Strell C

scFFPE-ATAC enables high-throughput single cell chromatin accessibility profiling in formalin-fixed paraffin-embedded samples.

Yadav RP, Xing P, Zhao M, ..., Hellström M, Chen X

Nat Commun 16 (1) 10022 [2025-11-14; online 2025-11-14]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Reduced vascular leakage correlates with breast carcinoma T regulatory cell infiltration but not with metastatic propensity.

He L, Testini C, Hekmati N, ..., Strell C, Welsh M

Mol Oncol - (-) - [2025-10-16; online 2025-10-16]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

An injury-associated lobular microniche is associated with the classical tumor cell phenotype in pancreatic cancer.

Söderqvist S, Viljamaa A, Geyer N, ..., Fernández Moro C, Gerling M

Nat Commun 16 (1) 8307 [2025-09-26; online 2025-09-26]

CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A distinctive tumor compartment in pancreatic lobules defined by nascent stroma and classical tumor cell phenotype

Söderqvist S, Viljamaa A, Geyer N, ..., Moro CF, Gerling M

- - (-) - [2024-03-15; online 2024-03-15]

CRISPR Functional Genomics [Service]

FGFR1 overexpression in non-small cell lung cancer is mediated by genetic and epigenetic mechanisms and is a determinant of FGFR1 inhibitor response.

Bogatyrova O, Mattsson JSM, Ross EM, ..., Esdar C, Micke P

Eur. J. Cancer 151 (-) 136-149 [2021-07-00; online 2021-05-10]

NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure