Publications 2025

Table
JSON
CSV
XLSX
TXT

873 publications

PubMed DOI Crossref
ZEB1, a novel junctional adhesion molecule A regulator, impacts sensitivity of pancreatic cancer-associated fibroblasts to reovirus.
Dam N, Harryvan TJ, Dang H, ..., Hawinkels LJAC, Kemp V
Mol Ther Oncol 33 (4) 201071 [2025-12-18; online 2025-10-17]
Bioinformatics Support for Computational Resources [Service] CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Accessing the proteome of extracellular vesicles via rapid acoustic isolation of a minute human blood plasma sample.
Havers M, Scott AM, Ortenlöf N, ..., Gram M, Laurell T
Anal. Chim. Acta 1379 (-) 344661 [2025-12-15; online 2025-10-01]
Clinical Proteomics Lund [Service]
PubMed DOI Crossref
Engineered calcium-regulated affinity protein for efficient internalization and lysosomal toxin delivery.
Jönsson M, Möller M, Schierholz L, ..., Brismar H, Hober S
Proc. Natl. Acad. Sci. U.S.A. 122 (48) e2509081122 [2025-12-02; online 2025-11-25]
Integrated Microscopy Technologies Stockholm [Collaborative]
DOI Crossref
Structural diversity and conservation among CRESS-DNA bacilladnaviruses revealed through cryo-EM and computational modelling
Gebhard LJ, Tomaru Y, Okamoto K, Munke A
Virol J 22 (1) - [2025-12-01; online 2025-12-01]
Cryo-EM [Service]
PubMed DOI Crossref
Sacrificial redox modulation by a secreted bacterial effector molecule mitigates oxidative stress and inflammation in vivo.
Andersson T, Anwaar S, Fuentes-Lemus E, ..., Wells JW, Lood R
Free Radic. Biol. Med. 240 (-) 339-346 [2025-12-01; online 2025-08-21]
Structural Proteomics [Collaborative]
DOI Crossref
Tree retention levels and prescribed burning effects on ectomycorrhizal fungal communities in a boreal Scots pine forest
Lariviere D, Djupström L, Lindahl BD, Dahlberg A
Forest Ecology and Management 598 (-) 123186 [2025-12-00; online 2025-12-00]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Transforming solid-state nuclear magnetic resonance towards a chemistry-ready technique
Coulon R, Gajan D, Papawassiliou W, ..., Pintacuda G, Lesage A
Solid State Nuclear Magnetic Resonance 140 (-) 102048 [2025-12-00; online 2025-12-00]
Swedish NMR Centre [Collaborative]
DOI Crossref
The utility of combining deep learning with metabarcoding to model biodiversity dynamics at a national scale
Baggström A, Goodsell R, van Dijk L, ..., Tack AJM, Andermann T
Ecological Informatics 90 (-) 103318 [2025-12-00; online 2025-12-00]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
The effect of glycerol and protein structure on chemical degradation through deamidation and isomerization
Ramm I, Diehl C, Västberg A, ..., Wahlgren M, Nilsson L
International Journal of Pharmaceutics 686 (-) 126322 [2025-12-00; online 2025-12-00]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Swapped domain orders in ZO-1 PDZ3 fusion proteins - implications for binding of established and novel targets.
Hamsikova M, Hurdalek J, Simonetti L, ..., Ivarsson Y, Zemanova L
Arch. Biochem. Biophys. 774 (-) 110634 [2025-12-00; online 2025-10-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Soil carbon and nitrogen near alder, birch and spruce trees in four mixed Norway spruce-dominated stands
Soronen P, Jämtgård S, Myllymäki M, Smolander A
Forest Ecology and Management 598 (-) 123224 [2025-12-00; online 2025-12-00]
Swedish Metabolomics Centre [Service]
DOI Crossref
Quantitative and chemical adaptation of exopolymeric substances formed by a river microbial consortium during exposure to the antibiotic trimethoprim
Duteil T, Gorzsás A, Ramstedt M
Biofilm 10 (-) 100334 [2025-12-00; online 2025-12-00]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology.
Clasen F, Yildirim S, Arıkan M, ..., Uhlen M, Shoaie S
Gut Microbes 17 (1) 2506843 [2025-12-00; online 2025-05-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
EphA2 and phosphoantigen-mediated selective killing of medulloblastoma by γδT cells preserves neuronal and stem cell integrity.
Boutin L, Liu M, Déchanet Merville J, Bedoya-Reina O, Wilhelm MT
Oncoimmunology 14 (1) 2485535 [2025-12-00; online 2025-04-07]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Development of DARPin T cell engagers for specific targeting of tumor-associated HLA/peptide complexes
Venetz-Arenas N, Schulte T, Müller S, ..., Walser M, Achour A
iScience 28 (12) 113926 [2025-12-00; online 2025-12-00]
Cryo-EM [Collaborative]
DOI Crossref
Detailed analysis of fungal communities in Norway spruce logs reveals stochastic fine-scale patterns of species and detects lichen forming fungi without their photobionts
Dahlberg A, Pioli S, Jönsson M, ..., Thor G, Nogerius VT
Fungal Ecology 78 (-) 101458 [2025-12-00; online 2025-12-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Changes in silver birch biochemical profiles and leaf-associated fungi across genetic markers induced by seed treatment with DBD plasma
Čėsnienė I, Čėsna V, Mildažienė V, ..., Shiratani M, Sirgedaitė-Šėžienė V
Plant Stress 18 (-) 101077 [2025-12-00; online 2025-12-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Acylcarnitine enrichment as a characteristic of rheumatoid arthritis fibroblast-like synoviocyte metabolic fingerprint.
Vasileiadis GK, Zhang Y, Laudette M, ..., Guma M, Maglio C
J Transl Autoimmun 11 (-) 100310 [2025-12-00; online 2025-08-19]
Swedish Metabolomics Centre [Service]
DOI Crossref
A nonlocal multiscale model for Brownian particles: Application to hindered deposition in microfluidic systems
Michael AJ, Mark A, Sasic S, Ström H
International Journal of Multiphase Flow 193 (-) 105421 [2025-12-00; online 2025-12-00]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Mapping Interactions Between Cytokines, Chemokines, Growth Factors, and Conventional Biomarkers in COVID-19 ICU-Patients
Eriksson MB, Marks-Hultström M, Åberg M, ..., Frithiof R, Larsson AO
Int J Mol Sci 26 (23) 11419 [2025-11-26; online 2025-11-26]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Blood biomarkers of Alzheimer's disease and progression across different stages of cognitive decline in the community.
Valletta M, Vetrano DL, Gregorio C, ..., Fratiglioni L, Grande G
Nat Commun - (-) - [2025-11-23; online 2025-11-23]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Single cell long read whole genome sequencing reveals somatic transposon activity in human brain.
Izydorczyk MB, Kalef-Ezra E, Horner DW, ..., Sedlazeck FJ, Proukakis C
Commun Biol 8 (1) 1627 [2025-11-20; online 2025-11-20]
NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
DOI Crossref
NUDT5 regulates the global efficacy of nucleoside analog drugs by coordinating purine synthesis and PRPP allocation
Valerie NCK, Alam S, Hormann FM, ..., Arvidsson PI, Altun M
- - (-) - [2025-11-20; online 2025-11-20]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
PTBP1 variants displaying altered nucleocytoplasmic distribution are responsible for a neurodevelopmental disorder with skeletal dysplasia.
Masson A, Paccaud J, Orefice M, ..., Thomas Q, Vitobello A
J. Clin. Invest. 135 (22) - [2025-11-17; online 2025-09-18]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Correcting CFTR mRNA splicing defects with the plant cytokine kinetin and its analogues.
Rimoldi V, Soldà G, Capalbo A, ..., Asselta R, Straniero L
J Cyst Fibros - (-) - [2025-11-15; online 2025-11-15]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
scFFPE-ATAC enables high-throughput single cell chromatin accessibility profiling in formalin-fixed paraffin-embedded samples.
Yadav RP, Xing P, Zhao M, ..., Hellström M, Chen X
Nat Commun 16 (1) 10022 [2025-11-14; online 2025-11-14]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Validation of a Genetic Risk Score Combined with Clinical Variables for Predicting Pulmonary Fibrosis in early Rheumatoid Arthritis.
Brink M, Wheeler A, England BR, Rantapää-Dahlqvist S
Arthritis Care Res (Hoboken) - (-) - [2025-11-14; online 2025-11-14]
Clinical Genomics [Service] Clinical Genomics Umeå [Service]
PubMed DOI Crossref
Ancient RNA expression profiles from the extinct woolly mammoth.
Mármol-Sánchez E, Fromm B, Oskolkov N, ..., Friedländer MR, Dalén L
Cell - (-) - [2025-11-14; online 2025-11-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A [11C]PBR28 PET study on the associations between sleep health and microglial density.
Balter LJ, Malmros J, Stenkrona P, ..., Kalpouzos G, Papenberg G
J Neuroinflammation 22 (1) 270 [2025-11-14; online 2025-11-14]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
That's So Last Season: Unraveling the Genomic Consequences of Fur Farming in Arctic Foxes (Vulpes lagopus).
Cockerill CA, Chacón-Duque JC, Bergfeldt N, ..., Dalén L, Norén K
Mol. Ecol. - (-) e70166 [2025-11-13; online 2025-11-13]
NGI Long read [Collaborative] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
DOI Crossref
Glucosinolate diversity in seven field-collected Brassicaceae species
Pormetter L, Pfalz M, Kagho MD, ..., Kroymann J, Wittstock U
PLoS ONE 20 (11) e0336172 [2025-11-13; online 2025-11-13]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Ancient host-associated microbes obtained from mammoth remains.
Guinet B, Oskolkov N, Moreland K, ..., Dalén L, van der Valk T
Cell 188 (23) 6606-6619.e24 [2025-11-13; online 2025-09-02]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Oligodendroglia as functional effectors of Multiple Sclerosis risk variants
Carlström KE, Agirre E, Sun T, ..., Goldman SA, Castelo-Branco G
- - (-) - [2025-11-12; online 2025-11-12]
CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Stable clonal contribution of lineage-restricted stem cells to human hematopoiesis.
Yoshizato T, Nilsson C, Grasso F, ..., Woll PS, Jacobsen SEW
Nat. Genet. - (-) - [2025-11-11; online 2025-11-11]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of Streptococcus pneumoniae-Specific Proteins by Surface-Shaving Proteomics.
Acha Alarcon L, Seguí G, Piñeiro-Iglesias B, ..., Moore ERB, Karlsson R
J. Proteome Res. - (-) - [2025-11-10; online 2025-11-10]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
ALC1 Finds a New Foothold on the Nucleosome’s Super-Groove
Bridges HR, Bacic L, Deindl S, Gaullier G
- - (-) - [2025-11-10; online 2025-11-10]
Cryo-EM [Service]
DOI Crossref
Metabolomics and glucose tolerance in pregnancy and postpartum: The PONCH study
Andersson-Hall U, Nord AB, Malmodin D, Holmäng A
PLoS ONE 20 (11) e0335708 [2025-11-07; online 2025-11-07]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Preclinical Validation of [177Lu]Lu-AKIR001, a CD44v6-Targeted Radiotherapeutic Entering First-in-Human Trials.
Mortensen ACL, Mohajershojai T, Gustafsson A, ..., Frejd FY, Nestor M
J Nucl Med - (-) - [2025-11-06; online 2025-11-06]
Drug Discovery and Development [Collaborative]
PubMed DOI Crossref
Spatial single-cell atlas reveals regional variations in healthy and diseased human lung.
Firsova AB, Marco Salas S, Kuemmerle LB, ..., Nawijn MC, Samakovlis C
Nat Commun 16 (1) 9745 [2025-11-05; online 2025-11-05]
In Situ Sequencing [Service]
PubMed DOI Crossref
Parallel clines of chromosomal inversion frequencies in seaweed flies are associated with thermal variation.
Nicolas LA, Berdan EL, Wellenreuther M, ..., Glémin S, Mérot C
Heredity (Edinb) - (-) - [2025-11-05; online 2025-11-05]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Improving Triplet-Triplet Annihilation Upconversion Output by a Triplet Mediator Approach: Mechanistic Insights on Homo and Hetero-Annihilation in Three-Component Systems.
Kandappa SK, Gray V
J. Am. Chem. Soc. 147 (44) 40214-40224 [2025-11-05; online 2025-10-24]
Spatial Mass Spectrometry [Service]
PubMed DOI Crossref
Cold-induced serum short-chain fatty acids act as markers of brown adipose tissue metabolism in humans.
Monfort-Pires M, U-Din M, de Mello V, ..., Klingenspor M, Virtanen KA
J. Clin. Endocrinol. Metab. - (-) - [2025-11-05; online 2025-11-05]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Comparative evaluation of Olink Explore 3072 and mass spectrometry with peptide fractionation for plasma proteomics.
Sissala N, Babačić H, Leo IR, ..., Åberg M, Pernemalm M
Commun Chem 8 (1) 327 [2025-11-04; online 2025-11-04]
Affinity Proteomics Stockholm [Collaborative] Affinity Proteomics Uppsala [Collaborative] Global Proteomics and Proteogenomics [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
T2T-CHM13 improves read mapping and detection of clinically relevant genetic variation in the Swedish population.
Schmitz D, Ameur A, Johansson Å
Genome Res. 35 (11) 2377-2388 [2025-11-03; online 2025-11-03]
Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Ancient DNA and dating evidence for the dispersal of hippos into central Europe during the last glacial.
Arnold P, Döppes D, Alberti F, ..., Rosendahl W, Hofreiter M
Curr. Biol. 35 (21) 5363-5371.e6 [2025-11-03; online 2025-10-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Studying macromolecular composition in cell-cell interfaces using 3D membrane reconstitution systems
Ragaller F, Schneider AM, Sjule E, ..., Achour A, Sezgin E
- - (-) - [2025-11-02; online 2025-11-02]
Integrated Microscopy Technologies Stockholm [Service]
DOI Crossref
Open and closed forms of assembled henipavirus nucleoprotein suggest structural basis of genome access
Jayachandran RB, Quignon E, Renner M
- - (-) - [2025-11-02; online 2025-11-02]
Cryo-EM [Service]
DOI Crossref
Metabolomic biomarkers associated with trismus and dysphagia, radiation therapy, tumour stage and location in patients with head and neck cancer
Torinsson Naluai Å, Tuomi L, Karlsson T, Finizia C, Skiljic D
Acta Otolaryngol. 145 (11) 1109-1121 [2025-11-02; online 2025-09-26]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Cryo-EM exposes diverse polymorphism in IAPP mutants to guide the rational design of peptide-based therapeutics.
Ooi SA, Valli D, Kuska MI, ..., Servitja JM, Maj M
J. Mol. Biol. 437 (21) 169405 [2025-11-01; online 2025-08-22]
Bioinformatics Support for Computational Resources [Service] Cryo-EM [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Warming-Induced Effects on Microbial Communities and Nitrogen Cycling Capacity in Tundra Litter Are Modulated by Herb Abundance and Litter Quality.
Jeanbille M, Clemmensen KE, Juhanson J, ..., Tolvanen A, Hallin S
Glob Chang Biol 31 (11) e70582 [2025-11-00; online 2025-11-12]
NGI Long read [Service] NGI Short read NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The circulating dihydrotestosterone/testosterone ratio is increased by gut microbial 5α-reductase activity in females.
Ohlsson C, Li L, Horkeby K, ..., Fall T, Grahnemo L
EBioMedicine 121 (-) 105978 [2025-11-00; online 2025-10-21]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Spatiotemporal gene expression and cellular dynamics of the developing human heart.
Lázár E, Mauron R, Andrusivová Ž, ..., Adameyko I, Lundeberg J
Nat. Genet. 57 (11) 2756-2771 [2025-11-00; online 2025-10-29]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
Reticulate and Hybrid Speciation is Promoted by Environmental Instability in an Indo-Pacific Species Complex of Whistlers (Aves: Pachycephala).
Irestedt M, Müller IA, Thörn F, ..., van der Valk T, Jønsson KA
Mol. Ecol. 34 (21) e70018 [2025-11-00; online 2025-07-12]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Reproductive Isolation due to Divergent Ecological Selection Is Accompanied by Vast Genomic Instability in Experimentally Evolved Yeast Populations.
Bendixsen DP, Gilchrist C, Haberkorn C, ..., Warringer J, Stelkens R
Mol. Ecol. 34 (22) e70110 [2025-11-00; online 2025-09-17]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Probing physicochemical properties of a mixed-anion protic ionic liquid based on [TFSI] and [NO3]
Abdou N, Pipertzis A, Swenson J, Martinelli A
Journal of Molecular Liquids 437 (-) 128418 [2025-11-00; online 2025-11-00]
Swedish NMR Centre [Service]
DOI Crossref
Paleogenomic evidence on the temporal continuity of indigenous goat exploitation in the Canary Islands
Díaz-Pérez C, Santana J, Daly KG, ..., Arnay M, Fregel R
iScience 28 (11) 113771 [2025-11-00; online 2025-11-00]
Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Novel protein targets for type 2 diabetes prevention and their mediating role in the diet-disease relationship: evidence from 2 population-based cohorts and a Mendelian randomization analysis.
Shi L, Zheng R, Brunius C, ..., Michaëlsson K, Landberg R
Am. J. Clin. Nutr. 122 (5) 1400-1412 [2025-11-00; online 2025-09-15]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Host Traits Impact the Outcome of Metagenomic Library Preparation From Dental Calculus Samples Across Diverse Mammals.
Moraitou M, Richards JL, Bolyos C, ..., Portela Miguez R, Guschanski K
Mol Ecol Resour 25 (8) e70039 [2025-11-00; online 2025-09-01]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
HAPP: High-accuracy pipeline for processing deep metabarcoding data.
Sundh J, Granqvist E, Iwaszkiewicz-Eggebrecht E, ..., Andersson AF, Ronquist F
PLoS Comput. Biol. 21 (11) e1013558 [2025-11-00; online 2025-11-07]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Growth failure in aggrecan deficiency is due to decreased extracellular matrix and impaired growth plate chondrocyte hypertrophy.
Bendre A, Ottosson L, Baroncelli M, Dou Z, Nilsson O
Bone 200 (-) 117594 [2025-11-00; online 2025-07-18]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Genomic analysis of a Neisseria meningitidis patient isolate causing a false-positive result in the Abbott Alinity m STI, Sweden: a case report.
Herrmann B, Sälléber A, Kaden R
ASM Case Rep 1 (6) - [2025-11-00; online 2025-09-30]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Genomic Landscape of Divergence in Ballan Wrasse (Labrus bergylta).
Jansson E, Ayllon F, Rubin CJ, ..., Lille-Langøy R, Glover KA
Mol. Ecol. 34 (21) e17732 [2025-11-00; online 2025-03-17]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Other NGI Short read NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genome sequencing in a cohort of 32 fetuses with genetic skeletal disorders.
Lindelöf H, Hammarsjö A, Voss U, ..., Nishimura G, Grigelioniene G
Eur. J. Hum. Genet. 33 (11) 1474-1483 [2025-11-00; online 2025-06-11]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Genetic mapping in the red mason bee implicates ANTSR as an ancient sex-determining locus in bees and ants.
Rönneburg T, Taliadoros D, Olsson A, ..., Seidelmann K, Webster MT
PLoS Biol. 23 (11) e3003458 [2025-11-00; online 2025-11-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Epigenetic alterations facilitate transcriptional and translational programs in hypoxia.
Watt K, Dauber B, Szkop KJ, ..., Larsson O, Postovit LM
Nat Cell Biol 27 (11) 1965-1981 [2025-11-00; online 2025-10-16]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ephemeral Speciation in a New Guinean Honeyeater Complex (Aves: Melidectes).
Müller IA, Thörn F, Rajan S, ..., Irestedt M, Jønsson KA
Mol. Ecol. 34 (21) e17760 [2025-11-00; online 2025-04-11]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Early prediction of subsequent peg-asparaginase inactivation in acute lymphoblastic leukaemia patients-A NOPHO ALL2008 study.
Dam M, Centanni M, Centanni D, ..., Hansen SN, Albertsen BK
Br. J. Haematol. 207 (5) 1920-1929 [2025-11-00; online 2025-09-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Depression Polygenicity and Disease Activity and Disability Worsening in Multiple Sclerosis.
Manouchehrinia A, Fitzgerald KC, Salter A, ..., Wolinsky JS, Kowalec K
Ann Neurol 98 (5) 1057-1069 [2025-11-00; online 2025-08-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Cytomegalovirus infection is common in prostate cancer and antiviral therapies inhibit progression in disease models.
Classon J, Stenudd M, Zamboni M, ..., Druid H, Frisén J
Mol Oncol 19 (11) 3035-3059 [2025-11-00; online 2025-06-10]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Characterisation of airway inflammation and proteomes associated with cystic fibrosis-related diabetes.
Diemer S, Chowdhury S, Sahl C, Happonen L, Påhlman LI
ERJ Open Res 11 (6) - [2025-11-00; online 2025-11-10]
Clinical Proteomics Lund [Service]
DOI Crossref
Aquatic fungal diversity assessment through metagenomics is still limited to current databases
Sanyal A, Kluge M, Redondo MA, ..., Bertilsson S, Peura S
Limnol Oceanogr 70 (11) 3249-3260 [2025-11-00; online 2025-09-12]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Aberrant expression of SLAMF6 constitutes a targetable immune escape mechanism in acute myeloid leukemia.
Sandén C, Landberg N, Peña-Martínez P, ..., Ågerstam H, Fioretos T
Nat Cancer 6 (11) 1821-1838 [2025-11-00; online 2025-10-03]
Clinical Genomics Lund [Service] Drug Discovery and Development [Collaborative] Structural Proteomics [Service]
PubMed DOI Crossref
High-resolution structure of proIAPP(1-48) fibrils suggests a mechanistic pathway for diabetes-associated IAPP fibril polymorphs.
Valli D, Maj M
RSC Chem Biol - (-) - [2025-10-31; online 2025-10-31]
Cryo-EM [Service]
PubMed DOI Crossref
Genetic Analysis of Apple Autumn Canopy Senescence in a Nordic Climate.
Skytte Af Sätra J
Physiol Plantarum 177 (6) e70599 [2025-10-30; online 2025-10-30]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Disease-specific epigenetic deregulation of enhancers, transposons, and polycomb targets in acute promyelocytic leukemia.
Zhong X, Cordeddu L, Gamboa-Cedeno A, ..., Lennartsson A, Lehmann S
Genome Med 17 (1) 135 [2025-10-30; online 2025-10-30]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Advancing a sensitive method for measuring mitochondrial ATP production in small muscle biopsy samples.
Wibom R, Alsina D, Naess K, ..., Wedell A, Wredenberg A
Anal. Biochem. 709 (-) 116004 [2025-10-30; online 2025-10-30]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
DOI Crossref
Regulation of ADP-ribosyltransferase activity by ART domain dimerization in PARP15
Ebenwaldner C, García Saura AG, Ekström S, ..., Cohen MS, Schüler H
Nat Commun 16 (1) - [2025-10-29; online 2025-10-29]
Structural Proteomics [Collaborative]
PubMed DOI Crossref
Persistence-Directed Testing of Chemicals Discharged from Offshore Oil Platforms Combined with Nontargeted Analysis.
Møller MT, Birch H, Sjøholm KK, ..., Martin JW, Mayer P
Environ. Sci. Technol. - (-) - [2025-10-29; online 2025-10-29]
Exposomics [Collaborative]
PubMed DOI Crossref
Paleogenomics Reveals a Loss of Bovine Lineages in Mid-latitude Asia Over the Last 200,000 Years.
Gilardet A, Oppenheimer J, Sinding MS, ..., Heintzman PD, Dalén L
Genome Biol Evol 17 (11) - [2025-10-29; online 2025-11-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Epigenetic mediation may explain intergenerational associations between maternal obesogenic lifestyle and children's birth weight: findings from the NorthPop prospective birth cohort.
De Silva K, Lundberg-Ulfsdotter R, Bodén S, ..., Domellöf M, Harlid S
Clin Epigenetics 17 (1) 180 [2025-10-29; online 2025-10-29]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A pangenome and pantranscriptome of hexaploid oat.
Avni R, Kamal N, Bitz L, ..., Spannagl M, Mascher M
Nature - (-) - [2025-10-29; online 2025-10-29]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A Novel Supergene Controls Queen Size and Colony Social Organization in the Ant Myrmica ruginodis.
Sigeman H, Seppä P, Downing PA, ..., Helanterä H, Viljakainen L
Mol. Biol. Evol. 42 (11) - [2025-10-29; online 2025-10-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Proteolytic cleavage activates the mitochondrial isoform of TOP3A.
Erdinc D, Albus CA, Rodríguez-Luis A, ..., Gustafsson CM, Nicholls TJJ
Nucleic Acids Res. 53 (20) - [2025-10-28; online 2025-11-05]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Nucleobase catalysts for the enzymatic activation of 8-oxoguanine DNA glycosylase 1.
Hank EC, D'Arcy-Evans ND, Scaletti ER, ..., Helleday T, Michel M
RSC Chem Biol - (-) - [2025-10-28; online 2025-10-28]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Identification of human gut bacteria that produce bioactive serotonin and promote colonic innervation.
Moretti CH, Grasset E, Zhu J, ..., Simrén M, Bäckhed F
Cell Rep 44 (10) 116434 [2025-10-28; online 2025-10-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Extracellular ATP is an environmental cue in bacteria.
Tronnet S, Pandey V, Lloret-Berrocal M, ..., Nordström A, Puhar A
Cell Rep 44 (10) 116356 [2025-10-28; online 2025-10-08]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Denitrification is a community trait with partial pathways dominating across microbial genomes and biomes.
Pold G, Saghaï A, Jones CM, Hallin S
Nat Commun 16 (1) 9495 [2025-10-28; online 2025-10-28]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Altered DNA Methylation Pattern Contributes to Differential Epigenetic Immune Signaling in the Upper Respiratory Airway of Unvaccinated COVID-19 Patients
Govender M, Das J, Hopkins FR, ..., Nyström S, Larsson M
Cells 14 (21) 1673 [2025-10-27; online 2025-10-27]
Clinical Genomics [Service] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Autoreactive T cells identified in patients with anti-Jo1+ antisynthetase syndrome recognise a new epitope on histidyl t-RNA synthetase.
Galindo-Feria AS, Sharma RK, Dubnovitsky A, ..., Lundberg IE, Horuluoglu B
Ann. Rheum. Dis. - (-) - [2025-10-25; online 2025-10-25]
NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comparing methods collecting mucosal secretions and detecting SARS-CoV-2 spike IgA in three laboratories across three countries.
Bladh O, Aguilera K, Sheikh-Mohamed S, ..., Thålin C, Simon V
Vaccine 65 (-) 127792 [2025-10-24; online 2025-10-04]
Affinity Proteomics Uppsala [Collaborative] Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Targeted proteomics identifies differentially expressed proteins in Sjögren's disease with incident lymphoma.
Imgenberg-Kreuz J, Fugmann C, Molin AM, ..., Nordmark G, Steering committee
RMD Open 11 (4) - [2025-10-23; online 2025-10-23]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Identification and whole-genome characterization of a novel equine papillomavirus.
Blomström AL, Hansen S, Riihimäki M
Virus Genes - (-) - [2025-10-23; online 2025-10-23]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Diagnostic and prognostic biomarkers associated with histotype in advanced epithelial ovarian cancer.
Ittner E, Swenson H, Werner L, ..., Parris TZ, Helou K
Sci Rep 15 (1) 37171 [2025-10-23; online 2025-10-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
Customizing Spider Silk: Generative Models with Mechanical Property Conditioning for Protein Engineering
Neeru D, Karlsson E, Redondo MA, ..., Rising A, Kjellström H
Transactions on ML research - (-) - [2025-10-22]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A multi-omics approach uncovers causality of IL6R on endotypes of subclinical carotid atherosclerosis and the possible role of the IL6R/OSMR pathway.
Chen QS, Björck HM, Bergman O, ..., Strawbridge RJ, Gigante B
Cardiovasc. Res. - (-) - [2025-10-22; online 2025-10-22]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Transcriptomic responses of beet to infection by beet mild yellowing virus.
Puthanveed V, Sajeevan RS, Siddique AB, ..., Lennefors BL, Kvarnheden A
BMC Plant Biol. 25 (1) 1406 [2025-10-21; online 2025-10-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Exploring Helical Fraying Linked to Dynamics and Catalysis in Adenylate Kinase.
Mattsson J, Phoeurk C, Schierholz L, ..., Sauer-Eriksson AE, Wolf-Watz M
Biochemistry 64 (20) 4281-4295 [2025-10-21; online 2025-10-03]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Toxicological and nutritional evaluation of plant cell cultures from scurvy grass (Cochlearia danica) and rowan (Sorbus aucuparia).
Cheung HL, Lo EKK, Zhang F, ..., Nordlund E, El-Nezami H
Front Toxicol 7 (-) 1655489 [2025-10-20; online 2025-10-20]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Evaluation of a diagnostic metagenomic sequencing assay: Virus detection sensitivity and background nucleic acids in three different sample materials.
Ekman M, Mahani AN, Aralaguppe SG, ..., Albert J, Allander T
J. Clin. Virol. 181 (-) 105882 [2025-10-20; online 2025-10-20]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Pan-Cancer Detection Through DNA Methylation Profiling Using Enzymatic Conversion Library Preparation with Targeted Sequencing.
Qvick A, Adolfsson E, Tornéus L, ..., Karlsson C, Helenius G
Int J Mol Sci 26 (20) - [2025-10-19; online 2025-10-19]
Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]
PubMed DOI Crossref
Glycoalkaloid-Free Starch Potatoes Generated by CRISPR/Cas9-Mediated Mutations of Genes in the Glycoalkaloid Biosynthesis Pathway Enable More Sustainable Uses of By-Products From Starch Production.
Liu Y, Merino I, Gutensohn M, ..., Hofvander P, Sitbon F
Plant Biotechnol. J. - (-) - [2025-10-18; online 2025-10-18]
Swedish Metabolomics Centre [Collaborative]
PubMed DOI Crossref
Ultrafast, remote-controlled protonation reaction enables structural changes in a phytochrome.
Shankar MK, Grunewald L, Wahlgren WY, ..., Ihalainen JA, Westenhoff S
Sci Adv 11 (42) eady0499 [2025-10-17; online 2025-10-17]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Symbiont Diversity of Rice-Associated Leafhoppers (Cicadellidae) in the Tropical Floodplains of the Tonle Sap Lake, Cambodia.
Phauk S, Assentato L, Sin S, ..., Hap S, Terenius O
Microb. Ecol. 88 (1) 109 [2025-10-17; online 2025-10-17]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Recommendations for bioinformatics in clinical practice.
Lavrichenko K, Engdal ES, Marvig RL, ..., Wirta V, Bagger FO
Genome Med 17 (1) 124 [2025-10-17; online 2025-10-17]
Clinical Genomics [Collaborative] Clinical Genomics Umeå [Collaborative]
DOI Crossref
Prodan-based solvatochromic probes for polarity imaging of organelles
Aknine N, Holban P, Ragaller F, ..., Sezgin E, Klymchenko AS
- - (-) - [2025-10-17; online 2025-10-17]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Reduced vascular leakage correlates with breast carcinoma T regulatory cell infiltration but not with metastatic propensity.
He L, Testini C, Hekmati N, ..., Strell C, Welsh M
Mol Oncol - (-) - [2025-10-16; online 2025-10-16]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Evaluating cell-specific gene expression using single-cell and single-nuclei RNA-sequencing data from human pancreatic islets of the same donors.
Engström K, Nilsson Å, Ofori JK, ..., Bacos K, Ling C
Sci Rep 15 (1) 36133 [2025-10-16; online 2025-10-16]
Clinical Genomics Lund [Service]
DOI Crossref
Do 6-9-Year-Old Children in Denmark Adhere to National Dietary Recommendations and Are There Sociodemographic Disparities? The Generation Healthy Kids Study
Holmegaard F, Eilersen AG, Lauritzen L, ..., Toft U, Trab C
- - (-) - [2025-10-16; online 2025-10-16]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Distribution of photosensitive fagopyrin in buckwheat flowers and its potential biological relevance.
Hornyák M, Kula-Maximenko M, Miszalski Z, ..., Göransson U, Slazak B
Sci Rep 15 (1) 36279 [2025-10-16; online 2025-10-16]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Association of estrogen receptor single nucleotide polymorphisms and perinatal depression.
Björvang RD, Gumbo LF, Årdahl A, ..., Fransson E, Skalkidou A
PLoS ONE 20 (10) e0334705 [2025-10-16; online 2025-10-16]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A generative deep learning approach to de novo antibiotic design.
Krishnan A, Anahtar MN, Valeri JA, ..., Wong F, Collins JJ
Cell 188 (21) 5962-5979.e22 [2025-10-16; online 2025-08-14]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
Postnatal sustentacular cells as chromaffin progenitors and tumor cells of origin in VHL-related paragangliomas.
Bullova P, Cui P, Arceo M, ..., Mints M, Schlisio S
NPJ Precis Oncol 9 (1) 324 [2025-10-15; online 2025-10-15]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Microbial hydrocarbon degradation potential of the Baltic Sea ecosystem.
Serrana JM, Dessirier B, Nascimento FJA, Broman E, Posselt M
Microbiome 13 (1) 204 [2025-10-15; online 2025-10-15]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Comparable area under the curve for three risk scores to detect interstitial lung disease in patients with rheumatoid arthritis: an external validation.
Blomberg E, Wahlin B, Södergren A
Rheumatol. Int. 45 (11) 252 [2025-10-15; online 2025-10-15]
Clinical Genomics [Service] Clinical Genomics Umeå [Service]
PubMed DOI Crossref
Structure of the central Staphylococcus aureus AAA+ protease MecA/ClpC/ClpP.
Azinas S, Wallden K, Katikaridis P, ..., Mogk A, Carroni M
Commun Biol 8 (1) 1467 [2025-10-14; online 2025-10-14]
Cryo-EM [Collaborative]
PubMed DOI Crossref
Deciphering the determinants of recombinant protein expression across the human secretome.
Masson HO, Di Giusto P, Kuo CC, ..., Rockberg J, Lewis NE
Proc. Natl. Acad. Sci. U.S.A. 122 (41) e2506036122 [2025-10-14; online 2025-10-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Anchored screening identifies transcription factor blueprints underlying dendritic cell diversity and subset-specific anti-tumor immunity.
Henriques-Oliveira L, Altman AR, Kurochkin I, ..., Pires CF, Pereira CF
Immunity 58 (10) 2419-2438.e13 [2025-10-14; online 2025-08-29]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Tick-borne encephalitis virus associated with foetal death in a bitch, a case report.
Holst BS, Bonnevie A, Spens J, ..., Syrjä P, Blomström AL
Virol J 22 (1) 326 [2025-10-13; online 2025-10-13]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Green Biorefinery Side Stream as a Source of Chlorophyll Pigments, Lignin, and Cellulose for Textile Fibers
Cid Gomes L, da Rosa Garcia A, Raeisi F, ..., Ambye-Jensen M, Bernin D
ACS Sustainable Chem. Eng. 13 (40) 16946-16957 [2025-10-13; online 2025-09-29]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Exposure to marine contaminant mixtures with different toxicity drivers reduces microzooplankton diversity.
Jönander C, Egardt J, Töpel M, ..., Brack W, Dahllöf I
FEMS Microbiol. Ecol. 101 (11) - [2025-10-13; online 2025-10-10]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Association between pro-inflammatory proteins and neurofilament in plasma from persons with epilepsy.
Sarangdhar M, Akel S, Hosseini Ashtiani S, Axelsson M, Zelano J
BMC Med 23 (1) 554 [2025-10-13; online 2025-10-13]
Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Dual-color expansion microscopy of membrane proteins using bioorthogonal labelling
Edwards S, Meineke B, Bauer S, ..., Elsässer S, Brismar H
- - (-) - [2025-10-10; online 2025-10-10]
Integrated Microscopy Technologies Stockholm [Technology development]
DOI Crossref
Integrated biological and chemical wastewater surveillance reveals local changes in dynamics of human-associated virus, bacteria and chemicals
Székely AJ, Mukhedkar D, Dillner J, Pimenoff VN
- - (-) - [2025-10-09; online 2025-10-09]
Exposomics [Service]
PubMed DOI Crossref
A human pan-disease blood atlas of the circulating proteome.
Álvez MB, Bergström S, Kenrick J, ..., Edfors F, Uhlén M
Science - (-) eadx2678 [2025-10-09; online 2025-10-09]
Affinity Proteomics Uppsala [Collaborative] Autoimmunity and Serology Profiling [Service] NGI Proteomics [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
The genomic landscape of relapsed infant and childhood KMT2A-rearranged acute leukemia.
Ahlgren L, Pilheden M, Sturesson H, ..., Ma J, Hagström-Andersson AK
Nat Commun 16 (1) 8964 [2025-10-08; online 2025-10-08]
Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
LINE-1 retrotransposons mediate cis-acting transcriptional control in human pluripotent stem cells and regulate early brain development.
Adami A, Garza R, Gerdes P, ..., Douse CH, Jakobsson J
Cell Genomics 5 (10) 100979 [2025-10-08; online 2025-08-22]
Clinical Genomics Lund [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Estimating allele frequencies, ancestry proportions and genotype likelihoods in the presence of mapping bias.
Günther T, Goldberg A, Schraiber JG
G3 (Bethesda) 15 (10) - [2025-10-08; online 2025-07-30]
Ancient DNA [Collaborative] Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Climate-driven deoxygenation promoted potential mercury methylators in the past Black Sea water column
Zhong M, Barrenechea Angeles I, More KD, ..., Coolen MJL, Capo E
Nat Water - (-) - [2025-10-08; online 2025-10-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Associations of the intestinal microbiota with plasma bile acids and inflammation markers in Crohn's disease and ulcerative colitis.
Prast-Nielsen S, Granström AL, Kiasat A, ..., Gustafsson UO, Engstrand L
Sci Rep 15 (1) 35039 [2025-10-08; online 2025-10-08]
Affinity Proteomics Stockholm [Service]
DOI Crossref
Spatial mapping of DNA synthesis reveals dynamics and geometry of human replication nanostructures
Hawgood M, Urién B, Agostinho A, ..., Blom H, Lemmens B
EMBO J. - (-) - [2025-10-07; online 2025-10-07]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Long-term warming raises risks of seasonal seafloor methane release in the coastal Baltic Sea.
Li S, Ketzer M, Chang C, ..., Hylander S, Dopson M
Front Microbiol 16 (-) 1636301 [2025-10-07; online 2025-10-07]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Characterising the Periodontal Granulation Tissue Using scRNAseq.
Zhu W, Fung K, Dhami P, ..., Zhang C, Neves VCM
J Clin Periodontol - (-) - [2025-10-07; online 2025-10-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Autoimmunity-associated DIORA1 binds the MRCK family of serine/threonine kinases and controls cell motility.
Tršelič T, Pelo N, Martin de Fremont G, ..., Espinosa A, Wahren-Herlenius M
Proc. Natl. Acad. Sci. U.S.A. 122 (40) e2426917122 [2025-10-07; online 2025-10-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The CHCHD2-CHCHD10 protein complex is modulated by mitochondrial dysfunction and alters lipid homeostasis in the mouse brain.
Gerlach J, Pireddu P, Zhang X, ..., Svenningsson P, Filograna R
Cell Death Dis 16 (1) 693 [2025-10-06; online 2025-10-06]
Spatial Mass Spectrometry [Collaborative]
DOI Crossref
Characterizing 13C Spectral Assignments and Substituent Distributions of Hydroxypropylmethylcellulose Acetyl Succinate Using Dynamic Nuclear Polarization Nuclear Magnetic Resonance Spectroscopy
Cosquer RP, Pinon AC, Šoltésová M, ..., Tobyn M, Blanc F
Mol. Pharmaceutics 22 (10) 5870-5878 [2025-10-06; online 2025-08-29]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance.
Rodríguez-Gijón A, Pacheco-Valenciana A, Milke F, ..., Rodriguez-R LM, Garcia SL
Sci Rep 15 (1) 34482 [2025-10-03; online 2025-10-03]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Reliable on-treatment prognostication and target identification with a customized assay for circulating tumor DNA in patients with newly diagnosed pancreatic cancer.
Petersson A, Svensson M, Hau SO, ..., Gisselsson D, Jirström K
Sci Rep 15 (1) 34481 [2025-10-03; online 2025-10-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Lund [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Quantitative temporal analysis of pancreatic islet T lymphocyte and macrophage infiltration heralded by serum IgE in congenic BioBreeding (BB) Gimap5-/- rats at risk for insulitis and acute onset diabetes.
Jönsson J, Faxius L, Tångrot J, ..., Ramelius A, Lernmark Å
Inflamm Res 74 (1) 134 [2025-10-03; online 2025-10-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Proteomic analysis of nemaline myopathy in infants reveals distinct common dysregulated proteins and cellular pathways.
Hedberg-Oldfors C, Bedir AZ, Visuttijai K, Michael E, Oldfors A
Front Neurol 16 (-) 1661747 [2025-10-03; online 2025-10-03]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Latent plasticity of the human pancreas across development, health, and disease.
Mereu E, Balboa D, Liebig J, ..., Conrad C, Eils R
bioRxiv - (-) - [2025-10-03; online 2025-10-03]
Spatial Proteomics [Service]
PubMed DOI Crossref
Innate immune cell subsets are enriched in synovial fluid of ACPA-negative rheumatoid arthritis and characterized by distinct type I IFN gene signatures.
Argyriou A, Wadsworth MH, Fienman J, ..., Malmström V, Chemin K
Ann. Rheum. Dis. - (-) - [2025-10-03; online 2025-10-03]
NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Correlation of autoantibody profiles with clinical parameters in exfoliative glaucoma patients.
Potter R, Ayala M, Tilevik A
Int Ophthalmol 45 (1) 404 [2025-10-03; online 2025-10-03]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Prematurity and genetic liability for autism spectrum disorder.
Zhang Y, Yahia A, Sandin S, Åden U, Tammimies K
Genome Med 17 (1) 108 [2025-10-02; online 2025-10-02]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
The circadian clock of Populus affects physiological, transcriptional and metabolomic responses to osmotic and ionic components of salt stress
Ibáñez C, Vergara A, Castro D, ..., Nilsson O, Eriksson ME
npj Biol Timing Sleep 2 (1) - [2025-10-01; online 2025-10-01]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Role of GDH and PARP inhibitors as novel treatments for SDHB-deficient PPGLs.
Tabebi M, Abdallah S, El-Serafi A, Söderkvist P, Gimm O
Endocr. Relat. Cancer 32 (10) - [2025-10-01; online 2025-10-08]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Developmental low-dose bisphenol A exposure leads to extensive transcriptome female masculinization and male feminization later in life.
Lind T, Dunder L, Lejonklou MH, ..., Melhus H, Lind L
Commun Med (Lond) 5 (1) 410 [2025-10-01; online 2025-10-01]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Swedish Metabolomics Centre [Service] Swedish NMR Centre [Service]
PubMed DOI Crossref
Detection and characterisation of ligand-induced conformational changes in acetylcholine binding proteins using biosensors and X-ray crystallography.
FitzGerald EA, Cederfelt D, Kovryzhenko D, ..., de Esch IJP, Danielson UH
RSC Chem Biol 6 (10) 1625-1639 [2025-10-01; online 2025-08-13]
Drug Discovery and Development [Collaborative]
PubMed DOI Crossref
Decoding the genetic drivers of marine bacterial blooms through comparative genomics.
Rey-Velasco X, Auladell A, Deulofeu-Capo O, ..., Sánchez O, Gasol JM
Microbiome 13 (1) 198 [2025-10-01; online 2025-10-01]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chromosome-level assembly of the club-legged grasshopper (Gomphocerus sibiricus) genome.
Palacios-Gimenez OM, Varma M, Cheng X, ..., Suh A, Schielzeth H
G3 (Bethesda) - (-) - [2025-10-01; online 2025-10-01]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Bioinspired mycobacterial lipid coating of porous particles for enhanced antimicrobial efficacy.
Campos Pacheco JE, Davids C, Yalovenko T, ..., Godaly G, Valetti S
Eur J Pharm Sci 213 (-) 107225 [2025-10-01; online 2025-08-06]
Swedish Metabolomics Centre [Collaborative]
PubMed DOI Crossref
Whole Genome Sequencing Reveals How Plasticity and Genetic Differentiation Underlie Sympatric Morphs of Arctic Charr.
Kurta K, Fedi MO, Baker K, ..., Jónsson ZO, Andersson L
Mol. Ecol. 34 (19) e70085 [2025-10-00; online 2025-08-26]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Toward a Species Search Engine: KISSE Offers a Rigorous Statistical Framework for Bone Collagen Tandem Mass Spectrometry Data.
Gharibi H, Saei AA, Chernobrovkin AL, ..., Gaetani M, Zubarev RA
Adv Sci (Weinh) 12 (40) e03963 [2025-10-00; online 2025-08-11]
Chemical Proteomics [Technology development]
PubMed DOI Crossref
The transcription factor LHX2 mediates and enhances oncogenic BMP signaling in medulloblastoma.
Ohata Y, Ali MM, Tsubakihara Y, ..., Swartling FJ, Moustakas A
Cell Death Differ. 32 (10) 1915-1929 [2025-10-00; online 2025-03-28]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The barramundi (Lates calcarifer) mucus glycome is conserved across oral, skin and gill tissues but varies between individuals.
Thomsson KA, Benktander J, Erhardsson M, ..., Taylor RS, Lindén SK
Fish Shellfish Immunol. 165 (-) 110515 [2025-10-00; online 2025-06-25]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Systemic inflammatory biomarkers in relation to lung function and exercise-induced bronchoconstriction in adolescents.
Ersson K, Alving K, Emtner M, ..., Johansson H, Malinovschi A
Pediatr Allergy Immunol 36 (10) e70231 [2025-10-00; online 2025-10-24]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
State-of-the-Art and Future Directions in Structural Proteomics.
Happonen LJ, Varjosalo M
Mol. Cell Proteomics 24 (10) 101065 [2025-10-00; online 2025-09-03]
Structural Proteomics [Technology development]
PubMed DOI Crossref
Spatial transcriptomics exploration of the primary neuroblastoma microenvironment in archived FFPE samples unveils novel paracrine interactions.
Siaw JT, Merseburger P, Borenäs M, ..., Palmer RH, Van den Eynden J
J. Pathol. 267 (2) 181-195 [2025-10-00; online 2025-08-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sleep health associations with serum metabolites in healthy adults.
Sørensen C, Dudka I, Virel A, ..., Kalpouzos G, Sindi S
Brain Behav Immun Health 48 (-) 101050 [2025-10-00; online 2025-07-04]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Progenitor exhausted PD-1+ T cells are cellular targets of immune checkpoint inhibition in atherosclerosis.
Mulholland M, Chalou A, Andersson SHA, ..., Gisterå A, Engelbertsen D
Nat Cardiovasc Res 4 (10) 1311-1328 [2025-10-00; online 2025-10-07]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Primary and Secondary Symbionts of Cambodian Cicadellidae and the Role of Parasitisation.
Phauk S, Assentato L, Meas S, Terenius O
Environ Microbiol Rep 17 (5) e70196 [2025-10-00; online 2025-09-17]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Morphology and molecular mobility of plasticized lignins studied with polarization transfer solid-state NMR and SAXS
Henrik-Klemens Å, Sparrman T, Björn L, Matic A, Larsson A
Polymer Testing 151 (-) 108942 [2025-10-00; online 2025-10-00]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Microbiota modulates compound-specific toxicity of environmental chemicals: A multi-omics analysis in zebrafish embryos.
Gugescu L, Yang Y, Kool JF, ..., Wincent E, Alenius H
Environ Int 204 (-) 109828 [2025-10-00; online 2025-09-28]
Swedish Metabolomics Centre [Service]
DOI Crossref
Metaaltijden (vol. 12). Bijdragen in de studie van de metaaltijden: The role of elk (Alces alces) in the Dutch Bronze Age
Brusgaard N, Aal J, van Dijk J
- - (-) - [2025-10-00; online 2025-10-00]
Ancient DNA [Service]
PubMed DOI Crossref
In Atlantic salmon skin infested with salmon lice, elevated seawater temperatures change gene expression and mucus glycosylation, which promotes pathogen binding.
Thomsson KA, Sveen L, Benktander J, ..., Ytteborg E, Linden SK
Fish Shellfish Immunol. 165 (-) 110557 [2025-10-00; online 2025-07-08]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Impact of systemic SARS-CoV-2 vaccination on mucosal IgA responses to subsequent breakthrough infection.
Marking U, Bladh O, Aguilera K, ..., Åberg M, Thålin C
EBioMedicine 120 (-) 105912 [2025-10-00; online 2025-09-16]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Harmonizing human plasma metabolite annotation with Plasma Benchmark.
Koistinen V, Meuronen T, Keski-Rahkonen P, ..., Scalbert A, Hanhineva K
Nat Metab 7 (10) 1955-1957 [2025-10-00; online 2025-09-12]
Chalmers Mass Spectrometry Infrastructure [Technology development]
PubMed DOI Crossref
Frequent longitudinal blood microsampling and proteome monitoring identify disease markers and enable timely intervention in a mouse model of type 1 diabetes.
Parajuli A, Bendes A, Byvald F, ..., Schwenk JM, Flodström-Tullberg M
Diabetologia 68 (10) 2277-2289 [2025-10-00; online 2025-08-04]
Affinity Proteomics Stockholm [Service]
DOI Crossref
Effects of rainfall exclusion on soil fungi in a boreal forest landscape
Koelemeijer IA, Castaño C, Clemmensen KE, ..., Jönsson M, Hylander K
Fungal Ecology 77 (-) 101452 [2025-10-00; online 2025-10-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dynamics of SARS-CoV-2 variants and mutations in Central Sweden between 2023 and 2024 and their potential implications on monoclonal antibodies pemivibart and sipavibart as PrEP in the region.
Haars J, Wallin F, Elfving K, ..., Palanisamy N, Lennerstrand J
Infect Dis (Lond) 57 (10) 956-965 [2025-10-00; online 2025-05-26]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Cross-Sectional and Longitudinal Immunoprofiling of Oligoarticular Juvenile Idiopathic Arthritis Reveals Different Patterns in Synovial Fluid and Plasma.
Qu H, Neog M, Palmblad K, ..., Aulin C, Harris HE
Scand. J. Immunol. 102 (4) e70055 [2025-10-00; online 2025-09-27]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Add-on probiotics for inflammatory depression - A double-blind randomized placebo-controlled trial.
Söderberg Veibäck G, Lindahl J, Suneson K, ..., Wolkowitz OM, Lindqvist D
Brain, Behavior, and Immunity 129 (-) 348-358 [2025-10-00; online 2025-06-06]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Use of skeletal muscle fiber composition to assess relationship between amino acid metabolism and insulin sensitivity.
Magnusson TE, Blackwood SJ, Tischer D, ..., Chorell E, Katz A
Eur. J. Endocrinol. 193 (4) 553-563 [2025-09-30; online 2025-09-20]
Swedish Metabolomics Centre [Service]
DOI Crossref
Disrupting Notch signalling by a small molecule inhibiting dihydroorotate dehydrogenase activity
Braune EB, Wienke D, Seshire A, ..., Lain S, Lendahl U
- - (-) - [2025-09-30; online 2025-09-30]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Cellular Hallmarks From Volume Electron Microscopy Reveal Developmental Progression of Plasmodium Ookinetes.
Darif N, Rheinnecker M, Hildenbrand K, ..., Schwab Y, Frischknecht F
Adv Sci (Weinh) - (-) e08250 [2025-09-30; online 2025-09-30]
Integrated Microscopy Technologies Umeå [Collaborative]
PubMed DOI Crossref
Plasma proteomic and metabolomic profiling of coronary and carotid atherosclerosis in the SCAPIS study-differences and similarities.
Fall T, Gummesson A, Hammar U, ..., Östgren CJ, Engström G
Cardiovasc. Res. 121 (11) 1649-1652 [2025-09-29; online 2025-05-06]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Comparative analysis of commercial human primary mesangial cell, implications for experimental design.
Johansson A, Narasimhan G, Keuenhof K, Boi R, Ebefors K
BMC Nephrol 26 (1) 539 [2025-09-29; online 2025-09-29]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Allosteric control of the bacterial ClpC/ClpP protease and its hijacking by antibacterial peptides.
Jenne T, Engelhardt L, Baronaite I, ..., Carroni M, Mogk A
EMBO J. - (-) - [2025-09-29; online 2025-09-29]
Cryo-EM [Service]
DOI Crossref
Scalable deep learning reconstruction for accelerated multidimensional nuclear magnetic resonance spectroscopy of proteins
Huang Y, Gao Y, Tu Z, ..., Guo D, Qu X
Sci Adv 11 (39) - [2025-09-26; online 2025-09-26]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Liquid biomarkers associate with TGF-β Type I receptor and hypoxia in kidney cancer.
Mallikarjuna P, Erdem C, Beorlegui RI, ..., Kamali-Moghaddam M, Landström M
Signal Transduct Target Ther 10 (1) 309 [2025-09-26; online 2025-09-26]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
An injury-associated lobular microniche is associated with the classical tumor cell phenotype in pancreatic cancer.
Söderqvist S, Viljamaa A, Geyer N, ..., Fernández Moro C, Gerling M
Nat Commun 16 (1) 8307 [2025-09-26; online 2025-09-26]
Bioinformatics Support for Computational Resources [Service] CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Patients with systemic lupus erythematosus (SLE) have an increased bisphenol A methylation score linked to SLE risk genes and selected clinical subphenotypes.
Vestin H, Oparina N, Eloranta ML, ..., Imgenberg-Kreuz J, Leonard D
RMD Open 11 (3) - [2025-09-25; online 2025-09-25]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Oral mucosal manifestations with identical mutations to the bone marrow in a patient with VEXAS syndrome
Vasaitis L, Blomstrand L, Pandzic T, ..., Baliakas P, Ljungström V
Rheumatology & Autoimmunity - (-) - [2025-09-25; online 2025-09-25]
Clinical Genomics [Service] Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
Intrinsic heterogeneity of primary cilia revealed through spatial proteomics.
Hansen JN, Sun H, Kahnert K, ..., Axelsson U, Lundberg E
Cell - (-) - [2025-09-25; online 2025-09-25]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Apoptotic bodies in phytoplankton suggest evolutionary conservation of cell death mechanisms.
Corredor L, Vergou GA, Skalický V, ..., Gorzsás A, Funk C
Nat Commun 16 (1) 8427 [2025-09-25; online 2025-09-25]
Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Position specific isotope analysis of diethylamine by 2H and 13C NMR - Dual nucleus analysis in forensic investigation of illegal use of chemical weapons.
Lindberg S, Sparrman T, Schleucher J, Norlin R
Talanta 298 (Pt A) 128912 [2025-09-24; online 2025-09-24]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Major Histocompatibility Complex modulation of Batrachochytrium dendrobatidis and Ranavirus infections in amphibians.
Cortazar-Chinarro M, Richter-Boix A, Halvarsson P, Palomar G, Bosch J
J. Evol. Biol. - (-) - [2025-09-24; online 2025-09-24]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
High Cerebrospinal DOPA Decarboxylase Level Predicts Cognitive Decline in Parkinson's Disease.
Sturchio A, Paslawski W, Khosousi S, ..., Iwaki H, Svenningsson P
Mov Disord Clin Pract - (-) - [2025-09-24; online 2025-09-24]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Corrigendum to "In vitro study of cold atmospheric plasma-induced proliferation inhibition and morphological changes in head and neck carcinoma cell lines" [Journal of Dentistry161 (2025) 106007].
Maravic T, Petrucci G, di Giacomo V, ..., Breschi L, Perrotti V
J Dent - (-) 106098 [2025-09-24; online 2025-09-24]
Integrated Microscopy Technologies Gothenburg [Technology development]
PubMed DOI Crossref
Tertiary lymphoid structures in Merkel cell carcinoma facilitate naïve and central memory T-cell infiltration linked to immunotherapy response.
Srinivas N, Spassova I, Lei KC, ..., Lui WO, Becker JC
J Immunother Cancer 13 (9) - [2025-09-23; online 2025-09-23]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Influence of the pre-membrane and envelope proteins on structure, pathogenicity, and tropism of tick-borne encephalitis virus.
Rosendal E, Bisikalo K, Willekens SMA, ..., Nilsson E, Överby AK
J. Virol. 99 (9) e0087025 [2025-09-23; online 2025-08-19]
Cryo-EM [Service] Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
FET fusion oncoproteins enrich SWI/SNF complex subtypes and interaction partners.
Lindén M, Andersson L, Albatrok H, ..., Åman P, Ståhlberg A
Cell Mol Biol Lett 30 (1) 107 [2025-09-23; online 2025-09-23]
Bioinformatics Support for Computational Resources [Service] Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
SAG1.3-derived Frizzled-targeting small molecule compounds.
Grätz L, Turku A, Kozielewicz P, ..., Gmeiner P, Schulte G
J. Biol. Chem. - (-) 110751 [2025-09-22; online 2025-09-22]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Effects of Stress Coping Styles and Social Defeat on Zebrafish Behaviour and Brain Transcriptomics.
Hubená P, Benrejdal L, Brodin D, ..., Bergman P, Winberg S
Neurosci Bull - (-) - [2025-09-22; online 2025-09-22]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Natural Language Response Formats for Assessing Depression and Worry With Large Language Models: A Sequential Evaluation With Model Pre-Registration.
Gu Z, Kjell K, Schwartz HA, Kjell O
Assessment - (-) 10731911251364022 [2025-09-20; online 2025-09-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Late Iron Age and Roman equine breeding north of the Alps: Genetic insights and cultural implications.
Sharif MB, Mohaseb AF, Orlando L, ..., Trixl S, Mohandesan E
iScience 28 (9) 113224 [2025-09-19; online 2025-08-13]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Controllable properties and versatile dynamics of meron topological magnetism in van der Waals multiferroic CuCrP2S6.
Cui Q, Ge Y, Bai X, Sassa Y, Delin A
iScience 28 (9) 113291 [2025-09-19; online 2025-08-05]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Unveiling histotype-specific biomarkers in ovarian carcinoma using proteomics.
Werner L, Ittner E, Swenson H, ..., Parris TZ, Helou K
Mol Ther Oncol 33 (3) 201019 [2025-09-18; online 2025-07-16]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Low-Dose Aspirin for PI3K-Altered Localized Colorectal Cancer.
Martling A, Hed Myrberg I, Nilbert M, ..., Lindberg J, ALASCCA Study Group
N. Engl. J. Med. 393 (11) 1051-1064 [2025-09-18; online 2025-09-17]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
DOI Crossref
Continuous Serial Electron Diffraction for High Quality Protein Structures
Hofer G, Wang L, Pacoste L, ..., Xu H, Zou X
- - (-) - [2025-09-17; online 2025-09-17]
Cryo-EM [Service]
PubMed DOI Crossref
Tumor evolution and immune microenvironment dynamics in primary and relapsed mantle cell lymphoma.
Wan H, Ren W, Yang M, ..., Sander B, Pan-Hammarström Q
Cell Reports Medicine 6 (9) 102318 [2025-09-16; online 2025-08-27]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Targeted ferroptosis induction enhances chemotherapy efficacy in chemoresistant neuroblastoma.
Mañas A, Seger A, Adamska A, ..., Aaltonen K, Bexell D
NPJ Precis Oncol 9 (1) 311 [2025-09-16; online 2025-09-16]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Pronounced seasonal dynamics in transcription of vitamin B1 acquisition strategies diverge among Baltic Sea bacterioplankton.
Pérez-Martínez C, Pontiller B, Martínez-García S, ..., Lundin D, Pinhassi J
Environ Microbiome 20 (1) 115 [2025-09-16; online 2025-09-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Effects of Oligolysine-Polyethylene Glycol Coating on the Biodistribution of Wireframe DNA Origami Nanosheets in Zebrafish Embryos.
Kolonelou C, Engström E, Bräutigam L, ..., Andersson O, Teixeira AI
ACS Nano 19 (36) 32145-32157 [2025-09-16; online 2025-09-03]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Circulating soluble LOX-1 and patient prognosis after an acute coronary syndrome.
Schiopu A, Svedlund S, Narasimhan G, ..., Nilsson J, Gan LM
Heart - (-) - [2025-09-16; online 2025-09-16]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Protocol for genomic surveillance of Plasmodium falciparum antigens using amplicon-based PacBio long-read sequencing.
Plaza DF
STAR Protoc 6 (4) 104093 [2025-09-15; online 2025-09-15]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Method development and validation for quantitative determination of urinary biomarkers of food intake for multiple foods.
Hassenberg C, Soukup ST, Armeni M, ..., Kulling SE, Mack CI
Journal of Chromatography B 1268 (-) 124793 [2025-09-15; online 2025-09-15]
Chalmers Mass Spectrometry Infrastructure [Technology development]
PubMed DOI Crossref
Insights into the Metabolic Adaptations of a Carbapenem-Resistant Klebsiella pneumoniae Strain on Exposure to Sublethal Concentrations of Ertapenem.
Jaén-Luchoro D, Salvà-Serra F, Piñeiro-Iglesias B, ..., Moore ERB, Karlsson R
Int J Mol Sci 26 (18) - [2025-09-15; online 2025-09-15]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Temporal control of human DNA replication licensing by CDK4/6-RB signalling and chemical genetics.
Sosenko Piscitello A, Nilsson AS, Hawgood M, ..., Halazonetis TD, Lemmens B
Nat Commun 16 (1) 8268 [2025-09-12; online 2025-09-12]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation.
Shafeeq S, Pannanusorn S, Dainat J, ..., Nystedt B, Römling U
Microbiol Resour Announc 14 (9) e0130024 [2025-09-11; online 2025-08-11]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Personality and repeated social defeat affect health condition and gene expression in the skin and intestines in zebrafish.
Benrejdal L, Hubená P, Brodin D, ..., Winberg S, Bergman P
Prog. Neuropsychopharmacol. Biol. Psychiatry - (-) 111487 [2025-09-09; online 2025-09-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Immunogenicity and innate immunity to high-dose and repeated vaccination of modified mRNA versus unmodified mRNA.
Engstrand O, Joas G, Miranda MC, ..., Reinhardt A, Loré K
Mol Ther Nucleic Acids 36 (3) 102588 [2025-09-09; online 2025-06-09]
Affinity Proteomics Stockholm [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic heterogeneity in childhood leukemia/lymphoma: a Turkish cohort with strong predisposition.
Onder G, Ozdemir O, Taylan F, ..., Ozbek U, Ng OH
Front Genet 16 (-) 1624306 [2025-09-09; online 2025-09-09]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Computational pathology annotation enhances the resolution and interpretation of breast cancer spatial transcriptomics data.
Li T, Yang Q, Acs B, ..., Chen X, Hartman J
NPJ Precis Oncol 9 (1) 310 [2025-09-09; online 2025-09-09]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Avenanthramides and avenacosides as biomarkers of oat intake: a pharmacokinetic study of solid and liquid oat consumption under single and repeated dose conditions.
Armeni M, Cardilin T, Fristedt R, ..., Savolainen O, Landberg R
Nutr J 24 (1) 136 [2025-09-09; online 2025-09-09]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity.
Xu Y, Lou D, Chen P, ..., Hu Y, Wang J
Dev. Cell 60 (17) 2248-2263.e11 [2025-09-08; online 2025-05-09]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Polygenic scores in Familial breast cancer cases with and without pathogenic variants and the risk of contralateral breast cancer.
Kvist A, Kämpe A, Törngren T, ..., Borg Å, Eriksson D
Breast Cancer Res. 27 (1) 160 [2025-09-08; online 2025-09-08]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Uppsala [Service]
DOI Crossref
Proteome integral solubility alteration assay for monitoring antibody-antigen cell interactions
Lu W, Lundstrom SL, Hou Y, ..., Gaetani M, Zubarev RA
- - (-) - [2025-09-06; online 2025-09-06]
Chemical Proteomics [Technology development]
PubMed DOI Crossref
Mass Spectrometry-Based Analysis of Surface Proteins in Staphylococcus aureus Clinical Strains: Identification of Promising k-mer Targets for Diagnostics.
Svetlicic E, Alarcon LA, Karlsson R, Jers C, Mijakovic I
J. Proteome Res. 24 (9) 4575-4585 [2025-09-05; online 2025-08-07]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
CRISPR-Cas9 targeting of G-Quadruplex DNA in ADH1 promoter highlights its role in transcriptome and metabolome regulation.
Obi I, Sengupta P, Sabouri N
Nucleic Acids Res. 53 (17) - [2025-09-05; online 2025-09-18]
Swedish Metabolomics Centre [Service] Swedish NMR Centre [Service]
PubMed DOI Crossref
Subtelomeric elements provide stability to short telomeres in telomerase-negative cells of the budding yeast Naumovozyma castellii.
Jaiswal RK, Garibo Domingo T, Grunchec H, ..., Elhaik E, Cohn M
Curr Genet 71 (1) 19 [2025-09-03; online 2025-09-03]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Next-Generation Sequencing in the Diagnostic Workup of Neonatal Dried Blood Spot Screening in Sweden 2015-2023.
Sörensen L, Asin-Cayuela J, Barbaro M, ..., Wedell A, Zetterström RH
Int J Neonatal Screen 11 (3) - [2025-09-03; online 2025-09-03]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Metabolite Biomarkers Linking a High-Fiber Rye Intervention with Cardiometabolic Risk Factors: The RyeWeight Study.
Unión Caballero A, Meroño T, Åberg S, ..., Landberg R, Andrés-Lacueva C
J. Agric. Food Chem. 73 (35) 21869-21879 [2025-09-03; online 2025-08-21]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Genetic Adaptation to Brackish Water and Spawning Season in European Cisco.
Deng Q, Goodall J, Bergenius Nord M, ..., Pettersson OV, Andersson L
Mol. Ecol. - (-) e70094 [2025-09-03; online 2025-09-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Collaborative] NGI Other NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Tissue Architecture Modulates Compositional and Structural Properties of Corneal Myofibroblast-Derived Matrix.
Giannopoulos A, Backman LJ, Danielson P
Transl Vis Sci Technol 14 (9) 9 [2025-09-02; online 2025-09-04]
Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
SPNS1 variants cause multiorgan disease and implicate lysophospholipid transport as critical for mTOR-regulated lipid homeostasis.
He M, Ding M, Chocholouskova M, ..., Torta F, Silver DL
J. Clin. Invest. 135 (17) - [2025-09-02; online 2025-07-03]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
DOI Crossref
Limited resource use overlaps among small pelagic fish species in the central Baltic Sea
Jan KMG, Hentati-Sundberg J, Larson N, Winder M
- 82 (9) - [2025-09-02; online 2025-09-05]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Plasma membrane labelling efficiency, internalization and partitioning of functionalized fluorescent lipids as a function of lipid structure.
Sezgin E
RSC Chem Biol - (-) - [2025-09-01; online 2025-09-01]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Immune-coagulation dynamics in severe COVID-19 revealed by autoantibody profiling and multi-omics integration.
Ambikan AT, Cederholm A, Rezene S, ..., Landegren N, Gupta S
Sci Rep 15 (1) 32149 [2025-09-01; online 2025-09-01]
Affinity Proteomics Uppsala [Service] Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Variants in the DDX6-CXCR5 autoimmune disease risk locus influence the regulatory network in immune cells and salivary gland.
Wiley MM, Radziszewski M, Khatri B, ..., Nordmark G, Lessard CJ
Ann. Rheum. Dis. 84 (9) 1512-1527 [2025-09-00; online 2025-05-30]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Systematic profiling of cancer-fibroblast interactions reveals drug combinations in ovarian cancer.
Gudoityte G, Sharma O, Leuenberger L, ..., Kallioniemi O, Seashore-Ludlow B
Mol Oncol 19 (9) 2574-2593 [2025-09-00; online 2025-05-24]
Affinity Proteomics Stockholm [Service] Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Small Bugs, Big Data: Metagenomics for Arthropod Biodiversity Monitoring.
López Clinton S, Iwaszkiewicz-Eggebrecht E, Miraldo A, ..., Ronquist F, van der Valk T
Ecol Evol 15 (9) e72163 [2025-09-00; online 2025-09-16]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sex Dependent and Sjögren Disease Like Immune Responses Against Phosphoantigens in Balb/C Mice.
Czwakiel P, Brindefalk B, Eghbali A, ..., Troye-Blomberg M, Faye I
Scand. J. Immunol. 102 (3) e70052 [2025-09-00; online 2025-09-03]
Autoimmunity and Serology Profiling [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Resistance and resilience of co-occurring nitrifying microbial guilds to drying-rewetting stress in soil
Müller LJ, Alicke M, Romdhane S, ..., Saghaï A, Hallin S
Soil Biology and Biochemistry 208 (-) 109846 [2025-09-00; online 2025-09-00]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Proteomic biomarkers and pathway analysis for progression to heart failure in three epidemiological representative cohorts.
Dieden A, Girerd N, Ottosson F, ..., Jujić A, Magnusson M
Eur. J. Heart Fail. 27 (9) 1764-1774 [2025-09-00; online 2024-10-28]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Pericytes change function depending on glioblastoma vicinity: emphasis on immune regulation.
Buizza C, Carlsson R, Gamper C, ..., Bengzon J, Paul G
Mol Oncol 19 (9) 2491-2514 [2025-09-00; online 2025-07-17]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Oral contraceptive use increases bone density and reduces the risk of osteoporosis.
Ivansson EL, Johansson T, Karlsson T, Johansson Å
Eur. J. Epidemiol. 40 (9) 1123-1131 [2025-09-00; online 2025-07-09]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Ontogeny-specific induction of the KMT2A::AFF1-fusion drives development of a distinct CD24 positive pre-leukemic state.
Calderón AS, Ghazanfari R, Masoumi Z, ..., Bryder D, Böiers C
Leukemia 39 (9) 2099-2111 [2025-09-00; online 2025-07-11]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Multilayered Epigenetic Analysis Identifies a Molecular Portrait for Psychological Resilience in Patients With Breast Cancer.
Richter C, Dethlefsen O, Axelsson U, ..., Hallberg IR, Borrebaeck CAK
Biol Psychiatry Glob Open Sci 5 (5) 100545 [2025-09-00; online 2025-06-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Metabolic analysis of sarcopenic muscle identifies positive modulators of longevity and healthspan in C. elegans.
Jonk SM, Nicol A, Chrysostomou V, ..., Swoboda P, Williams PA
Redox Biol 85 (-) 103732 [2025-09-00; online 2025-06-14]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Lineage-specific targets of positive selection in three leaf beetles correspond with defence capacity against their shared parasitoid wasp.
Yang X, Tunström K, Slotte T, Wheat CW, Hambäck PA
Heredity (Edinb) 134 (9) 567-575 [2025-09-00; online 2025-09-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
LIGHT/TNFSF14 Levels in Carotid Plaques Are Associated With Symptomatic Cerebrovascular Disease.
Gonçalves I, Sun J, Singh P, ..., Edsfeldt A, Shami A
J Stroke 27 (3) 381-389 [2025-09-00; online 2025-09-29]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Induced somatic mutation accumulation during skeletal muscle regeneration reduces muscle strength.
Vrtačnik P, Merino LG, Subhash S, ..., Revêchon G, Eriksson M
Nat Aging 5 (9) 1739-1749 [2025-09-00; online 2025-08-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
In-depth patient-specific analysis of tumor heterogeneity in melanoma brain metastasis: Insights from spatial transcriptomics and multi-region bulk sequencing.
Sharma N, Rájová J, Mermelekas G, ..., Pernemalm M, Eriksson H
Transl Oncol 59 (-) 102468 [2025-09-00; online 2025-07-15]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Gone With the Wind: Exploring a Vanished Rock Dove, Columba livia, Hybrid Zone in the Sahara Desert.
Hernández-Alonso G, van Grouw H, Farahani MF, Günther T
Ecol Evol 15 (9) e72061 [2025-09-00; online 2025-08-27]
Ancient DNA [Service] Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution.
Zervakis PI, Postel Z, Losvik A, ..., Churcher A, Slotte T
New Phytol. 247 (6) 2964-2981 [2025-09-00; online 2025-07-18]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic determinants of therapy response in ETV6::RUNX1 leukemia.
Oksa L, Moisio S, Maqbool K, ..., Lohi O, Heinäniemi M
Leukemia 39 (9) 2125-2139 [2025-09-00; online 2025-07-09]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic and morphological analysis reveals long-term mammoth hybridization in British Columbia, Canada.
Dehasque M, van der Valk T, Chacón-Duque JC, ..., Lister A, Dalén L
Biol. Lett. 21 (9) 20250305 [2025-09-00; online 2025-09-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Fungal guild interactions slow decomposition of boreal forest pine litter and humus.
Mielke LA, Klein J, Ekblad A, ..., Lindahl BD, Clemmensen KE
New Phytol. 247 (5) 2367-2380 [2025-09-00; online 2025-06-24]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Fungal and arbuscular mycorrhizal communities unique to old grasslands in a Swedish agricultural landscape
Castaño C, Glimskär A, Hallin S, ..., Taylor A, Clemmensen KE
Applied Soil Ecology 213 (-) 106233 [2025-09-00; online 2025-09-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Evaluation of TRPA1 as a Therapeutic Target in MYCN-Amplified Neuroblastoma.
Seger A, Adamič D, Olmos EM, ..., Aaltonen K, Bexell D
Pediatr Blood Cancer 72 (9) e31875 [2025-09-00; online 2025-06-24]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Disease-specific U1 spliceosomal RNA mutations in mature B-cell neoplasms.
Nadeu F, Shuai S, Clot G, ..., Puente XS, Campo E
Leukemia 39 (9) 2076-2086 [2025-09-00; online 2025-06-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Different plasma biomarker patterns associated with coronary atherosclerosis in low- versus high-risk individuals - an observational cross-sectional study.
Cederström S, Wang Y, Lundman P, ..., Tornvall P, Jernberg T
Atherosclerosis 408 (-) 120457 [2025-09-00; online 2025-07-18]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Differences in inflammation biomarkers between patients with paroxysmal and persistent atrial fibrillation in the femoral vein and coronary sinus blood samples; a cohort study.
Valera Soria C, Carlhäll CJ, Karlsson LO, ..., Hijazi Z, Charitakis E
Eur Heart J Open 5 (5) oeaf089 [2025-09-00; online 2025-07-15]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Data-Driven Cluster Analysis of Cerebrospinal Fluid Proteome and Associations with Clinical Phenotypes in Systemic Lupus Erythematosus.
Grenmyr E, Zervides K, Najibi SM, ..., Jönsen A, Bengtsson AA
ACR Open Rheumatol 7 (9) e70089 [2025-09-00; online 2025-08-30]
Clinical Proteomics Lund [Service]
PubMed DOI Crossref
Combinations of BMI and metabolic syndrome and the risk of myocardial infarction, stroke, and heart failure.
Lind L, Risérus U, Elmståhl S, ..., Michaëlsson K, Titova OE
Nutr Metab Cardiovasc Dis 35 (9) 104102 [2025-09-00; online 2025-04-25]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Classification of Paediatric Celiac Disease Using RNA Sequencing and Real-Time PCR of Duodenal Biomarkers.
Bragde HG, Almer S, Söderman J
J. Cell. Mol. Med. 29 (18) e70854 [2025-09-00; online 2025-09-22]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Circulating protein biomarkers and their association with vulnerable plaque characteristics - a PROSPECT II substudy.
Sharma T, Maehara A, Maeng M, ..., Stone GW, Erlinge D
Int J Cardiol Cardiovasc Risk Prev 26 (-) 200440 [2025-09-00; online 2025-05-24]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Applying Deep Learning to Quantify Drivers of Long-Term Ecological Change in a Swedish Marine Protected Area.
Nilsson CL, Faurby S, Burman E, Germishuys J, Obst M
Ecol Evol 15 (9) e72091 [2025-09-00; online 2025-09-02]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Among-individual asynchrony but not genetic diversity is associated with temporal stability of tree growth in natural Quercus robur oak stands.
Hall M, Sunde J, Franzén M, Forsman A
Biol. Lett. 21 (9) 20250180 [2025-09-00; online 2025-09-10]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A novel PML germline variant as a candidate predisposing genetic aberration in familial acute myeloid leukaemia.
Soussi T, Kundu S, Gerbaud P, ..., Sjöblom T, Baliakas P
Br. J. Haematol. 207 (3) 1118-1121 [2025-09-00; online 2025-07-07]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
A Unique Plasma Protein Signature Characterizes Squamous Cell Carcinoma of the Oral Tongue in Young Adults.
Gu X, Coates PJ, Wang L, ..., Magan M, Nylander K
J. Oral Pathol. Med. 54 (8) 706-714 [2025-09-00; online 2025-08-06]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Plasma proteomics in septic shock and alcohol-related pancreatitis: a hyaluronan-centered approach.
van der Heijden J, Mazubane A, Sallisalmi M, ..., Tenhunen J, Barrueta Tenhunen A
Clin Proteomics 22 (1) 31 [2025-08-30; online 2025-08-30]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Comparative Study of the Mitochondrial Proteome From Mesophyll, Vascular, and Guard Cells in Response to Carbon Starvation.
Boussardon C, Hussain S, Keech O
Physiol Plantarum 177 (5) e70465 [2025-08-30; online 2025-08-30]
Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
A plasma protein profile of antidepressant response to omega-3 fatty acids.
Lindahl J, Stiernborg M, Ventorp F, ..., Lavebratt C, Lindqvist D
Prog. Neuropsychopharmacol. Biol. Psychiatry 141 (-) 111481 [2025-08-30; online 2025-08-27]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Whole genome transcriptional analysis of intestinal biopsies and blood cells indicate genes involved in antioxidant defense systems, amino acid metabolism and antigen presentation in the pathogenesis of celiac disease.
Torinsson Naluai Å, Sabbag S, Abrahamsson S, ..., Arnell H, Agardh D
BMC Med 23 (1) 507 [2025-08-29; online 2025-08-29]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Structure of the complete 14-subunit botulinum neurotoxin B complex reveals a unique anchoring through the narrow central pore of HA70.
Krč A, Košenina SP, Nowakowska MB, Masuyer G, Stenmark P
Sci Adv 11 (35) eadx5058 [2025-08-29; online 2025-08-27]
Cryo-EM [Service]
DOI Crossref
An Anti‐Myd88 Peptide Synergistically Enhances the Anti‐Inflammatory Effects of Extracellular Vesicles from Naïve Umbilical Cord MSC or HEK293F CD24 Overexpressing Cells
Abas Bİ, Bergqvist M, Yu L, ..., Park K, Lötvall J
Adv Materials Inter - (-) - [2025-08-29; online 2025-08-29]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
Structural and biochemical basis for activity of Aspergillus nidulans α-1,3-glucanases from glycoside hydrolase family 71
Mazurkewich S, Widén T, Karlsson H, ..., Brändén G, Larsbrink J
Commun Biol 8 (1) - [2025-08-28; online 2025-08-28]
Swedish NMR Centre [Service]
DOI Crossref
Morphological cell profiling for drug repurposing against SARS-CoV-2 infection
Asp E, Rietdijk J, Tampere M, ..., Spjuth O, Östling P
- - (-) - [2025-08-28; online 2025-08-28]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
De novo transcriptome assembly and annotation of the common freshwater amphipod (Gammarus pulex) a valuable resource for ecotoxicogenomics.
Escobar-Sierra C, Hassan S, Weichert FG, ..., Backhaus T, Inostroza PA
Sci Data 12 (1) 1502 [2025-08-28; online 2025-08-28]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Spatial TCR clonality and clonal expansion in the in situ microenvironment of non-small cell lung cancer.
Yu H, Magoulopoulou A, Amini RM, ..., Strell C, Micke P
J Immunother Cancer 13 (8) - [2025-08-27; online 2025-08-27]
In Situ Sequencing [Collaborative]
PubMed DOI Crossref
SMAD3 and p300 complex scaffolding by long non-coding RNA LIMD1-AS1 promotes TGF-β-induced breast cancer cell plasticity.
Fan C, Cats D, Selle M, ..., Ten Dijke P, Wang Q
Nucleic Acids Res. 53 (16) - [2025-08-27; online 2025-09-01]
CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome.
Zgadzay Y, Mirabello C, Wanes G, ..., Gahura O, Amunts A
Structure - (-) - [2025-08-27; online 2025-08-27]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Combinatorial DNMTs and EZH2 inhibition reprograms the H3K27me3 and DNAme-mediated onco-epigenome to suppress multiple myeloma proliferation.
Atienza Párraga A, Nylund P, Diamanti K, ..., Jernberg Wiklund H, Kalushkova A
Sci Rep 15 (1) 31568 [2025-08-27; online 2025-08-27]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chromogranin A and catestatin regulate pancreatic islet homeostasis, endocrine function, and neurotransmitter signaling.
Muntjewerff EM, Epremidze D, Nezhyva M, ..., Mahata SK, Christoffersson G
bioRxiv - (-) - [2025-08-27; online 2025-08-27]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Short and long-term effects on the thyroid proteome after 131I exposure.
Björk KI, Langen B, Schroff A, ..., Spetz J, Forssell-Aronsson E
Radiat Prot Dosimetry 201 (13-14) 919-933 [2025-08-26; online 2025-08-30]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Early proteomic response in thyroid gland after 131I administration in female Balb/c mice.
Rudqvist N, Spetz J, Schüler E, ..., Helou K, Forssell-Aronsson E
Radiat Prot Dosimetry 201 (13-14) 887-898 [2025-08-26; online 2025-08-28]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Decoupling processability of callose enriched aspen wood: the study of extractability of lignin and carbohydrates during autohydrolysis and kraft pulping
Kozlowski AM, Bourdon M, Helariutta Y, Hasani M
- 79 (8) 359-371 [2025-08-26; online 2025-06-16]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Biomarkers in the Newborn with Fetal Growth Retardation and Early Impairment of Heart Function.
Änghagen O, Engvall J, Gottvall T, ..., Ärnlöv J, Bang P
Horm Res Paediatr - (-) 1-12 [2025-08-26; online 2025-08-26]
Affinity Proteomics Stockholm [Service]
DOI Crossref
Chemical mechanism of allosteric and asymmetric dark reversion in a bacterial phytochrome uncovered by cryo-EM.
Bodizs SA, Fischer ALM, Cervenak M, ..., Maj M, Westenhoff S
- - (-) - [2025-08-24; online 2025-08-24]
Cryo-EM [Service]
PubMed DOI Crossref
Wood-specific modification of glucuronoxylan can enhance growth in Populus.
Urbancsok J, Donev EN, Derba-Maceluch M, ..., Scheepers G, Mellerowicz EJ
J. Exp. Bot. - (-) - [2025-08-23; online 2025-08-23]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
MALNC: a new mutant NPM1/IDH2R140 and PML-RARA-associated lncRNA with impact on AML cell proliferation, maturation and drug response.
Cozzi E, Neddermeyer A, Zhong X, ..., Lennartsson A, Lehmann S
Cancer Gene Ther - (-) - [2025-08-23; online 2025-08-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Brain-region-specific lipid dysregulation in L-DOPA-induced dyskinesia in a primate model of Parkinson's disease.
Kaya I, Vallianatou T, Nilsson A, ..., Bezard E, Andrén PE
NPJ Parkinsons Dis 11 (1) 258 [2025-08-23; online 2025-08-23]
Spatial Mass Spectrometry [Technology development]
PubMed DOI Crossref
Machine learning framework for investigating nano- and micro-scale particle diffusion in colonic mucus.
Tjakra M, Lidayová K, Avenel C, Bergström CAS, Hossain S
J Nanobiotechnology 23 (1) 583 [2025-08-22; online 2025-08-22]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative] Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Lipid-facilitated opening of the ADAM10 sheddase revealed by enhanced sampling simulations
Schahl A, Haloi N, Carroni M, ..., Delemotte L, Howard RJ
- - (-) - [2025-08-22; online 2025-08-22]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Diverse oncogenes use common mechanisms to drive growth of major forms of human cancer.
Kauko O, Turunen M, Pihlajamaa P, ..., Hautaniemi S, Taipale J
Sci Adv 11 (34) eadt1798 [2025-08-22; online 2025-08-20]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
An encompassing Mendelian randomization study of the causes and consequences of major depressive disorder.
Pasman JA, Bergstedt J, Harder A, ..., Sullivan PF, Lu Y
Nat Ment Health 3 (9) 1002-1011 [2025-08-22; online 2025-08-22]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Environmental and Inflammatory Factors Drive Perinuclear-Antineutrophil Cytoplasmic Antibodies (pANCA) in Ulcerative Colitis: A European Twin Study.
Bergemalm D, Amcoff K, Pierik MJ, ..., Carlson M, Halfvarson J
United European Gastroenterol J - (-) - [2025-08-21; online 2025-08-21]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Discovery of tumour indicating morphological changes in benign prostate biopsies through AI.
Chelebian E, Avenel C, Järemo H, ..., Bergh A, Wählby C
Sci Rep 15 (1) 30770 [2025-08-21; online 2025-08-21]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
DOI Crossref
Smart Microscopy: Current Implementations and a Roadmap for Interoperability
Hinderling L, Heil HS, Rates A, ..., Halavatyi A, Camacho R
- - (-) - [2025-08-20; online 2025-08-20]
Integrated Microscopy Technologies Gothenburg [Technology development]
PubMed DOI Crossref
Repeated polyploidization shapes divergence in floral morphology in Lithophragma bolanderi (Saxifragaceae).
Gross K, Yazdi HP, Schlager E, ..., Thompson JN, Friberg M
Proc. Natl. Acad. Sci. U.S.A. 122 (33) e2505119122 [2025-08-19; online 2025-08-13]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Epigenetic biomarkers predict macrovascular events in individuals with type 2 diabetes.
García-Calzón S, Maguolo A, Eichelmann F, ..., Gonçalves I, Ling C
Cell Reports Medicine 6 (8) 102290 [2025-08-19; online 2025-08-07]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
An in vivo mimetic liver-lobule-chip (LLoC) for stem cell maturation, and zonation of hepatocyte-like cells on chip.
Dalsbecker P, Suominen S, Faridi MA, ..., Viiri LE, Adiels CB
Lab Chip 25 (17) 4328-4344 [2025-08-19; online 2025-08-19]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
RNA-seq analysis identifies key genes enhancing hoof strength to withstand barefoot racing in Standardbred trotters.
Schwochow D, Alameddine A, Spörndly-Nees E, ..., Niazi A, Lindgren G
BMC Genomics 26 (1) 751 [2025-08-18; online 2025-08-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Glucuronoyl Esterase Expressed in Aspen Xylem Affects γ-Ester Linkages Between Lignin and Glucuronoxylan Reducing Recalcitrance and Accelerating Growth.
Derba-Maceluch M, García Romañach L, Hedenström M, ..., Vilaplana F, Mellerowicz EJ
Plant Biotechnol. J. - (-) - [2025-08-17; online 2025-08-17]
Swedish Metabolomics Centre [Service] Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Image based subcellular mapping of the protein landscape of SARS-CoV-2 infected cells for target-centric drug repurposing.
Tampere M, H Le T, Asp E, ..., Östling P, Stadler C
Biomed Pharmacother 191 (-) 118447 [2025-08-16; online 2025-08-16]
Chemical Biology Consortium Sweden [Collaborative] Spatial Proteomics [Collaborative]
PubMed DOI Crossref
Body weight reduction by increased weight loading in mice is associated with sensory signaling in the dorsal horn of the lumbar spinal cord.
Anesten F, Zlatkovic J, Ohlsson C, ..., Hägg D, Jansson JO
Neuroscience 581 (-) 157-163 [2025-08-16; online 2025-07-09]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Setting up mother-infant pair lactation studies with biobanking for research according to regulatory requirements.
Hansson M, Björkgren I, Svedenkrans J, ..., Baranczewski P, Shaughnessy L
Br J Clin Pharmacol - (-) - [2025-08-15; online 2025-08-15]
Drug Discovery and Development [Collaborative]
PubMed DOI Crossref
Early germline sequestration in a basidiomycete fungus.
Thorén MH, Olsson B, Vonk PJ, ..., Ryberg M, Johannesson H
Science 389 (6761) 720-723 [2025-08-14; online 2025-08-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Systems analysis of clinical malaria reveals proteomic perturbation and innate-adaptive crosstalk linked to disease severity.
Lautenbach MJ, Wyss K, Yman V, ..., Sundling C, Färnert A
Immunity 58 (8) 2120-2136.e5 [2025-08-12; online 2025-07-14]
Affinity Proteomics Stockholm [Service] Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Epigenetic control of topoisomerase 1 activity presents a cancer vulnerability.
Lee TH, Qiao CX, Kuzin V, ..., Baranello L, Oberdoerffer P
Nat Commun 16 (1) 7458 [2025-08-12; online 2025-08-12]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Unraveling Nitrogen Uptake and Metabolism: Gene Families, Expression Dynamics, and Functional Insights in Aspen (Populus tremula).
Zhang Y, Choudhary S, Renström A, ..., Robinson KM, Tuominen H
Tree Physiol - (-) - [2025-08-11; online 2025-08-11]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Significant Interplay Between Lipids, Cytokines, Chemokines, Growth Factors, and Blood Cells in an Outpatient Cohort.
Eriksson MB, Eriksson LB, Larsson AO
Int J Mol Sci 26 (16) - [2025-08-11; online 2025-08-11]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Lrig3-deficient mice exhibit strain-specific alterations in liver fat accumulation, intestinal morphology, and middle ear inflammation.
Herdenberg C, Henriksson R, Hedman H, Rondahl V
Gene 960 (-) 149539 [2025-08-10; online 2025-05-02]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ribosome biogenesis in plants requires the nuclear envelope and mitochondria localized OPENER complex.
Wang W, Mahboubi A, Zhu S, ..., Mateus A, Niittylä T
Nat Commun 16 (1) 7301 [2025-08-07; online 2025-08-07]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Inflammation-profiling reveals activated pathways and biomarkers with predictive potential in oligoarticular juvenile idiopathic arthritis.
Wen X, Aulin C, Sundberg E, ..., Altman M, Harris HE
Front Immunol 16 (-) 1599747 [2025-08-07; online 2025-08-07]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Implementing a Nordic-Baltic Federated Health Data Network: A Case Report.
Chomutare T, Barbic A, Peltonen LM, ..., Brunak S, Dalianis H
Stud Health Technol Inform 329 (-) 1241-1245 [2025-08-07; online 2025-08-08]
AIDA Data Hub [Service]
PubMed DOI Crossref
Insulin resistance as a potential driving force of parental obesity-induced adverse metabolic programming mechanisms in children with obesity.
Jurado-Sumariva L, González-Domínguez Á, Savolainen O, ..., Landberg R, González-Domínguez R
BMC Med 23 (1) 458 [2025-08-05; online 2025-08-05]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Precise mapping of single-stranded DNA breaks by sequence-templated erroneous DNA polymerase end-labelling.
Wenson L, Heldin J, Martin M, ..., Spjuth O, Söderberg O
Nat Commun 16 (1) 7130 [2025-08-04; online 2025-08-04]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Inflammatory imbalance and activation deficits in T cells of myasthenia gravis patients revealed by proteomic profiling.
Bhandage AK, Punga AR
Front Immunol 16 (-) 1648020 [2025-08-04; online 2025-08-04]
Affinity Proteomics Uppsala [Service]
DOI Crossref
Temporal genomic change in the Scandinavian Arctic fox (Vulpes lagopus)
von Seth J, Larsson P, Hasselgren M, ..., Norén K, Dalén L
- 204 (4) - [2025-08-01; online 2025-08-07]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Genomic and secretomic analyses of Blastobotrys yeasts reveal key xylanases for biomass decomposition.
Ravn J, Ristinmaa AS, Mazurkewich S, ..., Larsbrink J, Geijer C
Appl. Microbiol. Biotechnol. 109 (1) 175 [2025-08-01; online 2025-08-01]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The role of metabolism in shaping enzyme structures over 400 million years.
Lemke O, Heineike BM, Viknander S, ..., Zelezniak A, Ralser M
Nature 644 (8075) 280-289 [2025-08-00; online 2025-07-09]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
System-wide targeted analysis of oxylipins and lipoproteins in chronic peripheral neuropathic pain-an explorative study.
Jönsson M, Bäckryd E, Ljunggren S, ..., Wheelock CE, Ghafouri B
Pain Rep 10 (4) e1305 [2025-08-00; online 2025-07-02]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Sublytic Activity of a Pore-Forming Protein From Commensal Bacteria Causes Epigenetic Modulation of Tumour-Affiliated Protein Expression.
Toh E, Baryalai P, Nadeem A, ..., Uhlin BE, Wai SN
J Extracell Vesicles 14 (8) e70149 [2025-08-00; online 2025-08-19]
Cryo-EM [Service]
PubMed DOI Crossref
Structure, assembly and inhibition of the Toxoplasma gondii respiratory chain supercomplex.
MacLean AE, Shikha S, Ferreira Silva M, ..., Sheiner L, Mühleip A
Nat. Struct. Mol. Biol. 32 (8) 1424-1433 [2025-08-00; online 2025-05-19]
Cryo-EM [Service]
DOI Crossref
Small‐scale thermal habitat variability may not determine seagrass resilience to climate change
Hattich GSI, Jahnke M, Enge S, ..., Havenhand JN, Pansch C
Limnol Oceanogr 70 (8) 2039-2052 [2025-08-00; online 2025-06-06]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Optimization of the Isolation Method for Large‐Scale Production of Synthetic Bacterial Vesicles for Cancer Immunotherapy
Ordouzadeh N, Crescitelli R, Zimmer A, ..., Lötvall J, Park K
Advanced Therapeutics 8 (8) - [2025-08-00; online 2025-06-26]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identification.
Brunet S, Grankvist A, Jaen-Luchoro D, ..., Mölling P, Hallbäck ET
Eur. J. Clin. Microbiol. Infect. Dis. 44 (8) 1907-1916 [2025-08-00; online 2025-05-10]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Service] Clinical Genomics Uppsala [Collaborative] Clinical Genomics Örebro [Collaborative] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
DOI Crossref
Moving towards better risk assessment for invertebrate conservation
Goodsell RM, Tack AJM, Ronquist F, ..., Roslin T, Vanhatalo J
Ecography 2025 (8) - [2025-08-00; online 2025-05-05]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Mast Cell Phenotypic Heterogeneity Impacts the Interplay with Pathogenic Salmonella Typhimurium Bacteria.
von Beek C, Prensa GI, Andersson JHM, Pejler G, Sellin ME
Eur. J. Immunol. 55 (8) e70040 [2025-08-00; online 2025-08-21]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Large-scale genome-wide analyses with proteomics integration reveal novel loci and biological insights into frailty.
Mak JKL, Qin C, Krüger M, ..., Lin J, Jylhävä J
Nat Aging 5 (8) 1589-1600 [2025-08-00; online 2025-08-05]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Landscape connectivity and genetic structure of animal populations in urban ponds
Yildirim Y, Hyseni C, Heino J, ..., Höglund J, Johansson F
Conserv Genet 26 (4) 703-714 [2025-08-00; online 2025-04-08]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genotypic and Phenotypic Characterization of Seven Individuals With Predicted Bone Morphogenetic Protein 2 (BMP2) Haploinsufficiency.
Stavrén-Eriksson E, Hammarsjö A, Lindstrand A, ..., Grigelioniene G, Pigg MH
Clin. Genet. 108 (2) 199-205 [2025-08-00; online 2025-02-19]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Genome-wide identification of modulators of Chlamydia trachomatis parasitophorous vacuole stability highlights an important role for sphingolipid supply.
Babu Sait MR, Jachmann LH, Türköz G, ..., Schmierer B, Sixt BS
PLoS Biol. 23 (8) e3003297 [2025-08-00; online 2025-08-12]
Bioinformatics Support for Computational Resources [Service] CRISPR Functional Genomics [Service] Chemical Biology Consortium Sweden [Service] Integrated Microscopy Technologies Umeå [Technology development] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetics of monozygotic twins reveals the impact of environmental sensitivity on psychiatric and neurodevelopmental phenotypes.
Assary E, Coleman JRI, Hemani G, ..., Munroe PB, Keers R
Nat Hum Behav 9 (8) 1683-1696 [2025-08-00; online 2025-06-10]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Genetic diversity and structure among Acropora austera populations in Mozambique suggest low resilience potential of one of the world’s most charismatic coral reefs
Duvane JA, Dupont S, Sola E, Ortega-Martinez O, Pereyra RT
Coral Reefs 44 (4) 1185-1195 [2025-08-00; online 2025-05-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Fatty acid biomarkers reveal landscape influences on linkages between aquatic and terrestrial food webs
Burdon FJ, Sargac J, Ramberg E, ..., Johnson RK, McKie BG
Ecological Monographs 95 (3) - [2025-08-00; online 2025-09-00]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Exploring novel genomic biomarkers for response and survival after neoadjuvant chemotherapy and radical cystectomy of muscle-invasive bladder cancer.
Holmsten K, De Laere B, Sjödahl G, ..., Liedberg F, Ullén A
ESMO Open 10 (8) 105512 [2025-08-00; online 2025-07-14]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
DOI Crossref
Effects of boreal ground layer shrubs and bryophytes on the diversity, biomass and composition of lichen communities across contrasting ecosystems
Fanin N, Asplund J, Gundale MJ, ..., Nilsson M, Wardle DA
Oikos 2025 (8) - [2025-08-00; online 2025-04-04]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Ectomycorrhizal decomposers and their niche(s) in boreal forests
Packard EE, Pérez‐Izquierdo L, Clemmensen KE, ..., Stendahl J, Lindahl BD
Functional Ecology 39 (8) 1998-2014 [2025-08-00; online 2025-06-12]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Diplodia tip blight (Diplodia sapinea) and site conditions shape Scots pine (Pinus sylvestris) endophytic mycobiome
Brodde L, Miñana-Posada S, Tudoran A, ..., Oliva J, Stenlid J
Forest Ecology and Management 589 (-) 122781 [2025-08-00; online 2025-08-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Deep sequencing combined with high-throughput screening enables efficient development of a pH-dependent high-affinity binding domain targeting HER3.
Möller M, Jönsson M, Lundqvist M, ..., Tegel H, Hober S
Protein Sci. 34 (8) e70247 [2025-08-00; online 2025-07-29]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Complex relationship between soil fungi and conservation value assessments in boreal forests.
Kyaschenko J, Mielke L, Jönsson M, ..., Clemmensen KE, Strengbom J
Conservation Biology 39 (4) e70012 [2025-08-00; online 2025-03-12]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Clinical whole genome sequencing in pediatric epilepsy: Genetic and phenotypic spectrum of 733 individuals.
Henry OJ, Ygberg S, Barbaro M, ..., Stödberg T, Wedell A
Epilepsia 66 (8) 2966-2979 [2025-08-00; online 2025-04-04]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
DOI Crossref
Carbonation of quicklimes during cooling in moderate and high CO2 atmospheres
Ma C, Eriksson M, Wilhelmsson B, Wendel M, Broström M
Thermochimica Acta 750 (-) 180022 [2025-08-00; online 2025-08-00]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Cafestol and kahweol concentrations in workplace machine coffee compared with conventional brewing methods.
Orrje E, Fristedt R, Rosqvist F, Landberg R, Iggman D
Nutr Metab Cardiovasc Dis 35 (8) 103933 [2025-08-00; online 2025-02-20]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
DOI Crossref
Assessing Sperm Quality Parameters in Mass‐Spawning Norwegian Arctic Charr
Kurta K, Beirão J, Thomason B, Palaiokostas C
Aquaculture Fish & Fisheries 5 (4) - [2025-08-00; online 2025-08-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
An east–west distribution of genetic diversity in Nordic populations of caraway (Carum carvi L.) and its consequences for conservation prioritisation
de Haro Reyes B, Palmé A, Fitzgerald H, ..., Treier UA, Hagenblad J
Conserv Genet 26 (4) 771-785 [2025-08-00; online 2025-05-06]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Adaptations for stealth in the wing-like flippers of a large ichthyosaur.
Lindgren J, Lomax DR, Szász RZ, ..., Persson P, Nilsson DE
Nature 644 (8078) 976-983 [2025-08-00; online 2025-07-16]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Profiling of the microRNA transcriptome in feline whole blood.
Ohlsson Å, Hanås S, Holst BS, ..., Ljungvall I, Häggström J
Sci Rep 15 (1) 27962 [2025-07-31; online 2025-07-31]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
X-ray computed tomography-based qualitative analysis of internal resinwood in Scots pine
Joevenller S, Huber JAJ, Svennerstam H, Nysjö F, Karlsson O
Wood Material Science & Engineering - (-) 1-12 [2025-07-30; online 2025-07-30]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
Thioredoxin Reductase 1 inhibition triggers ferroptosis in KRAS-independent lung cancers.
Andreani C, Bartolacci C, Melegari M, ..., Galassi R, Scaglioni PP
bioRxiv - (-) - [2025-07-30; online 2025-07-30]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
Single-Entity Resolution Single-Cell Nanosensor Reveals Reactive Oxygen Species at Stress Granules Are Formed by Interfacial Redox Chemistry.
Gu H, Gu C, Du Toit A, ..., Dai Y, Ewing AG
J. Am. Chem. Soc. 147 (30) 27020-27029 [2025-07-30; online 2025-07-21]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Sex-Biased Gene Expression Under Sexually Antagonistic and Sex-Limited Selection.
Wiberg RAW, Zwoinska MK, Kaufmann P, Howie JM, Immonen E
Mol. Biol. Evol. 42 (8) - [2025-07-30; online 2025-07-29]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cytokines, chemokines and antibodies against histone-3/4 citrullinated peptides in rheumatoid arthritis patients with pulmonary fibrosis.
Johansson L, Pratesi F, Errante F, ..., Migliorini P, Rantapää-Dahlqvist S
Arthritis Res. Ther. 27 (1) 160 [2025-07-30; online 2025-07-30]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Disease activity and treatment response in early rheumatoid arthritis: an exploratory metabolomic profiling in the NORD-STAR cohort.
Fatima T, Zhang Y, Vasileiadis GK, ..., Rudin A, Maglio C
Arthritis Res. Ther. 27 (1) 156 [2025-07-26; online 2025-07-26]
Swedish Metabolomics Centre [Service]
DOI Crossref
Topical MTH1 Inhibition Suppresses SKP2-WNT5a-Driven Psoriatic Hyperproliferation
Bivik Eding C, Köhler I, Moparthi L, ..., Warpman Berglund U, Enerbäck C
Int J Mol Sci 26 (15) 7174 [2025-07-25; online 2025-07-25]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
DOI Crossref
The 3D genome of pediatric B-cell precursor acute lymphoblastic leukemia
Moura-Castro LH, Aydın E, Telliam Dushime G, ..., Yang M, Paulsson K
- - (-) - [2025-07-25; online 2025-07-25]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Incentivising cooperation by judging a group's performance by its weakest member in neuroevolution and reinforcement learning.
Schossau J, Shirmohammadi B, Hintze A
Front Robot AI 12 (-) 1599676 [2025-07-25; online 2025-07-25]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads.
Petri AJ, Thi-Huyen Nguyen M, Rajwar A, Benson E, Sahlin K
PLoS ONE 20 (7) e0321246 [2025-07-24; online 2025-07-24]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Transcription of GABAA receptor subunits in circulating monocytes and association to emotional brain function in premenstrual dysphoric disorder.
Stiernman L, Comasco E, Johansson M, Bixo M
Transl Psychiatry 15 (1) 255 [2025-07-23; online 2025-07-23]
Clinical Genomics [Service] Clinical Genomics Umeå [Service]
PubMed DOI Crossref
Predicting immune responsiveness in ER-positive breast cancer for personalized therapy: a population-based study.
Stenmark Tullberg A, Woxlin S, Sjölin F, ..., Holmberg E, Karlsson P
NPJ Precis Oncol 9 (1) 250 [2025-07-23; online 2025-07-23]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of a small molecule targeting EPLIN as a novel strategy for the treatment of pediatric neuroblastoma and medulloblastoma.
Lindell E, Guo J, Zhao M, ..., Sjöblom T, Zhang X
Cell Death Dis 16 (1) 554 [2025-07-23; online 2025-07-23]
Chemical Proteomics [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Wide-scale geographical analysis of genetic ancestry in the South African Coloured population.
Lankheet I, Hammarén R, Alva Caballero LX, ..., de Jongh M, Schlebusch C
BMC Biol. 23 (1) 219 [2025-07-22; online 2025-07-22]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cytoskeleton-associated protein 4 affects podocyte cytoskeleton dynamics in diabetic kidney disease.
Boi R, Lassén E, Johansson A, ..., Ebefors K, Nyström J
JCI Insight 10 (14) - [2025-07-22; online 2025-06-10]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Sustainable production of exopolysaccharides from quinoa stalk hydrolysates using halotolerant Bacillus swezeyi: fermentation kinetics and product characterization
Miranda DA, Carrasco C, Romero‐Soto L, ..., Jönsson LJ, Martín C
Biofuels Bioprod Bioref - (-) - [2025-07-21; online 2025-07-21]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Parathyroidectomy Restores Muscle Strength and Transcriptome in Individuals with Primary Hyperparathyroidism.
Björnsdotter-Öberg S, Koman A, Skorpil M, ..., Pillon NJ, Nylén C
J. Clin. Endocrinol. Metab. - (-) - [2025-07-21; online 2025-07-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cross-generational genomic prediction of Norway spruce (Picea abies) wood properties: an evaluation using independent validation.
Hayatgheibi H, Hallingbäck HR, Gezan SA, ..., Kärkkäinen K, García Gil MR
BMC Genomics 26 (1) 680 [2025-07-21; online 2025-07-21]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
The invasion phenotypes of glioblastoma depend on plastic and reprogrammable cell states.
Doroszko M, Stockgard R, Uppman I, ..., Larsson I, Nelander S
Nat Commun 16 (1) 6662 [2025-07-19; online 2025-07-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Interplay between antipredator behavior, parasitism, and gut microbiome in wild stickleback populations.
Varg JE, Brealey JC, Benhaïm D, Losada-Germain R, Boughman JW
NPJ Biofilms Microbiomes 11 (1) 138 [2025-07-19; online 2025-07-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Tissue origin and virus specificity shape human CD8+ T cell cytotoxicity.
Niessl J, Müller TR, Constantz C, ..., Jorns C, Buggert M
Sci Immunol 10 (109) eadq4881 [2025-07-18; online 2025-07-18]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Sequencing airborne DNA to monitor crop pathogens and pests.
Mikko A, Villegas JA, Svensson D, ..., Berlin A, Stenberg P
iScience 28 (7) 112912 [2025-07-18; online 2025-06-16]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Programmed DNA elimination drives rapid genomic innovation in two thirds of all bird species.
Ruiz-Ruano FJ, Schlebusch SA, Vontzou N, ..., Whibley A, Suh A
bioRxiv - (-) - [2025-07-18; online 2025-07-18]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A Cyanobacterial Screening Platform for Rubisco Mutant Variants.
Hoffmann UA, Schuppe AZ, Knave A, ..., Syrén PO, Hudson EP
ACS Synth Biol 14 (7) 2619-2633 [2025-07-18; online 2025-07-07]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Small RNA in sperm-Paternal contributions to human embryo development.
Isacson S, Karlsson K, Zalavary S, ..., Liffner S, Öst A
Nat Commun 16 (1) 6571 [2025-07-17; online 2025-07-17]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
DOI Crossref
Phenotypic Screening Identifies Flunarizine as an Inhibitor of Radiotherapy-Induced Astrocyte Reactivity with Therapeutic Potential in Glioblastoma
Jeannot P, Rosberg R, Lindgren D, ..., Carragher NO, Pietras A
- - (-) - [2025-07-17; online 2025-07-17]
Clinical Genomics Lund [Service]
DOI Crossref
Dual targeting of G9a and DNMTs induces anti-tumour effects in multiple myeloma
Nylund PW, Garrido-Zabala B, Tziola SI, ..., Kalushkova A, Jernberg-Wiklund H
Blood Adv - (-) - [2025-07-17; online 2025-07-17]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Biomarkers of progressive multiple sclerosis decrease following autologous hematopoietic stem cell transplantation.
Erngren I, Lundblad K, Pavlovic I, ..., Kultima K, Burman J
J Neuroinflammation 22 (1) 186 [2025-07-17; online 2025-07-17]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Validation of Guidelines for Genetic Investigation of Myeloid Neoplasms with Germline Predisposition: Results from a Prospective Cohort Study.
Tesi B, Robelius A, Baskin B, ..., Hellström-Lindberg E, Baliakas P
Clin. Cancer Res. 31 (14) 3062-3071 [2025-07-15; online 2025-05-19]
Clinical Genomics [Collaborative] Clinical Genomics Lund [Service] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Poincare guided geometric UNet for left atrial epicardial adipose tissue segmentation in Dixon MRI images.
Firouznia M, Ylipää E, Henningsson M, Carlhäll CJ
Sci Rep 15 (1) 25549 [2025-07-15; online 2025-07-15]
AIDA Data Hub [Service]
PubMed DOI Crossref
Plasma carotenoids are inversely correlated with granulocyte counts and soluble inflammatory markers in a middle-aged population: a cross-sectional study with mediation analysis.
Neelissen J, Leanderson P, Nyström FH, Jonasson L, Chung RWS
BMC Med 23 (1) 427 [2025-07-15; online 2025-07-15]
Affinity Proteomics Stockholm [Service] Affinity Proteomics Uppsala [Service]
DOI Crossref
High-ratiO partiaL proteolysiS with carriER proteome (HOLSER) Enables Global Structure Profiling and Site-resolved Elucidation of Ligand–Protein Interactions
Zhang X, Sokolova B, Meng Z, ..., Gaetani M, Zubarev RA
- - (-) - [2025-07-15; online 2025-07-15]
Chemical Proteomics [Technology development]
PubMed DOI Crossref
Genome analyses suggest recent speciation and postglacial isolation in the Norwegian lemming.
Lord E, Feinauer IS, Soares AER, ..., Dalén L, Díez-Del-Molino D
Proc. Natl. Acad. Sci. U.S.A. 122 (28) e2424333122 [2025-07-15; online 2025-06-30]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Reverse microdialysis of sucrose stimulates soil fungal and bacterial growth at the microscale.
Schneider AN, Buckley S, Lorenzo ZC, ..., Taylor AFS, Jämtgård S
BMC Microbiol. 25 (1) 436 [2025-07-14; online 2025-07-14]
Bioinformatics Support for Computational Resources [Service] Integrated Microscopy Technologies Umeå [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cell atlas of the developing human meninges reveals a dura origin of meningioma.
Vinsland E, Salas SM, Kapustová I, ..., Lönnerberg P, Linnarsson S
bioRxiv - (-) - [2025-07-13; online 2025-07-13]
In Situ Sequencing [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Novel insights on remnant stomach following Roux-en-Y gastric bypass surgery based on histological evaluation and quantitative proteomics analysis.
Larson CIW, Fändriks L, Casselbrant A, Wallenius V
Sci Rep 15 (1) 25243 [2025-07-12; online 2025-07-12]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Spatial mapping of proteins and their activity states in cancer models by multiplex in situ PLA
Löf L, Xu B, Sinha TK, ..., Zieba-Wicher A, Landegren U
- - (-) - [2025-07-11; online 2025-07-11]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
Cross-population GWAS and proteomics improve risk prediction and reveal mechanisms in atrial fibrillation.
Yuan S, Chen J, Ruan X, ..., Damrauer SM, Larsson SC
Nat Commun 16 (1) 6426 [2025-07-11; online 2025-07-11]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Silk-Ovarioids: establishment and characterization of a human ovarian primary cell 3D-model system.
Di Nisio V, Li T, Xiao Z, ..., Damdimopoulou P, Salumets A
Hum Reprod Open 2025 (3) hoaf042 [2025-07-10; online 2025-07-10]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Intestinal estrogen receptor beta modulates the murine colon tumor immune microenvironment.
Birgersson M, Holm M, Gallardo-Dodd CJ, ..., Archer A, Williams C
Cancer Lett. 622 (-) 217661 [2025-07-10; online 2025-03-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
DNA Methylation Reflects Cis-Genetic Differentiation Across the European Crow Hybrid Zone.
Merondun J, Wolf JBW
Mol. Ecol. 34 (21) e70026 [2025-07-10; online 2025-07-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Development of Anti-Inflammatory Extracellular Vesicles by Surface Expression of Syndecan-4
Yu L, Bergqvist M, Park KS, Lässer C, Lötvall J
- - (-) - [2025-07-09; online 2025-07-09]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
The association between the gut microbiome and 24-h blood pressure measurements in the SCAPIS study.
Lin YT, Sayols-Baixeras S, Baldanzi G, ..., Orho-Melander M, Fall T
Commun Med (Lond) 5 (1) 276 [2025-07-07; online 2025-07-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Optimized Artificial Colonic Mucus Enabling Physiologically Relevant Diffusion Studies of Drugs, Particles, and Delivery Systems.
Tjakra M, Chakrapeesirisuk N, Jacobson M, ..., Teleki A, Bergström CAS
Mol. Pharm. 22 (7) 4032-4045 [2025-07-07; online 2025-06-10]
Drug Discovery and Development [Service]
DOI Crossref
Fungal diversity in wood of living trees is higher in oak than in beech, maple or linden, and is affected by tree size and climate
Nordén B, Andreasen M, Gran O, Menkis A
Biodivers Conserv - (-) - [2025-07-05; online 2025-07-05]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Discovery and characterization of novel pyridone and furan substituted ligands of choline acetyltransferase.
Baidya AT, Dante D, Das B, ..., Darreh-Shori T, Kumar R
Eur J Pharmacol 998 (-) 177638 [2025-07-05; online 2025-04-17]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Oat bran fiber protects against radiation-induced disruption of gut barrier dynamics and mucosal damage.
Patel P, Jin C, Nookaew I, ..., Sjöberg F, Bull C
NPJ Biofilms Microbiomes 11 (1) 128 [2025-07-04; online 2025-07-04]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
From Recruitment to Retirement: Research Infrastructure Staff Views on the Diversification of Scientific Career Paths at Universities in Sweden in 2024.
Schroeder K, Fernández-Rodríguez J, Jenmalm-Jensen A, ..., Stadler C, Lindvall JM
F1000Res 14 (-) 652 [2025-07-04; online 2025-07-04]
Integrated Microscopy Technologies Gothenburg [Technology development]
PubMed DOI Crossref
Droplet microfluidics-based detection of rare antibiotic-resistant subpopulations in Escherichia coli from bloodstream infections.
Agnihotri SN, Fatsis-Kavalopoulos N, Windhager J, Tenje M, Andersson DI
Sci Adv 11 (27) eadv4558 [2025-07-04; online 2025-07-04]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
DOI Crossref
Identification of proliferating neural progenitors in the adult human hippocampus
Dumitru I, Paterlini M, Zamboni M, ..., Sandberg R, Frisén J
Science 389 (6755) 58-63 [2025-07-03; online 2025-07-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Dissecting FAP+ Cell Diversity in Pancreatic Cancer Uncovers an Interferon-Response Subtype of Cancer-Associated Fibroblasts with Tumor-Restraining Properties.
Cumming J, Maneshi P, Dongre M, ..., Patthey C, Öhlund D
Cancer Res. 85 (13) 2388-2411 [2025-07-02; online 2025-04-11]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Umeå [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Bladder cancer subtypes exhibit limited plasticity across different microenvironments and in metastases.
Bernardo C, Chattopadhyay S, Andersson N, ..., Höglund M, Sjödahl G
Exp Hematol Oncol 14 (1) 91 [2025-07-02; online 2025-07-02]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Lund [Service] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Associations between carotid artery intima-media thickness, traditional risk factors and proteins
Lind L, Zheng R
npj Cardiovasc Health 2 (1) - [2025-07-02; online 2025-07-02]
Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Transcriptomic Patterns in Adult and Pediatric Patients with IgA Nephropathy or IgA Vasculitis with Nephropathy.
Levin A, Schwarz A, van Hoef V, ..., Witasp A, Wernerson A
J. Am. Soc. Nephrol. - (-) - [2025-07-01; online 2025-07-01]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
The interplay of genetics and fatty acid metabolism: exploring their impact on metabolic syndrome in Swedish men.
Oskarsdottir H, Palsson A, Olafsdottir EB, ..., Skuladottir GV, Mwinyi J
Nutr J 24 (1) 99 [2025-07-01; online 2025-07-01]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Semaglutide effects on energy balance are mediated by Adcyap1+ neurons in the dorsal vagal complex.
Teixidor-Deulofeu J, Blid Sköldheden S, Font-Gironès F, ..., Ruud J, Engström Ruud L
Cell Metab. 37 (7) 1530-1546.e6 [2025-07-01; online 2025-05-22]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Proteomic analysis of Down syndrome cerebrospinal fluid compared to late-onset and autosomal dominant Alzheimer´s disease.
Montoliu-Gaya L, Bian S, Dammer EB, ..., Fortea J, Johnson ECB
Nat Commun 16 (1) 6003 [2025-07-01; online 2025-07-01]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
NAD depletion in skeletal muscle does not compromise muscle function or accelerate aging.
Chubanava S, Karavaeva I, Ehrlich AM, ..., Deshmukh AS, Treebak JT
Cell Metab. 37 (7) 1460-1481.e17 [2025-07-01; online 2025-04-30]
Swedish Metabolomics Centre [Collaborative]
PubMed DOI Crossref
A high polygenic risk score is associated with SSA/SSB antibody positivity and early onset in primary Sjögren's disease.
Fugmann C, Reid S, Pucholt P, ..., Imgenberg-Kreuz J, Nordmark G
Rheumatology (Oxford) 64 (7) 4341-4346 [2025-07-01; online 2024-12-18]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Uncemented hip arthroplasty and denosumab: increased postoperative dipeptide concentrations and identification of potential new bone turnover biomarkers.
Kultima K, Ashtiani SH, Erngren I, ..., Mallmin H, Hailer NP
JBMR Plus 9 (7) ziaf091 [2025-07-00; online 2025-05-19]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
UYSD: a novel data repository accessible via public website for worldwide population frequencies of Y-SNP haplogroups.
Ralf A, Zandstra D, van Wersch B, ..., Schneider PM, Kayser M
Eur. J. Hum. Genet. 33 (7) 904-912 [2025-07-00; online 2025-05-08]
NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
The spatiotemporal distribution of human pathogens in ancient Eurasia.
Sikora M, Canteri E, Fernandez-Guerra A, ..., Iversen AKN, Willerslev E
Nature 643 (8073) 1011-1019 [2025-07-00; online 2025-07-09]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Systematically identification of survival-associated eQTLs in a Japanese kidney cancer cohort.
Song X, Jin H, Li X, ..., Zhang C, Mardinoglu A
PLoS Genet. 21 (7) e1011770 [2025-07-00; online 2025-07-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Stepwise ATP translocation into the endoplasmic reticulum by human SLC35B1.
Gulati A, Ahn DH, Suades A, ..., Nomura N, Drew D
Nature 643 (8072) 855-864 [2025-07-00; online 2025-05-21]
Cryo-EM [Service]
PubMed DOI Crossref
Staphylococcus aureus From Prosthetic Joint Infections and Blood Cultures Display the Same Genetic Background.
Söderquist B, Wildeman P, Stegger M, Stenmark B
APMIS 133 (7) e70038 [2025-07-00; online 2025-07-04]
Clinical Genomics [Service] Clinical Genomics Örebro [Service]
PubMed DOI Crossref
Small and Large Extracellular Vesicles From Human Preovulatory Follicular Fluid Display Distinct ncRNA Cargo Profiles and Differential Effects on KGN Granulosa Cells.
Varik I, Saretok KJ, Rosenberg K, ..., Guazzi P, Velthut-Meikas A
J Extracell Vesicles 14 (7) e70119 [2025-07-00; online 2025-07-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Significant Associations Between Blood Cell Counts and a Large Number of Salivary Cytokines, Chemokines, and Growth Factors.
Eriksson LB, Eriksson M, Gordh T, Larsson A
Journal of Interferon & Cytokine Research 45 (7) 254-262 [2025-07-00; online 2025-05-20]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
STING Agonist Drug Delivery by Bacterial Extracellular Vesicles Induces Synergistic Immuno-Oncology Responses and Efficient Inhibition of Tumour Growth.
Lötvall J, Ordouzadeh N, Crescitelli R, ..., Jin T, Park KS
J Extracell Vesicles 14 (7) e70117 [2025-07-00; online 2025-07-07]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Rescue of loss-of-function long QT syndrome-associated mutations in KV7.1/KCNE1 by the endocannabinoid N-arachidonoyl-L-serine (ARA-S).
Hiniesto-Iñigo I, Sridhar A, Louradour J, ..., Ottosson NE, Liin SI
British Journal of Pharmacology 182 (13) 2861-2877 [2025-07-00; online 2025-03-14]
Chemical Biology Consortium Sweden [Collaborative] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
DOI Crossref
Refolding of the Deinococcus Radiodurans phytochrome photosensory module and an extended backbone resonance assignment by solution NMR
Vrhovac LS, Levkovets M, Orekhov VY, Westenhoff S
Protein Expression and Purification 231 (-) 106699 [2025-07-00; online 2025-07-00]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Position-Specific Substitution in Cellulose Ethers Studied by DNP Enhanced Solid-State NMR Spectroscopy.
Karlsson H, Pinon AC, Karlson L, ..., Schantz S, Evenäs L
Magn Reson Chem 63 (8) 560-568 [2025-07-00; online 2025-05-22]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Plasma metabolite profiles of meat intake and their association with cardiovascular disease risk: A population-based study in Swedish cohorts.
Arage G, Dekkers KF, Rašo LM, ..., Fall T, Ahmad S
Metabolism 168 (-) 156188 [2025-07-00; online 2025-03-11]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Music style preferences and well-being: A genetic perspective
Bratchenko A, Xia P, Boomsma DI, ..., Ullén F, Wesseldijk LW
Personality and Individual Differences 241 (-) 113162 [2025-07-00; online 2025-07-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Museomics unravels cryptic diversity in an endemic group of New Guinean songbirds.
Blom MPK, Bloom-Quinn S, Marki PZ, ..., Irestedt M, Jønsson KA
Biol. Lett. 21 (7) 20240611 [2025-07-00; online 2025-07-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Idiopathic inflammatory myopathies lack neutralising autoantibodies to type- I, II and III interferons
Behere A, Mildner H, Peralta Garcia I, ..., Horuluoglu B, Landegren N
RMD Open 11 (3) e005836 [2025-07-00; online 2025-09-25]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Gut microbiota mediates SREBP-1c-driven hepatic lipogenesis and steatosis in response to zero-fat high-sucrose diet.
Bergentall M, Tremaroli V, Sun C, ..., Nieuwdorp M, Bäckhed F
Mol Metab 97 (-) 102162 [2025-07-00; online 2025-05-07]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genome-centric metagenomics reveals the effect of organic carbon source on one-stage partial denitrification-anammox in biofilm reactors.
Zheng Z, Gustavsson DJI, Zheng D, ..., Modin O, Persson F
J Environ Manage 388 (-) 125972 [2025-07-00; online 2025-05-30]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Genome-Wide Adaptation to a Complex Environmental Gradient in a Keystone Phytoplankton Species.
Pinseel E, Ruck EC, Nakov T, ..., Hahn MW, Alverson AJ
Mol. Ecol. 34 (13) e17817 [2025-07-00; online 2025-06-10]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
Söderquist L, Joffard N, Scofield DG, ..., Karrenberg S, Sletvold N
Ecography 2025 (7) - [2025-07-00; online 2025-03-19]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic markers associated with bone strength and density in Rhode Island Red laying hens.
Yue Q, Johnsson M, Wilson PW, ..., Dunn IC, de Koning DJ
Poult. Sci. 104 (7) 105246 [2025-07-00; online 2025-05-02]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic and Environmental Effects on Parent-Rated Adaptive Behaviour in Infancy.
Halkola H, Viktorsson C, Jones EJH, ..., Falck-Ytter T, Bussu G
Dev Sci 28 (4) e70041 [2025-07-00; online 2025-06-20]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ex vivo drug responses and molecular profiles of 597 pediatric acute lymphoblastic leukemia patients.
Enblad AP, Krali O, Gezelius H, ..., Lönnerholm G, Nordlund J
Hemasphere 9 (7) e70176 [2025-07-00; online 2025-07-28]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Evaluating IL1RA-Autoantibodies Across SARS-CoV-2-Related Diseases.
Behere A, Hallberg P, Cederholm A, ..., Brodin P, Landegren N
Scand. J. Immunol. 102 (1) e70039 [2025-07-00; online 2025-06-25]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Chemical exposomics in biobanked plasma samples and associations with breast cancer risk factors
Edlund J, Sdougkou K, Papazian S, ..., Martin JW, Harlid S
J Expo Sci Environ Epidemiol 35 (4) 567-577 [2025-07-00; online 2024-12-06]
Exposomics [Collaborative]
PubMed DOI Crossref
Angiopoietin-TIE2 feedforward circuit promotes PIK3CA-driven venous malformations.
Kraft M, Schoofs H, Petkova M, ..., Potente M, Mäkinen T
Nat Cardiovasc Res 4 (7) 801-820 [2025-07-00; online 2025-05-23]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
DOI Crossref
Pretreatment with estrogen enhances the therapeutic efficacy of cardiac progenitor cells and improves cardiac recovery in a failing heart model
Aydos D, Basak N, Olgar Y, ..., Sezgin E, Bitirim CV
- - (-) - [2025-06-28; online 2025-06-28]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Mosaic loss of chromosome Y in blood is associated with male susceptibility for idiopathic pulmonary fibrosis.
Bjurling J, Chavkin NW, Halvardson J, ..., Walsh K, Forsberg LA
Commun Med (Lond) 5 (1) 246 [2025-06-28; online 2025-06-28]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Out-of-Anatolia: Cultural and genetic interactions during the Neolithic expansion in the Aegean.
Koptekin D, Aydoğan A, Karamurat C, ..., Özer F, Somel M
Science 388 (6754) eadr3326 [2025-06-26; online 2025-06-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Doublet decoding of tRNASer3 demonstrates plasticity of ribosomal decoding center.
Krishnaswamy S, Akbar S, Larsson DSD, Chen Y, Selmer M
Nat Commun 16 (1) 5402 [2025-06-26; online 2025-06-26]
Cryo-EM [Service]
PubMed DOI Crossref
Unveiling the Structure of Anhydrous Sodium Valproate with 3D Electron Diffraction and a Facile Sample Preparation Workflow.
Xu J, Srinivas V, Kumar R, ..., Zou X, Xu H
ACS Cent Sci 11 (6) 960-966 [2025-06-25; online 2025-05-21]
Cryo-EM [Service]
PubMed DOI Crossref
The mitochondrial methylation potential gates mitoribosome assembly.
Glasgow RIC, Singh V, Peña-Pérez L, ..., Amunts A, Wredenberg A
Nat Commun 16 (1) 5388 [2025-06-25; online 2025-06-25]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
BMI during childhood and puberty - associations with blood pressure and hypertension.
Lilja L, Bygdell M, Martikainen J, ..., Ohlsson C, Kindblom JM
Eur J Prev Cardiol - (-) - [2025-06-25; online 2025-06-25]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Combined targeting of PRDX6 and GSTP1 as a potential differentiation strategy for neuroblastoma treatment.
Liaño-Pons J, Garde-Lapido E, Fahrig FL, ..., Bedoya-Reina OC, Arsenian-Henriksson M
Proc. Natl. Acad. Sci. U.S.A. 122 (25) e2427211122 [2025-06-24; online 2025-06-18]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Development of empirical anti-inflammatory diet index: a cross-sectional study.
Kaluza J, Hellerström L, Kaluza D, ..., Michaëlsson K, Wolk A
Nutr J 24 (1) 97 [2025-06-23; online 2025-06-23]
Affinity Proteomics Uppsala [Service]
DOI Crossref
Scalable single-cell metagenomic analysis with Bascet and Zorn
Gourlé H, Yakovenko I, Verma J, ..., Carroll LM, Henriksson J
- - (-) - [2025-06-21; online 2025-06-21]
Clinical Genomics [Service] Clinical Genomics Umeå [Service]
PubMed DOI Crossref
Real-time genome imaging of host interactions in adeno-associated virus genome release.
Bustamante-Jaramillo LF, Yue L, Fingal J, ..., Blondot ML, Kann M
iScience 28 (6) 112624 [2025-06-20; online 2025-05-08]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Diagnostic yield of 1000 trio analyses with exome and genome sequencing in a clinical setting.
Malmgren H, Kvarnung M, Gustafsson P, ..., Lindstrand A, Lagerstedt-Robinson K
Front Genet 16 (-) 1580879 [2025-06-20; online 2025-06-20]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Cerebrospinal fluid protein profiling of inflammatory and neurobiological markers in Lyme neuroborreliosis.
Haglund S, Gyllemark P, Forsberg P, ..., Tjernberg I, Henningsson AJ
Sci Rep 15 (1) 20190 [2025-06-20; online 2025-06-20]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Catalytic-dependent and independent functions of the histone acetyltransferase CBP promote pioneer-factor-mediated zygotic genome activation.
Marsh AJ, Pirogov S, Kaur Y, ..., Harrison MM, Mannervik M
Mol. Cell 85 (12) 2409-2424.e8 [2025-06-19; online 2025-05-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
A cell-based degrader assessment platform facilitates discovery of functional NUDT5 PROTACs
Alam S, Pires MJ, Tidestav G, ..., Valerie NCK, Altun M
- - (-) - [2025-06-19; online 2025-06-19]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
A Combined Model-Based Meta-Analysis of Aggregated and Individual FEV1 Data From Randomized COPD Trials.
Yang L, Llanos-Paez C, Yang S, ..., Kjellsson MC, Karlsson MO
CPT Pharmacometrics Syst Pharmacol - (-) - [2025-06-19; online 2025-06-19]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
The plasma proteome reveals distinct signaling pathways associated with PR3-ANCA positive and MPO-ANCA positive vasculitis.
Hellbacher E, van Hoef V, Johansson A, ..., Rantapää-Dahlqvist S, Dahlqvist J
Front Immunol 16 (-) 1600754 [2025-06-18; online 2025-06-18]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Advanced Microbiome Therapeutics Accelerate MASLD Recovery by Restoring Intestinal Microbiota Equilibrium and the Gut-Liver Axis in a Mouse Model.
Lok J, Chen C, Iannone V, ..., El-Nezami H, Gómez-Gallego C
J. Agric. Food Chem. 73 (24) 15199-15214 [2025-06-18; online 2025-06-06]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Microbial transfer through fecal strings on eggs affects leaf beetle microbiome dynamics.
An Y, Garcia SL, Hambäck PA
mSystems 10 (6) e0172324 [2025-06-17; online 2025-05-13]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Fin Whale as a Sink of Legacy and Emerging Contaminants: First Integrated Chemical Exposomics and Gene Expression Analysis in Cetaceans
Fossi MC, Limonta G, Baini M, ..., Rosso M, Panti C
Environ. Sci. Technol. 59 (23) 11477-11492 [2025-06-17; online 2025-06-02]
Exposomics [Collaborative]
PubMed DOI Crossref
Cryo-Electron Microscopy Provides Mechanistic Insights into Solution-Dependent Polymorphism and Cross-Aggregation Phenomena of the Human and Rat Islet Amyloid Polypeptides.
Valli D, Ooi SA, Kaya I, ..., Andrén PE, Maj M
Biochemistry 64 (12) 2583-2595 [2025-06-17; online 2025-05-26]
Cryo-EM [Service] Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Beta-blockers prolong response to androgen deprivation therapy in prostate cancer through modulation of the neuro-immuno-oncology axis.
Thulin MH, Ramberg H, Nielsen HK, ..., Mælandsmo GM, Taskén KA
J Transl Med 23 (1) 672 [2025-06-17; online 2025-06-17]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Synthesis and Evaluation of Pseudoglucosinolates Releasing Isothiocyanates in the Presence of Azoreductases.
Chakrabarti A, Ganskow CSG, Kagho MD, ..., Brönstrup M, Klahn P
ChemBioChem 26 (12) e202500152 [2025-06-16; online 2025-05-29]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Synthesis and Evaluation of Pseudo glucosinolates Releasing Isothiocyanates in the Presence of Azoreductases
Chakrabarti A, Ganskow CSG, Kagho MD, ..., Brönstrup M, Klahn P
ChemBioChem 26 (12) - [2025-06-16; online 2025-05-29]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Proteomic analysis of human kidney biopsies unveils emerging acute kidney injury very early after liver graft reperfusion.
Norén Å, Boi R, Pullerits R, ..., Nyström J, Oltean M
J Transl Med 23 (1) 658 [2025-06-16; online 2025-06-16]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Cardiovascular protein profiling in patients with first-episode psychosis.
Malmqvist A, Eren F, Schwieler L, ..., Engberg G, Erhardt S
Schizophrenia (Heidelb) 11 (1) 88 [2025-06-14; online 2025-06-14]
Affinity Proteomics Stockholm [Service] Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Genomic Analysis of Trichotillomania.
Halvorsen MW, Garrett ME, Cuccaro ML, Ashley-Koch AE, Crowley JJ
Am. J. Med. Genet. B Neuropsychiatr. Genet. - (-) e33035 [2025-06-13; online 2025-06-13]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Early-Life Diet Diversity and the Subsequent Risk of Inflammatory Bowel Disease: Findings From Two Scandinavian Birth Cohorts.
Guo A, Ludvigsson J, Hård Af Segerstad EM, ..., Størdal K, Mårild K
Inflamm Bowel Dis 31 (6) 1493-1501 [2025-06-13; online 2024-09-14]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
RNA transcripts regulate G-quadruplex landscapes through G-loop formation.
Sato K, Lyu J, van den Berg J, ..., Elsässer SJ, Knipscheer P
Science 388 (6752) 1225-1231 [2025-06-12; online 2025-06-12]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Deep plasma proteomics identifies and validates an eight-protein biomarker panel that separate benign from malignant tumors in ovarian cancer.
Moskov M, Hedlund Lindberg J, Lycke M, ..., Stålberg K, Enroth S
Commun Med (Lond) 5 (1) 230 [2025-06-12; online 2025-06-12]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Spatial organization, chromatin accessibility and gene-regulatory programs defining mouse sensory neurons.
Krauter D, Kupari J, Usoskin D, ..., Zhang MD, Ernfors P
Commun Biol 8 (1) 908 [2025-06-11; online 2025-06-11]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Exploring the O-glycomic Degradome Using Natural Mucin Libraries.
Tofthagen M, Jin C, Patel P, ..., Maciej-Hulme ML, Karlsson NG
Methods Mol. Biol. 2942 (-) 145-156 [2025-06-11; online 2025-06-11]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Daily profiles of plasma short-chain fatty acids after the intake of three different cereal fibers: a randomized controlled study.
Costabile G, Vitale M, Testa R, ..., Riccardi G, Giacco R
Eur J Nutr 64 (5) 217 [2025-06-11; online 2025-06-11]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Associations between physical activity and CVD-related metabolomic and proteomic biomarkers.
Ekblom Ö, Björkbacka H, Börjesson M, ..., Wennberg P, Östgren CJ
PLoS ONE 20 (6) e0325720 [2025-06-11; online 2025-06-11]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Revised Diffusion Law Permits Quantitative Nanoscale Characterization of Membrane Organization.
Svobodová B, Št'astný D, Blom H, ..., Hof M, Šachl R
Anal. Chem. 97 (22) 11478-11485 [2025-06-10; online 2025-05-29]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Melamine-Based Molecularly Imprinted Monoliths Targeting Glyphosate in Aqueous Media: Synthesis and Binding Mechanism Elucidation.
Huynh CM, Luong NT, Nguyen T, ..., Boily JF, Irgum K
ACS Omega 10 (22) 22412-22425 [2025-06-10; online 2025-05-23]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Genomic insights into antimicrobial resistance and virulence of E. coli in central Ethiopia: a one health approach.
Chekole WS, Potgieter L, Adamu H, ..., Tessema TS, Magnusson U
Front Microbiol 16 (-) 1597580 [2025-06-10; online 2025-06-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Metagenomic insights into the complex viral composition of the enteric RNA virome in healthy and diarrheic calves from Ethiopia.
Bergholm J, Tessema TS, Blomström AL, Berg M
Virol J 22 (1) 188 [2025-06-07; online 2025-06-07]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Exploring Fungal Communities in the Needles of Marginal Conifer Tree Populations
Lazarević J, Menkis A
Forests 16 (6) 968 [2025-06-07; online 2025-06-07]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Unlocking novel T cell-based immunotherapy for hepatocellular carcinoma through neoantigen-driven T cell receptor isolation.
Maravelia P, Yao H, Cai C, ..., Buggert M, Pasetto A
Gut 74 (7) 1125-1136 [2025-06-06; online 2025-06-06]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Three-dimensional cell-cell interactions promote direct reprogramming of patient fibroblasts into functional and transplantable neurons.
Kajtez J, Laurin K, Nilsson F, ..., Habekost M, Parmar M
Sci Adv 11 (23) eadq7855 [2025-06-06; online 2025-06-06]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
The low endoribonuclease activity and lack of rNMP preference of human mitochondrial topoisomerase 1 protect against ribonucleotide-dependent deletions
Bader CPJ, Miyazaki-Kasho E, Forslund JME, ..., Wessels M, Wanrooij PH
- 53 (11) - [2025-06-06; online 2025-06-06]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Sex-biased Migration and Demographic History of the Big European Firefly Lampyris noctiluca.
Catalán A, Gygax D, Candolin U, ..., Duchen P, Höhna S
Mol. Biol. Evol. 42 (6) - [2025-06-04; online 2025-06-21]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Quantitative Mass Spectrometry Imaging Protocols for Spatially Heterogeneous Samples.
Shariatgorji R, Niehues M, Nilsson A, ..., Svenningsson P, Andrén PE
Anal. Chem. 97 (21) 10957-10961 [2025-06-03; online 2025-05-22]
Spatial Mass Spectrometry [Technology development]
PubMed DOI Crossref
Pooled optical screening in bacteria using chromosomally expressed barcodes.
Soares RRG, García-Soriano DA, Larsson J, ..., Nilsson M, Elf J
Commun Biol 8 (1) 851 [2025-06-03; online 2025-06-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Pathway activation model for personalized prediction of drug synergy.
Trac QT, Huang Y, Erkers T, ..., Pawitan Y, Vu TN
Elife 13 (-) - [2025-06-03; online 2025-06-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Wastewater surveillance of SARS-CoV-2 from aircraft to citywide monitoring.
Perez-Zabaleta M, Berg C, Latorre-Margalef N, ..., Hugerth LW, Cetecioglu Z
Nat Commun 16 (1) 5125 [2025-06-02; online 2025-06-02]
NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The genome sequence of the Eurasian Curlew, Numenius arquata (Linnaeus, 1758).
Walsh G, Donoghue BO, Höglund J, ..., Tree of Life Core Informatics collective , Darwin Tree of Life Consortium
Wellcome Open Res 10 (-) 298 [2025-06-02; online 2025-06-02]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Referenceless 4D flow cardiovascular magnetic resonance with deep learning.
Trenti C, Ylipää E, Ebbers T, ..., Engvall J, Dyverfeldt P
J Cardiovasc Magn Reson 27 (2) 101920 [2025-06-02; online 2025-06-02]
AIDA Data Hub [Service]
DOI Crossref
Integrating Cell Painting and Thermal Proteome Profiling for Inference of Targets and Mechanism of Action
Johansson C, Johansson M, Carreras Puigvert J, Spjuth O, Jansson ET
- - (-) - [2025-06-02; online 2025-06-02]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Antimicrobial resistance and serotype distribution of Salmonella spp. isolated from fresh foods in Cambodia.
Huoy L, Nasirzadeh L, Phan K, ..., Bongcam-Rudloff E, Boqvist S
J Appl Microbiol 136 (6) - [2025-06-02; online 2025-06-03]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The acute effects of neuromuscular electrical stimulation on coagulation and cardiovascular factors.
Flodin J, Reitzner SM, Mahmoud Hourani Soutari N, ..., Antovic JP, Ackermann PW
Physiol. Genomics 57 (6) 391-402 [2025-06-01; online 2025-04-16]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Transcriptomic characterization of maturing neurons from human neural stem cells across developmental time points.
Hosseini K, Philippot G, Salomonsson SB, ..., Gholizadeh E, Fredriksson R
IBRO Neurosci Rep 18 (-) 679-689 [2025-06-00; online 2025-04-17]
Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Trajectories and dimensional phenotypes of depressive symptoms throughout pregnancy and postpartum in relation to prior premenstrual symptoms.
Schleimann-Jensen E, Sundström-Poromaa I, Meltzer-Brody S, ..., Skalkidou A, Comasco E
Br J Psychiatry 226 (6) 401-409 [2025-06-00; online 2025-06-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Small molecules restore mutant mitochondrial DNA polymerase activity.
Valenzuela S, Zhu X, Macao B, ..., Gustafsson CM, Falkenberg M
Nature 642 (8067) 501-507 [2025-06-00; online 2025-04-09]
Cryo-EM [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer.
Sur I, Zhao W, Zhang J, ..., de la Roche M, Taipale J
Life Sci. Alliance 8 (6) - [2025-06-00; online 2025-04-03]
NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Repeatability of evolution and genomic predictions of temperature adaptation in seed beetles.
Rêgo A, Baur J, Girard-Tercieux C, ..., Stelkens R, Berger D
Nat Ecol Evol 9 (6) 1061-1074 [2025-06-00; online 2025-05-16]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Proteomic signatures for fibrosis in MASLD: a biopsy-proven dual-cohort study.
Blomdahl J, Åberg M, Fridén M, ..., Ekstedt M, Vessby J
Scand. J. Gastroenterol. 60 (6) 597-605 [2025-06-00; online 2025-04-16]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Preserving Neuronal Chemical Messengers: Heat Stabilization Versus Snap Freezing for Improved MALDI Mass Spectrometry Imaging of Brain Tissues.
Salviati E, Luptáková D, Nilsson A, ..., Roman E, Andrén PE
J. Neurochem. 169 (6) e70122 [2025-06-00; online 2025-06-16]
Spatial Mass Spectrometry [Technology development]
PubMed DOI Crossref
Precision Omics Initiative Sweden (PROMISE) will integrate research with healthcare.
Kämpe A, Gudmundsson S, Walsh CP, ..., Lindstrand A, Lappalainen T
Nat. Med. 31 (6) 1730-1732 [2025-06-00; online 2025-04-05]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Lund [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Phylogenetic relationships and the identification of allopolyploidy in circumpolar Silene sect. Physolychnis.
Quatela AS, Cangren P, de Lima Ferreira P, ..., de Boer HJ, Oxelman B
Am. J. Bot. 112 (6) e70051 [2025-06-00; online 2025-05-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Multimorbidity patterns and blood biomarkers of Alzheimer's disease in community-dwelling cognitively unimpaired older adults.
Marengoni A, Grande G, Valletta M, ..., Winblad B, Vetrano DL
Alzheimers Dement 21 (6) e70411 [2025-06-00; online 2025-06-23]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Implications of Breeding for Growth on Drought Tolerance in Scots Pine (Pinus sylvestris L.)-Insights From Metabolomics and High-Throughput Plant Architecture Analysis.
Gil-Muñoz F, Ranade SS, Hayatgheibi H, ..., Östlund L, García-Gil MR
Evol Appl 18 (6) e70122 [2025-06-00; online 2025-06-23]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Green Listed v2.0: A Web Application for Streamlined Design of Custom CRISPR Screens.
Henkel E, Li Z, Uvehag D, ..., Henkel M, Wermeling F
CRISPR J 8 (3) 216-223 [2025-06-00; online 2025-05-07]
CRISPR Functional Genomics [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetically Determined Inflammation-Related Proteins in Asthma and Type-2 Signatures.
Hernandez-Pacheco N, Björkander S, Merid SK, ..., Schwenk JM, Melén E
Allergy 80 (6) 1702-1714 [2025-06-00; online 2025-06-04]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Frequent Hybridisation Between Parapatric Lekking Bird-of-Paradise Species.
Thörn F, Müller IA, Soares AER, ..., Blom MPK, Irestedt M
Mol. Ecol. 34 (11) e17780 [2025-06-00; online 2025-04-29]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Fermentative Yeast Diversity at the Northern Range Limit of Their Oak Tree Hosts.
Pinto J, Haberkorn C, Franzén M, Tack AJM, Stelkens R
Environ Microbiol Rep 17 (3) e70110 [2025-06-00; online 2025-05-25]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Excitatory and inhibitory neurotransmitter alterations with advancing age and injury in the mouse retina.
Bell KC, Chrysostomou V, Karlsson M, ..., Williams PA, Crowston JG
Neurobiol. Aging 150 (-) 69-79 [2025-06-00; online 2025-03-08]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Enduring modulation of dorsal raphe nuclei regulates (R,S)-ketamine-mediated resilient stress-coping behavior.
Camargo A, Nilsson A, Shariatgorji R, ..., Andren PE, Svenningsson P
Mol. Psychiatry 30 (6) 2504-2516 [2025-06-00; online 2024-11-26]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
EMD missense variant causes X-linked isolated dilated cardiomyopathy with myocardial emerin deficiency.
Bulmer L, Ljungman C, Hallin J, ..., Oldfors A, Gummesson A
Eur. J. Hum. Genet. 33 (6) 775-783 [2025-06-00; online 2025-03-10]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Direct and indirect pathways linking the Lon protease to motility behaviors in the pathogen Pseudomonas aeruginosa.
Kallazhi A, Rahman A, Römling U, Jonas K
PLoS Pathog. 21 (6) e1013288 [2025-06-00; online 2025-06-25]
Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
Diffuse large B cell lymphoma in rheumatoid arthritis patients is associated with elevated B-cell driving factors including CXCL13.
Euler N, Hellbacher E, Klint EA, ..., Grönwall C, AUTO-LYMPHOMA study group
Clin. Immunol. 275 (-) 110476 [2025-06-00; online 2025-03-19]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Diel Bacterioplankton Community Dynamics Under Contrasting Light Regimes.
Papadopoulou S, Linkhorst A, Balmonte JP, ..., Bertilsson S, Székely AJ
Environ Microbiol Rep 17 (3) e70099 [2025-06-00; online 2025-05-09]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Defining short linear motif binding determinants by phage display-based deep mutational scanning.
Benz C, Maassen L, Simonetti L, ..., Davey NE, Ivarsson Y
Protein Sci. 34 (6) e70174 [2025-06-00; online 2025-05-25]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Basal and exercise-induced expression of NLRP3 inflammasome-related components is increased in patients with chronic coronary syndrome.
Mahmood Z, Bäck M, Leanderson P, ..., Skoglund C, Jonasson L
Atherosclerosis 405 (-) 119227 [2025-06-00; online 2025-04-30]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Bacterial transcriptional repressor NrdR - a flexible multifactorial nucleotide sensor.
Rozman Grinberg I, Bimaï O, Shahid S, ..., Sjöberg BM, Logan DT
FEBS J. 292 (12) 3091-3112 [2025-06-00; online 2025-03-03]
Cryo-EM [Service]
DOI Crossref
An optimised Bcl‐3 inhibitor for melanoma treatment
Saamarthy K, Daams R, Sime W, ..., Strand D, Massoumi R
British Journal of Pharmacology 182 (11) 2426-2446 [2025-06-00; online 2025-02-12]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
An Investigation of TDA1 Deficiency in Saccharomyces cerevisiae During Diauxic Growth.
Bjurström EY, Lasin P, Brunnsåker D, Tiukova IA, King RD
Yeast 42 (5-7) 142-156 [2025-06-00; online 2025-06-26]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Abundance of dopamine and its receptors in the brain and adipose tissue following diet-induced obesity or caloric restriction.
Hukema FW, Hetty S, Kagios C, ..., Roman E, Eriksson JW
Translational Research 280 (-) 41-54 [2025-06-00; online 2025-05-08]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
A marine and salt marsh sediment organic carbon database for European regional seas (EURO-CARBON).
Graversen AEL, Lønborg C, Addamo AM, ..., Zygadlowska OM, Jensen DK
Data Brief 60 (-) 111595 [2025-06-00; online 2025-05-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Human LY9 governs CD4+ T cell IFN-γ immunity to Mycobacterium tuberculosis.
Ogishi M, Puchan J, Yang R, ..., Boisson-Dupuis S, Casanova JL
Sci Immunol 10 (107) eads7377 [2025-05-30; online 2025-05-30]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response.
Fineschi S, Klar J, Lopez Egido JR, ..., Kaden R, Dahl N
Front Immunol 16 (-) 1589589 [2025-05-30; online 2025-05-30]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Design of a Streptolysin O Epitope-Centric Nanoparticle Vaccine Against Streptococcus pyogenes
Tang D, Chao Y, Hjortswang E, ..., Malmström L, Malmström J
- - (-) - [2025-05-28; online 2025-05-28]
Cryo-EM [Service]
PubMed DOI Crossref
Rab7 inhibitor enhances stem cell differentiation into keratinocyte-like cells with anti-inflammatory properties.
Alghazali R, Tabebi M, Elmasry M, El-Serafi A
Front Immunol 16 (-) 1503007 [2025-05-26; online 2025-05-26]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
A randomized controlled cross-over trial of differences in acute effects on serum metabolites from isocaloric meals based on red meat, fatty fish, or soy protein.
Lindqvist HM, Hulander E, Bärebring L, Gjertsson I, Winkvist A
Eur J Nutr 64 (5) 187 [2025-05-26; online 2025-05-26]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Modelling POLG mutations in mice unravels a critical role of POLγΒ in regulating phenotypic severity.
Corrà S, Zuppardo A, Valenzuela S, ..., Falkenberg M, Viscomi C
Nat Commun 16 (1) 4782 [2025-05-23; online 2025-05-23]
Cryo-EM [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Development of Langat virus infectious clones as a platform for live-attenuated tick-borne encephalitis vaccine.
Asghar N, Jaafar R, Valko A, ..., Lindqvist CM, Johansson M
Npj Viruses 3 (1) 44 [2025-05-23; online 2025-05-23]
Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]
DOI Crossref
Three-Dimensional Atomic-Level Structure of an Amorphous Glucagon-Like Peptide-1 Receptor Agonist
Torodii D, Cordova M, Holmes JB, ..., Schantz S, Emsley L
J. Am. Chem. Soc. 147 (20) 17077-17087 [2025-05-21; online 2025-05-07]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Seasonal dynamics and nutrient controls of biogenic silica in Baltic Sea surface microplankton and picoplankton communities.
Churakova Y, Aguilera A, Charalampous E, ..., Pinhassi J, Farnelid H
Appl. Environ. Microbiol. 91 (5) e0067625 [2025-05-21; online 2025-04-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Metabolomic-genomic prediction realizes small increases in accuracy of estimated breeding values for daily gain in pigs
Guo X, Sarup P, Bay Nord A, ..., Ostersen T, Christensen OF
Genet. Sel. Evol. 57 (1) - [2025-05-21; online 2025-05-21]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Data of the Insect Biome Atlas: a metabarcoding survey of the terrestrial arthropods of Sweden and Madagascar.
Miraldo A, Sundh J, Iwaszkiewicz-Eggebrecht E, ..., Roslin T, Ronquist F
Sci Data 12 (1) 835 [2025-05-21; online 2025-05-21]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The ACBD3 protein coordinates ER-Golgi contacts to enable productive TBEV infection.
Yau W-L, Peters MBA, Rönfeldt S, ..., Överby AK, Lundmark R
J. Virol. 99 (5) e0222424 [2025-05-20; online 2025-04-10]
Cryo-EM [Service] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Marked mucosal lipid shifts in treatment refractory inflammatory bowel disease: a lipidomic study.
Moe ØK, Gao Q, Geng D, ..., Florholmen JR, Moritz T
BMC Gastroenterol 25 (1) 389 [2025-05-20; online 2025-05-20]
Swedish Metabolomics Centre [Collaborative]
PubMed DOI Crossref
IL1RAP Expression in Human Atherosclerosis: A Target of Novel Antibodies to Reduce Vascular Inflammation and Adhesion.
Lindkvist M, Göthlin Eremo A, Paramel GV, ..., Sirsjö A, Fransén K
J Am Heart Assoc 14 (10) e039557 [2025-05-20; online 2025-05-15]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Single-cell RNA-sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS.
Schweingruber C, Nijssen J, Mechtersheimer J, ..., Ruepp MD, Hedlund E
Nat Commun 16 (1) 4633 [2025-05-19; online 2025-05-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Selection for Tameness in Red Junglefowl Recapitulates Genetic Loci Associated With Domestication-Related Brain Composition.
Guerrero-Bosagna C, Pértille F, Moradinour Z, ..., Jensen P, Wright D
Mol. Ecol. - (-) e17788 [2025-05-19; online 2025-05-19]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Brain tumors induce immunoregulatory dendritic cells in draining lymph nodes that can be targeted by OX40 agonist treatment.
Badillo-Godinez O, Niemi J, Helfridsson L, ..., Nelander S, Hellström M
J Immunother Cancer 13 (5) - [2025-05-19; online 2025-05-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
QS molecules change the planktonic/mineral subpopulations distribution of moderately thermophilic leaching bacteria in pyrite and decrease leaching in chalcopyrite.
Salas B, Bellenberg S, Nilsson E, ..., Dopson M, Vera M
Front Microbiol 16 (-) 1592588 [2025-05-16; online 2025-05-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Preparation for mitosis requires gradual CDK1 activation.
Akopyan K, Hao Z, Lindqvist A
iScience 28 (5) 112292 [2025-05-16; online 2025-03-25]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Modular deregulation of central carbon metabolism for efficient xylose utilization in Saccharomyces cerevisiae.
Li X, Wang Y, Chen X, ..., Nielsen J, Chen Y
Nat Commun 16 (1) 4551 [2025-05-16; online 2025-05-16]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Human proteome distribution atlas for tissue-specific plasma proteome dynamics.
Malmström E, Malmström L, Hauri S, ..., Niméus E, Malmström J
Cell 188 (10) 2810-2822.e16 [2025-05-15; online 2025-04-08]
Clinical Proteomics Lund [Technology development]
PubMed DOI Crossref
Cryptic infection of a giant virus in a unicellular green alga.
Erazo-Garcia MP, Sheyn U, Barth ZK, ..., Moniruzzaman M, Aylward FO
Science 388 (6748) eads6303 [2025-05-15; online 2025-05-15]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Revised phylogeny of mouflon based on expanded sampling of mitogenomes.
Mereu P, Pirastru M, Morell Miranda P, ..., Günther T, Leoni GG
PLoS ONE 20 (5) e0323354 [2025-05-14; online 2025-05-14]
Ancient DNA [Service] Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Metagenomic biodiversity assessment within an offshore wind farm.
Serivichyaswat PT, Scholte T, Wilms T, Stranddorf L, van der Valk T
Sci Rep 15 (1) 16786 [2025-05-14; online 2025-05-14]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Proteomic and lipidomic profiling of immune cell-derived subpopulations of extracellular vesicles
Lischnig A, Karimi N, Larsson P, ..., Olin AC, Lässer C
- - (-) - [2025-05-13; online 2025-05-13]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Combining spatial transcriptomics with tissue morphology.
Chelebian E, Avenel C, Wählby C
Nat Commun 16 (1) 4452 [2025-05-13; online 2025-05-13]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
Combining live fluorescence imaging with in situ cryoelectron tomography sheds light on the septation process in Deinococcus radiodurans.
Gaifas L, Kleman JP, Lacroix F, ..., Gutsche I, Timmins J
Proc. Natl. Acad. Sci. U.S.A. 122 (19) e2425047122 [2025-05-13; online 2025-05-06]
Cryo-EM [Collaborative]
DOI Crossref
Uromodulin velcro sheets and their interaction with uropathogenic E. coli
Banjara S, Wang H, Schaeffer C, ..., Sandblad L, Jovine L
- - (-) - [2025-05-11; online 2025-05-11]
Cryo-EM [Collaborative]
PubMed DOI Crossref
Maternal asthma and newborn DNA methylation.
Pedersen CT, Hoang TT, Jin J, ..., London SJ, Bønnelykke K
Clin Epigenetics 17 (1) 79 [2025-05-10; online 2025-05-10]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Streamlining Multiplexed Tissue Image Analysis with PIPΣX: An Integrated Automated Pipeline for Image Processing and EXploration for Diverse Tissue Types.
Mardamshina M, Navarro FB, Casals AM, ..., Wählby C, Lundberg E
bioRxiv - (-) - [2025-05-09; online 2025-05-09]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
DOI Crossref
Open-flask, ambient temperature direct arylation synthesis of mixed ionic-electronic conductors
Kimpel J, Kim Y, Schomaker H, ..., Sommer M, Müller C
Sci Adv 11 (19) - [2025-05-09; online 2025-05-09]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Multiplex quantification of endocrine proteins in volumetric dried blood spots.
Stauch W, Olausson J, Bendes A, Beck O, Schwenk JM
Clin Proteomics 22 (1) 18 [2025-05-09; online 2025-05-09]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
CpG island methylator phenotype classification improves risk assessment in pediatric T-cell acute lymphoblastic leukemia.
Schäfer Hackenhaar F, Refhagen N, Hagleitner M, ..., Hultdin M, Degerman S
Blood 145 (19) 2161-2178 [2025-05-08; online 2025-01-22]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Challenging the "Undruggable"─Targeting STAT3 but Identifying Potent TrkA-Targeted Inhibitors.
Iliev P, McCutcheon C, Admas TH, ..., Frank DA, Page BDG
J. Med. Chem. 68 (9) 9501-9524 [2025-05-08; online 2025-04-17]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Anti-integrin αvβ6 IgG antibody as a diagnostic and prognostic marker in ulcerative colitis: A cross-sectional and longitudinal study defining a specific disease phenotype.
Pertsinidou E, Salomon B, Bergemalm D, ..., Høivik ML, Halfvarson J
J Crohns Colitis 19 (5) - [2025-05-08; online 2025-04-19]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Elucidation of short linear motif-based interactions of the MIT and rhodanese domains of the ubiquitin-specific protease 8.
Konstantinou A, Varga JK, Córdova-Pérez A, ..., Kulathu Y, Ivarsson Y
Biol. Direct 20 (1) 59 [2025-05-06; online 2025-05-06]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sleeping for two: a cross-sectional study on associations between objectively measured sleep during early to mid-pregnancy and maternal and fetal outcomes and inflammatory biomarker profiles.
Macdonald C, Pitsillos T, Wikström AK, ..., Poromaa IS, Kallak TK
BMC Pregnancy Childbirth 25 (1) 533 [2025-05-05; online 2025-05-05]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Oligodendroglia vulnerability in the human dorsal striatum in Parkinson's disease.
Barba-Reyes JM, Harder L, Marco Salas S, ..., Serrano-Pozo A, Muñoz-Manchado AB
Acta Neuropathol. 149 (1) 46 [2025-05-05; online 2025-05-05]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] In Situ Sequencing [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Maintaining the Integral Membrane Proteome: Revisiting the Functional Repertoire of Integral Membrane Proteases
Fremlén H, Burmann BM
ChemBioChem 26 (9) - [2025-05-05; online 2025-03-18]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Integrative analyses of circulating microRNA expression profile in hexavalent chromium exposed workers - A cross-sectional study within the SafeChrom project.
Jiang Z, Pan M, Liu Y, ..., Broberg K, SafeChrom Project Team
J Hazard Mater 488 (-) 137367 [2025-05-05; online 2025-01-25]
NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
External validation of plasma CSF1 as a preoperative prognostic marker in patients with resectable intrahepatic cholangiocarcinoma.
Akiki A, Jacobsson H, Nouairia G, ..., Taflin H, Jansson H
Eur J Surg Oncol 51 (8) 110123 [2025-05-04; online 2025-05-04]
Affinity Proteomics Stockholm [Service]
Vikby – gård, gravar och gårdsritualer i Täby
Hamilton J, Lindberg M, Andersson L, ..., Magnell O, Plikk A
Uppdragsarkeologiska rapporter, diarenummer 431-2360-2020 - (-) - [2025-05-02; online 2025-05-02]
Ancient DNA [Service]
PubMed DOI Crossref
Unexpectedly low recombination rates and presence of hotspots in termite genomes.
Everitt T, Rönneburg T, Elsner D, ..., Korb J, Webster MT
Genome Res. 35 (5) 1124-1137 [2025-05-02; online 2025-05-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Museum Ecologies
Fredengren C, Ewing A, Owman C, Holmstedt J
Mus. Soc. 23 (1) - [2025-05-01; online 2025-05-01]
Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The value of age of onset and family history as predictors of molecular diagnosis in a Swedish cohort of inherited retinal disease.
De Geer K, Löfgren S, Lindstrand A, Kvarnung M, Björck E
Acta Ophthalmol 103 (3) 327-338 [2025-05-00; online 2024-12-06]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
TOR1AIP2 as a candidate gene for dystonia-hemichorea/hemiballism.
Kafantari E, Hernandez VJ, Necpál J, ..., Schwartz TU, Puschmann A
Parkinsonism Relat Disord 134 (-) 107781 [2025-05-00; online 2025-03-11]
Clinical Genomics Lund [Service]
DOI Crossref
Structural Battery Electrolytes Based on a Cross‐Linked Methacrylate Polymer and a Protic Ionic Liquid: Is There an Optimal Composition?
Abdou N, Pipertzis A, Chaudhary R, ..., Swenson J, Martinelli A
Adv Energy and Sustain Res 6 (5) - [2025-05-00; online 2025-03-11]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Sperm DNA methylation landscape and its links to male fertility in a non-model teleost using EM-seq.
Pappas F, Johnsson M, Andersson G, Debes PV, Palaiokostas C
Heredity (Edinb) 134 (5) 293-305 [2025-05-00; online 2025-03-18]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sex pheromone biosynthesis in the Oriental fruit moth Grapholita molesta involves Δ8 desaturation.
Dam MI, Ding BJ, Brauburger K, ..., Heckel DG, Löfstedt C
Insect Biochem. Mol. Biol. 180 (-) 104307 [2025-05-00; online 2025-03-30]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Proteins associated with preserved ratio impaired spirometry.
Lindberg E, Zhou X, Behndig AF, ..., Malinovschi A, Blomberg A
ERJ Open Res 11 (3) - [2025-05-00; online 2025-06-30]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Protein profiling in intensive care unit-treated COVID-19 patients identifies biomarkers of residual lung abnormalities.
Kalafatis D, Björnson M, Svobodová B, ..., Westergren-Thorsson G, Sköld M
ERJ Open Res 11 (3) - [2025-05-00; online 2025-06-23]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Neural ensembles that encode nocifensive mechanical and heat pain in mouse spinal cord.
Zhang MD, Kupari J, Su J, ..., Lagerström MC, Ernfors P
Nat. Neurosci. 28 (5) 1012-1023 [2025-05-00; online 2025-03-24]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mutational signatures and kataegis in pediatric B-cell precursor acute lymphoblastic leukemia.
Gunnarsson R, Yang M, Biloglav A, ..., Paulsson K, Johansson B
Hemasphere 9 (5) e70136 [2025-05-00; online 2025-05-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Large Inversions Shape Diversification and Genome Evolution in Common Quails.
Ravagni S, Montero-Mendieta S, Leonard JA, ..., Sanchez-Donoso I, Vilà C
Mol. Ecol. 34 (9) e17740 [2025-05-00; online 2025-04-04]
NGI Long read [Service] NGI Other NGI Short read NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Intermediate Monocytes and High Levels of Chemokine CCL3 Are Associated With Increased Risk of Atrial Fibrillation in the General Population.
Sveen KA, Smith JG, Goncalves I, ..., Björkbacka H, Bengtsson E
Circ Arrhythm Electrophysiol 18 (5) e013621 [2025-05-00; online 2025-04-17]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Identification of biallelic POLA2 variants in two families with an autosomal recessive telomere biology disorder.
Kvarnung M, Pettersson M, Chun-On P, ..., Nordgren A, Tesi B
Eur. J. Hum. Genet. 33 (5) 580-587 [2025-05-00; online 2024-11-30]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
High-throughput biodiversity surveying sheds new light on the brightest of insect taxa.
Iwaszkiewicz-Eggebrecht E, Goodsell RM, Bengsson BÅ, ..., Roslin T, Ronquist F
Proc. Biol. Sci. 292 (2046) 20242974 [2025-05-00; online 2025-05-14]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Hemagglutinin Protease HapA Associated With Vibrio cholerae Outer Membrane Vesicles (OMVs) Disrupts Tight and Adherens Junctions.
Baryalai P, Irenaeus D, Toh E, ..., Nadeem A, Wai SN
J Extracell Vesicles 14 (5) e70092 [2025-05-00; online 2025-05-26]
Cryo-EM [Service]
PubMed DOI Crossref
Genome-wide association study of direct oral anticoagulants and their relation to bleeding.
Attelind S, Eriksson N, Wadelius M, Hallberg P
Eur J Clin Pharmacol 81 (5) 771-783 [2025-05-00; online 2025-03-21]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Fertilizer‐induced soil carbon rapidly disappears after clearcutting in boreal production forests
Boeraeve M, Granath G, Lindahl BD, Clemmensen KE, Strengbom J
Journal of Applied Ecology 62 (5) 1202-1215 [2025-05-00; online 2025-04-06]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Error Reduction in Leukemia Machine Learning Classification With Conformal Prediction.
Lysenkova Wiklander M, Zachariah D, Krali O, Nordlund J
JCO Clin Cancer Inform 9 (-) e2400324 [2025-05-00; online 2025-05-28]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Effects of lipid-based nutrient supplements on gut markers in stunted children: Secondary analysis of a randomised trial.
Pesu H, Mbabazi J, Mutumba R, ..., Friis H, Grenov B
J Pediatr Gastroenterol Nutr 80 (5) 889-898 [2025-05-00; online 2025-03-03]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Characterization of Extracellular Vesicles Derived From Human Precision-Cut Liver Slices in Metabolic Dysfunction-Associated Steatotic Liver Disease.
Geng Y, Luo K, Stam J, ..., Wolters JC, Olinga P
J Extracell Biol 4 (5) e70043 [2025-05-00; online 2025-04-30]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Blood biomarkers of Alzheimer's disease and 12-year muscle strength trajectories in community-dwelling older adults: a cohort study.
Ornago AM, Pinardi E, Grande G, ..., Bellelli G, Vetrano DL
Lancet Healthy Longev 6 (5) 100715 [2025-05-00; online 2025-05-22]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Bamboozle: A Bioinformatic Tool for Identification and Quantification of Intraspecific Barcodes.
Pinder MIM, Andersson B, Blossom H, ..., Rengefors K, Töpel M
Mol Ecol Resour 25 (4) e14067 [2025-05-00; online 2025-02-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Maternal Adiponectin Decreases Placenta Nutrient Transport in Mice.
Samad M, Ulfenborg B, Soleimani Sani S, ..., Wernstedt Asterholm I, Benrick A
FASEB J. 39 (8) e70556 [2025-04-30; online 2025-04-18]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
High Content Imaging in Drug Discovery
- - (-) - [2025-04-30; online 2025-04-30]
Chemical Biology Consortium Sweden [Technology development]
PubMed DOI Crossref
BTB/POZ-MATH proteins regulate Arabidopsis seedling development by promoting auxin-independent degradation of the Aux/IAA protein IAA10.
Ban Z, Hou YJ, Ku E, ..., Zhao Y, Estelle M
Plant Physiol. 198 (1) - [2025-04-30; online 2025-04-21]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk.
Brandão LEM, Zhang L, Grip A, ..., Benedict C, Cedernaes J
Biomark Res 13 (1) 67 [2025-04-29; online 2025-04-29]
Affinity Proteomics Uppsala [Service] Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Structure and Inhibition of the Human Na+/H+ Exchanger SLC9B2.
Jung S, Kokane S, Li H, ..., Nomura N, Drew D
Int J Mol Sci 26 (9) - [2025-04-29; online 2025-04-29]
Cryo-EM [Service]
PubMed DOI Crossref
Met-ID: An Open-Source Software for Comprehensive Annotation of Multiple On-Tissue Chemical Modifications in MALDI-MSI.
Bjärterot P, Nilsson A, Shariatgorji R, ..., Käll L, Andrén PE
Anal. Chem. 97 (16) 9033-9041 [2025-04-29; online 2025-04-20]
Spatial Mass Spectrometry [Technology development]
PubMed DOI Crossref
Identification of TRIM21 and TRIM14 as Antiviral Factors Against Langat and Zika Viruses.
Tran PT, Kabir MH, Asghar N, ..., Melik W, Johansson M
Viruses 17 (5) - [2025-04-29; online 2025-04-29]
Glycoproteomics and MS Proteomics [Service]
PubMed
Antibody reactivity in cerebrospinal fluid and serum against the insulin-insulin-like growth factor 2 (INS-IGF2) protein is associated with psychotic symptomatology in patients with schizophrenia or related psychosis.
Melkersson K
Neuro Endocrinol. Lett. 46 (1) 1-14 [2025-04-28; online 2025-04-28]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Significant Associations Between Blood Cell Counts and Plasma Cytokines, Chemokines, and Growth Factors.
Eriksson LB, Eriksson MB, Gordh T, Larsson AO
Int J Mol Sci 26 (9) - [2025-04-25; online 2025-04-25]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Longitudinal changes in blood-borne geroscience biomarkers: results from a population-based study.
Picca A, Nguyen NV, Calvani R, ..., Calderón-Larrañaga A, Vetrano DL
Geroscience - (-) - [2025-04-24; online 2025-04-24]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis.
Sreenivasan AP, Vaivade A, Noui Y, ..., Spjuth O, Kultima K
NPJ Digit Med 8 (1) 224 [2025-04-24; online 2025-04-24]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A CRISPR homing screen finds a chloroquine resistance transporter-like protein of the Plasmodium oocyst essential for mosquito transmission of malaria.
Balakrishnan A, Hunziker M, Tiwary P, ..., Drew D, Billker O
Nat Commun 16 (1) 3895 [2025-04-24; online 2025-04-24]
Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The evaluation of biogenic silica in brackish and freshwater strains reveals links between phylogeny and silica accumulation in picocyanobacteria.
Aguilera A, Lundin D, Charalampous E, ..., Farnelid H, Pinhassi J
Appl. Environ. Microbiol. 91 (4) e0252724 [2025-04-23; online 2025-03-27]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Collaborative] NGI Short read NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Pregnancy is associated with a simultaneous but independent increase in circulating CD177pos and immature low-density granulocytes.
Dahlstrand Rudin A, Torell A, Popovic J, ..., Lundell AC, Bylund J
J Leukoc Biol 117 (4) - [2025-04-23; online 2024-12-19]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Sex differences in DNMT3A-mutant clonal hematopoiesis and the effects of estrogen.
Stomper J, Niroula A, Belizaire R, ..., Bandaru TS, Ebert BL
Cell Rep 44 (4) 115494 [2025-04-22; online 2025-04-02]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Omics Approach for Personalised Prevention of Type 2 Diabetes Mellitus for African and European Populations (OPTIMA): a protocol paper.
Goedecke JH, Danquah I, Abidha CA, ..., Landberg R, Olsson T
BMJ Open 15 (4) e099108 [2025-04-22; online 2025-04-22]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Mapping effective microRNA pairing beyond the seed using abasic modifications.
Kosek DM, Petzold K, Andersson ER
Nucleic Acids Res. 53 (8) - [2025-04-22; online 2025-04-29]
Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
Prognostic Value of the Circulating Tumor DNA Fraction in Metastatic Castration-resistant Prostate Cancer: Results from the ProBio Platform Trial.
Crippa A, Laere B, Discacciati A, ..., Eklund M, ProBio Investigators
Eur Urol Oncol - (-) - [2025-04-21; online 2025-04-21]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Constraints to gene flow increase the risk of genome erosion in the Ngorongoro Crater lion population.
Dussex N, Jansson I, van der Valk T, ..., E Mjingo E, Spong G
Commun Biol 8 (1) 640 [2025-04-21; online 2025-04-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Targeted inhibition of WIP1 and histone H3K27 demethylase activity synergistically suppresses neuroblastoma growth.
Treis D, Lundberg KI, Bell N, ..., Johnsen JI, Wickström M
Cell Death Dis 16 (1) 318 [2025-04-19; online 2025-04-19]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Karyotype evolution and speciation in Orthoptera.
Palacios-Gimenez OM, Castillo ERD, Schielzeth H
J. Evol. Biol. 38 (4) 516-529 [2025-04-19; online 2025-02-24]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Disruption-induced changes in syntrophic propionate and acetate oxidation: flocculation, cell proximity, and microbial activity.
Weng N, Najafabadi HN, Westerholm M
Biotechnol Biofuels Bioprod 18 (1) 45 [2025-04-19; online 2025-04-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis.
González-López A, Ge X, Larsson DSD, ..., Sanyal S, Selmer M
Nat Commun 16 (1) 3693 [2025-04-18; online 2025-04-18]
Cryo-EM [Service] Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
A zebrafish model of intestinal epithelial damage reveals macrophages and igfbp1a as major modulators of mucosal healing.
Morales Castro RA, Kern BC, Díaz-Basabe A, ..., Fransson J, Villablanca EJ
Mucosal Immunol - (-) - [2025-04-17; online 2025-04-17]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Breast cancer patient-derived scaffolds enhance the understanding of PD-L1 regulation and T cell cytotoxicity.
Garre E, Rhost S, Gustafsson A, ..., Ståhlberg A, Landberg G
Commun Biol 8 (1) 621 [2025-04-16; online 2025-04-16]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Amino acid restriction sensitizes lung cancer cells to ferroptosis via GCN2-dependent activation of the integrated stress response
Garellick VJ, Gul N, Horrieh P, ..., Sayin VI, Lindahl P
- - (-) - [2025-04-16; online 2025-04-16]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
In vivo composition of the mitochondrial nucleoid in mice.
García-Villegas R, Odenthal F, Giannoula Y, ..., Levander F, Larsson NG
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research - (-) 119955 [2025-04-15; online 2025-04-15]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Hyperplex PCR enables highly multiplexed analysis of point mutations in wastewater: Long-term SARS-CoV-2 variant surveillance in Sweden as a case study.
Soares RRG, Varg JE, Szabó A, ..., Malmberg M, Székely AJ
Water Res. 274 (-) 123154 [2025-04-15; online 2025-01-16]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Deciphering immune predictors of immunotherapy response: A multiomics approach at the pan-cancer level.
Li X, Pan L, Li W, ..., Sheng R, Wang Z
Cell Reports Medicine 6 (4) 101992 [2025-04-15; online 2025-03-06]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Choline levels in the pregenual anterior cingulate cortex associated with unpleasant pain experience and anxiety.
Hudhud L, Hauksson J, Haney M, ..., Eriksson J, Lindgren L
Neuroimage 310 (-) 121153 [2025-04-15; online 2025-03-16]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
High diversity of nitrifying bacteria and archaea in biofilms from a subsea tunnel.
Kop LFM, Koch H, Dalcin Martins P, ..., Jetten MSM, Lücker S
FEMS Microbiol. Ecol. 101 (5) - [2025-04-14; online 2025-03-29]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Deep targeted sequencing of circulating tumor DNA to inform treatment in patients with metastatic castration-resistant prostate cancer.
Nørgaard M, Rusan M, Kondrup K, ..., Lindberg J, Sørensen KD
J. Exp. Clin. Cancer Res. 44 (1) 120 [2025-04-14; online 2025-04-14]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Contamination on inner walls of syringes used for compounding and administration of hazardous drugs.
Sessink P, Tans B, Devolder D
J Oncol Pharm Pract - (-) 10781552251332884 [2025-04-13; online 2025-04-13]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Cytoskeletal alterations in neuronal cells implicate Toxoplasma gondii secretory machinery and host microRNA-containing extracellular vesicles.
Mazza T, Aslanzadeh M, Berentsen L, ..., Friedländer MR, Barragan A
Sci Rep 15 (1) 12606 [2025-04-12; online 2025-04-12]
NGI Other [Collaborative] NGI Short read [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Collaborative]
DOI Crossref
AutoLEI: An XDS-based Graphical User Interface for Automated Real-time and Offline Batch 3D ED/MicroED Data Processing
Wang L, Chen Y, Hutchinson ES, ..., Xu H, Zou X
- - (-) - [2025-04-12; online 2025-04-12]
Cryo-EM [Service]
DOI Crossref
Inflammatory and lipemic response to red meat intake in women with and without Rheumatoid Arthritis: a single meal study within a randomized controlled trial
Sällström T, Bärebring L, Hulander E, ..., Winkvist A, Lindqvist HM
BMC Nutr 11 (1) - [2025-04-11; online 2025-04-11]
Swedish NMR Centre [Service]
DOI Crossref
Antibacterial compounds against non-growing and intracellular bacteria
Kaldalu N, Bērziņš N, Berglund Fick S, ..., Hauryliuk V, Tenson T
npj Antimicrob Resist 3 (1) - [2025-04-11; online 2025-04-11]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
A red fluorescent lifeact marker to study actin morphology in podocytes.
Wiesner E, Binz-Lotter J, Tröder SE, ..., Wedlich-Söldner R, Hackl MJ
Sci Rep 15 (1) 12386 [2025-04-11; online 2025-04-11]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Nuclear AGO2 supports influenza A virus replication through type-I interferon regulation.
Huang HC, Fong M, Nowak I, ..., Angeletti D, Sarshad AA
Nucleic Acids Res. 53 (7) - [2025-04-10; online 2025-04-12]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genome-wide comparison reveals large structural variants in cassava landraces.
Landi M, Carluccio AV, Shah T, ..., Gisel A, Bongcam-Rudloff E
BMC Genomics 26 (1) 362 [2025-04-10; online 2025-04-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dual GSK-3β/HDAC Inhibitors Enhance the Efficacy of Macrophages to Control Mycobacterium tuberculosis Infection.
Kalsum S, Xu R, Akber M, ..., Zhou Y, Brighenti S
Biomolecules 15 (4) 550 [2025-04-09; online 2025-04-09]
Chemical Biology Consortium Sweden [Service]
DOI Crossref
Design, Synthesis, and Biophysical Characterization of Pyridine Bis‐Quinazoline Derivatives as Selective G‐Quadruplex DNA Stabilizers
Nath Das R, Chorell E
Chem. Eur. J. 31 (21) - [2025-04-09; online 2025-03-05]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
AMPK activator ATX-304 reduces oxidative stress and improves MASLD via metabolic switching.
Holm E, Vermeulen I, Parween S, ..., Remeseiro S, Hörnblad A
JCI Insight 10 (7) - [2025-04-08; online 2025-04-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Metabolic readouts of tumor instructed normal tissues (TINT) identify aggressive prostate cancer subgroups for tailored therapy.
Dudka I, Figueira J, Wikström P, Bergh A, Gröbner G
Front Mol Biosci 12 (-) 1426949 [2025-04-07; online 2025-04-07]
Swedish NMR Centre [Collaborative]
DOI Crossref
How and why to monitor social networks in dairy cows
Marina H, Hansson I, Ren K, ..., Woudstra S, Rönnegård L
Front. Anim. Sci. 6 (-) - [2025-04-07; online 2025-04-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Environmental drivers of the resistome across the Baltic Sea.
Serrana JM, Nascimento FJA, Dessirier B, Broman E, Posselt M
Microbiome 13 (1) 92 [2025-04-07; online 2025-04-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Comparison of the proteomic landscape in experimental ischemia reperfusion with versus without ischemic preconditioning.
Kakaei Y, Hussain S, Elmahdy A, ..., Omerovic E, Redfors B
Sci Rep 15 (1) 11836 [2025-04-07; online 2025-04-07]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Genetic aetiologies in relation to response to the ketogenic diet in 226 children with epilepsy.
Dahlin M, Stödberg T, Ekman E, Töhönen V, Wedell A
Brain Commun 7 (2) fcaf134 [2025-04-05; online 2025-04-05]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Genetic, clinical, lifestyle and sociodemographic risk factors for head and neck cancer: A UK Biobank study.
Tuomi L, Parris TZ, Rawshani A, ..., Orozco A, Finizia C
PLoS ONE 20 (4) e0318889 [2025-04-04; online 2025-04-04]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Genetic influence of a STAU2 frameshift mutation and RELN regulatory elements on performance in Icelandic horses.
Sigurðardóttir H, Eriksson S, Niazi A, ..., Kristjansson T, Lindgren G
Sci Rep 15 (1) 11641 [2025-04-04; online 2025-04-04]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ectoderm barcoding reveals neural and cochlear compartmentalization.
de Haan S, He J, Corbat AA, ..., Kelley MW, Andersson ER
Science 388 (6742) 60-68 [2025-04-04; online 2025-04-03]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
ATP1A3 dysfunction causes motor hyperexcitability and afterhyperpolarization loss in a dystonia model.
Akkuratov EE, Sorrell F, Picton LD, ..., Miles GB, Aperia A
Brain 148 (4) 1099-1105 [2025-04-03; online 2024-11-13]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
The protein kinases KIPK and KIPK-LIKE1 suppress overbending during negative hypocotyl gravitropic growth in Arabidopsis.
Xiao Y, Zourelidou M, Bassukas AEL, ..., Li J, Schwechheimer C
Plant Cell 37 (4) - [2025-04-02; online 2025-04-22]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
The identity of Canthydrus testaceus (Boheman, 1858) and a new faunistic record of Sternocanthus indicus (Wehncke, 1876) (Coleoptera: Noteridae).
Toledo ME, Negri I, Bergsten J
Zootaxa 5618 (2) 284-286 [2025-04-02; online 2025-04-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
On the origin of an insular hybrid butterfly lineage.
Boman J, Nolen ZJ, Backström N
Evolution 79 (4) 510-524 [2025-04-02; online 2025-01-27]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Design and application of a fluorescent probe for imaging of endogenous Bruton's tyrosine kinase with preserved enzymatic activity.
Valaka AP, Nyström H, Håversen L, ..., Borén J, Grøtli M
RSC Chem Biol 6 (4) 618-629 [2025-04-02; online 2025-02-20]
Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service] Swedish NMR Centre [Service]
PubMed DOI Crossref
A Million Years of Mammoth Mitogenome Evolution.
Chacón-Duque JC, Thomas Thorpe JA, Li W, ..., Heintzman PD, Dalén L
Mol. Biol. Evol. 42 (4) - [2025-04-01; online 2025-04-09]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
WOMEN WITH KNEE OSTEOARTHRITIS: POST-MENOPAUSAL PROGESTERONE IS LINKED TO PAIN INTENSITY, RADIOGRAPHIC SCORE, AND SYNOVIAL ALTERATION
Corciulo C, Askar F, Chatziagorou G, ..., Ekman A, Rudin A
Osteoarthr. Cartil. 33 (-) S428 [2025-04-00; online 2025-04-00]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Three cases with chronic obsessive compulsive disorder report gains in wellbeing and function following rituximab treatment.
Gallwitz M, Lindqvist I, Mulder J, ..., Burman J, Cunningham JL
Mol. Psychiatry 30 (4) 1396-1406 [2025-04-00; online 2024-09-21]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
The prognostic value of changes in Ki67 following neoadjuvant chemotherapy in residual triple-negative breast cancer: a Swedish nationwide registry-based study.
Nyqvist-Streng J, Helou M, Helou K, ..., Kovács A, Parris TZ
Breast Cancer Res. Treat. 210 (3) 719-736 [2025-04-00; online 2025-01-12]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
The guinea pig serves as an alternative model to study human preimplantation development.
Canizo JR, Zhao C, Petropoulos S
Nat Cell Biol 27 (4) 696-710 [2025-04-00; online 2025-04-04]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
The Development of Selective Chemical Probes for Serine Arginine Protein Kinase 3.
Hanke D, McCutcheon C, Page BDG
Chem Biol Drug Des 105 (4) e70101 [2025-04-00; online 2025-04-03]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Simulation-based evaluation of the impact of dose fractionation study design on antibiotic PKPD analyses.
Saporta R, Madan M, Friberg LE
JAC Antimicrob Resist 7 (2) dlaf057 [2025-04-00; online 2025-04-11]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Rapid traversal of vast chemical space using machine learning-guided docking screens.
Luttens A, Cabeza de Vaca I, Sparring L, ..., Norinder U, Carlsson J
Nat Comput Sci 5 (4) 301-312 [2025-04-00; online 2025-03-13]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Preclinical Protein Signatures of Crohn's Disease and Ulcerative Colitis: A Nested Case-Control Study Within Large Population-Based Cohorts.
Grännö O, Bergemalm D, Salomon B, ..., Karling P, Halfvarson J
Gastroenterology 168 (4) 741-753 [2025-04-00; online 2024-11-26]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Plasma H3Cit-DNA Discriminates Between Cancer and Inflammation in a Cohort of Patients with Unspecific Cancer Symptoms.
Wannberg F, Hjalmar V, Ng H, ..., Rosell A, Thålin C
Inflammation 48 (2) 760-769 [2025-04-00; online 2024-06-28]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows.
Marco Salas S, Kuemmerle LB, Mattsson-Langseth C, ..., Ishaque N, Nilsson M
Nat. Methods 22 (4) 813-823 [2025-04-00; online 2025-03-13]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] In Situ Sequencing [Technology development]
PubMed DOI Crossref
One Year of Oral Immunotherapy Impacts the Gut Microbiota and Plasma Metabolome of Peanut-Allergic Young Children.
Badolati I, de Jong Y, Uhl C, ..., Asarnoj A, Sverremark-Ekström E
Clin Exp Allergy 55 (4) 340-343 [2025-04-00; online 2024-11-27]
Swedish Metabolomics Centre [Service]
DOI Crossref
Non‐Native Earthworms Alter Carbon Sequestration in Arctic Tundra Ecosystems
Jonsson H, Blume‐Werry G, Wackett AA, ..., Sparrman T, Klaminder J
JGR Biogeosciences 130 (4) - [2025-04-00; online 2025-04-14]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
MIA40 suppresses cell death induced by apoptosis-inducing factor 1.
Mussulini BHM, Maruszczak KK, Draczkowski P, ..., Wasilewski M, Chacinska A
EMBO Rep. 26 (7) 1835-1862 [2025-04-00; online 2025-03-07]
Cryo-EM [Collaborative]
PubMed DOI Crossref
IER3: exploring its dual function as an oncogene and tumor suppressor.
Kanduri M, Subhash S, Putino R, Mahale S, Kanduri C
Cancer Gene Ther 32 (4) 450-463 [2025-04-00; online 2025-03-16]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Host Plasma Microenvironment in Immunometabolically Impaired HIV Infection Leads to Dysregulated Monocyte Function and Synaptic Transmission Ex Vivo.
Mikaeloff F, Gelpi M, Escós A, ..., Nielsen SD, Neogi U
Adv Sci (Weinh) 12 (16) e2416453 [2025-04-00; online 2025-02-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Folding of mRNA-DNA Origami for Controlled Translation and Viral Vector Packaging.
Seitz I, Saarinen S, Wierzchowiecka J, ..., Huiskonen JT, Kostiainen MA
Adv Mater 37 (15) e2417642 [2025-04-00; online 2025-02-27]
Cryo-EM [Service]
PubMed DOI Crossref
Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies.
Jakobsson JE, Menezes J, Krock E, ..., Svensson CI, Kultima K
J Pain 29 (-) 105331 [2025-04-00; online 2025-02-06]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Effects of Montelukast on Neuroinflammation in Parkinson's Disease: An Open Label Safety and Tolerability Trial with CSF Markers and [11C]PBR28 PET.
Wallin J, Forsberg A, Svenningsson P
Mov Disord 40 (4) 739-744 [2025-04-00; online 2025-02-06]
Swedish Metabolomics Centre [Service]
DOI Crossref
Dynamic networks connect the USP14 active site region with the proteasome interaction surface
Salomonsson J, Sjöstrand L, Eskilson A, ..., Sunnerhagen M, Ahlner A
Protein Sci. 34 (4) - [2025-04-00; online 2025-03-17]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Centennial-scale atmospheric CO2 rise increased photosynthetic efficiency in a tropical tree species.
Zwartsenberg SA, Sterck FJ, Haddad L, ..., Heinrich I, Zuidema PA
New Phytol. 246 (1) 131-143 [2025-04-00; online 2025-02-12]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
A genome-wide association study of imaging-defined atherosclerosis.
Gummesson A, Lundmark P, Chen QS, ..., Fall T, Gigante B
Nat Commun 16 (1) 2266 [2025-03-31; online 2025-03-31]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The DNA methylation landscape of primary triple-negative breast cancer.
Aine M, Nacer DF, Arbajian E, ..., Borg Å, Staaf J
Nat Commun 16 (1) 3041 [2025-03-28; online 2025-03-28]
Clinical Genomics Lund [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phylogeny of Palicoureeae (Rubiaceae) based on 353 low-copy nuclear genes - With particular focus on Hymenocoleus Robbr.
Thilén L, Lachenaud O, Thureborn O, Razafimandimbison SG, Rydin C
Mol. Phylogenet. Evol. - (-) 108338 [2025-03-28; online 2025-03-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
PIP2-mediated oligomerization of the endosomal sodium/proton exchanger NHE9.
Kokane S, Gulati A, Meier PF, ..., Fuster D, Drew D
Nat Commun 16 (1) 3055 [2025-03-28; online 2025-03-28]
Cryo-EM [Service]
PubMed DOI Crossref
Metabolomic profiling of shade response and in silico analysis of PAL homologs imply the potential presence of bifunctional ammonia lyases in conifers.
Ranade SS, García-Gil MR
Physiol Plantarum 177 (2) e70175 [2025-03-28; online 2025-03-28]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Heritability and polygenic load for comorbid anxiety and depression.
Tabrizi F, Rosén J, Grönvall H, ..., Speed D, Åhs F
Transl Psychiatry 15 (1) 98 [2025-03-27; online 2025-03-27]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Cell membranes sustain phospholipid imbalance via cholesterol asymmetry.
Doktorova M, Symons JL, Zhang X, ..., Levental KR, Levental I
Cell - (-) - [2025-03-26; online 2025-03-26]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Blood-based biomarkers of Alzheimer's disease and incident dementia in the community.
Grande G, Valletta M, Rizzuto D, ..., Fratiglioni L, Vetrano DL
Nat. Med. - (-) - [2025-03-26; online 2025-03-26]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Scotch Pine Cones-Derived Hard Carbon as an Anode Material for Sodium-Ion Battery Applications.
Rao YB, Sundman O, Holmboe M, Tavajohi N, Ohlin CA
ACS Omega 10 (11) 11158-11167 [2025-03-25; online 2025-03-11]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Immunological and structural evaluation of the intranasally administrated CVB1 whole-virus and VLP vaccines.
Soppela S, Plavec Z, Gröhn S, ..., Butcher SJ, Hankaniemi MM
Sci Rep 15 (1) 10198 [2025-03-25; online 2025-03-25]
Cryo-EM [Service]
PubMed DOI Crossref
Identification of a SNAI1 enhancer RNA that drives cancer cell plasticity.
Fan C, Wang Q, Krijger PHL, ..., de Laat W, Ten Dijke P
Nat Commun 16 (1) 2890 [2025-03-25; online 2025-03-25]
Bioinformatics Support for Computational Resources [Service] CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Exploring NLRP3-related phenotypic fingerprints in human macrophages using Cell Painting assay.
Herring M, Särndahl E, Kotlyar O, ..., Persson A, Alijagic A
iScience 28 (3) 111961 [2025-03-21; online 2025-02-05]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
A suitable strategy to find IAA metabolism mutants.
Casanova-Sáez R, Pěnčík A, Muñoz-Viana R, ..., Ljung K, Mateo-Bonmatí E
Physiol Plantarum 177 (2) e70166 [2025-03-21; online 2025-03-21]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
A large-scale sORF screen identifies putative microproteins involved in cancer cell fitness.
Schlesinger D, Dirks C, Navarro C, ..., Martinez TF, Elsässer SJ
iScience 28 (3) 111884 [2025-03-21; online 2025-01-23]
Bioinformatics Support for Computational Resources [Service] CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12.
Tai MDS, Ochoa L, Flydal MI, ..., Cuéllar J, Martinez A
Nat Commun 16 (1) 2755 [2025-03-20; online 2025-03-20]
Cryo-EM [Service]
PubMed DOI Crossref
Serum microRNAs as peripheral markers of primary aldosteronism.
Makhnov N, Axling F, Barazeghi E, ..., Åkerström T, Hellman P
Front Endocrinol (Lausanne) 16 (-) 1511096 [2025-03-20; online 2025-03-20]
Clinical Genomics [Service] Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
mRNA extracted from frozen buffy coat samples stored long term in tubes with no RNA preservative shows promise for downstream sequencing analyses.
Bovinder Ylitalo E, Vidman L, Harlid S, Van Guelpen B
PLoS ONE 20 (3) e0318834 [2025-03-19; online 2025-03-19]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
The genomic legacy of aurochs hybridisation in ancient and modern Iberian cattle.
Günther T, Chisausky J, Galindo-Pellicena ÁM, ..., Smith C, Valdiosera C
Elife 13 (-) - [2025-03-19; online 2025-03-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Using feedback in pooled experiments augmented with imputation for high genotyping accuracy at reduced cost.
Clouard C, Nettelblad C
G3 (Bethesda) 15 (3) - [2025-03-18; online 2025-01-23]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Titanium micro-particles are commonly found in soft tissues surrounding dental implants.
Dionigi C, Nagy G, Derks J, ..., Primetzhofer D, Berglundh T
Commun Med (Lond) 5 (1) 78 [2025-03-18; online 2025-03-18]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
The Role of Caspase-1 and Caspase-4 in Modulating Gingival Epithelial Cell Responses to Aggregatibacter actinomycetemcomitans Infection.
Demirel KJ, Neves Guimaraes A, Demirel I
Pathogens 14 (3) - [2025-03-18; online 2025-03-18]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Laparoscopic lavage in a purulent peritonitis model: impact on inflammatory proteins.
Sinclair E, Magnusson MK, Angenete E, ..., Öhman L, Haglind E
Eur J Med Res 30 (1) 180 [2025-03-18; online 2025-03-18]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Computational drug repurposing: approaches, evaluation of in silico resources and case studies.
Tanoli Z, Fernández-Torras A, Özcan UO, ..., Carreras-Puigvert J, Aittokallio T
Nat Rev Drug Discov - (-) - [2025-03-18; online 2025-03-18]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
A chromosome-level genome assembly of the European green toad (Bufotes viridis).
Rödin-Mörch P, Bunikis I, Choi E, ..., Proux-Wéra E, Höglund J
G3 (Bethesda) 15 (3) - [2025-03-18; online 2025-02-19]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
DOI Crossref
NQO1‐Responsive Prodrug for in Cellulo Release of Cytochalasin B as Cancer Cell‐Targeted Migrastatic
Kagho MD, Schmidt K, Lambert C, ..., Stradal TEB, Klahn P
Small - (-) - [2025-03-17; online 2025-03-17]
Swedish NMR Centre [Service]
DOI Crossref
Human jejunal enteroids for studies of epithelial drug transport and metabolism
Ceylan M, Tzioufa F, Di Martino ML, ..., Hubert M, Artursson P
- - (-) - [2025-03-17; online 2025-03-17]
Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Targeting TUBG1 in RB1‐negative tumors
Lindström L, Zhou J, Villoutreix BO, ..., Olsson R, Alvarado‐Kristensson M
The FASEB Journal 39 (5) - [2025-03-15; online 2025-02-28]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Sox9 and nuclear factor I transcription factors regulate the timing of neurogenesis and ependymal maturation in dopamine progenitors.
Lahti L, Volakakis N, Gillberg L, ..., Gronostajski R, Perlmann T
Development 152 (6) - [2025-03-15; online 2025-03-26]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Deciphering the phenotypic, inflammatory, and endocrine disrupting impacts of e-waste plastic-associated chemicals.
Alijagic A, Seilitz FS, Bredberg A, ..., Särndahl E, Engwall M
Environ. Res. 269 (-) 120929 [2025-03-15; online 2025-01-23]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Dietary patterns and blood-based biomarkers of Alzheimer's disease in cognitively intact older adults: Findings from a population-based study.
Mrhar A, Carballo-Casla A, Grande G, ..., Calderón-Larrañaga A, Vetrano DL
J Prev Alzheimers Dis - (-) 100124 [2025-03-14; online 2025-03-14]
Affinity Proteomics Stockholm [Collaborative]
DOI Crossref
2024 OME-NGFF workflows hackathon
Lüthi J, Albert M, Anita L, ..., Ulman V, Uhlmann V
- - (-) - [2025-03-14; online 2025-03-14]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
DOI Crossref
Above-Filter Digestion Proteomics reveals drug targets and localizes ligand binding site
Sokolova B, Gharibi H, Jafari M, ..., Saei AA, Zubarev R
- - (-) - [2025-03-13; online 2025-03-13]
Chemical Proteomics [Technology development]
PubMed DOI Crossref
Genetic liability for anxiety and treatment response to the monoamine stabilizer OSU6162 in alcohol dependence: a retrospective secondary analysis.
Hong MG, Khemiri L, Guterstam J, ..., Jayaram-Lindström N, Melas PA
Pharmacol Rep - (-) - [2025-03-12; online 2025-03-12]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A clinical prostate biopsy dataset with undetected cancer.
Chelebian E, Avenel C, Järemo H, ..., Wählby C, Bergh A
Sci Data 12 (1) 423 [2025-03-11; online 2025-03-11]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
Historic manioc genomes illuminate maintenance of diversity under long-lived clonal cultivation.
Kistler L, de Oliveira Freitas F, Gutaker RM, ..., Capriles JM, Allaby RG
Science 387 (6738) eadq0018 [2025-03-07; online 2025-03-07]
Ancient DNA [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) National Genomics Infrastructure [Service]
PubMed DOI Crossref
Continuous map of early hematopoietic stem cell differentiation across human lifetime.
Komic H, Schmachtel T, Simoes C, ..., Thorén FB, Rieger MA
Nat Commun 16 (1) 2287 [2025-03-07; online 2025-03-07]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Systems-level immunomonitoring in children with solid tumors to enable precision medicine.
Chen Q, Zhao B, Tan Z, ..., Ljungblad L, Brodin P
Cell 188 (5) 1425-1440.e11 [2025-03-06; online 2025-01-20]
Affinity Proteomics Stockholm [Service] Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic Origins of the Kiritimati Population from Central-Eastern Micronesia.
Larena M, Chowdhury AE, Kels MJT, ..., Garcia-Bertrand R, Herrera RJ
Genome Biol Evol 17 (3) - [2025-03-06; online 2025-03-11]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Fungal Pathogens Associated with Tomicus Species in European Forests: Regional Variations and Impacts on Forest Health.
Davydenko K, Baturkin D, Dyshko V, ..., Vasaitis R, Menkis A
Insects 16 (3) - [2025-03-06; online 2025-03-06]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic characterization of the HER2-enriched intrinsic molecular subtype in primary ER-positive HER2-negative breast cancer.
Hohmann L, Sigurjonsdottir K, Campos AB, ..., Nik-Zainal S, Staaf J
Nat Commun 16 (1) 2208 [2025-03-05; online 2025-03-05]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Antisense-mediated regulation of exon usage in the elastic spring region of Titin modulates sarcomere function.
Celik S, Hyrefelt L, Czuba T, ..., Smith JG, Gidlöf O
Cardiovasc. Res. - (-) - [2025-03-05; online 2025-03-05]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
PopGLen-a Snakemake pipeline for performing population genomic analyses using genotype likelihood-based methods.
Nolen ZJ
Bioinformatics 41 (3) - [2025-03-04; online 2025-03-12]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Unraveling the role of early coeliac disease diagnosis in the risk of developing immune-mediated renal diseases.
De Luca F, Nilsson S, Truvé K, ..., Haraldsson B, Torinsson Naluai Å
BMC Gastroenterol 25 (1) 125 [2025-03-03; online 2025-03-03]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Influence of apolipoprotein E genotype on the proteomic profile in cerebral microdialysis after human severe traumatic brain injury: a prospective observational study.
Lindblad C, Klang A, Bark D, ..., Lewén A, Rostami E
Brain Commun 7 (2) fcaf096 [2025-03-03; online 2025-03-03]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Genome-wide association study and Mendelian randomization analyses reveal insights into bladder cancer etiology.
Larsson SC, Chen J, Ruan X, Li X, Yuan S
JNCI Cancer Spectr 9 (2) - [2025-03-03; online 2025-02-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Decreased levels and function of dendritic cells in blood and airways predict COVID-19 severity.
Österberg B, Falck-Jones S, Vangeti S, ..., Färnert A, Smed-Sörensen A
Clin Transl Immunology 14 (3) e70026 [2025-03-03; online 2025-03-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Applying machine learning to high-dimensional proteomics datasets for the identification of Alzheimer's disease biomarkers.
Ivarsson Orrelid C, Rosberg O, Weiner S, ..., Mwai N, Stempfle L
Fluids Barriers CNS 22 (1) 23 [2025-03-03; online 2025-03-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Indole-3-propionic acid promotes hepatic stellate cells inactivation.
Ilha M, Sehgal R, Matilainen J, ..., Vaittinen M, Pihlajamäki J
J Transl Med 23 (1) 253 [2025-03-01; online 2025-03-01]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Blood-Based Epigenetic Biomarkers Associated With Incident Chronic Kidney Disease in Individuals With Type 2 Diabetes.
Marchiori M, Maguolo A, Perfilyev A, ..., García-Calzón S, Ling C
Diabetes 74 (3) 439-450 [2025-03-01; online 2024-12-23]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Time-Resolved Hierarchical Modeling Highlights Metabolites Influencing Productivity and Cell Death in Chinese Hamster Ovary Cells.
Eriksson A, Richelle A, Trygg J, ..., Surowiec I, Jonsson P
Biotechnol J 20 (3) e202400624 [2025-03-00; online 2025-03-11]
Swedish Metabolomics Centre [Service] Swedish NMR Centre [Service]
PubMed DOI Crossref
The Federated European Genome-Phenome Archive as a global network for sharing human genomics data.
D'Altri T, Freeberg MA, Curwin AJ, ..., Rambla J, Keane TM
Nat. Genet. 57 (3) 481-485 [2025-03-00; online 2025-03-04]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Structure of the MUC5AC VWD3 assembly responsible for the formation of net-like mucin polymers.
Trillo-Muyo S, Ermund A, Hansson GC
EMBO Rep. 26 (6) 1457-1471 [2025-03-00; online 2025-02-27]
Cryo-EM [Service]
PubMed DOI Crossref
Structural Variants in COL1A1 and COL1A2 in Osteogenesis Imperfecta.
Batkovskyte D, Swolin-Eide D, Hammarsjö A, ..., Åström E, Grigelioniene G
Am. J. Med. Genet. A 197 (3) e63935 [2025-03-00; online 2024-11-08]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Somatic CAG repeat expansion in blood associates with biomarkers of neurodegeneration in Huntington's disease decades before clinical motor diagnosis.
Scahill RI, Farag M, Murphy MJ, ..., Langbehn DR, Tabrizi SJ
Nat. Med. 31 (3) 807-818 [2025-03-00; online 2025-01-17]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Single drop turbulent breakup in the anisotropic turbulence inside a high-pressure homogenizer scale-up model
Olad P, Håkansson A
International Journal of Multiphase Flow 184 (-) 105077 [2025-03-00; online 2025-03-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Plasma Alkylresorcinols Is an Objective Biomarker for Gluten Intake in Young Children.
Af Segerstad EMH, Ericson-Hallström E, Bokström A, ..., Savolainen O, Andrén Aronsson C
J. Nutr. 155 (3) 985-993 [2025-03-00; online 2025-01-27]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Modeling of Disease Progression of Type 2 Diabetes Using Real-World Data: Quantifying Competing Risks of Morbidity and Mortality.
Kunina H, Franzén S, Kjellsson MC
CPT Pharmacometrics Syst Pharmacol 14 (3) 606-615 [2025-03-00; online 2025-01-17]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Mild-to-moderate psoriasis is associated with subclinical inflammation in the duodenum and a tendency of disturbed intestinal barrier.
Lundquist P, Hagforsen E, Wagner M, ..., Rollman O, Lampinen M
Biochim Biophys Acta Mol Basis Dis 1871 (3) 167634 [2025-03-00; online 2024-12-19]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
In-Depth Analysis of Disease Manifestations in Antineutrophil Cytoplasmic Antibody-Associated Vasculitides Identifies Distinct Clinical Phenotypes.
Lindberg H, Knight A, Hellbacher E, ..., Rantapää-Dahlqvist S, Dahlqvist J
ACR Open Rheumatol 7 (3) e70009 [2025-03-00; online 2025-03-04]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Importance of individual residues in hydrophobic patch PLVIVGL (1481-1487) in FV-Short for synergistic TFPIα cofactor activity with protein S, an alanine-scanning study: AlphaFold-mediated prediction of FV-Short/TFPIα/protein S trimolecular complex structure.
Dahlbäck B, Tran S, Draczkowski P
J. Thromb. Haemost. 23 (3) 849-862 [2025-03-00; online 2024-11-29]
Cryo-EM [Collaborative]
PubMed DOI Crossref
Genomic prediction of bone strength in laying hens using different sources of information.
Sallam M, Wall H, Wilson PW, ..., de Koning DJ, Johnsson M
Animal 19 (3) 101452 [2025-03-00; online 2025-02-05]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Genome Sequence Resources from Three Isolates of the Apple Canker Pathogen Neonectria ditissima Infecting Forest Trees
Bourras S, Vélëz H, Ihrmark K, ..., Garkava-Gustavsson L, Falk KD
PhytoFrontiers™ 5 (1) 117-119 [2025-03-00; online 2025-03-00]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Effect of broccoli sprout extract and baseline gut microbiota on fasting blood glucose in prediabetes: a randomized, placebo-controlled trial.
Dwibedi C, Axelsson AS, Abrahamsson B, ..., Bäckhed F, Rosengren AH
Nat Microbiol 10 (3) 681-693 [2025-03-00; online 2025-02-10]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Discovery of Cis-Regulatory Mechanisms via Non-Coding Mutations in Acute Lymphoblastic Leukemia.
Aydın E, Woodward EL, Dushime GT, ..., Paulsson K, Yang M
Genes Chromosomes Cancer 64 (3) e70045 [2025-03-00; online 2025-03-27]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Comparative gene expression pattern of immune-related genes using dual-color RT-MLPA in the lesions of cutaneous leishmaniasis caused by L. major and L. tropica.
Masoudzadeh N, Ait Kbaich M, van Veen S, ..., Lemrani M, Rafati S
PLoS Negl Trop Dis 19 (3) e0012812 [2025-03-00; online 2025-03-18]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Commonly prescribed multi-medication therapies exert sex-specific effects on Alzheimer's disease pathology and metabolomic profiles in AppNL-G-F mice: Implications for personalized therapeutics in aging.
Eroli F, Johnell K, Acararicin Z, ..., Cedazo-Minguez A, Maioli S
Alzheimers Dement 21 (3) e70081 [2025-03-00; online 2025-03-27]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Closed and open structures of the eukaryotic magnesium channel Mrs2 reveal the auto-ligand-gating regulation mechanism.
Li P, Liu S, Wallerstein J, ..., Liin SI, Gourdon P
Nat. Struct. Mol. Biol. 32 (3) 491-501 [2025-03-00; online 2024-11-28]
Cryo-EM [Service]
PubMed DOI Crossref
Cardio-metabolic-related plasma proteins reveal biological links between cardiovascular diseases and fragility fractures: a cohort and Mendelian randomisation investigation.
Michaëlsson K, Zheng R, Baron JA, ..., Byberg L, Brooke HL
EBioMedicine 113 (-) 105580 [2025-03-00; online 2025-02-06]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Ultra-Sensitive Detection of Bacterial Spores via SERS.
Segervald J, Malyshev D, Öberg R, ..., Wågberg T, Andersson M
ACS Sens. 10 (2) 1237-1248 [2025-02-28; online 2025-01-23]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Therapeutic Potential of STE20-Type Kinase STK25 Inhibition for the Prevention and Treatment of Metabolically Induced Hepatocellular Carcinoma.
Xia Y, Caputo M, Andersson E, ..., Murray S, Mahlapuu M
Cellular and Molecular Gastroenterology and Hepatology 19 (7) 101485 [2025-02-28; online 2025-02-28]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
Human adaptation in the Andes Mountains
De Loma J, Vicente M, Tirado N, ..., Schlebusch C, Broberg K
Hum Popul Genet Genom - (-) - [2025-02-28; online 2025-02-28]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Characterization and description of Clostridium filamentum ETTB, a novel gut bacterium with TLR5 modulating properties
Makki K, Martino ME, Alberdi A, ..., Tremaroli V, Bäckhed F
- - (-) - [2025-02-28; online 2025-02-28]
Bioinformatics Support for Computational Resources [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis.
Christmas MJ, Dong MX, Meadows JRS, Kozyrev SV, Lindblad-Toh K
Nat Commun 16 (1) 2007 [2025-02-27; online 2025-02-27]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Detection and genetic characterization of equine viruses in Sweden using viral metagenomics.
Blomström AL, Källse A, Riihimäki M
BMC Vet Res 21 (1) 119 [2025-02-27; online 2025-02-27]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Comprehensive genetic variant analysis reveals combination of KRAS and LRP1B as a predictive biomarker of response to immunotherapy in patients with non-small cell lung cancer.
Eklund EA, Svensson J, Näslund LS, ..., Raghavan S, Rohlin A
J. Exp. Clin. Cancer Res. 44 (1) 75 [2025-02-27; online 2025-02-27]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening.
Vaivade A, Erngren I, Carlsson H, ..., Burman J, Kultima K
Nat Commun 16 (1) 2014 [2025-02-27; online 2025-02-27]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Yellow barley xan-m mutants are deficient in the motor unit SECA1 of the SEC1 translocase system.
Stuart D, Ivanova A, Zakhrabekova S, Hansson M
Planta 261 (4) 68 [2025-02-26; online 2025-02-26]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Single-cell analysis of aplastic anemia reveals a convergence of NK and NK-like CD8+ T cells with a disease-associated TCR signature.
Lundgren S, Huuhtanen J, Keränen M, ..., Lähdesmäki H, Mustjoki S
Sci Transl Med 17 (787) eadl6758 [2025-02-26; online 2025-02-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Lithography-Free Water Stable Conductive Polymer Nanowires
Hughes D, Mousa AH, Musumeci C, ..., Olsson R, Hjort M
Nano Lett. 25 (8) 3059-3065 [2025-02-26; online 2025-02-13]
Chemical Biology Consortium Sweden [Technology development]
PubMed DOI Crossref
Duplexed CeTEAM drug biosensors reveal determinants of PARP inhibitor selectivity in cells.
Pires MJ, Alam S, Lovric A, ..., Altun M, Valerie NCK
J. Biol. Chem. - (-) 108361 [2025-02-26; online 2025-02-26]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Structure of the T=13 capsid of infectious pancreatic necrosis virus (IPNV)-a salmonid birnavirus.
Munke A, Ahmed Abdelrahim Gamil A, Mikalsen AB, ..., Evensen Ø, Okamoto K
J. Virol. 99 (2) e0145424 [2025-02-25; online 2025-01-16]
Cryo-EM [Service]
PubMed DOI Crossref
Digital sequencing is improved by using structured unique molecular identifiers.
Micallef P, Santamaría ML, Escobar M, ..., Vannas C, Ståhlberg A
Genome Biol. 26 (1) 37 [2025-02-25; online 2025-02-25]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
DNA methylation patterns contribute to changes of cellular differentiation pathways in leukocytes with LOY from patients with Alzheimer´s disease.
Jąkalski M, Bruhn-Olszewska B, Rychlicka-Buniowska E, ..., Ingelsson M, Dumanski JP
Cell. Mol. Life Sci. 82 (1) 93 [2025-02-25; online 2025-02-25]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Aberrant growth and expansion in Penium margaritaceum triggered by disruption of microtubules and the cell wall.
LoRicco JG, Malone S, Becker A, ..., Epstein R, Domozych DS
J. Exp. Bot. 76 (4) 961-979 [2025-02-25; online 2024-09-13]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
A long-distance inhibitory system regulates haustoria numbers in parasitic plants.
Kokla A, Leso M, Šimura J, ..., Ljung K, Melnyk CW
Proc. Natl. Acad. Sci. U.S.A. 122 (8) e2424557122 [2025-02-25; online 2025-02-18]
Swedish Metabolomics Centre [Service]
DOI Crossref
Lessons learnt from strain types, milking order, and mastitis pathogen transmission
Woudstra S, Gussmann MK, Marina H, ..., Ren K, Rönnegård L
Front. Anim. Sci. 6 (-) - [2025-02-24; online 2025-02-24]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Dissecting the properties of circulating IgG against streptococcal pathogens through a combined systems antigenomics-serology workflow
Gomez Toledo A, Chowdhury S, Hjortswang E, ..., Rasmussen M, Malmström J
Nat Commun 16 (1) - [2025-02-24; online 2025-02-24]
Structural Proteomics [Collaborative]
PubMed DOI Crossref
Phage parasites targeting phage homologous recombinases provide antiviral immunity.
Debiasi-Anders G, Qiao C, Salim A, Li N, Mir-Sanchis I
Nat Commun 16 (1) 1889 [2025-02-22; online 2025-02-22]
Cryo-EM [Service]
PubMed DOI Crossref
Insights into metabolic changes during epidermal differentiation as revealed by multiphoton microscopy with fluorescence lifetime imaging.
Malak M, Qian C, James J, ..., Grantham J, Ericson MB
Sci Rep 15 (1) 6377 [2025-02-21; online 2025-02-21]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Comprehensive Gene Expression Analysis in Papillary Thyroid Carcinoma Reveals a Transcriptional Profile Associated with Reduced Radioiodine Avidity.
Condello V, Marchettini C, Ihre-Lundgren C, Nilsson JN, Juhlin CC
Endocr. Pathol. 36 (1) 4 [2025-02-21; online 2025-02-21]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The beneficial effects of a probiotic mix on bone and lean mass are dependent on the diet in female mice.
Ohlsson C, Lawenius L, Jiang Y, ..., Henning P, Sjögren K
Sci Rep 15 (1) 6182 [2025-02-20; online 2025-02-20]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
DOI Crossref
Structural basis of ATP release and ion selectivity in Pannexin1 channels
Zhang Q, Wang J, Gaullier G, ..., Barro-Soria R, Mim C
- - (-) - [2025-02-20; online 2025-02-20]
Cryo-EM [Service]
PubMed DOI Crossref
Ancient DNA HLA typing reveals significant shifts in frequency in Europe since the Neolithic.
Plascencia AG, Jakobsson M, Sánchez-Quinto F
Sci Rep 15 (1) 6161 [2025-02-20; online 2025-02-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Age-Dependent Pleomorphism in Mycobacterium monacense Cultures.
Ramesh M, Behra PRK, Pettersson BMF, Dasgupta S, Kirsebom LA
Microorganisms 13 (3) - [2025-02-20; online 2025-02-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Toward target 2035: EUbOPEN - a public-private partnership to enable & unlock biology in the open.
Tredup C, Ackloo S, Beck H, ..., Arrowsmith CH, Knapp S
RSC Med Chem 16 (2) 457-464 [2025-02-19; online 2024-11-29]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Temporal dynamics of airborne fungi in Swedish forest nurseries.
Larsson R, Menkis A, Olson Å
Appl. Environ. Microbiol. 91 (2) e0130624 [2025-02-19; online 2025-01-16]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Measuring plasma membrane fluidity using confocal microscopy.
Carravilla P, Andronico L, Schlegel J, ..., Lorent J, Sezgin E
Nat Protoc - (-) - [2025-02-19; online 2025-02-19]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Virtual fragment screening for DNA repair inhibitors in vast chemical space.
Luttens A, Vo DD, Scaletti ER, ..., Helleday T, Carlsson J
Nat Commun 16 (1) 1741 [2025-02-18; online 2025-02-18]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Impact of glucose and propionic acid on even and odd chain fatty acid profiles of oleaginous yeasts.
Bonzanini V, Haddad Momeni M, Olofsson K, Olsson L, Geijer C
BMC Microbiol. 25 (1) 79 [2025-02-18; online 2025-02-18]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Circular RNA circASH1L(4,5) protects microRNA-129-5p from target-directed microRNA degradation in human skin wound healing.
Wang Q, Niu G, Liu Z, ..., Sommar P, Xu Landén N
Br J Dermatol 192 (3) 468-480 [2025-02-18; online 2024-10-18]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
An Evolutionary Mosaic Challenges Traditional Monitoring of a Foundation Species in a Coastal Environment-The Baltic Fucus vesiculosus.
Pereyra RT, Kinnby A, Le Moan A, ..., Knutsen H, Johannesson K
Mol. Ecol. - (-) e17699 [2025-02-17; online 2025-02-17]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Microbial communities in slow sand filters for drinking water treatment adapt to organic matter altered by ozonation.
Rosenqvist T, Hilding J, Suarez C, Paul CJ
Water Res. 270 (-) 122843 [2025-02-15; online 2024-11-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Methodological aspects of investigating the resistome in pig farm environments.
Ladyhina V, Rajala E, Sternberg-Lewerin S, ..., Bongcam-Rudloff E, Dicksved J
J Microbiol Methods 230-231 (-) 107103 [2025-02-13; online 2025-02-13]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Functionally characterizing obesity-susceptibility genes using CRISPR/Cas9, in vivo imaging and deep learning.
Mazzaferro E, Mujica E, Zhang H, ..., Allalou A, den Hoed M
Sci Rep 15 (1) 5408 [2025-02-13; online 2025-02-13]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chloroplast genomic insights into adaptive evolution and rapid radiation in the genus Passiflora (Passifloraceae).
Cauz-Santos LA, da Costa ZP, Sader MA, van den Berg C, Vieira MLC
BMC Plant Biol. 25 (1) 192 [2025-02-13; online 2025-02-13]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Imaging Single Particle Profiler to Study Nanoscale Bioparticles Using Conventional Confocal Microscopy.
Sych T, Görgens A, Steiner L, ..., El Andaloussi S, Sezgin E
Nano Lett. 25 (6) 2173-2180 [2025-02-12; online 2025-01-29]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration.
Brown T, Mishra K, Elewa A, ..., Yun MH, Simon A
Cell Genomics 5 (2) 100761 [2025-02-12; online 2025-01-27]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Rare and common single nucleotide variants in childhood-onset systemic lupus erythematosus.
Sayadi A, Sandling JK, Eloranta ML, ..., Rönnblom L, DISSECT Consortium
Lupus Sci Med 12 (1) - [2025-02-11; online 2025-02-11]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats.
Yang H, Zhang C, Kim W, ..., Turkez H, Mardinoglu A
Elife 13 (-) - [2025-02-11; online 2025-02-11]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
MUC5B modulation of early oral biofilm glucose metabolism
Robertsson C, Davies J, Svensäter G, ..., Norrström N, Wickström C
Front Oral Health 6 (-) - [2025-02-11; online 2025-02-11]
Swedish NMR Centre [Collaborative]
PubMed DOI Crossref
Human MAIT cell response profiles biased toward IL-17 or IL-10 are distinct effector states directed by the cytokine milieu.
Boulouis C, Mouchtaridi E, Müller TR, ..., Buggert M, Sandberg JK
Proc. Natl. Acad. Sci. U.S.A. 122 (6) e2414230122 [2025-02-11; online 2025-02-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Epitope Mapping with Sidewinder: An XL-MS and Structural Modeling Approach.
Ströbaek J, Tang D, Gueto-Tettay C, ..., Malmström J, Malmström L
Int J Mol Sci 26 (4) - [2025-02-11; online 2025-02-11]
Structural Proteomics [Service]
PubMed DOI Crossref
A Phylogenomic Backbone for Acoelomorpha Inferred From Transcriptomic Data.
Abalde S, Jondelius U
Syst. Biol. 74 (1) 70-85 [2025-02-10; online 2024-10-25]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
High-content morphological profiling by Cell Painting in 3D spheroids
Ringers C, Holmberg D, Flobak Å, ..., Carreras Puigvert J, Spjuth O
- - (-) - [2025-02-08; online 2025-02-08]
Chemical Biology Consortium Sweden [Technology development]
PubMed DOI Crossref
Characterization of the genomic landscape of canine diffuse large B-cell lymphoma reveals recurrent H3K27M mutations linked to progression-free survival.
van der Heiden AD, Pensch R, Agger S, ..., Lindblad-Toh K, Arendt ML
Sci Rep 15 (1) 4724 [2025-02-08; online 2025-02-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
In vivo regulation of the monocyte phenotype by Mycobacterium marinum and the ESX-1 type VII secretion system.
Munke K, Wulff L, Lienard J, Carlsson F, Agace WW
Sci Rep 15 (1) 4545 [2025-02-07; online 2025-02-07]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
TGF-β induces cholesterol accumulation to regulate the secretion of tumor-derived extracellular vesicles.
Rodrigues-Junior DM, Tsirigoti C, Psatha K, ..., Heldin CH, Moustakas A
J. Exp. Clin. Cancer Res. 44 (1) 42 [2025-02-06; online 2025-02-06]
Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
Population history and admixture of the Fulani people from the Sahel.
Fortes-Lima CA, Diallo MY, Janoušek V, Černý V, Schlebusch CM
Am. J. Hum. Genet. 112 (2) 261-275 [2025-02-06; online 2025-02-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Whole genome sequencing in early onset advanced heart failure.
Linnér E, Czuba T, Gidlöf O, ..., Ehrencrona H, Smith JG
Sci Rep 15 (1) 4306 [2025-02-05; online 2025-02-05]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Testosterone exacerbates neutrophilia and cardiac injury in myocardial infarction via actions in bone marrow.
Svedlund Eriksson E, Lantero Rodriguez M, Halvorsen B, ..., Dahl TB, Tivesten Å
Nat Commun 16 (1) 1142 [2025-02-05; online 2025-02-05]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
Intranasal Delivery of a Ghrelin Mimetic Engages the Brain Ghrelin Signaling System in Mice.
Poelman R, Le May MV, Schéle E, Stoltenborg I, Dickson SL
Endocrinology 166 (3) - [2025-02-05; online 2025-01-15]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
In silico classification and identification co-purified protein complexes yield new structures and multiple MSP assembly states
Zhang Q, Murthy AV, Mim C
- - (-) - [2025-02-04; online 2025-02-04]
Cryo-EM [Service]
PubMed DOI Crossref
The auxin phenylacetic acid induces NIN expression in the actinorhizal plant Datisca glomerata, whereas cytokinin acts antagonistically.
Salgado MG, Maity PJ, Lundin D, Pawlowski K
PLoS ONE 20 (2) e0315798 [2025-02-03; online 2025-02-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Reducing methane emissions by developing low-fumarate high-ethanol eco-friendly rice.
Jin Y, Liu T, Hu J, ..., Schnürer A, Sun C
Mol Plant 18 (2) 333-349 [2025-02-03; online 2025-02-05]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Evolution of Hybrid Inviability Associated With Chromosome Fusions.
Boman J, Näsvall K, Vila R, Wiklund C, Backström N
Mol. Ecol. - (-) e17672 [2025-02-03; online 2025-02-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dissociable genetic influences on eye movements during abstract versus naturalistic social scene viewing in infancy.
Portugal AM, Taylor MJ, Tammimies K, Ronald A, Falck-Ytter T
Sci Rep 15 (1) 4100 [2025-02-03; online 2025-02-03]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The expanded genome of Hexamita inflata, a free-living diplomonad.
Akdeniz Z, Havelka M, Stoklasa M, ..., Andersson JO, Tachezy J
Sci Data 12 (1) 192 [2025-02-01; online 2025-02-01]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Using the long-term genetic monitoring network ARMS-MBON to detect marine non-indigenous species along the European coasts
Pagnier J, Daraghmeh N, Obst M
Biol Invasions 27 (2) - [2025-02-00; online 2025-02-01]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Unravelling the dominant role of phosphorylation degree in governing the functionality of reassembled casein micelles: Implications for future dairy production through precision fermentation
Che J, Fan Z, Bijl E, ..., Poulsen NA, Larsen LB
Food Hydrocolloids 159 (-) 110615 [2025-02-00; online 2025-02-00]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Unraveling the Genetics of Shared Clinical and Serological Manifestations in Patients With Systemic Inflammatory Autoimmune Diseases.
Bianchi M, Kozyrev SV, Notarnicola A, ..., Lindblad-Toh K, with the DISSECT consortium and the ImmunoArray consortium
Arthritis & rheumatology (Hoboken, N.J.) 77 (2) 212-225 [2025-02-00; online 2024-10-25]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The structure of FCGBP is formed as a disulfide-mediated homodimer between its C-terminal domains.
Ehrencrona E, Gallego P, Trillo-Muyo S, ..., Hansson GC, Johansson MEV
FEBS J. 292 (3) 582-601 [2025-02-00; online 2025-01-03]
Cryo-EM [Service]
DOI Crossref
Single cell sequencing reveals shared clonal signatures in non-malignant B- and tumor cells in T-prolymphocytic leukemia
Hesselager C, Thörn I, Marincevic M, ..., Baliakas P, Amini RM
Blood Neoplasia - (-) 100076 [2025-02-00; online 2025-02-00]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Robust approach for production of the human oncology target Aurora kinase B in complex with its binding partner INCENP.
Mattsson J, Rogne P, Landström M, Wolf-Watz M
Biochimie 229 (-) 129-140 [2025-02-00; online 2024-10-18]
Swedish NMR Centre [Service]
PubMed DOI Crossref
Reduced Alcohol Consumption Following Ablation of Cholinergic Interneurons in the Nucleus Accumbens of Wistar Rats.
Loftén A, Cadeddu D, Danielsson K, ..., Söderpalm B, Ericson M
Addict Biol 30 (2) e70022 [2025-02-00; online 2025-02-12]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
RNA Sequencing Reveals the Long Non-Coding RNA Signature in Psoriasis Keratinocytes and Identifies CYDAER as a Long Non-Coding RNA Regulating Epidermal Differentiation.
Freisenhausen JC, Luo L, Kelemen E, ..., Pivarcsi A, Sonkoly E
Exp. Dermatol. 34 (2) e70054 [2025-02-00; online 2025-02-15]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Pulmonary exposure to renewable diesel exhaust particles alters protein expression and toxicity profiles in bronchoalveolar lavage fluid and plasma of mice.
McCarrick S, Malmborg V, Gren L, ..., Vogel U, Gliga AR
Arch. Toxicol. 99 (2) 797-814 [2025-02-00; online 2024-12-29]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Plasma brain-derived tau correlates with cerebral infarct volume.
Gonzalez-Ortiz F, Holmegaard L, Andersson B, ..., Jern C, Stanne TM
J. Intern. Med. 297 (2) 173-185 [2025-02-00; online 2024-12-05]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Phospho-tau serine-262 and serine-356 as biomarkers of pre-tangle soluble tau assemblies in Alzheimer's disease.
Islam T, Hill E, Abrahamson EE, ..., Blennow K, Karikari TK
Nat. Med. 31 (2) 574-588 [2025-02-00; online 2025-02-10]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Parasite spillover rather than niche expansion explains infection of host brain by diplostomid eye flukes.
Diaz-Suarez A, Kisand V, Kahar S, ..., Vasemägi A, Noreikiene K
Proc. Biol. Sci. 292 (2040) 20242648 [2025-02-00; online 2025-02-05]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Pain in idiopathic scoliosis not associated with known genetic variants for pain.
Cheng T, Diarbakerli E, Simony A, ..., Einarsdottir E, Gerdhem P
Pain Rep 10 (1) e1227 [2025-02-00; online 2024-12-19]
Bioinformatics (NBIS) Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Navigating the maze of mass spectra: a machine-learning guide to identifying diagnostic ions in O-glycan analysis.
Urban J, Joeres R, Thomès L, Thomsson KA, Bojar D
Anal Bioanal Chem 417 (5) 931-943 [2025-02-00; online 2024-08-24]
Glycoproteomics and MS Proteomics [Collaborative]
DOI Crossref
Modelling age at death reveals Nordic Corded Ware paleodemography
Tornberg A, Vandkilde H
Archaeol Anthropol Sci 17 (2) - [2025-02-00; online 2025-01-20]
Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Meat intake in relation to composition and function of gut microbiota.
Larsson SC, Ericson U, Dekkers KF, ..., Fall T, Ahmad S
Clin Nutr 45 (-) 124-133 [2025-02-00; online 2025-01-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Isotope geolocation and population genomics in Vanessa cardui: Short- and long-distance migrants are genetically undifferentiated.
Reich MS, Shipilina D, Talla V, ..., Talavera G, Bataille CP
PNAS Nexus 4 (2) pgae586 [2025-02-00; online 2025-02-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Impact of plant diversity in potato-ley strip-cropping systems on soil microbial communities
Riggi LGA, Ranheim Sveen T, Castaño C, ..., Clemmensen KE, Bahram M
Applied Soil Ecology 206 (-) 105777 [2025-02-00; online 2025-02-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Impact of excess sugar on the whole genome DNA methylation pattern in human sperm.
Jönsson J, Perfilyev A, Kugelberg U, ..., Öst A, Ling C
Epigenomics 17 (2) 89-104 [2025-02-00; online 2024-12-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic insights into psychotic major depressive disorder: bridging the mood-psychotic disorder spectrum.
Nguyen TD, Meijsen JJ, Sigström R, ..., Sullivan PF, Lu Y
EBioMedicine 112 (-) 105576 [2025-02-00; online 2025-01-30]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Field-based soil extractions capture more amino acids that are lost during short-term storage
Buckley S, Jämtgård S
Geoderma 454 (-) 117163 [2025-02-00; online 2025-02-00]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
Extracellular Histones as Exosome Membrane Proteins Regulated by Cell Stress.
Singh B, Fredriksson Sundbom M, Muthukrishnan U, ..., Haney M, Gilthorpe JD
J Extracell Vesicles 14 (2) e70042 [2025-02-00; online 2025-02-20]
Cryo-EM [Collaborative] Integrated Microscopy Technologies Umeå [Collaborative]
PubMed DOI Crossref
Evolved and Plastic Gene Expression in Adaptation of a Specialist Fly to a Novel Niche.
Steward RA, Ortega Giménez J, Choudhary S, ..., Van Aken O, Runemark A
Mol. Ecol. 34 (4) e17653 [2025-02-00; online 2025-01-09]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Epigenetic suppression of creatine kinase B in adipocytes links endoplasmic reticulum stress to obesity-associated inflammation.
Renzi G, Vlassakev I, Hansen M, ..., Mejhert N, Rydén M
Mol Metab 92 (-) 102082 [2025-02-00; online 2024-12-13]
Swedish Metabolomics Centre [Collaborative]
PubMed DOI Crossref
Earliest modern human genomes constrain timing of Neanderthal admixture.
Sümer AP, Rougier H, Villalba-Mouco V, ..., Prüfer K, Krause J
Nature 638 (8051) 711-717 [2025-02-00; online 2024-12-12]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
DMI fungicide resistance in Zymoseptoria tritici is unlinked to geographical origin and genetic background: a case study in Europe.
Oreiro EG, Samils B, Kildea S, ..., Zhan J, Andersson B
Pest Manag Sci 81 (2) 1103-1112 [2025-02-00; online 2024-11-06]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Combining observational and experimental data to estimate environmental and species drivers of fungal metacommunity dynamics.
Nenzén HK, Moor H, O'Hara RB, ..., Ottosson E, Snäll T
Ecology 106 (2) e70014 [2025-02-00; online 2025-02-07]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder.
Verrecchia L, Alm V, Thonberg H, ..., Nilsson D, Paucar M
Neurol Genet 11 (1) e200238 [2025-02-00; online 2025-01-16]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
1H-19F cross-polarization magic angle spinning dynamic nuclear polarization NMR investigation of advanced pharmaceutical formulations.
Šoltésová M, Pinon AC, Aussenac F, ..., Emsley L, Schantz S
J Magn Reson 371 (-) 107827 [2025-02-00; online 2024-12-27]
Swedish NMR Centre [Technology development]
PubMed DOI Crossref
Extracellular vesicle surface engineering with integrins (ITGAL & ITGB2) to specifically target ICAM-1-expressing endothelial cells.
Bergqvist M, Park KS, Karimi N, ..., Lässer C, Lötvall J
J Nanobiotechnology 23 (1) 64 [2025-01-30; online 2025-01-30]
Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Diffusion Smart-seq3 of breast cancer spheroids to explore spatial tumor biology and test evolutionary principles of tumor heterogeneity.
Cougnoux A, Mahmoud L, Johnsson PA, ..., Sandberg R, Hausser J
Sci Rep 15 (1) 3811 [2025-01-30; online 2025-01-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Modulation of biological activities in adipose derived stem cells by histone deacetylation.
Abdallah S, Tabebi M, Qanadilo S, ..., Elmasry M, El-Serafi A
Sci Rep 15 (1) 3629 [2025-01-29; online 2025-01-29]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
The di-leucine motif in the host defense peptide LL-37 is essential for initiation of autophagy in human macrophages.
Rekha RS, Padhi A, Frengen N, ..., Guðmundsson GH, Bergman P
Cell Rep 44 (1) 115031 [2025-01-28; online 2024-12-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Lack of ST2 aggravates glioma invasiveness, vascular abnormality, and immune suppression.
Wicher G, Roy A, Vaccaro A, ..., Dimberg A, Forsberg-Nilsson K
Neurooncol Adv 7 (1) vdaf010 [2025-01-27; online 2025-01-27]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Association between alcohol consumption and peripheral artery disease: two de novo prospective cohorts and a systematic review with meta-analysis.
Yuan S, Wu J, Chen J, ..., Åkesson A, Larsson SC
Eur J Prev Cardiol 32 (2) 149-155 [2025-01-27; online 2024-04-16]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Exploring a pico-well based scRNA-seq method (HIVE) for simplified processing of equine bronchoalveolar lavage cells.
Fegraeus K, Riihimäki M, Nordlund J, ..., Wernersson S, Raine A
PLoS ONE 20 (1) e0317343 [2025-01-24; online 2025-01-24]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Technology development]
PubMed DOI Crossref
Precise and interpretable neural networks reveal epigenetic signatures of aging across youth in health and disease.
Martínez-Enguita D, Hillerton T, Åkesson J, ..., Lerm M, Gustafsson M
Front Aging 5 (-) 1526146 [2025-01-23; online 2025-01-23]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
A de novo, mosaic and complex chromosome 21 rearrangement causes APP triplication and familial autosomal dominant early onset Alzheimer disease.
Ehn E, Eisfeldt J, Laffita-Mesa JM, ..., Nennesmo I, Graff C
Sci Rep 15 (1) 2912 [2025-01-23; online 2025-01-23]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comprehensive Approach for Sequential MALDI-MSI Analysis of Lipids, N-Glycans, and Peptides in Fresh-Frozen Rodent Brain Tissues.
Lee YR, Kaya I, Wik E, ..., Svenningsson P, Andrén PE
Anal. Chem. 97 (2) 1338-1346 [2025-01-21; online 2025-01-09]
Spatial Mass Spectrometry [Technology development]
PubMed DOI Crossref
Visualization using NIPTviewer support the clinical interpretation of noninvasive prenatal testing results.
Smeds P, Baranowska Körberg I, Melin M, Ladenvall C
BMC Med Genomics 18 (1) 15 [2025-01-20; online 2025-01-20]
Clinical Genomics [Technology development] Clinical Genomics Uppsala [Technology development]
PubMed DOI Crossref
Numerous rRNA molecules form the apicomplexan mitoribosome via repurposed protein and RNA elements.
Shikha S, Tobiasson V, Ferreira Silva M, ..., Mühleip A, Sheiner L
Nat Commun 16 (1) 817 [2025-01-18; online 2025-01-18]
Cryo-EM [Service]
PubMed DOI Crossref
Life-history adaptation under climate warming magnifies the agricultural footprint of a cosmopolitan insect pest.
Burc E, Girard-Tercieux C, Metz M, ..., Hart AF, Berger D
Nat Commun 16 (1) 827 [2025-01-18; online 2025-01-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Anti-correlation of LacI association and dissociation rates observed in living cells.
Kandavalli V, Zikrin S, Elf J, Jones D
Nat Commun 16 (1) 764 [2025-01-17; online 2025-01-17]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
A two-wave survey study examining the impact of different sources of pregnancy information on pregnancy-related anxiety among Swedish women.
Geusens F, Skalkidou A
Eur J Midwifery 9 (-) - [2025-01-17; online 2025-01-17]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
A spatiotemporal atlas of human spermatogenesis
Lindskog C, Hikmet F, Méar L, ..., Stukenborg JB, Uhlén M
- - (-) - [2025-01-17; online 2025-01-17]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
New insights into the N-glycomes of Dictyostelium species.
Hykollari A, Malzl D, Jin C, ..., Wilson IBH, Paschinger K
BBA Adv 7 (-) 100142 [2025-01-16; online 2025-01-16]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
A thermoplastic chip for 2D and 3D correlative assays combining screening and high-resolution imaging of immune cell responses.
van Ooijen H, Verron Q, Zhang H, ..., Sandström N, Önfelt B
Cell Reports Methods - (-) 100965 [2025-01-16; online 2025-01-16]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Liquid crystal nanoparticles for oral combination antibiotic therapies: A strategy towards protecting commensal gut bacteria during treatment.
He X, Karlsson PA, Xiong R, ..., Bergström CAS, Hubert M
Journal of Colloid and Interface Science 678 (Pt B) 287-300 [2025-01-15; online 2024-08-31]
Cryo-EM [Service]
PubMed DOI Crossref
Influence of TEMPO on preparation of softwood nanofibrils and their hydrogel network properties.
Baş Y, Berglund L, Stevanic JS, ..., Niittylä T, Oksman K
Carbohydr Polym 348 (Pt A) 122812 [2025-01-15; online 2024-09-29]
Swedish Metabolomics Centre [Service]
PubMed DOI Crossref
The Progression of Mycosis Fungoides During Treatment with Mogamulizumab: A BIO-MUSE Case Study of the Tumor and Immune Response in Peripheral Blood and Tissue.
Johansson A, Kalliara E, Belfrage E, ..., Drott K, Ek S
Biomedicines 13 (1) - [2025-01-14; online 2025-01-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Lund [Service]
PubMed DOI Crossref
An activin receptor-like kinase 1-governed monocytic lineage shapes an immunosuppressive landscape in breast cancer metastases.
Safaee Talkhoncheh M, Sjölund J, Bolivar P, ..., Bocci M, Pietras K
J. Clin. Invest. 135 (5) - [2025-01-14; online 2025-01-14]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Low impact of Zostera marina meadows on sediment and water microbiota under brackish conditions.
Herlemann DPR, Delgado LF, Riedinger DJ, ..., Rakowski M, Labrenz M
Environ Microbiome 20 (1) 2 [2025-01-11; online 2025-01-11]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A scalable CRISPR-Cas9 gene editing system facilitates CRISPR screens in the malaria parasite Plasmodium berghei.
Jonsdottir TK, Paoletta MS, Ishizaki T, ..., Henriksson J, Bushell ESC
Nucleic Acids Res. 53 (2) - [2025-01-11; online 2025-01-23]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Effects of compost amendments and experimental drought on grassland soil microbial communities.
Guasconi D, Hugelius G, Clemmensen KE, ..., Roth N, Fransson P
FEMS Microbiol. Lett. 372 (-) - [2025-01-10; online 2025-10-06]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Bacteroidales T6SS minor Hcp subunits form heteromers recognising effectors
San-Miguel SG, Al-Ammari MKS, Johansson E, ..., Uhlin BE, Cisneros DA
- - (-) - [2025-01-10; online 2025-01-10]
Cryo-EM [Collaborative]
PubMed DOI Crossref
Bacterial community responses to micropollutants in chemically stressed small rivers in Kenya using environmental DNA.
Verbücheln N, Schaufelberger S, Cardis T, ..., Backhaus T, Inostroza PA
FEMS Microbiol. Lett. 372 (-) - [2025-01-10; online 2025-10-16]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Airway MMP-12 and DNA methylation in COPD: an integrative approach.
Eriksson Ström J, Kebede Merid S, Linder R, ..., Melén E, Behndig AF
Respir. Res. 26 (1) 10 [2025-01-10; online 2025-01-10]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Impact of Linker Composition on VHL PROTAC Cell Permeability.
Abeje YE, Wieske LHE, Poongavanam V, ..., Meibom D, Kihlberg J
J. Med. Chem. 68 (1) 638-657 [2025-01-09; online 2024-12-18]
Swedish NMR Centre [Service]
PubMed DOI Crossref
The type of environment has a greater impact on the larval microbiota of Anopheles arabiensis than on the microbiota of their breeding water.
Assentato L, Nilsson LKJ, Brunius C, ..., Hopkins RJ, Terenius O
FEMS Microbiol. Ecol. 101 (1) - [2025-01-07; online 2024-12-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Pervasive horizontal transmission of Wolbachia in natural populations of closely related and widespread tropical skipper butterflies.
Ribeiro P, Butenko A, Linke D, ..., Wahlberg N, Matos-Maraví P
BMC Microbiol. 25 (1) 5 [2025-01-07; online 2025-01-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dynamic binding of the bacterial chaperone Trigger factor to translating ribosomes in Escherichia coli.
Hävermark T, Metelev M, Lundin E, Volkov IL, Johansson M
Proc. Natl. Acad. Sci. U.S.A. 122 (1) e2409536121 [2025-01-07; online 2024-12-31]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Stress granule formation is regulated by signaling machinery involving Sch9/Ypk1, sphingolipids, and Ubi4.
Chen L, Gao Y, Hao X, ..., Sunnerhagen P, Liu B
Theranostics 15 (5) 1987-2005 [2025-01-06; online 2025-01-06]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users.
Kaldhusdal V, Boger MF, Tjernlund A, ..., Czarnewski P, Broliden K
Sci Rep 15 (1) 1014 [2025-01-06; online 2025-01-06]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Positive Selection on Mammalian Immune Genes-Effects of Gene Function and Selective Constraint.
Nandakumar M, Lundberg M, Carlsson F, Råberg L
Mol. Biol. Evol. 42 (1) - [2025-01-06; online 2025-01-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Improving taxonomic inference from ancient environmental metagenomes by masking microbial-like regions in reference genomes.
Oskolkov N, Jin C, Clinton SL, ..., Heintzman PD, van der Valk T
Gigascience 14 (-) - [2025-01-06; online 2025-10-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Best-practice guidance for Earth BioGenome Project sample collection and processing: progress and challenges in biodiverse reference genome creation.
Lawniczak MKN, Kocot KM, Astrin JJ, ..., Santos BF, Earth BioGenome Project Samples and Processing Subcommittee
Gigascience 14 (-) - [2025-01-06; online 2025-05-29]
NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Analysis-ready VCF at Biobank scale using Zarr.
Czech E, Tyler W, White T, ..., Hammerbacher J, Kelleher J
Gigascience 14 (-) - [2025-01-06; online 2025-06-02]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Model-informed drug development for antimicrobials: translational pharmacokinetic-pharmacodynamic modelling of apramycin to facilitate prediction of efficacious dose in complicated urinary tract infections.
Hernández-Lozano I, Aranzana-Climent V, Cao S, ..., Vingsbo Lundberg C, Friberg LE
J. Antimicrob. Chemother. 80 (1) 301-310 [2025-01-03; online 2024-11-16]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Microbial methanogenesis fueled by freshwater infiltration and oil biodegradation in the Siljan impact structure, Sweden
van Dam F, Kietäväinen R, Westmeijer G, ..., McIntosh JC, Drake H
Discov Appl Sci 7 (1) - [2025-01-03; online 2025-01-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Pantothenate kinase 4 controls skeletal muscle substrate metabolism.
Miranda-Cervantes A, Fritzen AM, Raun SH, ..., Richter EA, Kleinert M
Nat Commun 16 (1) 345 [2025-01-02; online 2025-01-02]
Swedish Metabolomics Centre [Collaborative]
PubMed DOI Crossref
Evolutionary convergence of sensory circuits in the pallium of amniotes.
Rueda-Alaña E, Senovilla-Ganzo R, Grillo M, ..., De Pittà M, García-Moreno F
Science 387 (6735) eadp3411 [2025-01-02; online 2025-02-14]
In Situ Sequencing [Service]
PubMed DOI Crossref
Cellular heterogeneity in metabolism and associated microbiome of a non-model phytoflagellate.
Jeevannavar A, Florenza J, Divne A, Tamminen M, Bertilsson S
ISME J 19 (1) - [2025-01-02; online 2025-03-10]
NGI Short read [Service] NGI Single cell [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Anaerobic breviate protist survival in microcosms depends on microbiome metabolic function.
Aguilera-Campos KI, Boisard J, Törnblom V, ..., Cotillas EA, Stairs CW
ISME J 19 (1) - [2025-01-02; online 2025-08-12]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
A Rationally Designed Azobenzene Photoswitch for DNA G-Quadruplex Regulation in Live Cells.
Dudek M, López-Pacios L, Sabouri N, ..., Martinez-Fernandez L, Deiana M
Angew. Chem. Int. Ed. Engl. 64 (1) e202413000 [2025-01-02; online 2024-11-06]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Single-cell proteo-transcriptomic profiling reveals altered characteristics of stem and progenitor cells in patients receiving cytoreductive hydroxyurea in early-phase chronic myeloid leukemia.
Komic H, Nilsson MS, Wennström L, ..., Thorén FB, Martner A
Haematologica 110 (1) 117-128 [2025-01-01; online 2025-01-01]
NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Non-nucleosomal (CENP-A/H4)2 - DNA complexes as a possible platform for centromere organization.
Ali-Ahmad A, Mors M, Carrer M, ..., Cascella M, Sekulić N
bioRxiv - (-) - [2025-01-01; online 2025-01-01]
Cryo-EM [Service]
PubMed DOI Crossref
Dark carbon fixation is a common process in the water column of stratified boreal lakes.
Martin G, Rissanen AJ, Garcia SL, Peura S
Sci. Total Environ. 958 (-) 177433 [2025-01-01; online 2024-12-10]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Vitamin B12 release through bacteriophage-mediated cell lysis of the marine bacterium Sulfitobacter sp. M39.
Sultana S, Bruns S, Pacheco-Valenciana A, ..., Garcia S, Wienhausen G
ISME COMMUN. 5 (1) ycaf136 [2025-01-00; online 2025-08-29]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Trees First Inhibit Then Promote Litter Decomposition in the Subarctic.
Jonsson M, Clemmensen KE, Castaño C, Parker TC
Ecol. Lett. 28 (1) e70063 [2025-01-00; online 2025-01-20]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service] Swedish NMR Centre [Service]
PubMed DOI Crossref
The Transcriptomic and Gene Fusion Landscape of Pleomorphic Salivary Gland Adenomas.
Afshari MK, Tejera Nevado P, Fehr A, ..., Stenman G, Andersson MK
Genes Chromosomes Cancer 64 (1) e70023 [2025-01-00; online 2025-01-15]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Targeted metagenomics using probe capture detect a larger diversity of nitrogen and methane cycling genes in complex microbial communities than traditional metagenomics.
Siljanen HMP, Manoharan L, Hilts AS, ..., Biasi C, Schleper C
ISME COMMUN. 5 (1) ycaf183 [2025-01-00; online 2025-11-01]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Structural basis for lipid transfer by the ATG2A-ATG9A complex.
Wang Y, Dahmane S, Ti R, ..., Carlson LA, Stjepanovic G
Nat. Struct. Mol. Biol. 32 (1) 35-47 [2025-01-00; online 2024-08-22]
Cryo-EM [Service]
PubMed DOI Crossref
Plasma proteomics in epilepsy: Network-based identification of proteins associated with seizures.
Ashtiani SH, Akel S, Berger E, Zelano J
Epilepsy Res 209 (-) 107480 [2025-01-00; online 2024-11-19]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Modification of xylan in secondary walls alters cell wall biosynthesis and wood formation programs and improves saccharification.
Sivan P, Urbancsok J, Donev EN, ..., Vilaplana F, Mellerowicz EJ
Plant Biotechnol. J. 23 (1) 174-197 [2025-01-00; online 2024-10-22]
Cryo-EM [Service] Swedish Metabolomics Centre [Service]
DOI Crossref
Influence of gas composition on carbonation of quicklime granules derived from different limestone types
Olovsson K, Ma C, Niinipuu M, Eriksson M, Broström M
Chemical Engineering Journal 506 (-) 159543 [2025-01-00; online 2025-01-00]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
High temperature exposure of MgO-based refractory material to biomass and coal ash with/without quicklime
Wagri NK, Carlborg M, Eriksson M, ..., Broström M, Andersson BM
Ceramics International 51 (3) 3665-3674 [2025-01-00; online 2025-01-00]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Genomic prediction for yield and malting traits in barley using metabolomic and near-infrared spectra
Raffo MA, Sarup P, Jensen J, ..., Jahoor A, Christensen OF
Theor. Appl. Genet. 138 (1) - [2025-01-00; online 2025-01-09]
Swedish NMR Centre [Service]
PubMed DOI Crossref
GBA1 T369M and Parkinson's disease - Further evidence of a lack of association in the Swedish population.
Brolin KA, Bäckström D, Wallenius J, ..., Hansson O, Swanberg M
Parkinsonism Relat Disord 130 (-) 107191 [2025-01-00; online 2024-10-31]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Fear extinction retention in children, adolescents, and adults.
Widegren E, Vegelius J, Frick MA, ..., Gingnell M, Frick A
Dev Cogn Neurosci 71 (-) 101509 [2025-01-00; online 2025-01-09]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden.
Tång Hallbäck E, Björkman JT, Dyrkell F, ..., Sikora P, Mölling P
Microb Genom 11 (1) - [2025-01-00; online 2025-01-27]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative] Clinical Genomics Uppsala [Collaborative] Clinical Genomics Örebro [Collaborative]
PubMed DOI Crossref
DNA methylation in cord blood partially mediates the effects of prepregnancy BMI on early childhood offspring BMI.
Maguolo A, Jönsson J, Perfilyev A, ..., Renault KM, Ling C
Obesity (Silver Spring) 33 (1) 177-189 [2025-01-00; online 2024-12-11]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Compound heterozygosity for two variants in BMP5 in human skeletal dysostosis with atrioventricular septal defect.
Gregersen PA, Hammarsjö A, Graversen L, ..., Hellfritzsch MB, Grigelioniene G
Clin. Genet. 107 (1) 78-82 [2025-01-00; online 2024-09-06]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Comparative Analysis of Traditional and Pharmacometric-Based Pharmacoeconomic Modeling in the Cost-Utility Evaluation of Sunitinib Therapy.
Centanni M, Nijhuis J, Karlsson MO, Friberg LE
Pharmacoeconomics 43 (1) 31-43 [2025-01-00; online 2024-09-26]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Chemogenomic Screening in a Patient‐Derived 3D Fatty Liver Disease Model Reveals the CHRM1‐TRPM8 Axis as a Novel Module for Targeted Intervention
Youhanna S, Kemas AM, Wright SC, ..., Sundström M, Lauschke VM
Adv Sci (Weinh) 12 (3) - [2025-01-00; online 2024-11-28]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Can genetic diversity in microalgae species be explained by climate: an overview of metabarcoding with diatoms.
Kulaš A, Lemonnier C, Alric B, ..., Udovič MG, Rimet F
ISME COMMUN. 5 (1) ycaf171 [2025-01-00; online 2025-09-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A Non-Centrifugation Method to Concentrate and Purify Extracellular Vesicles Using Superabsorbent Polymer Followed by Size Exclusion Chromatography.
Bergqvist M, Lässer C, Crescitelli R, Park KS, Lötvall J
J Extracell Vesicles 14 (1) e70037 [2025-01-00; online 2025-01-22]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
Producing dissolving pulp from agricultural waste
Wojtasz J, Sjöstedt N, Storm B, ..., Rydberg T, Bernin D
RSC Sustain. 3 (5) 2210-2220 [2025-00-00; online 2025-00-00]
Swedish NMR Centre [Service]
DOI Crossref
Cord Blood Biomarkers Predict Psoriasis Many Years Before Diagnosis: A Prospective Birth Cohort Study
Das D, Ludvigsson J
Arch Clin Biomed Res 2025 9 (3) - [2025-00-00; online 2025-00-00]
Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
SciLifeLab Data Centre
Publications 9.5.1