Publications 2025

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91 publications

PubMed DOI Crossref
Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer.
Sur I, Zhao W, Zhang J, ..., de la Roche M, Taipale J
Life Sci. Alliance 8 (6) - [2025-06-00; online 2025-04-03]
NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Frequent Hybridisation Between Parapatric Lekking Bird-of-Paradise Species.
Thörn F, Müller IA, Soares AER, ..., Blom MPK, Irestedt M
Mol. Ecol. 34 (11) e17780 [2025-06-00; online 2025-04-29]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Diffuse large B cell lymphoma in rheumatoid arthritis patients is associated with elevated B-cell driving factors including CXCL13.
Euler N, Hellbacher E, Klint EA, ..., Grönwall C, AUTO-LYMPHOMA study group
Clin. Immunol. 275 (-) 110476 [2025-06-00; online 2025-03-19]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Diel Bacterioplankton Community Dynamics Under Contrasting Light Regimes.
Papadopoulou S, Linkhorst A, Balmonte JP, ..., Bertilsson S, Székely AJ
Environ Microbiol Rep 17 (3) e70099 [2025-06-00; online 2025-05-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Plasma membrane labelling efficiency, internalization and partitioning of functionalized fluorescent lipids as a function of lipid structure
Sezgin E
- - (-) - [2025-05-13; online 2025-05-13]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Microbial transfer through fecal strings on eggs affects leaf beetle microbiome dynamics.
An Y, Garcia SL, Hambäck PA
mSystems - (-) e0172324 [2025-05-13; online 2025-05-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
CpG island methylator phenotype classification improves risk assessment in pediatric T-cell acute lymphoblastic leukemia.
Schäfer Hackenhaar F, Refhagen N, Hagleitner M, ..., Hultdin M, Degerman S
Blood 145 (19) 2161-2178 [2025-05-08; online 2025-01-22]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Gut microbiota mediates SREBP-1c-driven hepatic lipogenesis and steatosis in response to zero-fat high-sucrose diet.
Bergentall M, Tremaroli V, Sun C, ..., Nieuwdorp M, Bäckhed F
Mol Metab 97 (-) 102162 [2025-05-07; online 2025-05-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Green Listed v2.0: A Web Application for Streamlined Design of Custom CRISPR Screens.
Henkel E, Li Z, Uvehag D, ..., Henkel M, Wermeling F
CRISPR J - (-) - [2025-05-07; online 2025-05-07]
CRISPR Functional Genomics [Technology development] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity.
Xu Y, Lou D, Chen P, ..., Hu Y, Wang J
Dev. Cell - (-) - [2025-05-06; online 2025-05-06]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
External validation of plasma CSF1 as a preoperative prognostic marker in patients with resectable intrahepatic cholangiocarcinoma.
Akiki A, Jacobsson H, Nouairia G, ..., Taflin H, Jansson H
Eur J Surg Oncol 51 (8) 110123 [2025-05-04; online 2025-05-04]
Affinity Proteomics Stockholm [Service]
DOI Crossref
Museum Ecologies
Fredengren C, Ewing A, Owman C, Holmstedt J
Mus. Soc. 23 (1) - [2025-05-01; online 2025-05-01]
Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
High Content Imaging in Drug Discovery
- - (-) - [2025-04-30; online 2025-04-30]
Chemical Biology Consortium Sweden (CBCS) [Technology development]
PubMed DOI Crossref
Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis.
Sreenivasan AP, Vaivade A, Noui Y, ..., Spjuth O, Kultima K
NPJ Digit Med 8 (1) 224 [2025-04-24; online 2025-04-24]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Constraints to gene flow increase the risk of genome erosion in the Ngorongoro Crater lion population.
Dussex N, Jansson I, van der Valk T, ..., E Mjingo E, Spong G
Commun Biol 8 (1) 640 [2025-04-21; online 2025-04-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis.
González-López A, Ge X, Larsson DSD, ..., Sanyal S, Selmer M
Nat Commun 16 (1) 3693 [2025-04-18; online 2025-04-18]
Cryo-EM [Service]
PubMed DOI Crossref
Challenging the "Undruggable"─Targeting STAT3 but Identifying Potent TrkA-Targeted Inhibitors.
Iliev P, McCutcheon C, Admas TH, ..., Frank DA, Page BDG
J. Med. Chem. - (-) - [2025-04-17; online 2025-04-17]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
In vivo composition of the mitochondrial nucleoid in mice.
García-Villegas R, Odenthal F, Giannoula Y, ..., Levander F, Larsson NG
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research - (-) 119955 [2025-04-15; online 2025-04-15]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Antibacterial compounds against non-growing and intracellular bacteria
Kaldalu N, Bērziņš N, Berglund Fick S, ..., Hauryliuk V, Tenson T
npj Antimicrob Resist 3 (1) - [2025-04-11; online 2025-04-11]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
A red fluorescent lifeact marker to study actin morphology in podocytes.
Wiesner E, Binz-Lotter J, Tröder SE, ..., Wedlich-Söldner R, Hackl MJ
Sci Rep 15 (1) 12386 [2025-04-11; online 2025-04-11]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Nuclear AGO2 supports influenza A virus replication through type-I interferon regulation.
Huang H, Fong M, Nowak I, ..., Angeletti D, Sarshad AA
Nucleic Acids Res. 53 (7) - [2025-04-10; online 2025-04-12]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dual GSK-3β/HDAC Inhibitors Enhance the Efficacy of Macrophages to Control Mycobacterium tuberculosis Infection.
Kalsum S, Xu R, Akber M, ..., Zhou Y, Brighenti S
Biomolecules 15 (4) 550 [2025-04-09; online 2025-04-09]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Design, Synthesis, and Biophysical Characterization of Pyridine Bis‐Quinazoline Derivatives as Selective G‐Quadruplex DNA Stabilizers
Nath Das R, Chorell E
Chem. Eur. J. 31 (21) - [2025-04-09; online 2025-03-05]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Ectoderm barcoding reveals neural and cochlear compartmentalization.
de Haan S, He J, Corbat AA, ..., Kelley MW, Andersson ER
Science 388 (6742) 60-68 [2025-04-04; online 2025-04-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A Million Years of Mammoth Mitogenome Evolution.
Chacón-Duque JC, Thomas Thorpe JA, Li W, ..., Heintzman PD, Dalén L
Mol. Biol. Evol. 42 (4) - [2025-04-01; online 2025-04-09]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
The Development of Selective Chemical Probes for Serine Arginine Protein Kinase 3
Hanke D, McCutcheon C, Page BDG
Chem Biol Drug Des 105 (4) - [2025-04-00; online 2025-04-03]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
A genome-wide association study of imaging-defined atherosclerosis.
Gummesson A, Lundmark P, Chen QS, ..., Fall T, Gigante B
Nat Commun 16 (1) 2266 [2025-03-31; online 2025-03-31]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Sex pheromone biosynthesis in the Oriental fruit moth Grapholita molesta involves Δ8 desaturation.
Dam MI, Ding BJ, Brauburger K, ..., Heckel DG, Löfstedt C
Insect Biochem. Mol. Biol. - (-) 104307 [2025-03-30; online 2025-03-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The DNA methylation landscape of primary triple-negative breast cancer.
Aine M, Nacer DF, Arbajian E, ..., Borg Å, Staaf J
Nat Commun 16 (1) 3041 [2025-03-28; online 2025-03-28]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Phylogeny of Palicoureeae (Rubiaceae) based on 353 low-copy nuclear genes - With particular focus on Hymenocoleus Robbr.
Thilén L, Lachenaud O, Thureborn O, Razafimandimbison SG, Rydin C
Mol. Phylogenet. Evol. - (-) 108338 [2025-03-28; online 2025-03-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cell membranes sustain phospholipid imbalance via cholesterol asymmetry.
Doktorova M, Symons JL, Zhang X, ..., Levental KR, Levental I
Cell - (-) - [2025-03-26; online 2025-03-26]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Blood-based biomarkers of Alzheimer's disease and incident dementia in the community.
Grande G, Valletta M, Rizzuto D, ..., Fratiglioni L, Vetrano DL
Nat. Med. - (-) - [2025-03-26; online 2025-03-26]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Identification of a SNAI1 enhancer RNA that drives cancer cell plasticity.
Fan C, Wang Q, Krijger PHL, ..., de Laat W, Ten Dijke P
Nat Commun 16 (1) 2890 [2025-03-25; online 2025-03-25]
CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Neural ensembles that encode nocifensive mechanical and heat pain in mouse spinal cord.
Zhang MD, Kupari J, Su J, ..., Lagerström MC, Ernfors P
Nat. Neurosci. - (-) - [2025-03-24; online 2025-03-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A large-scale sORF screen identifies putative microproteins involved in cancer cell fitness.
Schlesinger D, Dirks C, Navarro C, ..., Martinez TF, Elsässer SJ
iScience 28 (3) 111884 [2025-03-21; online 2025-01-23]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Intestinal estrogen receptor beta modulates the murine colon tumor immune microenvironment.
Birgersson M, Holm M, Gallardo-Dodd CJ, ..., Archer A, Williams C
Cancer Lett. - (-) 217661 [2025-03-20; online 2025-03-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Targeting TUBG1 in RB1‐negative tumors
Lindström L, Zhou J, Villoutreix BO, ..., Olsson R, Alvarado‐Kristensson M
The FASEB Journal 39 (5) - [2025-03-15; online 2025-02-28]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Sox9 and nuclear factor I transcription factors regulate the timing of neurogenesis and ependymal maturation in dopamine progenitors.
Lahti L, Volakakis N, Gillberg L, ..., Gronostajski R, Perlmann T
Development 152 (6) - [2025-03-15; online 2025-03-26]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dietary patterns and blood-based biomarkers of Alzheimer's disease in cognitively intact older adults: Findings from a population-based study.
Mrhar A, Carballo-Casla A, Grande G, ..., Calderón-Larrañaga A, Vetrano DL
J Prev Alzheimers Dis - (-) 100124 [2025-03-14; online 2025-03-14]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Genetic liability for anxiety and treatment response to the monoamine stabilizer OSU6162 in alcohol dependence: a retrospective secondary analysis.
Hong MG, Khemiri L, Guterstam J, ..., Jayaram-Lindström N, Melas PA
Pharmacol Rep - (-) - [2025-03-12; online 2025-03-12]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Historic manioc genomes illuminate maintenance of diversity under long-lived clonal cultivation.
Kistler L, de Oliveira Freitas F, Gutaker RM, ..., Capriles JM, Allaby RG
Science 387 (6738) eadq0018 [2025-03-07; online 2025-03-07]
Ancient DNA [Collaborative]
PubMed DOI Crossref
Continuous map of early hematopoietic stem cell differentiation across human lifetime.
Komic H, Schmachtel T, Simoes C, ..., Thorén FB, Rieger MA
Nat Commun 16 (1) 2287 [2025-03-07; online 2025-03-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Antisense-mediated regulation of exon usage in the elastic spring region of Titin modulates sarcomere function.
Celik S, Hyrefelt L, Czuba T, ..., Smith JG, Gidlöf O
Cardiovasc. Res. - (-) - [2025-03-05; online 2025-03-05]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Decreased levels and function of dendritic cells in blood and airways predict COVID-19 severity.
Österberg B, Falck-Jones S, Vangeti S, ..., Färnert A, Smed-Sörensen A
Clin Transl Immunology 14 (3) e70026 [2025-03-03; online 2025-03-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening.
Vaivade A, Erngren I, Carlsson H, ..., Burman J, Kultima K
Nat Commun 16 (1) 2014 [2025-02-27; online 2025-02-27]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Lithography-Free Water Stable Conductive Polymer Nanowires
Hughes D, Mousa AH, Musumeci C, ..., Olsson R, Hjort M
Nano Lett. 25 (8) 3059-3065 [2025-02-26; online 2025-02-13]
Chemical Biology Consortium Sweden (CBCS) [Technology development]
PubMed DOI Crossref
Duplexed CeTEAM drug biosensors reveal determinants of PARP inhibitor selectivity in cells.
Pires MJ, Alam S, Lovric A, ..., Altun M, Valerie NCK
J. Biol. Chem. - (-) 108361 [2025-02-26; online 2025-02-26]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Dissecting the properties of circulating IgG against streptococcal pathogens through a combined systems antigenomics-serology workflow
Gomez Toledo A, Chowdhury S, Hjortswang E, ..., Rasmussen M, Malmström J
Nat Commun 16 (1) - [2025-02-24; online 2025-02-24]
Structural Proteomics [Collaborative]
DOI Crossref
Spatial mapping of DNA synthesis reveals dynamics and geometry of human replication nanostructures
Hawgood M, Urién González B, Agostinho A, ..., Blom H, Lemmens B
- - (-) - [2025-02-23; online 2025-02-23]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Comprehensive Gene Expression Analysis in Papillary Thyroid Carcinoma Reveals a Transcriptional Profile Associated with Reduced Radioiodine Avidity.
Condello V, Marchettini C, Ihre-Lundgren C, Nilsson JN, Juhlin CC
Endocr. Pathol. 36 (1) 4 [2025-02-21; online 2025-02-21]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Toward target 2035: EUbOPEN - a public-private partnership to enable & unlock biology in the open.
Tredup C, Ackloo S, Beck H, ..., Arrowsmith CH, Knapp S
RSC Med Chem 16 (2) 457-464 [2025-02-19; online 2024-11-29]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Temporal dynamics of airborne fungi in Swedish forest nurseries.
Larsson R, Menkis A, Olson Å
Appl. Environ. Microbiol. 91 (2) e0130624 [2025-02-19; online 2025-01-16]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Measuring plasma membrane fluidity using confocal microscopy.
Carravilla P, Andronico L, Schlegel J, ..., Lorent J, Sezgin E
Nat Protoc - (-) - [2025-02-19; online 2025-02-19]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
A chromosome-level genome assembly of the European green toad (Bufotes viridis).
Rödin-Mörch P, Bunikis I, Choi E, ..., Proux-Wéra E, Höglund J
G3 (Bethesda) - (-) - [2025-02-19; online 2025-02-19]
NGI Long read [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Circular RNA circASH1L(4,5) protects microRNA-129-5p from target-directed microRNA degradation in human skin wound healing.
Wang Q, Niu G, Liu Z, ..., Sommar P, Xu Landén N
Br J Dermatol 192 (3) 468-480 [2025-02-18; online 2024-10-18]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Microbial communities in slow sand filters for drinking water treatment adapt to organic matter altered by ozonation.
Rosenqvist T, Hilding J, Suarez C, Paul CJ
Water Res. 270 (-) 122843 [2025-02-15; online 2024-11-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Methodological aspects of investigating the resistome in pig farm environments.
Ladyhina V, Rajala E, Sternberg-Lewerin S, ..., Bongcam-Rudloff E, Dicksved J
J Microbiol Methods 230-231 (-) 107103 [2025-02-13; online 2025-02-13]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Imaging Single Particle Profiler to Study Nanoscale Bioparticles Using Conventional Confocal Microscopy.
Sych T, Görgens A, Steiner L, ..., El Andaloussi S, Sezgin E
Nano Lett. 25 (6) 2173-2180 [2025-02-12; online 2025-01-29]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Rare and common single nucleotide variants in childhood-onset systemic lupus erythematosus.
Sayadi A, Sandling JK, Eloranta ML, ..., Rönnblom L, DISSECT Consortium
Lupus Sci Med 12 (1) - [2025-02-11; online 2025-02-11]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
High-content morphological profiling by Cell Painting in 3D spheroids
Ringers C, Holmberg D, Flobak Å, ..., Carreras Puigvert J, Spjuth O
- - (-) - [2025-02-08; online 2025-02-08]
Chemical Biology Consortium Sweden (CBCS) [Technology development]
PubMed DOI Crossref
Whole genome sequencing in early onset advanced heart failure.
Linnér E, Czuba T, Gidlöf O, ..., Ehrencrona H, Smith JG
Sci Rep 15 (1) 4306 [2025-02-05; online 2025-02-05]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The expanded genome of Hexamita inflata, a free-living diplomonad.
Akdeniz Z, Havelka M, Stoklasa M, ..., Andersson JO, Tachezy J
Sci Data 12 (1) 192 [2025-02-01; online 2025-02-01]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Single cell sequencing reveals shared clonal signatures in non-malignant B- and tumor cells in T-prolymphocytic leukemia
Hesselager C, Thörn I, Marincevic M, ..., Baliakas P, Amini RM
Blood Neoplasia - (-) 100076 [2025-02-00; online 2025-02-00]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
DOI Crossref
Modelling age at death reveals Nordic Corded Ware paleodemography
Tornberg A, Vandkilde H
Archaeol Anthropol Sci 17 (2) - [2025-02-00; online 2025-01-20]
Ancient DNA [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Impact of plant diversity in potato-ley strip-cropping systems on soil microbial communities
Riggi LGA, Ranheim Sveen T, Castaño C, ..., Clemmensen KE, Bahram M
Applied Soil Ecology 206 (-) 105777 [2025-02-00; online 2025-02-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Impact of excess sugar on the whole genome DNA methylation pattern in human sperm.
Jönsson J, Perfilyev A, Kugelberg U, ..., Öst A, Ling C
Epigenomics 17 (2) 89-104 [2025-02-00; online 2024-12-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Evolved and Plastic Gene Expression in Adaptation of a Specialist Fly to a Novel Niche.
Steward RA, Ortega Giménez J, Choudhary S, ..., Van Aken O, Runemark A
Mol. Ecol. 34 (4) e17653 [2025-02-00; online 2025-01-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Earliest modern human genomes constrain timing of Neanderthal admixture.
Sümer AP, Rougier H, Villalba-Mouco V, ..., Prüfer K, Krause J
Nature 638 (8051) 711-717 [2025-02-00; online 2024-12-12]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Diffusion Smart-seq3 of breast cancer spheroids to explore spatial tumor biology and test evolutionary principles of tumor heterogeneity.
Cougnoux A, Mahmoud L, Johnsson PA, ..., Sandberg R, Hausser J
Sci Rep 15 (1) 3811 [2025-01-30; online 2025-01-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Modulation of biological activities in adipose derived stem cells by histone deacetylation.
Abdallah S, Tabebi M, Qanadilo S, ..., Elmasry M, El-Serafi A
Sci Rep 15 (1) 3629 [2025-01-29; online 2025-01-29]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
The di-leucine motif in the host defense peptide LL-37 is essential for initiation of autophagy in human macrophages.
Rekha RS, Padhi A, Frengen N, ..., Guðmundsson GH, Bergman P
Cell Rep 44 (1) 115031 [2025-01-28; online 2024-12-20]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Association between alcohol consumption and peripheral artery disease: two de novo prospective cohorts and a systematic review with meta-analysis.
Yuan S, Wu J, Chen J, ..., Åkesson A, Larsson SC
Eur J Prev Cardiol 32 (2) 149-155 [2025-01-27; online 2024-04-16]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Exploring a pico-well based scRNA-seq method (HIVE) for simplified processing of equine bronchoalveolar lavage cells.
Fegraeus K, Riihimäki M, Nordlund J, ..., Wernersson S, Raine A
PLoS ONE 20 (1) e0317343 [2025-01-24; online 2025-01-24]
NGI Short read [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Technology development]
PubMed DOI Crossref
Ultra-Sensitive Detection of Bacterial Spores via SERS.
Segervald J, Malyshev D, Öberg R, ..., Wågberg T, Andersson M
ACS Sens. - (-) - [2025-01-23; online 2025-01-23]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
A de novo, mosaic and complex chromosome 21 rearrangement causes APP triplication and familial autosomal dominant early onset Alzheimer disease.
Ehn E, Eisfeldt J, Laffita-Mesa JM, ..., Nennesemo I, Graff C
Sci Rep 15 (1) 2912 [2025-01-23; online 2025-01-23]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration.
Brown T, Mishra K, Elewa A, ..., Yun MH, Simon A
Cell Genomics - (-) 100761 [2025-01-22; online 2025-01-22]
NGI Other NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Visualization using NIPTviewer support the clinical interpretation of noninvasive prenatal testing results.
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Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Publications 9.5.1