Slotte T, Wheat CW, Hambäck PA
Heredity (Edinb) 134 (9) 567-575 [2025-09-00; online 2025-09-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution.
Zervakis PI, Postel Z, Losvik A, ..., Churcher A, Slotte T
New Phytol. 247 (6) 2964-2981 [2025-09-00; online 2025-07-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic determinants of therapy response in ETV6::RUNX1 leukemia.
Oksa L, Moisio S, Maqbool K, ..., Lohi O, Heinäniemi M
Leukemia 39 (9) 2125-2139 [2025-09-00; online 2025-07-09]
NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Fungal guild interactions slow decomposition of boreal forest pine litter and humus.
Mielke LA, Klein J, Ekblad A, ..., Lindahl BD, Clemmensen KE
New Phytol. 247 (5) 2367-2380 [2025-09-00; online 2025-06-24]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Disease-specific U1 spliceosomal RNA mutations in mature B-cell neoplasms.
Nadeu F, Shuai S, Clot G, ..., Puente XS, Campo E
Leukemia 39 (9) 2076-2086 [2025-09-00; online 2025-06-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Classification of Paediatric Celiac Disease Using RNA Sequencing and Real-Time PCR of Duodenal Biomarkers.
Bragde HG, Almer S, Söderman J
J. Cell. Mol. Med. 29 (18) e70854 [2025-09-00; online 2025-09-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Whole genome transcriptional analysis of intestinal biopsies and blood cells indicate genes involved in antioxidant defense systems, amino acid metabolism and antigen presentation in the pathogenesis of celiac disease.
Torinsson Naluai Å, Sabbag S, Abrahamsson S, ..., Arnell H, Agardh D
BMC Med 23 (1) 507 [2025-08-29; online 2025-08-29]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Structure of the complete 14-subunit botulinum neurotoxin B complex reveals a unique anchoring through the narrow central pore of HA70.
Krč A, Košenina SP, Nowakowska MB, Masuyer G, Stenmark P
Sci Adv 11 (35) eadx5058 [2025-08-29; online 2025-08-27]
Cryo-EM [Service]
PubMed DOI Crossref
SMAD3 and p300 complex scaffolding by long non-coding RNA LIMD1-AS1 promotes TGF-β-induced breast cancer cell plasticity.
Fan C, Cats D, Selle M, ..., Ten Dijke P, Wang Q
Nucleic Acids Res. 53 (16) - [2025-08-27; online 2025-09-01]
CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome.
Zgadzay Y, Mirabello C, Wanes G, ..., Gahura O, Amunts A
Structure - (-) - [2025-08-27; online 2025-08-27]
Bioinformatics (NBIS) [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]
PubMed DOI Crossref
Combinatorial DNMTs and EZH2 inhibition reprograms the H3K27me3 and DNAme-mediated onco-epigenome to suppress multiple myeloma proliferation.
Atienza Párraga A, Nylund P, Diamanti K, ..., Jernberg Wiklund H, Kalushkova A
Sci Rep 15 (1) 31568 [2025-08-27; online 2025-08-27]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Whole Genome Sequencing Reveals How Plasticity and Genetic Differentiation Underlie Sympatric Morphs of Arctic Charr.
Kurta K, Fedi MO, Baker K, ..., Jónsson ZO, Andersson L
Mol. Ecol. - (-) e70085 [2025-08-26; online 2025-08-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
MALNC: a new mutant NPM1/IDH2R140 and PML-RARA-associated lncRNA with impact on AML cell proliferation, maturation and drug response.
Cozzi E, Neddermeyer A, Zhong X, ..., Lennartsson A, Lehmann S
Cancer Gene Ther - (-) - [2025-08-23; online 2025-08-23]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Lipid-facilitated opening of the ADAM10 sheddase revealed by enhanced sampling simulations
Schahl A, Haloi N, Carroni M, ..., Delemotte L, Howard RJ
- - (-) - [2025-08-22; online 2025-08-22]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Induced somatic mutation accumulation during skeletal muscle regeneration reduces muscle strength.
Vrtačnik P, Merino LG, Subhash S, ..., Revêchon G, Eriksson M
Nat Aging - (-) - [2025-08-20; online 2025-08-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
RNA-seq analysis identifies key genes enhancing hoof strength to withstand barefoot racing in Standardbred trotters.
Schwochow D, Alameddine A, Spörndly-Nees E, ..., Niazi A, Lindgren G
BMC Genomics 26 (1) 751 [2025-08-18; online 2025-08-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Glucuronoyl Esterase Expressed in Aspen Xylem Affects γ-Ester Linkages Between Lignin and Glucuronoxylan Reducing Recalcitrance and Accelerating Growth.
Derba-Maceluch M, García Romañach L, Hedenström M, ..., Vilaplana F, Mellerowicz EJ
Plant Biotechnol. J. - (-) - [2025-08-17; online 2025-08-17]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Image based subcellular mapping of the protein landscape of SARS-CoV-2 infected cells for target-centric drug repurposing.
Tampere M, H Le T, Asp E, ..., Östling P, Stadler C
Biomed Pharmacother 191 (-) 118447 [2025-08-16; online 2025-08-16]
Chemical Biology Consortium Sweden (CBCS) [Collaborative] Spatial Proteomics [Collaborative]
PubMed DOI Crossref
Setting up mother-infant pair lactation studies with biobanking for research according to regulatory requirements.
Hansson M, Björkgren I, Svedenkrans J, ..., Baranczewski P, Shaughnessy L
Br J Clin Pharmacol - (-) - [2025-08-15; online 2025-08-15]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Early germline sequestration in a basidiomycete fungus.
Thorén MH, Olsson B, Vonk PJ, ..., Ryberg M, Johannesson H
Science 389 (6761) 720-723 [2025-08-14; online 2025-08-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Unraveling Nitrogen Uptake and Metabolism: Gene Families, Expression Dynamics, and Functional Insights in Aspen (Populus tremula).
Zhang Y, Choudhary S, Renström A, ..., Robinson KM, Tuominen H
Tree Physiol - (-) - [2025-08-11; online 2025-08-11]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Lrig3-deficient mice exhibit strain-specific alterations in liver fat accumulation, intestinal morphology, and middle ear inflammation.
Herdenberg C, Henriksson R, Hedman H, Rondahl V
Gene 960 (-) 149539 [2025-08-10; online 2025-05-02]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Spatial transcriptomics exploration of the primary neuroblastoma microenvironment in archived FFPE samples unveils novel paracrine interactions.
Siaw JT, Merseburger P, Borenäs M, ..., Palmer RH, Van den Eynden J
J. Pathol. - (-) - [2025-08-08; online 2025-08-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ribosome biogenesis in plants requires the nuclear envelope and mitochondria localized OPENER complex.
Wang W, Mahboubi A, Zhu S, ..., Mateus A, Niittylä T
Nat Commun 16 (1) 7301 [2025-08-07; online 2025-08-07]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Precise mapping of single-stranded DNA breaks by sequence-templated erroneous DNA polymerase end-labelling.
Wenson L, Heldin J, Martin M, ..., Spjuth O, Söderberg O
Nat Commun 16 (1) 7130 [2025-08-04; online 2025-08-04]
Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic and secretomic analyses of Blastobotrys yeasts reveal key xylanases for biomass decomposition.
Ravn J, Ristinmaa AS, Mazurkewich S, ..., Larsbrink J, Geijer C
Appl. Microbiol. Biotechnol. 109 (1) 175 [2025-08-01; online 2025-08-01]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Small‐scale thermal habitat variability may not determine seagrass resilience to climate change
Hattich GSI, Jahnke M, Enge S, ..., Havenhand JN, Pansch C
Limnol Oceanogr 70 (8) 2039-2052 [2025-08-00; online 2025-06-06]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identification.
Brunet S, Grankvist A, Jaen-Luchoro D, ..., Mölling P, Hallbäck ET
Eur. J. Clin. Microbiol. Infect. Dis. 44 (8) 1907-1916 [2025-08-00; online 2025-05-10]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Mast Cell Phenotypic Heterogeneity Impacts the Interplay with Pathogenic Salmonella Typhimurium Bacteria.
von Beek C, Prensa GI, Andersson JHM, Pejler G, Sellin ME
Eur. J. Immunol. 55 (8) e70040 [2025-08-00; online 2025-08-21]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Landscape connectivity and genetic structure of animal populations in urban ponds
Yildirim Y, Hyseni C, Heino J, ..., Höglund J, Johansson F
Conserv Genet 26 (4) 703-714 [2025-08-00; online 2025-04-08]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genome-wide identification of modulators of Chlamydia trachomatis parasitophorous vacuole stability highlights an important role for sphingolipid supply.
Babu Sait MR, Jachmann LH, Türköz G, ..., Schmierer B, Sixt BS
PLoS Biol. 23 (8) e3003297 [2025-08-00; online 2025-08-12]
CRISPR Functional Genomics [Service] Chemical Biology Consortium Sweden (CBCS) [Service] Integrated Microscopy Technologies Umeå [Technology development] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetics of monozygotic twins reveals the impact of environmental sensitivity on psychiatric and neurodevelopmental phenotypes.
Assary E, Coleman JRI, Hemani G, ..., Munroe PB, Keers R
Nat Hum Behav 9 (8) 1683-1696 [2025-08-00; online 2025-06-10]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Genetic diversity and structure among Acropora austera populations in Mozambique suggest low resilience potential of one of the world’s most charismatic coral reefs
Duvane JA, Dupont S, Sola E, Ortega-Martinez O, Pereyra RT
Coral Reefs 44 (4) 1185-1195 [2025-08-00; online 2025-05-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Effects of boreal ground layer shrubs and bryophytes on the diversity, biomass and composition of lichen communities across contrasting ecosystems
Fanin N, Asplund J, Gundale MJ, ..., Nilsson M, Wardle DA
Oikos 2025 (8) - [2025-08-00; online 2025-04-04]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Ectomycorrhizal decomposers and their niche(s) in boreal forests
Packard EE, Pérez‐Izquierdo L, Clemmensen KE, ..., Stendahl J, Lindahl BD
Functional Ecology 39 (8) 1998-2014 [2025-08-00; online 2025-06-12]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Diplodia tip blight (Diplodia sapinea) and site conditions shape Scots pine (Pinus sylvestris) endophytic mycobiome
Brodde L, Miñana-Posada S, Tudoran A, ..., Oliva J, Stenlid J
Forest Ecology and Management 589 (-) 122781 [2025-08-00; online 2025-08-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Complex relationship between soil fungi and conservation value assessments in boreal forests.
Kyaschenko J, Mielke L, Jönsson M, ..., Clemmensen KE, Strengbom J
Conservation Biology 39 (4) e70012 [2025-08-00; online 2025-03-12]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Assessing Sperm Quality Parameters in Mass‐Spawning Norwegian Arctic Charr
Kurta K, Beirão J, Thomason B, Palaiokostas C
Aquaculture Fish & Fisheries 5 (4) - [2025-08-00; online 2025-08-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
An east–west distribution of genetic diversity in Nordic populations of caraway (Carum carvi L.) and its consequences for conservation prioritisation
de Haro Reyes B, Palmé A, Fitzgerald H, ..., Treier UA, Hagenblad J
Conserv Genet 26 (4) 771-785 [2025-08-00; online 2025-05-06]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Profiling of the microRNA transcriptome in feline whole blood.
Ohlsson Å, Hanås S, Holst BS, ..., Ljungvall I, Häggström J
Sci Rep 15 (1) 27962 [2025-07-31; online 2025-07-31]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Topical MTH1 Inhibition Suppresses SKP2-WNT5a-Driven Psoriatic Hyperproliferation
Bivik Eding C, Köhler I, Moparthi L, ..., Warpman Berglund U, Enerbäck C
Int J Mol Sci 26 (15) 7174 [2025-07-25; online 2025-07-25]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Predicting immune responsiveness in ER-positive breast cancer for personalized therapy: a population-based study.
Stenmark Tullberg A, Woxlin S, Sjölin F, ..., Holmberg E, Karlsson P
NPJ Precis Oncol 9 (1) 250 [2025-07-23; online 2025-07-23]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of a small molecule targeting EPLIN as a novel strategy for the treatment of pediatric neuroblastoma and medulloblastoma.
Lindell E, Guo J, Zhao M, ..., Sjöblom T, Zhang X
Cell Death Dis 16 (1) 554 [2025-07-23; online 2025-07-23]
NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Wide-scale geographical analysis of genetic ancestry in the South African Coloured population.
Lankheet I, Hammarén R, Alva Caballero LX, ..., de Jongh M, Schlebusch C
BMC Biol. 23 (1) 219 [2025-07-22; online 2025-07-22]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Sustainable production of exopolysaccharides from quinoa stalk hydrolysates using halotolerant Bacillus swezeyi: fermentation kinetics and product characterization
Miranda DA, Carrasco C, Romero‐Soto L, ..., Jönsson LJ, Martín C
Biofuels Bioprod Bioref - (-) - [2025-07-21; online 2025-07-21]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
The invasion phenotypes of glioblastoma depend on plastic and reprogrammable cell states.
Doroszko M, Stockgard R, Uppman I, ..., Larsson I, Nelander S
Nat Commun 16 (1) 6662 [2025-07-19; online 2025-07-19]
NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Interplay between antipredator behavior, parasitism, and gut microbiome in wild stickleback populations.
Varg JE, Brealey JC, Benhaïm D, Losada-Germain R, Boughman JW
NPJ Biofilms Microbiomes 11 (1) 138 [2025-07-19; online 2025-07-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Small RNA in sperm-Paternal contributions to human embryo development.
Isacson S, Karlsson K, Zalavary S, ..., Liffner S, Öst A
Nat Commun 16 (1) 6571 [2025-07-17; online 2025-07-17]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
DOI Crossref
Dual targeting of G9a and DNMTs induces anti-tumour effects in multiple myeloma
Nylund PW, Garrido-Zabala B, Tziola SI, ..., Kalushkova A, Jernberg-Wiklund H
Blood Adv - (-) - [2025-07-17; online 2025-07-17]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Plasma carotenoids are inversely correlated with granulocyte counts and soluble inflammatory markers in a middle-aged population: a cross-sectional study with mediation analysis.
Neelissen J, Leanderson P, Nyström FH, Jonasson L, Chung RWS
BMC Med 23 (1) 427 [2025-07-15; online 2025-07-15]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
In-depth patient-specific analysis of tumor heterogeneity in melanoma brain metastasis: Insights from spatial transcriptomics and multi-region bulk sequencing.
Sharma N, Rájová J, Mermelekas G, ..., Pernemalm M, Eriksson H
Transl Oncol 59 (-) 102468 [2025-07-15; online 2025-07-15]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genome analyses suggest recent speciation and postglacial isolation in the Norwegian lemming.
Lord E, Feinauer IS, Soares AER, ..., Dalén L, Díez-Del-Molino D
Proc. Natl. Acad. Sci. U.S.A. 122 (28) e2424333122 [2025-07-15; online 2025-06-30]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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DNA Methylation Reflects Cis-Genetic Differentiation Across the European Crow Hybrid Zone.
Merondun J, Wolf JBW
Mol. Ecol. - (-) e70026 [2025-07-10; online 2025-07-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Fungal diversity in wood of living trees is higher in oak than in beech, maple or linden, and is affected by tree size and climate
Nordén B, Andreasen M, Gran O, Menkis A
Biodivers Conserv - (-) - [2025-07-05; online 2025-07-05]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Bladder cancer subtypes exhibit limited plasticity across different microenvironments and in metastases.
Bernardo C, Chattopadhyay S, Andersson N, ..., Höglund M, Sjödahl G
Exp Hematol Oncol 14 (1) 91 [2025-07-02; online 2025-07-02]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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The interplay of genetics and fatty acid metabolism: exploring their impact on metabolic syndrome in Swedish men.
Oskarsdottir H, Palsson A, Olafsdottir EB, ..., Skuladottir GV, Mwinyi J
Nutr J 24 (1) 99 [2025-07-01; online 2025-07-01]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A high polygenic risk score is associated with SSA/SSB antibody positivity and early onset in primary Sjögren's disease.
Fugmann C, Reid S, Pucholt P, ..., Imgenberg-Kreuz J, Nordmark G
Rheumatology (Oxford) 64 (7) 4341-4346 [2025-07-01; online 2024-12-18]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
UYSD: a novel data repository accessible via public website for worldwide population frequencies of Y-SNP haplogroups.
Ralf A, Zandstra D, van Wersch B, ..., Schneider PM, Kayser M
Eur. J. Hum. Genet. 33 (7) 904-912 [2025-07-00; online 2025-05-08]
NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
The spatiotemporal distribution of human pathogens in ancient Eurasia.
Sikora M, Canteri E, Fernandez-Guerra A, ..., Iversen AKN, Willerslev E
Nature 643 (8073) 1011-1019 [2025-07-00; online 2025-07-09]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Museomics unravels cryptic diversity in an endemic group of New Guinean songbirds.
Blom MPK, Bloom-Quinn S, Marki PZ, ..., Irestedt M, Jønsson KA
Biol. Lett. 21 (7) 20240611 [2025-07-00; online 2025-07-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
Söderquist L, Joffard N, Scofield DG, ..., Karrenberg S, Sletvold N
Ecography 2025 (7) - [2025-07-00; online 2025-03-19]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Genetic markers associated with bone strength and density in Rhode Island Red laying hens.
Yue Q, Johnsson M, Wilson PW, ..., Dunn IC, de Koning DJ
Poult. Sci. 104 (7) 105246 [2025-07-00; online 2025-05-02]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic and Environmental Effects on Parent-Rated Adaptive Behaviour in Infancy.
Halkola H, Viktorsson C, Jones EJH, ..., Falck-Ytter T, Bussu G
Dev Sci 28 (4) e70041 [2025-07-00; online 2025-06-20]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Ex vivo drug responses and molecular profiles of 597 pediatric acute lymphoblastic leukemia patients.
Enblad AP, Krali O, Gezelius H, ..., Lönnerholm G, Nordlund J
Hemasphere 9 (7) e70176 [2025-07-00; online 2025-07-28]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Evaluating IL1RA-Autoantibodies Across SARS-CoV-2-Related Diseases.
Behere A, Hallberg P, Cederholm A, ..., Brodin P, Landegren N
Scand. J. Immunol. 102 (1) e70039 [2025-07-00; online 2025-06-25]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Chemical exposomics in biobanked plasma samples and associations with breast cancer risk factors
Edlund J, Sdougkou K, Papazian S, ..., Martin JW, Harlid S
J Expo Sci Environ Epidemiol 35 (4) 567-577 [2025-07-00; online 2024-12-06]
Exposomics [Collaborative]
DOI Crossref
Pretreatment with estrogen enhances the therapeutic efficacy of cardiac progenitor cells and improves cardiac recovery in a failing heart model
Aydos D, Basak N, Olgar Y, ..., Sezgin E, Bitirim CV
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Integrated Microscopy Technologies Stockholm [Service]
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The mitochondrial methylation potential gates mitoribosome assembly.
Glasgow RIC, Singh V, Peña-Pérez L, ..., Amunts A, Wredenberg A
Nat Commun 16 (1) 5388 [2025-06-25; online 2025-06-25]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
BMI during childhood and puberty - associations with blood pressure and hypertension.
Lilja L, Bygdell M, Martikainen J, ..., Ohlsson C, Kindblom JM
Eur J Prev Cardiol - (-) - [2025-06-25; online 2025-06-25]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Catalytic-dependent and independent functions of the histone acetyltransferase CBP promote pioneer-factor-mediated zygotic genome activation.
Marsh AJ, Pirogov S, Kaur Y, ..., Harrison MM, Mannervik M
Mol. Cell 85 (12) 2409-2424.e8 [2025-06-19; online 2025-05-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Fin Whale as a Sink of Legacy and Emerging Contaminants: First Integrated Chemical Exposomics and Gene Expression Analysis in Cetaceans
Fossi MC, Limonta G, Baini M, ..., Rosso M, Panti C
Environ. Sci. Technol. 59 (23) 11477-11492 [2025-06-17; online 2025-06-02]
Exposomics [Collaborative]
PubMed DOI Crossref
Beta-blockers prolong response to androgen deprivation therapy in prostate cancer through modulation of the neuro-immuno-oncology axis.
Thulin MH, Ramberg H, Nielsen HK, ..., Mælandsmo GM, Taskén KA
J Transl Med 23 (1) 672 [2025-06-17; online 2025-06-17]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
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Genomic Analysis of Trichotillomania.
Halvorsen MW, Garrett ME, Cuccaro ML, Ashley-Koch AE, Crowley JJ
Am. J. Med. Genet. B Neuropsychiatr. Genet. - (-) e33035 [2025-06-13; online 2025-06-13]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Early-Life Diet Diversity and the Subsequent Risk of Inflammatory Bowel Disease: Findings From Two Scandinavian Birth Cohorts.
Guo A, Ludvigsson J, Hård Af Segerstad EM, ..., Størdal K, Mårild K
Inflamm Bowel Dis 31 (6) 1493-1501 [2025-06-13; online 2024-09-14]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Deep plasma proteomics identifies and validates an eight-protein biomarker panel that separate benign from malignant tumors in ovarian cancer.
Moskov M, Hedlund Lindberg J, Lycke M, ..., Stålberg K, Enroth S
Commun Med (Lond) 5 (1) 230 [2025-06-12; online 2025-06-12]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Spatial organization, chromatin accessibility and gene-regulatory programs defining mouse sensory neurons.
Krauter D, Kupari J, Usoskin D, ..., Zhang MD, Ernfors P
Commun Biol 8 (1) 908 [2025-06-11; online 2025-06-11]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Revised Diffusion Law Permits Quantitative Nanoscale Characterization of Membrane Organization.
Svobodová B, Št'astný D, Blom H, ..., Hof M, Šachl R
Anal. Chem. 97 (22) 11478-11485 [2025-06-10; online 2025-05-29]
Integrated Microscopy Technologies Stockholm [Collaborative]
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Melamine-Based Molecularly Imprinted Monoliths Targeting Glyphosate in Aqueous Media: Synthesis and Binding Mechanism Elucidation.
Huynh CM, Luong NT, Nguyen T, ..., Boily JF, Irgum K
ACS Omega 10 (22) 22412-22425 [2025-06-10; online 2025-05-23]
Swedish NMR Centre (SNC) [Service]
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Genomic insights into antimicrobial resistance and virulence of E. coli in central Ethiopia: a one health approach.
Chekole WS, Potgieter L, Adamu H, ..., Tessema TS, Magnusson U
Front Microbiol 16 (-) 1597580 [2025-06-10; online 2025-06-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Metagenomic insights into the complex viral composition of the enteric RNA virome in healthy and diarrheic calves from Ethiopia.
Bergholm J, Tessema TS, Blomström AL, Berg M
Virol J 22 (1) 188 [2025-06-07; online 2025-06-07]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Exploring Fungal Communities in the Needles of Marginal Conifer Tree Populations
Lazarević J, Menkis A
Forests 16 (6) 968 [2025-06-07; online 2025-06-07]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Three-dimensional cell-cell interactions promote direct reprogramming of patient fibroblasts into functional and transplantable neurons.
Kajtez J, Laurin K, Nilsson F, ..., Habekost M, Parmar M
Sci Adv 11 (23) eadq7855 [2025-06-06; online 2025-06-06]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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The low endoribonuclease activity and lack of rNMP preference of human mitochondrial topoisomerase 1 protect against ribonucleotide-dependent deletions
Bader CPJ, Miyazaki-Kasho E, Forslund JME, ..., Wessels M, Wanrooij PH
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Chemical Biology Consortium Sweden (CBCS) [Service]
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Sex-biased Migration and Demographic History of the Big European Firefly Lampyris noctiluca.
Catalán A, Gygax D, Candolin U, ..., Duchen P, Höhna S
Mol. Biol. Evol. 42 (6) - [2025-06-04; online 2025-06-21]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Antimicrobial resistance and serotype distribution of Salmonella spp. isolated from fresh foods in Cambodia.
Huoy L, Nasirzadeh L, Phan K, ..., Bongcam-Rudloff E, Boqvist S
J Appl Microbiol 136 (6) - [2025-06-02; online 2025-06-03]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer.
Sur I, Zhao W, Zhang J, ..., de la Roche M, Taipale J
Life Sci. Alliance 8 (6) - [2025-06-00; online 2025-04-03]
NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Sequencing airborne DNA to monitor crop pathogens and pests
Mikko A, Villegas JA, Svensson D, ..., Berlin A, Stenberg P
iScience - (-) 112912 [2025-06-00; online 2025-06-00]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Precision Omics Initiative Sweden (PROMISE) will integrate research with healthcare.
Kämpe A, Gudmundsson S, Walsh CP, ..., Lindstrand A, Lappalainen T
Nat. Med. 31 (6) 1730-1732 [2025-06-00; online 2025-04-05]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Multimorbidity patterns and blood biomarkers of Alzheimer's disease in community-dwelling cognitively unimpaired older adults.
Marengoni A, Grande G, Valletta M, ..., Winblad B, Vetrano DL
Alzheimers Dement 21 (6) e70411 [2025-06-00; online 2025-06-23]
Affinity Proteomics Stockholm [Collaborative]
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Green Listed v2.0: A Web Application for Streamlined Design of Custom CRISPR Screens.
Henkel E, Li Z, Uvehag D, ..., Henkel M, Wermeling F
CRISPR J 8 (3) 216-223 [2025-06-00; online 2025-05-07]
CRISPR Functional Genomics [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Genetically Determined Inflammation-Related Proteins in Asthma and Type-2 Signatures.
Hernandez-Pacheco N, Björkander S, Merid SK, ..., Schwenk JM, Melén E
Allergy 80 (6) 1702-1714 [2025-06-00; online 2025-06-04]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Frequent Hybridisation Between Parapatric Lekking Bird-of-Paradise Species.
Thörn F, Müller IA, Soares AER, ..., Blom MPK, Irestedt M
Mol. Ecol. 34 (11) e17780 [2025-06-00; online 2025-04-29]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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EMD missense variant causes X-linked isolated dilated cardiomyopathy with myocardial emerin deficiency.
Bulmer L, Ljungman C, Hallin J, ..., Oldfors A, Gummesson A
Eur. J. Hum. Genet. 33 (6) 775-783 [2025-06-00; online 2025-03-10]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
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Diffuse large B cell lymphoma in rheumatoid arthritis patients is associated with elevated B-cell driving factors including CXCL13.
Euler N, Hellbacher E, Klint EA, ..., Grönwall C, AUTO-LYMPHOMA study group
Clin. Immunol. 275 (-) 110476 [2025-06-00; online 2025-03-19]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Diel Bacterioplankton Community Dynamics Under Contrasting Light Regimes.
Papadopoulou S, Linkhorst A, Balmonte JP, ..., Bertilsson S, Székely AJ
Environ Microbiol Rep 17 (3) e70099 [2025-06-00; online 2025-05-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Defining short linear motif binding determinants by phage display-based deep mutational scanning.
Benz C, Maassen L, Simonetti L, ..., Davey NE, Ivarsson Y
Protein Sci. 34 (6) e70174 [2025-06-00; online 2025-05-25]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Basal and exercise-induced expression of NLRP3 inflammasome-related components is increased in patients with chronic coronary syndrome.
Mahmood Z, Bäck M, Leanderson P, ..., Skoglund C, Jonasson L
Atherosclerosis 405 (-) 119227 [2025-06-00; online 2025-04-30]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Human LY9 governs CD4+ T cell IFN-γ immunity to Mycobacterium tuberculosis.
Ogishi M, Puchan J, Yang R, ..., Boisson-Dupuis S, Casanova JL
Sci Immunol 10 (107) eads7377 [2025-05-30; online 2025-05-30]
Autoimmunity and Serology Profiling [Service]
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Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response.
Fineschi S, Klar J, Lopez Egido JR, ..., Kaden R, Dahl N
Front Immunol 16 (-) 1589589 [2025-05-30; online 2025-05-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Rab7 inhibitor enhances stem cell differentiation into keratinocyte-like cells with anti-inflammatory properties.
Alghazali R, Tabebi M, Elmasry M, El-Serafi A
Front Immunol 16 (-) 1503007 [2025-05-26; online 2025-05-26]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
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Single-cell RNA-sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS.
Schweingruber C, Nijssen J, Mechtersheimer J, ..., Ruepp MD, Hedlund E
Nat Commun 16 (1) 4633 [2025-05-19; online 2025-05-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Selection for Tameness in Red Junglefowl Recapitulates Genetic Loci Associated With Domestication-Related Brain Composition.
Guerrero-Bosagna C, Pértille F, Moradinour Z, ..., Jensen P, Wright D
Mol. Ecol. - (-) e17788 [2025-05-19; online 2025-05-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Brain tumors induce immunoregulatory dendritic cells in draining lymph nodes that can be targeted by OX40 agonist treatment.
Badillo-Godinez O, Niemi J, Helfridsson L, ..., Nelander S, Hellström M
J Immunother Cancer 13 (5) - [2025-05-19; online 2025-05-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Cryptic infection of a giant virus in a unicellular green alga.
Erazo-Garcia MP, Sheyn U, Barth ZK, ..., Moniruzzaman M, Aylward FO
Science 388 (6748) eads6303 [2025-05-15; online 2025-05-15]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Revised phylogeny of mouflon based on expanded sampling of mitogenomes.
Mereu P, Pirastru M, Morell Miranda P, ..., Günther T, Leoni GG
PLoS ONE 20 (5) e0323354 [2025-05-14; online 2025-05-14]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Microbial transfer through fecal strings on eggs affects leaf beetle microbiome dynamics.
An Y, Garcia SL, Hambäck PA
mSystems - (-) e0172324 [2025-05-13; online 2025-05-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Maternal asthma and newborn DNA methylation.
Pedersen CT, Hoang TT, Jin J, ..., London SJ, Bønnelykke K
Clin Epigenetics 17 (1) 79 [2025-05-10; online 2025-05-10]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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CpG island methylator phenotype classification improves risk assessment in pediatric T-cell acute lymphoblastic leukemia.
Schäfer Hackenhaar F, Refhagen N, Hagleitner M, ..., Hultdin M, Degerman S
Blood 145 (19) 2161-2178 [2025-05-08; online 2025-01-22]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Gut microbiota mediates SREBP-1c-driven hepatic lipogenesis and steatosis in response to zero-fat high-sucrose diet.
Bergentall M, Tremaroli V, Sun C, ..., Nieuwdorp M, Bäckhed F
Mol Metab 97 (-) 102162 [2025-05-07; online 2025-05-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity.
Xu Y, Lou D, Chen P, ..., Hu Y, Wang J
Dev. Cell - (-) - [2025-05-06; online 2025-05-06]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Elucidation of short linear motif-based interactions of the MIT and rhodanese domains of the ubiquitin-specific protease 8.
Konstantinou A, Varga JK, Córdova-Pérez A, ..., Kulathu Y, Ivarsson Y
Biol. Direct 20 (1) 59 [2025-05-06; online 2025-05-06]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Integrative analyses of circulating microRNA expression profile in hexavalent chromium exposed workers - A cross-sectional study within the SafeChrom project.
Jiang Z, Pan M, Liu Y, ..., Broberg K, SafeChrom Project Team
J Hazard Mater 488 (-) 137367 [2025-05-05; online 2025-01-25]
NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
External validation of plasma CSF1 as a preoperative prognostic marker in patients with resectable intrahepatic cholangiocarcinoma.
Akiki A, Jacobsson H, Nouairia G, ..., Taflin H, Jansson H
Eur J Surg Oncol 51 (8) 110123 [2025-05-04; online 2025-05-04]
Affinity Proteomics Stockholm [Service]
DOI Crossref
Museum Ecologies
Fredengren C, Ewing A, Owman C, Holmstedt J
Mus. Soc. 23 (1) - [2025-05-01; online 2025-05-01]
Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Sperm DNA methylation landscape and its links to male fertility in a non-model teleost using EM-seq.
Pappas F, Johnsson M, Andersson G, Debes PV, Palaiokostas C
Heredity (Edinb) 134 (5) 293-305 [2025-05-00; online 2025-03-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Mutational signatures and kataegis in pediatric B-cell precursor acute lymphoblastic leukemia.
Gunnarsson R, Yang M, Biloglav A, ..., Paulsson K, Johansson B
Hemasphere 9 (5) e70136 [2025-05-00; online 2025-05-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Large Inversions Shape Diversification and Genome Evolution in Common Quails.
Ravagni S, Montero-Mendieta S, Leonard JA, ..., Sanchez-Donoso I, Vilà C
Mol. Ecol. 34 (9) e17740 [2025-05-00; online 2025-04-04]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Genome-wide association study of direct oral anticoagulants and their relation to bleeding.
Attelind S, Eriksson N, Wadelius M, Hallberg P
Eur J Clin Pharmacol 81 (5) 771-783 [2025-05-00; online 2025-03-21]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Fertilizer‐induced soil carbon rapidly disappears after clearcutting in boreal production forests
Boeraeve M, Granath G, Lindahl BD, Clemmensen KE, Strengbom J
Journal of Applied Ecology 62 (5) 1202-1215 [2025-05-00; online 2025-04-06]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Blood biomarkers of Alzheimer's disease and 12-year muscle strength trajectories in community-dwelling older adults: a cohort study.
Ornago AM, Pinardi E, Grande G, ..., Bellelli G, Vetrano DL
Lancet Healthy Longev 6 (5) 100715 [2025-05-00; online 2025-05-22]
Affinity Proteomics Stockholm [Collaborative]
DOI Crossref
High Content Imaging in Drug Discovery
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Chemical Biology Consortium Sweden (CBCS) [Technology development]
PubMed DOI Crossref
The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk.
Brandão LEM, Zhang L, Grip A, ..., Benedict C, Cedernaes J
Biomark Res 13 (1) 67 [2025-04-29; online 2025-04-29]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed
Antibody reactivity in cerebrospinal fluid and serum against the insulin-insulin-like growth factor 2 (INS-IGF2) protein is associated with psychotic symptomatology in patients with schizophrenia or related psychosis.
Melkersson K
Neuro Endocrinol. Lett. 46 (1) 1-14 [2025-04-28; online 2025-04-28]
Autoimmunity and Serology Profiling [Service]
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Affinity Proteomics Stockholm [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Swedish NMR Centre (SNC) [Service]
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Integrated Microscopy Technologies Umeå [Service]
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
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Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Yellow barley xan-m mutants are deficient in the motor unit SECA1 of the SEC1 translocase system.
Stuart D, Ivanova A, Zakhrabekova S, Hansson M
Planta 261 (4) 68 [2025-02-26; online 2025-02-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Lundgren S, Huuhtanen J, Keränen M, ..., Lähdesmäki H, Mustjoki S
Sci Transl Med 17 (787) eadl6758 [2025-02-26; online 2025-02-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Chemical Biology Consortium Sweden (CBCS) [Technology development]
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Digital sequencing is improved by using structured unique molecular identifiers.
Micallef P, Santamaría ML, Escobar M, ..., Vannas C, Ståhlberg A
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DNA methylation patterns contribute to changes of cellular differentiation pathways in leukocytes with LOY from patients with Alzheimer´s disease.
Jąkalski M, Bruhn-Olszewska B, Rychlicka-Buniowska E, ..., Ingelsson M, Dumanski JP
Cell. Mol. Life Sci. 82 (1) 93 [2025-02-25; online 2025-02-25]
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Comprehensive Gene Expression Analysis in Papillary Thyroid Carcinoma Reveals a Transcriptional Profile Associated with Reduced Radioiodine Avidity.
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Age-Dependent Pleomorphism in Mycobacterium monacense Cultures.
Ramesh M, Behra PRK, Pettersson BMF, Dasgupta S, Kirsebom LA
Microorganisms 13 (3) - [2025-02-20; online 2025-02-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Toward target 2035: EUbOPEN - a public-private partnership to enable & unlock biology in the open.
Tredup C, Ackloo S, Beck H, ..., Arrowsmith CH, Knapp S
RSC Med Chem 16 (2) 457-464 [2025-02-19; online 2024-11-29]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Temporal dynamics of airborne fungi in Swedish forest nurseries.
Larsson R, Menkis A, Olson Å
Appl. Environ. Microbiol. 91 (2) e0130624 [2025-02-19; online 2025-01-16]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Measuring plasma membrane fluidity using confocal microscopy.
Carravilla P, Andronico L, Schlegel J, ..., Lorent J, Sezgin E
Nat Protoc - (-) - [2025-02-19; online 2025-02-19]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
A chromosome-level genome assembly of the European green toad (Bufotes viridis).
Rödin-Mörch P, Bunikis I, Choi E, ..., Proux-Wéra E, Höglund J
G3 (Bethesda) - (-) - [2025-02-19; online 2025-02-19]
NGI Long read [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Circular RNA circASH1L(4,5) protects microRNA-129-5p from target-directed microRNA degradation in human skin wound healing.
Wang Q, Niu G, Liu Z, ..., Sommar P, Xu Landén N
Br J Dermatol 192 (3) 468-480 [2025-02-18; online 2024-10-18]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Microbial communities in slow sand filters for drinking water treatment adapt to organic matter altered by ozonation.
Rosenqvist T, Hilding J, Suarez C, Paul CJ
Water Res. 270 (-) 122843 [2025-02-15; online 2024-11-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Methodological aspects of investigating the resistome in pig farm environments.
Ladyhina V, Rajala E, Sternberg-Lewerin S, ..., Bongcam-Rudloff E, Dicksved J
J Microbiol Methods 230-231 (-) 107103 [2025-02-13; online 2025-02-13]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Functionally characterizing obesity-susceptibility genes using CRISPR/Cas9, in vivo imaging and deep learning.
Mazzaferro E, Mujica E, Zhang H, ..., Allalou A, den Hoed M
Sci Rep 15 (1) 5408 [2025-02-13; online 2025-02-13]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chloroplast genomic insights into adaptive evolution and rapid radiation in the genus Passiflora (Passifloraceae).
Cauz-Santos LA, da Costa ZP, Sader MA, van den Berg C, Vieira MLC
BMC Plant Biol. 25 (1) 192 [2025-02-13; online 2025-02-13]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Imaging Single Particle Profiler to Study Nanoscale Bioparticles Using Conventional Confocal Microscopy.
Sych T, Görgens A, Steiner L, ..., El Andaloussi S, Sezgin E
Nano Lett. 25 (6) 2173-2180 [2025-02-12; online 2025-01-29]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration.
Brown T, Mishra K, Elewa A, ..., Yun MH, Simon A
Cell Genomics 5 (2) 100761 [2025-02-12; online 2025-01-27]
NGI Long read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Rare and common single nucleotide variants in childhood-onset systemic lupus erythematosus.
Sayadi A, Sandling JK, Eloranta ML, ..., Rönnblom L, DISSECT Consortium
Lupus Sci Med 12 (1) - [2025-02-11; online 2025-02-11]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
High-content morphological profiling by Cell Painting in 3D spheroids
Ringers C, Holmberg D, Flobak Å, ..., Carreras Puigvert J, Spjuth O
- - (-) - [2025-02-08; online 2025-02-08]
Chemical Biology Consortium Sweden (CBCS) [Technology development]
PubMed DOI Crossref
In vivo regulation of the monocyte phenotype by Mycobacterium marinum and the ESX-1 type VII secretion system.
Munke K, Wulff L, Lienard J, Carlsson F, Agace WW
Sci Rep 15 (1) 4545 [2025-02-07; online 2025-02-07]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Whole genome sequencing in early onset advanced heart failure.
Linnér E, Czuba T, Gidlöf O, ..., Ehrencrona H, Smith JG
Sci Rep 15 (1) 4306 [2025-02-05; online 2025-02-05]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Testosterone exacerbates neutrophilia and cardiac injury in myocardial infarction via actions in bone marrow.
Svedlund Eriksson E, Lantero Rodriguez M, Halvorsen B, ..., Dahl TB, Tivesten Å
Nat Commun 16 (1) 1142 [2025-02-05; online 2025-02-05]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Reducing methane emissions by developing low-fumarate high-ethanol eco-friendly rice.
Jin Y, Liu T, Hu J, ..., Schnürer A, Sun C
Mol Plant 18 (2) 333-349 [2025-02-03; online 2025-02-05]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dissociable genetic influences on eye movements during abstract versus naturalistic social scene viewing in infancy.
Portugal AM, Taylor MJ, Tammimies K, Ronald A, Falck-Ytter T
Sci Rep 15 (1) 4100 [2025-02-03; online 2025-02-03]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The expanded genome of Hexamita inflata, a free-living diplomonad.
Akdeniz Z, Havelka M, Stoklasa M, ..., Andersson JO, Tachezy J
Sci Data 12 (1) 192 [2025-02-01; online 2025-02-01]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Unraveling the Genetics of Shared Clinical and Serological Manifestations in Patients With Systemic Inflammatory Autoimmune Diseases.
Bianchi M, Kozyrev SV, Notarnicola A, ..., Lindblad-Toh K, with the DISSECT consortium and the ImmunoArray consortium
Arthritis & rheumatology (Hoboken, N.J.) 77 (2) 212-225 [2025-02-00; online 2024-10-25]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Single cell sequencing reveals shared clonal signatures in non-malignant B- and tumor cells in T-prolymphocytic leukemia
Hesselager C, Thörn I, Marincevic M, ..., Baliakas P, Amini RM
Blood Neoplasia - (-) 100076 [2025-02-00; online 2025-02-00]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Robust approach for production of the human oncology target Aurora kinase B in complex with its binding partner INCENP.
Mattsson J, Rogne P, Landström M, Wolf-Watz M
Biochimie 229 (-) 129-140 [2025-02-00; online 2024-10-18]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
RNA Sequencing Reveals the Long Non-Coding RNA Signature in Psoriasis Keratinocytes and Identifies CYDAER as a Long Non-Coding RNA Regulating Epidermal Differentiation.
Freisenhausen JC, Luo L, Kelemen E, ..., Pivarcsi A, Sonkoly E
Exp. Dermatol. 34 (2) e70054 [2025-02-00; online 2025-02-15]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Plasma brain-derived tau correlates with cerebral infarct volume.
Gonzalez-Ortiz F, Holmegaard L, Andersson B, ..., Jern C, Stanne TM
J. Intern. Med. 297 (2) 173-185 [2025-02-00; online 2024-12-05]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Pain in idiopathic scoliosis not associated with known genetic variants for pain.
Cheng T, Diarbakerli E, Simony A, ..., Einarsdottir E, Gerdhem P
Pain Rep 10 (1) e1227 [2025-02-00; online 2024-12-19]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Modelling age at death reveals Nordic Corded Ware paleodemography
Tornberg A, Vandkilde H
Archaeol Anthropol Sci 17 (2) - [2025-02-00; online 2025-01-20]
Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Impact of plant diversity in potato-ley strip-cropping systems on soil microbial communities
Riggi LGA, Ranheim Sveen T, Castaño C, ..., Clemmensen KE, Bahram M
Applied Soil Ecology 206 (-) 105777 [2025-02-00; online 2025-02-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Impact of excess sugar on the whole genome DNA methylation pattern in human sperm.
Jönsson J, Perfilyev A, Kugelberg U, ..., Öst A, Ling C
Epigenomics 17 (2) 89-104 [2025-02-00; online 2024-12-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Evolved and Plastic Gene Expression in Adaptation of a Specialist Fly to a Novel Niche.
Steward RA, Ortega Giménez J, Choudhary S, ..., Van Aken O, Runemark A
Mol. Ecol. 34 (4) e17653 [2025-02-00; online 2025-01-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Earliest modern human genomes constrain timing of Neanderthal admixture.
Sümer AP, Rougier H, Villalba-Mouco V, ..., Prüfer K, Krause J
Nature 638 (8051) 711-717 [2025-02-00; online 2024-12-12]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
DMI fungicide resistance in Zymoseptoria tritici is unlinked to geographical origin and genetic background: a case study in Europe.
Oreiro EG, Samils B, Kildea S, ..., Zhan J, Andersson B
Pest Manag Sci 81 (2) 1103-1112 [2025-02-00; online 2024-11-06]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Diffusion Smart-seq3 of breast cancer spheroids to explore spatial tumor biology and test evolutionary principles of tumor heterogeneity.
Cougnoux A, Mahmoud L, Johnsson PA, ..., Sandberg R, Hausser J
Sci Rep 15 (1) 3811 [2025-01-30; online 2025-01-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Modulation of biological activities in adipose derived stem cells by histone deacetylation.
Abdallah S, Tabebi M, Qanadilo S, ..., Elmasry M, El-Serafi A
Sci Rep 15 (1) 3629 [2025-01-29; online 2025-01-29]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
The di-leucine motif in the host defense peptide LL-37 is essential for initiation of autophagy in human macrophages.
Rekha RS, Padhi A, Frengen N, ..., Guðmundsson GH, Bergman P
Cell Rep 44 (1) 115031 [2025-01-28; online 2024-12-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Lack of ST2 aggravates glioma invasiveness, vascular abnormality, and immune suppression.
Wicher G, Roy A, Vaccaro A, ..., Dimberg A, Forsberg-Nilsson K
Neurooncol Adv 7 (1) vdaf010 [2025-01-27; online 2025-01-27]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Association between alcohol consumption and peripheral artery disease: two de novo prospective cohorts and a systematic review with meta-analysis.
Yuan S, Wu J, Chen J, ..., Åkesson A, Larsson SC
Eur J Prev Cardiol 32 (2) 149-155 [2025-01-27; online 2024-04-16]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Exploring a pico-well based scRNA-seq method (HIVE) for simplified processing of equine bronchoalveolar lavage cells.
Fegraeus K, Riihimäki M, Nordlund J, ..., Wernersson S, Raine A
PLoS ONE 20 (1) e0317343 [2025-01-24; online 2025-01-24]
NGI Short read [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Technology development]
PubMed DOI Crossref
A de novo, mosaic and complex chromosome 21 rearrangement causes APP triplication and familial autosomal dominant early onset Alzheimer disease.
Ehn E, Eisfeldt J, Laffita-Mesa JM, ..., Nennesemo I, Graff C
Sci Rep 15 (1) 2912 [2025-01-23; online 2025-01-23]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Visualization using NIPTviewer support the clinical interpretation of noninvasive prenatal testing results.
Smeds P, Baranowska Körberg I, Melin M, Ladenvall C
BMC Med Genomics 18 (1) 15 [2025-01-20; online 2025-01-20]
Clinical Genomics [Technology development] Clinical Genomics Uppsala [Technology development]
PubMed DOI Crossref
Life-history adaptation under climate warming magnifies the agricultural footprint of a cosmopolitan insect pest.
Burc E, Girard-Tercieux C, Metz M, ..., Hart AF, Berger D
Nat Commun 16 (1) 827 [2025-01-18; online 2025-01-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Somatic CAG repeat expansion in blood associates with biomarkers of neurodegeneration in Huntington's disease decades before clinical motor diagnosis.
Scahill RI, Farag M, Murphy MJ, ..., Langbehn DR, Tabrizi SJ
Nat. Med. - (-) - [2025-01-17; online 2025-01-17]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Structure of the T=13 capsid of infectious pancreatic necrosis virus (IPNV)-a salmonid birnavirus.
Munke A, Ahmed Abdelrahim Gamil A, Mikalsen AB, ..., Evensen Ø, Okamoto K
J. Virol. - (-) e0145424 [2025-01-16; online 2025-01-16]
Cryo-EM [Service]
PubMed DOI Crossref
A thermoplastic chip for 2D and 3D correlative assays combining screening and high-resolution imaging of immune cell responses.
van Ooijen H, Verron Q, Zhang H, ..., Sandström N, Önfelt B
Cell Reports Methods - (-) 100965 [2025-01-16; online 2025-01-16]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
The Progression of Mycosis Fungoides During Treatment with Mogamulizumab: A BIO-MUSE Case Study of the Tumor and Immune Response in Peripheral Blood and Tissue.
Johansson A, Kalliara E, Belfrage E, ..., Drott K, Ek S
Biomedicines 13 (1) - [2025-01-14; online 2025-01-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Airway MMP-12 and DNA methylation in COPD: an integrative approach.
Eriksson Ström J, Kebede Merid S, Linder R, ..., Melén E, Behndig AF
Respir. Res. 26 (1) 10 [2025-01-10; online 2025-01-10]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The type of environment has a greater impact on the larval microbiota of Anopheles arabiensis than on the microbiota of their breeding water.
Assentato L, Nilsson LKJ, Brunius C, ..., Hopkins RJ, Terenius O
FEMS Microbiol. Ecol. 101 (1) - [2025-01-07; online 2024-12-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users.
Kaldhusdal V, Boger MF, Tjernlund A, ..., Czarnewski P, Broliden K
Sci Rep 15 (1) 1014 [2025-01-06; online 2025-01-06]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Model-informed drug development for antimicrobials: translational pharmacokinetic-pharmacodynamic modelling of apramycin to facilitate prediction of efficacious dose in complicated urinary tract infections.
Hernández-Lozano I, Aranzana-Climent V, Cao S, ..., Vingsbo Lundberg C, Friberg LE
J. Antimicrob. Chemother. 80 (1) 301-310 [2025-01-03; online 2024-11-16]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Nucleobase catalysts for the enzymatic activation of 8-oxoguanine DNA glycosylase 1
Hank EC, D'Arcy-Evans N, Scaletti ER, ..., Helleday T, Michel M
- - (-) - [2025-01-02; online 2025-01-02]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Cellular heterogeneity in metabolism and associated microbiome of a non-model phytoflagellate.
Jeevannavar A, Florenza J, Divne AM, Tamminen M, Bertilsson S
ISME J 19 (1) - [2025-01-02; online 2025-03-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A Rationally Designed Azobenzene Photoswitch for DNA G-Quadruplex Regulation in Live Cells.
Dudek M, López-Pacios L, Sabouri N, ..., Martinez-Fernandez L, Deiana M
Angew. Chem. Int. Ed. Engl. 64 (1) e202413000 [2025-01-02; online 2024-11-06]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Single-cell proteo-transcriptomic profiling reveals altered characteristics of stem and progenitor cells in patients receiving cytoreductive hydroxyurea in early-phase chronic myeloid leukemia.
Komic H, Nilsson MS, Wennström L, ..., Thorén FB, Martner A
Haematologica 110 (1) 117-128 [2025-01-01; online 2025-01-01]
NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dark carbon fixation is a common process in the water column of stratified boreal lakes.
Martin G, Rissanen AJ, Garcia SL, Peura S
Sci. Total Environ. 958 (-) 177433 [2025-01-01; online 2024-12-10]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Trees First Inhibit Then Promote Litter Decomposition in the Subarctic.
Jonsson M, Clemmensen KE, Castaño C, Parker TC
Ecol. Lett. 28 (1) e70063 [2025-01-00; online 2025-01-20]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service] Swedish NMR Centre (SNC) [Service]
DOI Crossref
Influence of gas composition on carbonation of quicklime granules derived from different limestone types
Olovsson K, Ma C, Niinipuu M, Eriksson M, Broström M
Chemical Engineering Journal 506 (-) 159543 [2025-01-00; online 2025-01-00]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden.
Tång Hallbäck E, Björkman JT, Dyrkell F, ..., Sikora P, Mölling P
Microb Genom 11 (1) - [2025-01-00; online 2025-01-27]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Uppsala [Collaborative]
DOI Crossref
Chemogenomic Screening in a Patient‐Derived 3D Fatty Liver Disease Model Reveals the CHRM1‐TRPM8 Axis as a Novel Module for Targeted Intervention
Youhanna S, Kemas AM, Wright SC, ..., Sundström M, Lauschke VM
Adv Sci (Weinh) 12 (3) - [2025-01-00; online 2024-11-28]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Producing dissolving pulp from agricultural waste
Wojtasz J, Sjöstedt N, Storm B, ..., Rydberg T, Bernin D
RSC Sustain. 3 (5) 2210-2220 [2025-00-00; online 2025-00-00]
Swedish NMR Centre (SNC) [Service]
SciLifeLab Data Centre
Publications 9.5.1