Publications 2023

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887 publications

PubMed DOI Crossref
Proteomic profiles associated with postsurgical progression in non-functioning pituitary adenomas.
Hallén T, Johannsson G, Thorsell A, ..., Bergquist J, Skoglund T
J. Clin. Endocrinol. Metab. - (-) - [2023-12-29; online 2023-12-29]
Glycoproteomics and MS Proteomics [Collaborative]
DOI Crossref
Simultaneous detection of membrane contact dynamics and associated Ca2+signals by reversible chemogenetic reporters
Casas PG, Rossini M, Påvénius L, ..., Pizzo P, Filadi R
- - (-) - [2023-12-28; online 2023-12-28]
Integrated Microscopy Technologies Stockholm [Collaborative]
DOI Crossref
Biodistribution of DNA-origami nanostructures in live zebrafish embryos with single-cell resolution
Kolonelou C, Bräutigam L, Edwards S, ..., Andersson O, Teixeira AI
- - (-) - [2023-12-23; online 2023-12-23]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Impact of the gut microbiome on immunological responses to COVID-19 vaccination in healthy controls and people living with HIV.
Ray S, Narayanan A, Vesterbacka J, ..., Sönnerborg A, Nowak P
NPJ Biofilms Microbiomes 9 (1) 104 [2023-12-20; online 2023-12-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of Quantitative Trait Nucleotides and Development of Diagnostic Markers for Nine Fatty Acids in the Peanut.
Wang J, Chen H, Li Y, ..., Qu C, Shan S
Plants (Basel) 13 (1) - [2023-12-20; online 2023-12-20]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Effects of environmental translocation and host characteristics on skin microbiomes of sun-basking fish.
Berggren H, Nordahl O, Yıldırım Y, ..., Tibblin P, Forsman A
Proc. Biol. Sci. 290 (2013) 20231608 [2023-12-20; online 2023-12-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Rapid Metabolic Profiling of 1 μL Crude Cerebrospinal Fluid by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging Can Differentiate De Novo Parkinson's Disease.
Vallianatou T, Nilsson A, Bjärterot P, ..., Svenningsson P, Andrén PE
Anal. Chem. 95 (50) 18352-18360 [2023-12-19; online 2023-12-07]
Spatial Mass Spectrometry [Technology development]
DOI Crossref
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells
Brismar H, Senftleben M, Bajor A, Hirata E, Abrahamsson S
- - (-) - [2023-12-19; online 2023-12-19]
Integrated Microscopy Technologies Stockholm [Technology development]
PubMed DOI Crossref
Blue-shift photoconversion of near-infrared fluorescent proteins for labeling and tracking in living cells and organisms.
Pennacchietti F, Alvelid J, Morales RA, ..., Verkhusha VV, Testa I
Nat Commun 14 (1) 8402 [2023-12-19; online 2023-12-19]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification.
Hafstað V, Häkkinen J, Larsson M, ..., Vallon-Christersson J, Persson H
BMC Genomics 24 (1) 783 [2023-12-18; online 2023-12-18]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Giardia intestinalisdeoxyadenosine kinase has a unique tetrameric structure that enables high substrate affinity and makes the parasite sensitive to deoxyadenosine analogues
Ranjbarian F, Rafie K, Shankar K, ..., Carlson LA, Hofer A
- - (-) - [2023-12-18; online 2023-12-18]
Cryo-EM [Service]
PubMed DOI Crossref
Dissecting the genetic landscape of GPCR signaling through phenotypic profiling in C. elegans.
Pu L, Wang J, Lu Q, ..., Henriksson J, Chen C
Nat Commun 14 (1) 8410 [2023-12-18; online 2023-12-18]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Molecular dynamics study on micelle-small molecule interactions: developing a strategy for an extensive comparison.
Kabedev A, Bergström CAS, Larsson P
J Comput Aided Mol Des 38 (1) 5 [2023-12-16; online 2023-12-16]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Using guaiacol as a capping agent in the hydrothermal depolymerisation of kraft lignin
Ahlbom A, Maschietti M, Nielsen R, Hasani M, Theliander H
- 38 (4) 619-631 [2023-12-15; online 2023-09-26]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Short- and long-term effects of radiation exposure at low dose and low dose rate in normal human VH10 fibroblasts.
Akuwudike P, López-Riego M, Marczyk M, ..., Wojcik A, Lundholm L
Front Public Health 11 (-) 1297942 [2023-12-15; online 2023-12-15]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Influenza-A mediated pre-existing immunity levels to SARS-CoV-2 could predict early COVID-19 outbreak dynamics.
Almazán NM, Rahbar A, Carlsson M, ..., Sörensen B, Söderberg-Nauclér C
iScience 26 (12) 108441 [2023-12-15; online 2023-11-14]
Autoimmunity and Serology Profiling [Service] Drug Discovery and Development (DDD) [Service]
PubMed DOI Crossref
Effect of anode material and dispersal limitation on the performance and biofilm community in microbial electrolysis cells.
Abadikhah M, Liu M, Persson F, ..., Sun J, Modin O
Biofilm 6 (-) 100161 [2023-12-15; online 2023-10-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Balanced chromosomal rearrangements implicate YIPF5 and SPATC1L in non-obstructive oligoasthenozoospermia and oligozoospermia and of a derivative chromosome 22 in recurrent miscarriage.
David D, Fino J, Oliveira R, Dória S, Morton CC
Gene 887 (-) 147737 [2023-12-15; online 2023-08-23]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Csu pili dependent biofilm formation and virulence of Acinetobacter baumannii.
Ahmad I, Nadeem A, Mushtaq F, ..., Wai SN, Uhlin BE
NPJ Biofilms Microbiomes 9 (1) 101 [2023-12-14; online 2023-12-14]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements.
Arnqvist G, Westerberg I, Galbraith J, ..., Ewels P, Suh A
G3 (Bethesda) - (-) - [2023-12-13; online 2023-12-13]
Bioinformatics Support for Computational Resources [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phyloecology of nitrate ammonifiers and their importance relative to denitrifiers in global terrestrial biomes.
Saghaï A, Pold G, Jones CM, Hallin S
Nat Commun 14 (1) 8249 [2023-12-12; online 2023-12-12]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Genes with epigenetic alterations in human pancreatic islets impact mitochondrial function, insulin secretion, and type 2 diabetes
Rönn T, Ofori JK, Perfilyev A, ..., Bacos K, Ling C
Nat Commun 14 (1) 8040 [2023-12-12; online 2023-12-12]
Swedish Metabolomics Centre (SMC) [Collaborative]
PubMed DOI Crossref
CENP-A and CENP-B collaborate to create an open centromeric chromatin state.
Nagpal H, Ali-Ahmad A, Hirano Y, ..., Sekulić N, Fierz B
Nat Commun 14 (1) 8227 [2023-12-12; online 2023-12-12]
Cryo-EM [Service]
PubMed DOI Crossref
The formation of the Indo-Pacific montane avifauna.
Reeve AH, Kennedy JD, Pujolar JM, ..., Nylander JAA, Jønsson KA
Nat Commun 14 (1) 8215 [2023-12-11; online 2023-12-11]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Haplotype-resolved genome of heterozygous African cassava cultivar TMEB117 (Manihot esculenta).
Landi M, Shah T, Falquet L, ..., Bongcam-Rudloff E, Gisel A
Sci Data 10 (1) 887 [2023-12-09; online 2023-12-09]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The functional and molecular impact of triamcinolone acetonide on primary human bone marrow mesenchymal stem cells.
Kumlin M, Ungerstedt J, Cai H, ..., Felländer-Tsai L, Qian H
Sci Rep 13 (1) 21787 [2023-12-08; online 2023-12-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics.
Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J
Science 382 (6675) eadf8486 [2023-12-08; online 2023-12-08]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Short read NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Multimodal classification of molecular subtypes in pediatric acute lymphoblastic leukemia.
Krali O, Marincevic-Zuniga Y, Arvidsson G, ..., Syvänen AC, Nordlund J
NPJ Precis Oncol 7 (1) 131 [2023-12-08; online 2023-12-08]
Clinical Genomics Stockholm [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse.
Kurt Z, Cheng J, Barrere-Cain R, ..., Blencowe M, Yang X
Elife 12 (-) - [2023-12-07; online 2023-12-07]
NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network.
Xu X, Bhalla N, Ståhl P, Jaldén J
BMC Bioinformatics 24 (1) 461 [2023-12-07; online 2023-12-07]
NGI Long read NGI Short read [Service] NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Gut bacteria at 6 months of age are associated with immune cell status in 1‐year‐old children
Nilsen M, Nygaard UC, Brodin P, ..., Vettukattil R, Rudi K
Scand J Immunol - (-) - [2023-12-07; online 2023-12-07]
Cellular Immunomonitoring [Collaborative]
DOI Crossref
Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12
Martinez A, Tai MD, Ochoa L, ..., Valpuesta J, Cuellar J
- - (-) - [2023-12-06; online 2023-12-06]
Cryo-EM [Service]
PubMed DOI Crossref
Disinfection by-products in drinking water and risk of colorectal cancer: a population-based cohort study.
Helte E, Säve-Söderbergh M, Larsson SC, Martling A, Åkesson A
J. Natl. Cancer Inst. 115 (12) 1597-1604 [2023-12-06; online 2023-08-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Meta-Analyses of Genome-Wide Association Studies for Postpartum Depression.
Guintivano J, Byrne EM, Kiewa J, ..., Meltzer-Brody S, Sullivan P
Am J Psychiatry 180 (12) 884-895 [2023-12-01; online 2023-10-18]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mapping and Functional Dissection of the Rumpless Trait in Piao Chicken Identifies a Causal Loss of Function Mutation in the Novel Gene Rum.
Guo Y, Tian J, Song C, ..., Carlborg Ö, Hu X
Mol. Biol. Evol. 40 (12) - [2023-12-01; online 2023-12-10]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Genome-Wide Association and Two-Sample Mendelian Randomization Analyses of Plasma Ghrelin and Gastrointestinal Cancer Risk.
Larsson SC, Höijer J, Sun J, ..., Burgess S, Michaëlsson K
Cancer Epidemiol Biomarkers Prev 32 (12) 1771-1776 [2023-12-01; online 2023-10-04]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation.
Jensen A, Swift F, de Vries D, ..., Roos C, Guschanski K
Mol. Biol. Evol. 40 (12) - [2023-12-01; online 2023-11-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Three-dimensional reconstruction of interstitial extracellular vesicles in human liver as determined by electron tomography.
Olofsson Bagge R, Berndtsson J, Urzì O, ..., Micaroni M, Crescitelli R
J Extracell Vesicles 12 (12) e12380 [2023-12-00; online 2023-11-27]
Integrated Microscopy Technologies Gothenburg [Collaborative]
PubMed DOI Crossref
The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.
Ozden B, Kryshtafovych A, Karaca E
Proteins 91 (12) 1636-1657 [2023-12-00; online 2023-10-20]
Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Tertiary structure assessment at CASP15.
Simpkin AJ, Mesdaghi S, Sánchez Rodríguez F, ..., Keegan RM, Rigden DJ
Proteins 91 (12) 1616-1635 [2023-12-00; online 2023-09-25]
Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Screening for Circulating Inflammatory Proteins Does Not Reveal Plasma Biomarkers of Constant Tinnitus.
Cederroth CR, Hong MG, Freydin MB, ..., Bulla J, Williams FMK
J Assoc Res Otolaryngol 24 (6) 593-606 [2023-12-00; online 2023-12-11]
Affinity Proteomics Stockholm [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Plasma Protein Profiling of Incident Cardiovascular Diseases: A Multisample Evaluation.
Lind L, Titova O, Zeng R, ..., Assimes T, Michaëlsson K
Circ Genom Precis Med 16 (6) e004233 [2023-12-00; online 2023-11-28]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Patterns of phylogenetic diversification in the Dollarbird (Eurystomus orientalis) and Azure Roller (Eurystomus azureus) complex.
Johansson US, Irestedt M, Ericson PGP
Mol. Phylogenet. Evol. 189 (-) 107909 [2023-12-00; online 2023-08-22]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mitochondrial membrane potential acts as a retrograde signal to regulate cell cycle progression.
Gorospe CM, Carvalho G, Herrera Curbelo A, ..., Niedźwiecka K, Wanrooij PH
Life Sci. Alliance 6 (12) - [2023-12-00; online 2023-09-11]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Lipid- and substrate-induced conformational and dynamic changes in a glycosyltransferase involved in E. coli LPS synthesis revealed by 19F and 31P NMR.
Patrick J, Pettersson P, Mäler L
Biochimica et Biophysica Acta (BBA) - Biomembranes 1865 (8) 184209 [2023-12-00; online 2023-08-07]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
In-depth immune profiling reveals advanced B- and T-cell differentiation to be associated with Th1-driven immune dysregulation in common variable immunodeficiency.
Hultberg J, Blixt E, Göransson R, ..., Ernerudh J, Nyström S
Clin. Immunol. 257 (-) 109816 [2023-12-00; online 2023-10-31]
Affinity Proteomics Uppsala [Service] Cellular Immunomonitoring [Service]
PubMed DOI Crossref
Glycan Complexity and Heterogeneity of Glycoproteins in Somatic Extracts and Secretome of the Infective Stage of the Helminth Fasciola hepatica.
De Marco Verissimo C, Cwiklinski K, Nilsson J, ..., Karlsson NG, Dalton JP
Mol. Cell Proteomics 22 (12) 100684 [2023-12-00; online 2023-11-21]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Hensen N, Bonometti L, Westerberg I, ..., Hiltunen Thorén M, Johannesson H
Mol. Phylogenet. Evol. 189 (-) 107938 [2023-12-00; online 2023-10-10]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Fluorescence-activated multi-organelle mapping of subcellular plant hormone distribution.
Skalický V, Antoniadi I, Pěnčík A, ..., Ljung K, Novák O
Plant J. 116 (6) 1825-1841 [2023-12-00; online 2023-09-08]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development.
Urbancsok J, Donev EN, Sivan P, ..., Street NR, Mellerowicz EJ
New Phytol. 240 (6) 2312-2334 [2023-12-00; online 2023-10-19]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Defective Uterine Spiral Artery Remodeling and Placental Senescence in a Pregnant Rat Model of Polycystic Ovary Syndrome.
Hu M, Zhang Y, Zhang X, ..., Shao LR, Billig H
Am. J. Pathol. 193 (12) 1916-1935 [2023-12-00; online 2023-09-07]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Ataxia Syndrome With Hearing Loss and Nephronophthisis Associated With a Novel Homozygous Variant in XPNPEP3.
Ben-Shabat I, Kvarnung M, Sperker W, ..., Engvall M, Paucar M
Neurol Genet 9 (6) e200100 [2023-12-00; online 2023-11-28]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
An epigenome-wide analysis of sex hormone levels and DNA methylation in male blood samples.
Harbs J, Rinaldi S, Keski-Rahkonen P, ..., Van Guelpen B, Harlid S
Epigenetics 18 (1) 2196759 [2023-12-00; online 2023-03-31]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
An enriched maternal environment and stereotypies of sows differentially affect the neuro-epigenome of brain regions related to emotionality in their piglets.
Tatemoto P, Pértille F, Bernardino T, ..., Guerrero-Bosagna C, Zanella AJ
Epigenetics 18 (1) 2196656 [2023-12-00; online 2023-05-16]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Advanced optical imaging reveals preferred spatial orientation of podocyte processes along the axis of glomerular capillaries.
Unnersjö-Jess D, Ramdedovic A, Butt L, ..., Schermer B, Benzing T
Kidney Int. 104 (6) 1164-1169 [2023-12-00; online 2023-09-27]
Integrated Microscopy Technologies Stockholm [Collaborative]
DOI Crossref
A multi-strategy antimicrobial discovery approach reveals new ways to combatChlamydia
Ölander M, Vázquez DR, Meier K, ..., Schroeder BO, Sixt BS
- - (-) - [2023-11-30; online 2023-11-30]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Using trials of caloric restriction and bariatric surgery to explore the effects of body mass index on the circulating proteome.
Goudswaard LJ, Smith ML, Hughes DA, ..., Timpson NJ, Corbin LJ
Sci Rep 13 (1) 21077 [2023-11-29; online 2023-11-29]
Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ovarian ERβ cistrome and transcriptome reveal chromatin interaction with LRH-1.
Birgersson M, Indukuri R, Lindquist L, ..., Archer A, Williams C
BMC Biol. 21 (1) 277 [2023-11-29; online 2023-11-29]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of constrained sequence elements across 239 primate genomes.
Kuderna LFK, Ulirsch JC, Rashid S, ..., Marques Bonet T, Farh KK
Nature - (-) - [2023-11-29; online 2023-11-29]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Pathogenic DDX41 variants, possible response predictors to low-dose melphalan in hypo- and normocellular MDS and AML.
Nyquist OE, Dalgaard J, Spetalen S, ..., Baliakas P, Dybedal I
Br. J. Haematol. - (-) - [2023-11-28; online 2023-11-28]
Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Calmodulin regulates protease versus co-chaperone activity of a metacaspase.
Eisele-Bürger AM, Eisele F, Malmgren Hill S, ..., Bozhkov PV, Nyström T
Cell Rep 42 (11) 113372 [2023-11-28; online 2023-11-08]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Sociodemographic characteristics and COVID-19 testing rates: spatiotemporal patterns and impact of test accessibility in Sweden
Kennedy B, Varotsis G, Hammar U, ..., Björk J, Fall T
- - (-) - [2023-11-27; online 2023-11-27]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Metabolomic profiles of intact tissues reflect clinically relevant prostate cancer subtypes.
Dudka I, Lundquist K, Wikström P, Bergh A, Gröbner G
J Transl Med 21 (1) 860 [2023-11-27; online 2023-11-27]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Infants' looking preferences for social versus non-social objects reflect genetic variation.
Portugal AM, Viktorsson C, Taylor MJ, ..., Ronald A, Falck-Ytter T
Nat Hum Behav - (-) - [2023-11-27; online 2023-11-27]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
DNA elements tether canonical Polycomb Repressive Complex 1 to human genes.
Barrasa JI, Kahn TG, Lundkvist MJ, Schwartz YB
Nucleic Acids Res. 51 (21) 11613-11633 [2023-11-27; online 2023-10-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
RecView: an interactive R application for locating recombination positions using pedigree data.
Zhang H, Hansson B
BMC Genomics 24 (1) 712 [2023-11-25; online 2023-11-25]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Selection, characterization and in vivo evaluation of novel CD44v6-targeting antibodies for targeted molecular radiotherapy.
Mortensen ACL, Berglund H, Segerström L, ..., Frejd FY, Nestor M
Sci Rep 13 (1) 20648 [2023-11-24; online 2023-11-24]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Evaluation of circulating plasma proteins in breast cancer using Mendelian randomisation.
Mälarstig A, Grassmann F, Dahl L, ..., Czene K, Hedman ÅK
Nat Commun 14 (1) 7680 [2023-11-24; online 2023-11-24]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Combined NMR and molecular dynamics conformational filter identifies unambiguously dynamic ensembles of Dengue protease NS2B/NS3pro.
Agback T, Lesovoy D, Han X, ..., Achour A, Agback P
Commun Biol 6 (1) 1193 [2023-11-24; online 2023-11-24]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
The heat shock protein LarA activates the Lon protease in response to proteotoxic stress.
Omnus DJ, Fink MJ, Kallazhi A, ..., Landreh M, Jonas K
Nat Commun 14 (1) 7636 [2023-11-22; online 2023-11-22]
Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
Covid-19 vaccine effectiveness against post-covid-19 condition among 589 722 individuals in Sweden: population based cohort study.
Lundberg-Morris L, Leach S, Xu Y, ..., Nyberg F, Bygdell M
BMJ 383 (-) e076990 [2023-11-22; online 2023-11-22]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Clinical, genetic and structural delineation of RPL13-related spondyloepimetaphyseal dysplasia suggest extra-ribosomal functions of eL13.
Jacob P, Lindelöf H, Rustad CF, ..., Girisha KM, Grigelioniene G
npj Genom. Med. 8 (1) 39 [2023-11-22; online 2023-11-22]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Changes in cell wall composition due to a pectin biosynthesis enzyme GAUT10 impact root growth.
Dash L, Swaminathan S, Šimura J, ..., Zabotina OA, Kelley DR
Plant Physiol. 193 (4) 2480-2497 [2023-11-22; online 2023-08-22]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
FAIR+E pathogen data for surveillance and research: lessons from COVID-19
Neves A, Cuesta I, Hjerde E, ..., Waheed Z, Blomberg N
Front Public Health 11 (-) - [2023-11-21; online 2023-11-21]
Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Elucidation of the Binding Orientation in α2,3- and α2,6-Linked Neu5Ac-Gal Epitopes toward a Hydrophilic Molecularly Imprinted Monolith.
Huynh CM, Mavliutova L, Sparrman T, Sellergren B, Irgum K
ACS Omega 8 (46) 44238-44249 [2023-11-21; online 2023-11-06]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Complex norovirus transmission dynamics at hospital wards revealed by deep sequencing.
Widström J, Andersson ME, Westin J, ..., Lindh M, Rydell GE
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Structures of theStaphylococcus aureusribosome inhibited by fusidic acid and fusidic acid cyclopentane
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Structural Proteomics [Collaborative]
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LC-MS-Based Metabolomics for Dietary Biomarker Discovery in a Cohort of Pregnant and Lactating Women and Their Infants
Stråvik M, Hartvigsson O, Noerman S, ..., Barman M, Sandberg AS
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Mahdi A, Zhao A, Fredengren E, ..., Pernow J, Ståhlberg M
Sci Rep 13 (1) 20230 [2023-11-19; online 2023-11-19]
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Serum DHEA and Testosterone Levels Associate Inversely With Coronary Artery Calcification in Elderly Men.
Ohlsson C, Nethander M, Norlén A, ..., Gudnason V, Tivesten Å
J. Clin. Endocrinol. Metab. 108 (12) 3272-3279 [2023-11-17; online 2023-07-01]
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Patient-derived xenografts and single-cell sequencing identifies three subtypes of tumor-reactive lymphocytes in uveal melanoma metastases
Karlsson J, Sah VR, Olofsson R, ..., Nilsson LM, Nilsson JA
eLife - (-) - [2023-11-16]
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Structure and function of the S. pombe III-IV-cyt c supercomplex.
Moe A, Dimogkioka AR, Rapaport D, Öjemyr LN, Brzezinski P
Proc. Natl. Acad. Sci. U.S.A. 120 (46) e2307697120 [2023-11-14; online 2023-11-08]
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Impaired migration and metastatic spread of human melanoma by a novel small molecule targeting the transmembrane domain of death receptor p75NTR
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Chemical Biology Consortium Sweden (CBCS) [Service]
Following the herd: Population genetics of European sheep in time and space
Morell Miranda P
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology - (-) - [2023-11-14; online 2023-11-14]
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Siegbahn A, Eriksson N, Assarsson E, ..., Åberg M, Wallentin L
PLoS ONE 18 (11) e0293465 [2023-11-14; online 2023-11-14]
Affinity Proteomics Uppsala [Collaborative]
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Hedberg Alm Y, Halvarsson P, Martin F, ..., Törngren V, Tydén E
International Journal for Parasitology: Drugs and Drug Resistance 23 (-) 78-86 [2023-11-14; online 2023-11-14]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Herrmann B, Aaziz R, Kaden R, ..., Sandelin LL, Laroucau K
Microbes Infect 26 (3) 105251 [2023-11-11; online 2023-11-11]
Clinical Genomics Uppsala [Collaborative]
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Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species.
Estravis Barcala M, van der Valk T, Chen Z, ..., Nilsson O, Wu HX
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A Gradual Transition Toward Anaplasia in Wilms Tumor Through Tolerance to Genetic Damage.
Uno K, Rastegar B, Jansson C, ..., Mengelbier LH, Gisselsson D
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Clinical Genomics Lund [Service]
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Vogt EC, Bratland E, Berland S, ..., Husebye E, Øksnes M
Hum. Reprod. - (-) - [2023-11-09; online 2023-11-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Dissecting the properties of circulating IgG against Group A Streptococcus through a combined systems antigenomics-serology workflow
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Structural Proteomics [Collaborative]
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Single-cell transcriptomics of human traumatic brain injury reveals activation of endogenous retroviruses in oligodendroglia.
Garza R, Sharma Y, Atacho DAM, ..., Jakobsson J, Marklund N
Cell Rep - (-) 113395 [2023-11-08; online 2023-11-08]
Clinical Genomics Lund [Service]
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Eurasian back-migration into Northeast Africa was a complex and multifaceted process.
Hammarén R, Goldstein ST, Schlebusch CM
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Willink B, Tunström K, Nilén S, ..., Svensson EI, Wheat CW
Nat Ecol Evol - (-) - [2023-11-06; online 2023-11-06]
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Nucleic Acids Res. - (-) - [2023-11-06; online 2023-11-06]
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Antigen-presenting autoreactive B cells activate regulatory T cells and suppress autoimmune arthritis in mice.
Aoun M, Coelho A, Krämer A, ..., Burkhardt H, Holmdahl R
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Garza R, Atacho DAM, Adami A, ..., Douse CH, Jakobsson J
Sci Adv 9 (44) eadh9543 [2023-11-03; online 2023-11-01]
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Scandinavian Journal of Urology 57 (1-6) 2-9 [2023-11-02; online 2022-12-20]
Clinical Genomics Lund [Collaborative]
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Mol Genet Genomic Med - (-) e2295 [2023-11-02; online 2023-11-02]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Cowgill J, Fan C, Haloi N, ..., Howard RJ, Lindahl E
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Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Zhang H, Lundberg M, Tarka M, Hasselquist D, Hansson B
Genome Biol Evol 15 (11) - [2023-11-01; online 2023-10-04]
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Morell Miranda P, Soares AER, Günther T
G3 (Bethesda) 13 (11) - [2023-11-01; online 2023-09-07]
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Huang P, Åbacka H, Varela D, ..., André I, Lindkvist-Petersson K
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Structural Proteomics [Collaborative]
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Applied Geochemistry 158 (-) 105779 [2023-11-00; online 2023-11-00]
Bioinformatics Support for Computational Resources [Service]
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Yeo H, Mehta V, Gulati A, Drew D
Nature 623 (7985) 193-201 [2023-11-00; online 2023-10-25]
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Smoking affects epigenetic ageing of lung bronchoalveolar lavage cells in Multiple Sclerosis.
Klose D, Needhamsen M, Ringh MV, ..., Jagodic M, Kular L
Mult Scler Relat Disord 79 (-) 104991 [2023-11-00; online 2023-09-09]
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Clinical Genomics Stockholm [Service]
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Affinity Proteomics Stockholm [Service]
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Lerchova T, Östensson M, Sigvardsson I, ..., Mårild K, Ludvigsson J
United European Gastroenterol J 11 (9) 874-883 [2023-11-00; online 2023-10-04]
Clinical Genomics Gothenburg [Collaborative]
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Microb. Ecol. 86 (4) 2357-2372 [2023-11-00; online 2023-05-24]
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Persson Waller K, Lundberg Å, Börjesson S, Nyman AK
J Dairy Sci 106 (11) 7893-7907 [2023-11-00; online 2023-05-18]
Clinical Genomics Stockholm [Service]
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Inclusion body myositis with early onset: a population-based study.
Lindgren U, Hedberg-Oldfors C, Pullerits R, Lindberg C, Oldfors A
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Clinical Genomics Gothenburg [Service]
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Host Phylogeny Structures the Gut Bacterial Community Within Galerucella Leaf Beetles.
An Y, Braga MP, Garcia SL, Grudzinska-Sterno M, Hambäck PA
Microb. Ecol. 86 (4) 2477-2487 [2023-11-00; online 2023-06-14]
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Chen X, Pandit S, Shi L, ..., Petranovic D, Mijakovic I
Adv Funct Materials 33 (45) - [2023-11-00; online 2023-07-07]
Integrated Microscopy Technologies Gothenburg [Service]
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iScience - (-) 108574 [2023-11-00; online 2023-11-00]
Clinical Genomics Gothenburg [Collaborative]
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Clinical Genomics Stockholm [Service]
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Comprehensive analyses of circulating cardiometabolic proteins and objective measures of fat mass.
Titova OE, Brunius C, Warensjö Lemming E, ..., Michaëlsson K, Larsson SC
Int J Obes (Lond) 47 (11) 1043-1049 [2023-11-00; online 2023-08-07]
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Body Mass Index and the Risk of Rheumatic Disease: Linear and Nonlinear Mendelian Randomization Analyses.
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Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency.
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Autoimmunity and Serology Profiling [Service] Clinical Genomics Stockholm [Service]
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Clinical Genomics Gothenburg [Collaborative]
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Swedish NMR Centre (SNC) [Service]
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Cryo-EM [Service]
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Proteomics reveal biomarkers for diagnosis, disease activity and long-term disability outcomes in multiple sclerosis.
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J Neuroendocrinol - (-) e13352 [2023-10-26; online 2023-10-26]
Integrated Microscopy Technologies Gothenburg [Service]
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Mucosal and Serum Antibodies 3 Weeks after Symptomatic BA.2.86 Infection.
Bladh O, Greilert-Norin N, Havervall S, ..., Klingström J, Thålin C
N. Engl. J. Med. 389 (17) 1626-1628 [2023-10-26; online 2023-10-27]
Affinity Proteomics Uppsala [Collaborative]
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Translatome analysis of tuberous sclerosis complex 1 patient-derived neural progenitor cells reveals rapamycin-dependent and independent alterations.
Aksoylu IS, Martin P, Robert F, ..., Larsson O, Ramesh V
Mol Autism 14 (1) 39 [2023-10-25; online 2023-10-25]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Marčiulynas A, Menkis A
Diversity 15 (11) 1110 [2023-10-25; online 2023-10-25]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Quantifying fluorescence lifetime responsiveness of environment sensitive probes for membrane fluidity measurements
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Integrated Microscopy Technologies Stockholm [Collaborative]
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Complete Mitochondrial DNA Genome Variation in the Swedish Population.
Sturk-Andreaggi K, Bodner M, Ring JD, ..., Marshall C, Allen M
Genes 14 (11) - [2023-10-25; online 2023-10-25]
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Polymorphic parasitic larvae cooperate to build swimming colonies luring hosts.
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Elife 12 (-) - [2023-10-20; online 2023-10-20]
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Stenberg H, Malmberg M, Hayer J
BMC Vet Res 19 (1) 219 [2023-10-20; online 2023-10-20]
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Robertsson C, Svensäter G, Davies JR, ..., Malmodin D, Wickström C
Microbiol Spectr - (-) e0270423 [2023-10-19; online 2023-10-19]
Swedish NMR Centre (SNC) [Collaborative]
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Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks.
Sendell-Price AT, Tulenko FJ, Pettersson M, ..., Andersson L, Schartl M
Nat Commun 14 (1) 6628 [2023-10-19; online 2023-10-19]
Bioinformatics Support for Computational Resources [Service]
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FBXL12 degrades FANCD2 to regulate replication recovery and promote cancer cell survival under conditions of replication stress.
Brunner A, Li Q, Fisicaro S, ..., Orre LM, Sangfelt O
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Global Proteomics and Proteogenomics [Collaborative]
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Autoantibody Profiling and Anti-Kinesin Reactivity in ANCA-Associated Vasculitis.
Mescia F, Bayati S, Brouwer E, ..., Nilsson P, Pin E
Int J Mol Sci 24 (20) - [2023-10-19; online 2023-10-19]
Autoimmunity and Serology Profiling [Collaborative]
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Low Circulating Valine Associate With High Risk of Hip Fractures.
Grahnemo L, Eriksson AL, Nethander M, ..., Pettersson-Kymmer U, Ohlsson C
J. Clin. Endocrinol. Metab. 108 (11) e1384-e1393 [2023-10-18; online 2023-05-14]
Clinical Genomics Gothenburg [Collaborative]
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Untargeted plasma metabolomics and risk of colorectal cancer-an analysis nested within a large-scale prospective cohort.
Vidman L, Zheng R, Bodén S, ..., Brunius C, Van Guelpen B
Cancer Metab 11 (1) 17 [2023-10-17; online 2023-10-17]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
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Range-wide and temporal genomic analyses reveal the consequences of near-extinction in Swedish moose.
Dussex N, Kurland S, Olsen RA, ..., Dalén L, Laikre L
Commun Biol 6 (1) 1035 [2023-10-17; online 2023-10-17]
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Label-Free Quantitative Thermal Proteome Profiling Reveals Target Transcription Factors with Activities Modulated by MC3R Signaling.
Sandbaumhüter FA, Nezhyva M, Andrén PE, Jansson ET
Anal. Chem. 95 (41) 15400-15408 [2023-10-17; online 2023-10-07]
Spatial Mass Spectrometry [Collaborative]
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Fungi Inhabiting Stem Wounds of Quercus robur following Bark Stripping by Deer Animals
Marčiulynas A, Sirgedaitė-Šėžienė V, Menkis A
Forests 14 (10) 2077 [2023-10-17; online 2023-10-17]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Modified N-acyl-L-homoserine lactone compounds abrogate Las-dependent quorum-sensing response in human pathogen Pseudomonas aeruginosa.
Ballante F, Turkina MV, Ntzouni M, Magnusson KE, Vikström E
Front Mol Biosci 10 (-) 1264773 [2023-10-16; online 2023-10-16]
Chemical Biology Consortium Sweden (CBCS) [Collaborative] Clinical Genomics Linköping [Service]
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Endothelial VEGFR2-PLCγ signaling regulates vascular permeability and antitumor immunity through eNOS/Src.
Sjöberg E, Melssen M, Richards M, ..., Dimberg A, Claesson-Welsh L
J. Clin. Invest. 133 (20) - [2023-10-16; online 2023-10-16]
Global Proteomics and Proteogenomics [Service]
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Design, structure and plasma binding of ancestral β-CoV scaffold antigens.
Hueting D, Schriever K, Sun R, ..., Andréll J, Syrén PO
Nat Commun 14 (1) 6527 [2023-10-16; online 2023-10-16]
Cryo-EM [Service] Drug Discovery and Development (DDD) [Service]
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Associations between the Bacterial Composition of Farm Bulk Milk and the Microbiota in the Resulting Swedish Long-Ripened Cheese.
Sun L, Höjer A, Johansson M, ..., Dicksved J, Lundh Å
Foods 12 (20) - [2023-10-16; online 2023-10-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Quantification of membrane fluidity in bacteria using TIR-FCS
Barbotin A, Billaudeau C, Sezgin E, Carballido-López R
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Integrated Microscopy Technologies Stockholm [Service]
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Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis.
Mastropasqua F, Oksanen M, Soldini C, ..., Bölte S, Tammimies K
Biol Open 12 (10) - [2023-10-15; online 2023-10-10]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale.
Sounart H, Voronin D, Masarapu Y, ..., Ghedin E, Giacomello S
Nat Commun 14 (1) 6500 [2023-10-14; online 2023-10-14]
Bioinformatics Support for Computational Resources [Service]
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Single-Cell RNA Analysis Reveals Cell-Intrinsic Functions of CAR T Cells Correlating with Response in a Phase II Study of Lymphoma Patients.
Sarén T, Ramachandran M, Gammelgård G, ..., Enblad G, Essand M
Clin. Cancer Res. 29 (20) 4139-4152 [2023-10-13; online 2023-08-04]
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Rewiring of the promoter-enhancer interactome and regulatory landscape in glioblastoma orchestrates gene expression underlying neurogliomal synaptic communication.
Chakraborty C, Nissen I, Vincent CA, ..., Hörnblad A, Remeseiro S
Nat Commun 14 (1) 6446 [2023-10-13; online 2023-10-13]
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Integrated Genomic and Transcriptomic Analysis Improves Disease Classification and Risk Stratification of MDS with Ring Sideroblasts.
Todisco G, Creignou M, Bernard E, ..., Papaemmanuil E, Hellström-Lindberg E
Clin. Cancer Res. 29 (20) 4256-4267 [2023-10-13; online 2023-07-27]
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Genome-wide DNA methylation profiling in Lyme neuroborreliosis reveals altered methylation patterns of HLA genes.
Henningsson AJ, Hellberg S, Lerm M, Sayyab S
J. Infect. Dis. - (-) - [2023-10-12; online 2023-10-12]
Clinical Genomics Linköping [Service]
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Lee H, Langseth CM, Salas SM, ..., Grillo M, Nilsson M
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In Situ Sequencing (ISS) [Technology development]
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Multivalent antigen display on nanoparticle immunogens increases B cell clonotype diversity and neutralization breadth to pneumoviruses.
Ols S, Lenart K, Arcoverde Cerveira R, ..., King NP, Loré K
Immunity 56 (10) 2425-2441.e14 [2023-10-10; online 2023-09-08]
Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH.
Lysenkova Wiklander M, Övernäs E, Lagensjö J, ..., Liljedahl U, Nordlund J
BMC Res Notes 16 (1) 265 [2023-10-10; online 2023-10-10]
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Rueda-Alaña E, Grillo M, Vazquez E, ..., Nilsson M, García-Moreno F
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In Situ Sequencing (ISS) [Service]
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An end-to-end workflow for multiplexed image processing and analysis.
Windhager J, Zanotelli VRT, Schulz D, ..., Bodenmiller B, Eling N
Nat Protoc - (-) - [2023-10-10; online 2023-10-10]
BioImage Informatics [Service]
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Transfer of cetirizine/levocetirizine into human breast milk and estimation of drug exposure to infants through breastfeeding - a human lactation study from the ConcePTION project.
Nordeng H, Wegler C, Lindqvist A, ..., Baranczewski P, Spigset O
Basic Clin Pharmacol Toxicol - (-) - [2023-10-09; online 2023-10-09]
Drug Discovery and Development (DDD) [Collaborative]
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Exploring the differences in serum metabolite profiles after intake of red meat in women with rheumatoid arthritis and a matched control group.
Lindqvist HM, Gjertsson I, Hulander E, Bärebring L, Winkvist A
Eur J Nutr - (-) - [2023-10-09; online 2023-10-09]
Swedish NMR Centre (SNC) [Service]
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Low mutation load in a supergene underpinning alternative male mating strategies in ruff (Calidris pugnax).
Hill J, Enbody ED, Bi H, ..., Widemo F, Andersson L
Mol. Biol. Evol. 40 (12) msad224 [2023-10-06; online 2023-10-06]
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Introgression underlies phylogenetic uncertainty but not parallel plumage evolution in a recent songbird radiation.
Rancilhac L, Enbody ED, Harris R, ..., Andersson L, Alström P
Syst. Biol. - (-) - [2023-10-06; online 2023-10-06]
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Mitochondrial heteroplasmic shifts reveal a positive selection of breast cancer.
Li Y, Sundquist K, Vats S, ..., Sundquist J, Memon AA
J Transl Med 21 (1) 696 [2023-10-05; online 2023-10-05]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Proteomic profiling identifies novel inflammation-related plasma proteins associated with ischemic stroke outcome.
Angerfors A, Brännmark C, Lagging C, ..., Jern C, Stanne TM
J Neuroinflammation 20 (1) 224 [2023-10-04; online 2023-10-04]
Affinity Proteomics Uppsala [Service]
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Metabolomic and transcriptomic analyses identify external conditions and key genes underlying high levels of toxic glycoalkaloids in tubers of stress-sensitive potato cultivars.
Merino I, Guasca AO, Krmela A, ..., Schulzova V, Sitbon F
Front Plant Sci 14 (-) 1210850 [2023-10-04; online 2023-10-04]
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Copy number variations and their effect on the plasma proteome.
Schmitz D, Li Z, Lo Faro V, ..., Rafati N, Johansson Å
Genetics - (-) - [2023-10-04; online 2023-10-04]
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Spatial transcriptomic analysis of virtual prostate biopsy reveals confounding effect of tissue heterogeneity on genomic signatures.
Figiel S, Yin W, Doultsinos D, ..., Cussenot O, Lamb AD
Mol. Cancer 22 (1) 162 [2023-10-03; online 2023-10-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Photo-physical characterization of high triplet yield brominated fluoresceins by transient state (TRAST) spectroscopy.
Demirbay B, Baryshnikov G, Haraldsson M, ..., Ågren H, Widengren J
Methods Appl. Fluoresc. 11 (4) - [2023-10-03; online 2023-10-03]
Chemical Biology Consortium Sweden (CBCS) [Collaborative] Swedish Metabolomics Centre (SMC) [Service]
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Clinical and genetic analyses of a Swedish patient series diagnosed with ataxia.
Gorcenco S, Kafantari E, Wallenius J, ..., Karrman K, Puschmann A
J. Neurol. - (-) - [2023-10-03; online 2023-10-03]
Clinical Genomics Lund [Service]
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The long non-coding RNA LINC00707 interacts with Smad proteins to regulate TGFβ signaling and cancer cell invasion.
Gélabert C, Papoutsoglou P, Golán I, ..., Caja L, Moustakas A
Cell Commun Signal 21 (1) 271 [2023-10-02; online 2023-10-02]
NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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A T cell receptor targeting a recurrent driver mutation in FLT3 mediates elimination of primary human acute myeloid leukemia in vivo.
Giannakopoulou E, Lehander M, Virding Culleton S, ..., Woll PS, Olweus J
Nat Cancer - (-) - [2023-10-02; online 2023-10-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Elevated Adipocyte Membrane Phospholipid Saturation Does Not Compromise Insulin Signaling.
Palmgren H, Petkevicius K, Bartesaghi S, ..., Peng XR, Pilon M
Diabetes 72 (10) 1350-1363 [2023-10-01; online 2022-12-30]
Integrated Microscopy Technologies Gothenburg [Service]
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The dynamics of touch-responsive gene expression in cereals.
Darwish E, Ghosh R, Bentzer J, ..., Sirijovski N, Van Aken O
Plant J. 116 (1) 282-302 [2023-10-00; online 2023-06-08]
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The disease-causing mutation p.F907I reveals a novel pathogenic mechanism for POLγ-related diseases.
Erdinc D, Macao B, Valenzuela S, ..., Wredenberg A, Falkenberg M
Biochim Biophys Acta Mol Basis Dis 1869 (7) 166786 [2023-10-00; online 2023-06-10]
Clinical Genomics Stockholm [Service]
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Similarity in milk microbiota in replicates.
Dahlberg J, Pelve E, Dicksved J
Microbiologyopen 12 (5) e1383 [2023-10-00; online 2023-10-25]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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SARS-CoV-2-related mortality decrease in nursing home residents given multiple COVID-19 boosters.
Blom K, Fjällström P, Molnár C, ..., Forsell MNE, Johansson AF
Lancet Infect Dis 23 (10) e393-e394 [2023-10-00; online 2023-09-13]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Quantification of proteomic profile changes in the hemolymph of crayfish during in vitro coagulation.
Mengal K, Kor G, Siino V, ..., Levander F, Niksirat H
Dev. Comp. Immunol. 147 (-) 104760 [2023-10-00; online 2023-06-16]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Precision medicine in rare diseases: What is next?
Tesi B, Boileau C, Boycott KM, ..., Nordgren A, Lindstrand A
J. Intern. Med. 294 (4) 397-412 [2023-10-00; online 2023-06-01]
Clinical Genomics Stockholm [Collaborative]
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Precision cancer medicine: Concepts, current practice, and future developments.
Edsjö A, Holmquist L, Geoerger B, ..., Siu LL, Stenzinger A
J. Intern. Med. 294 (4) 455-481 [2023-10-00; online 2023-08-28]
Global Proteomics and Proteogenomics [Technology development]
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Origin matters: Using a local reference genome improves measures in population genomics.
Thorburn DJ, Sagonas K, Binzer-Panchal M, ..., Lenz TL, Eizaguirre C
Mol Ecol Resour 23 (7) 1706-1723 [2023-10-00; online 2023-07-25]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Lowering of Circulating Sclerostin May Increase Risk of Atherosclerosis and Its Risk Factors: Evidence From a Genome-Wide Association Meta-Analysis Followed by Mendelian Randomization.
Zheng J, Wheeler E, Pietzner M, ..., Davey Smith G, Tobias JH
Arthritis & rheumatology (Hoboken, N.J.) 75 (10) 1781-1792 [2023-10-00; online 2023-08-03]
Clinical Genomics Gothenburg [Service]
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Increased MYB alternative promoter usage is associated with relapse in acute lymphoblastic leukemia.
Fehr A, Arvidsson G, Nordlund J, ..., Stenman G, Andersson MK
Genes Chromosomes Cancer 62 (10) 597-606 [2023-10-00; online 2023-05-23]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Durability of antireflective SiO2 coatings with closed pore structure
Zäll E, Karlsson S, Järn M, ..., Lundberg P, Wågberg T
Solar Energy Materials and Solar Cells 261 (-) 112521 [2023-10-00; online 2023-10-00]
Integrated Microscopy Technologies Umeå [Service]
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Decontamination of biofilm-contaminated implant surfaces: An in vitro evaluation.
Ichioka Y, Virto L, Nuevo P, ..., Sanz M, Berglundh T
Clin Oral Implants Res 34 (10) 1058-1072 [2023-10-00; online 2023-07-20]
Integrated Microscopy Technologies Gothenburg [Service]
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Circulating soluble IL-6 receptor associates with plaque inflammation but not with atherosclerosis severity and cardiovascular risk.
Edsfeldt A, Gonçalves I, Vigren I, ..., Khan F, Nilsson J
Vascul Pharmacol 152 (-) 107214 [2023-10-00; online 2023-08-25]
Affinity Proteomics Uppsala [Service]
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B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus.
Hedenstedt A, Reid S, Sayadi A, ..., Sandling JK, Leonard D
Lupus Sci Med 10 (2) - [2023-10-00; online 2023-10-17]
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Alterations in the Serum Proteome Following Electroconvulsive Therapy for a Major Depressive Episode: A Longitudinal Multicenter Study.
Göteson A, Clements CC, Juréus A, ..., Pålsson E, Landén M
Biol Psychiatry Glob Open Sci 3 (4) 884-892 [2023-10-00; online 2022-12-12]
Affinity Proteomics Uppsala [Service]
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APP-BACE1 Interaction and Intracellular Localization Regulate Aβ Production in iPSC-Derived Cortical Neurons.
Roselli S, Satir TM, Camacho R, ..., Zetterberg H, Agholme L
Cell Mol Neurobiol 43 (7) 3653-3668 [2023-10-00; online 2023-06-24]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
A glycomic workflow for LC-MS/MS analysis of urine glycosaminoglycan biomarkers in mucopolysaccharidoses.
Nilsson J, Persson A, Vorontsov E, ..., Larson G, Blomqvist M
Glycoconj J 40 (5) 523-540 [2023-10-00; online 2023-07-18]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae).
Steffen K, Proux-Wéra E, Soler L, ..., Sundh J, Cárdenas P
G3 (Bethesda) 13 (10) - [2023-09-30; online 2023-08-25]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Inflammatory Gene Profile and Particle Presence in Peri-Implant Mucosa: a Pilot Study on 9 Patients.
Olander J, Barkarmo S, Hammarström Johansson P, Wennerberg A, Stenport VF
J Oral Maxillofac Res 14 (3) e2 [2023-09-30; online 2023-09-30]
Integrated Microscopy Technologies Gothenburg [Service]
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Targeting Toll-like receptor-driven systemic inflammation by engineering an innate structural fold into drugs.
Petruk G, Puthia M, Samsudin F, ..., Lindstedt S, Schmidtchen A
Nat Commun 14 (1) 6097 [2023-09-29; online 2023-09-29]
Clinical Genomics Lund [Service] Structural Proteomics [Collaborative]
PubMed DOI Crossref
Community-wide genome sequencing reveals 30 years of Darwin's finch evolution.
Enbody ED, Sendell-Price AT, Sprehn CG, ..., Grant PR, Andersson L
Science 381 (6665) eadf6218 [2023-09-29; online 2023-09-29]
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Oral fungal profiling and risk of nasopharyngeal carcinoma: a population-based case-control study.
Chen Y, Li W, Chang ET, ..., Zhang Z, Ye W
EBioMedicine 96 (-) 104813 [2023-09-28; online 2023-09-28]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
The relative impact of parental and current environment on plant transcriptomes depends on type of stress and genotype.
Earley TS, Feiner N, Alvarez MF, Coolon JD, Sultan SE
Proc. Biol. Sci. 290 (2007) 20230824 [2023-09-27; online 2023-09-27]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Single-cell transcriptomics delineates the immune cell landscape in equine lower airways and reveals upregulation of FKBP5 in horses with asthma.
Riihimäki M, Fegraeus K, Nordlund J, ..., Hellman L, Raine A
Sci Rep 13 (1) 16261 [2023-09-27; online 2023-09-27]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Collaborative] NGI Single cell [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort during 2022-2023.
Haars J, Palanisamy N, Wallin F, ..., Kaden R, Lennerstrand J
Microorganisms 11 (10) - [2023-09-27; online 2023-09-27]
Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Exploiting solid-state dynamic nuclear polarization NMR spectroscopy to establish the spatial distribution of polymorphic phases in a solid material.
Cousin SF, Hughes CE, Ziarelli F, ..., Pinon AC, Thureau P
Chem. Sci. 14 (37) 10121-10128 [2023-09-27; online 2023-06-23]
Swedish NMR Centre (SNC) [Technology development]
PubMed DOI Crossref
CO2 Mineralization by MgO Nanocubes in Nanometric Water Films.
Luong NT, Veyret N, Boily JF
ACS Appl Mater Interfaces 15 (38) 45055-45063 [2023-09-27; online 2023-09-14]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Unraveling mucolipidosis type III gamma through whole genome sequencing in late-onset retinitis pigmentosa: a case report.
De Geer K, Mascianica K, Naess K, ..., Lindstrand A, Björck E
BMC Ophthalmol 23 (1) 394 [2023-09-26; online 2023-09-26]
Clinical Genomics Stockholm [Service]
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The draft genome of the microscopic Nemertoderma westbladi sheds light on the evolution of Acoelomorpha genomes.
Abalde S, Tellgren-Roth C, Heintz J, Vinnere Pettersson O, Jondelius U
Front Genet 14 (-) 1244493 [2023-09-26; online 2023-09-26]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Single-cell multiomics of human fetal hematopoiesis define a developmental-specific population and a fetal signature.
Sommarin MNE, Olofzon R, Palo S, ..., Karlsson G, Böiers C
Blood Adv 7 (18) 5325-5340 [2023-09-26; online 2023-06-28]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Combined GLUT1 and OXPHOS inhibition eliminates acute myeloid leukemia cells by restraining their metabolic plasticity.
Rodriguez-Zabala M, Ramakrishnan R, Reinbach K, ..., Woods NB, Järås M
Blood Adv 7 (18) 5382-5395 [2023-09-26; online 2023-07-28]
Clinical Genomics Lund [Service] Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Molecular anatomy of adult mouse leptomeninges.
Pietilä R, Del Gaudio F, He L, ..., Andrae J, Betsholtz C
Neuron - (-) - [2023-09-25; online 2023-09-25]
Bioinformatics Support for Computational Resources [Service]
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Fast and sensitive validation of fusion transcripts in whole-genome sequencing data.
Hafstað V, Häkkinen J, Persson H
BMC Bioinformatics 24 (1) 359 [2023-09-23; online 2023-09-23]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
A subset of type-II collagen-binding antibodies prevents experimental arthritis by inhibiting FCGR3 signaling in neutrophils.
Xu Z, Xu B, Lundström SL, ..., Zubarev RA, Holmdahl R
Nat Commun 14 (1) 5949 [2023-09-23; online 2023-09-23]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
The microbial biodiversity at the archeological site of Tel Megiddo (Israel).
Zhang Y, Ruff SE, Oskolkov N, ..., Mason CE, Elhaik E
Front Microbiol 14 (-) 1253371 [2023-09-22; online 2023-09-22]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Multivalent design of the monoclonal SynO2 antibody improves binding strength to soluble α-Synuclein aggregates.
Petersen I, Ali MI, Petrovic A, ..., Bondza S, Hultqvist G
MAbs 15 (1) 2256668 [2023-09-22; online 2023-09-22]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Comprehensive proteomics and meta-analysis of COVID-19 host response.
Babačić H, Christ W, Araújo JE, ..., Klingström J, Pernemalm M
Nat Commun 14 (1) 5921 [2023-09-22; online 2023-09-22]
Global Proteomics and Proteogenomics [Collaborative]
PubMed DOI Crossref
Selected β-glucans act as immune-training agents by improving anti-mycobacterial activity in human macrophages - a pilot study.
Braian C, Karlsson L, Das J, Lerm M
J Innate Immun 15 (1) 751-764 [2023-09-21; online 2023-09-21]
Clinical Genomics Linköping [Collaborative]
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Non-classical HLA-E restricted CMV 15-mer peptides are recognized by adaptive NK cells and induce memory responses.
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Nat Commun 14 (1) 5636 [2023-09-13; online 2023-09-13]
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Swedish NMR Centre (SNC) [Service]
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Curr. Biol. 33 (17) 3571-3584.e6 [2023-09-11; online 2023-08-02]
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Glycoproteomics and MS Proteomics [Collaborative]
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Dorvall M, Pedersen A, Dumanski JP, ..., Stanne TM, Jern C
Stroke 54 (9) 2434-2437 [2023-09-00; online 2023-07-19]
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Phytopathology 113 (9) 1788-1798 [2023-09-00; online 2023-11-01]
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Bioinformatics Support for Computational Resources [Service]
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Affinity Proteomics Uppsala [Service]
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Metab. Eng. 79 (-) 192-202 [2023-09-00; online 2023-08-22]
Chalmers Mass Spectrometry Infrastructure [Service]
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Burnett HA, Bieker VC, Le Moullec M, ..., Hansen BB, Martin MD
Evol Appl 16 (9) 1531-1548 [2023-09-00; online 2023-08-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Chromatin accessibility, not 5mC methylation covaries with partial dosage compensation in crows.
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NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Breast Milk Oligosaccharides Contain Immunomodulatory Glucuronic Acid and LacdiNAc.
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An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants.
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Clinical Genomics Lund [Service]
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The Chlamydia effector CpoS modulates the inclusion microenvironment and restricts the interferon response by acting on Rab35.
Meier K, Jachmann LH, Türköz G, ..., Kroemer G, Sixt BS
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Chemical Biology Consortium Sweden (CBCS) [Service]
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Global Proteomics and Proteogenomics [Technology development]
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Apilactobacillus kunkeei releases RNA-associated membrane vesicles and proteinaceous nanoparticles.
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Swedish NMR Centre (SNC) [Service]
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Cells 12 (17) - [2023-08-28; online 2023-08-28]
Global Proteomics and Proteogenomics [Service]
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O304 ameliorates hyperglycemia in mice by dually promoting muscle glucose effectiveness and preserving β-cell function.
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Bioinformatics Support for Computational Resources [Service]
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Long-read whole-genome analysis of human single cells.
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Nat Commun 14 (1) 5164 [2023-08-24; online 2023-08-24]
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Nat Commun 14 (1) 5138 [2023-08-23; online 2023-08-23]
Swedish NMR Centre (SNC) [Collaborative]
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Swedish NMR Centre (SNC) [Service]
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Inhibition of high level E2F in a RB1 proficient MYCN overexpressing chicken retinoblastoma model normalizes neoplastic behaviour.
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Contrasting response of microeukaryotic and bacterial communities to the interplay of seasonality and local stressors in shallow soda lakes.
Márton Z, Csitári B, Felföldi T, ..., Szabó A, Székely AJ
FEMS Microbiol. Ecol. 99 (9) - [2023-08-22; online 2023-08-17]
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Bioinformatics Support for Computational Resources [Service] Chemical Biology Consortium Sweden (CBCS) [Service]
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Insights into cellular behavior and micromolecular communication in urothelial micrografts.
Juul N, Willacy O, Mamand DR, ..., Chamorro CI, Fossum M
Sci Rep 13 (1) 13589 [2023-08-21; online 2023-08-21]
Global Proteomics and Proteogenomics [Service]
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The acute effect of different NAD+ precursors included in the combined metabolic activators.
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Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation.
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Microb. Cell Fact. 22 (1) 160 [2023-08-19; online 2023-08-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Multiplexed Guide RNA Expression Leads to Increased Mutation Frequency in Targeted Window Using a CRISPR-Guided Error-Prone DNA Polymerase in Saccharomyces cerevisiae.
Gossing M, Limeta A, Skrekas C, ..., Siewers V, David F
ACS Synth Biol 12 (8) 2271-2277 [2023-08-18; online 2023-07-24]
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Decoding pancreatic endocrine cell differentiation and β cell regeneration in zebrafish.
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Bacterial bioindicators enable biological status classification along the continental Danube river.
Fontaine L, Pin L, Savio D, ..., Farnleitner AH, Eiler A
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Mahjani B, Klei L, Buxbaum Grice AS, ..., Buxbaum JD, Grice DE
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Transposable element insertions in 1000 Swedish individuals.
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Hank EC, D'Arcy-Evans N, Wallner O, ..., de Vega M, Michel M
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Chemical Biology Consortium Sweden (CBCS) [Service]
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Spatial lipidomics reveals brain region-specific changes of sulfatides in an experimental MPTP Parkinson's disease primate model.
Kaya I, Nilsson A, Luptáková D, ..., Bezard E, Andrén PE
NPJ Parkinsons Dis 9 (1) 118 [2023-07-26; online 2023-07-26]
Spatial Mass Spectrometry [Technology development]
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Li C, Sun C, Lohcharoenkal W, ..., Sonkoly E, Pivarcsi A
Cell Death Discov 9 (1) 260 [2023-07-26; online 2023-07-26]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Blood Adv - (-) - [2023-07-24; online 2023-07-24]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
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An Okinawan-Based Nordic Diet Leads to Profound Effects on Gut Microbiota and Plasma Metabolites Linked to Glucose and Lipid Metabolism.
Manoharan L, Roth B, Bang C, Stenlund H, Ohlsson B
Nutrients 15 (14) - [2023-07-24; online 2023-07-24]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] Swedish Metabolomics Centre (SMC) [Collaborative]
PubMed DOI Crossref
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Fridolfsson E, Bunse C, Lindehoff E, ..., Legrand C, Hylander S
Sci Rep 13 (1) 11865 [2023-07-22; online 2023-07-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
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Guasconi D, Juhanson J, Clemmensen KE, ..., Roth N, Fransson P
FEMS Microbiol. Ecol. 99 (8) - [2023-07-21; online 2023-07-21]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
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Lawenius L, Cowardin C, Grahnemo L, ..., Sjögren K, Ohlsson C
Gut Microbes 15 (1) 2236755 [2023-07-21; online 2023-07-21]
Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Thumb-domain dynamics modulate the functional repertoire of DNA-Polymerase IV (DinB).
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Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Survivin prevents the polycomb repressor complex 2 from methylating histone 3 lysine 27.
Jensen M, Chandrasekaran V, García-Bonete MJ, ..., Bokarewa I M, Katona G
iScience 26 (7) 106976 [2023-07-21; online 2023-05-29]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
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Gravina G, Ardalan M, Chumak T, ..., Hellström A, Mallard C
iScience 26 (7) 107217 [2023-07-21; online 2023-06-27]
Glycoproteomics and MS Proteomics [Service]
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Ginja C, Guimarães S, da Fonseca RR, ..., Pires AE, Valenzuela-Lamas S
iScience 26 (7) 107196 [2023-07-21; online 2023-06-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Chen QS, Bergman O, Ziegler L, ..., Gigante B, IMPROVE study group
Cardiovasc. Res. - (-) - [2023-07-21; online 2023-07-21]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples.
Iwaszkiewicz-Eggebrecht E, Łukasik P, Buczek M, ..., Ronquist F, Miraldo A
PLoS ONE 18 (7) e0286272 [2023-07-19; online 2023-07-19]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Endophytic Beauveria bassiana induces biosynthesis of flavonoids in oilseed rape following both seed inoculation and natural colonization.
Muola A, Birge T, Helander M, ..., Saikkonen K, Fuchs B
Pest Manag Sci - (-) - [2023-07-19; online 2023-07-19]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature.
Lihavainen J, Šimura J, Bag P, ..., Ljung K, Jansson S
Nat Commun 14 (1) 4288 [2023-07-18; online 2023-07-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
ReprogrammingYarrowia lipolyticametabolism for efficient synthesis of itaconic acid from flask to semi-pilot scale
Fu J, Zaghen S, Lu H, ..., Di Bartolomeo F, Kerkhoven EJ
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Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Phospholipid Removal for Enhanced Chemical Exposomics in Human Plasma
Sdougkou K, Xie H, Papazian S, ..., Bergdahl IA, Martin JW
Environ. Sci. Technol. 57 (28) 10173-10184 [2023-07-18; online 2023-07-03]
Exposomics [Technology development]
PubMed DOI Crossref
Next generation pan-cancer blood proteome profiling using proximity extension assay.
Álvez MB, Edfors F, von Feilitzen K, ..., Fagerberg L, Uhlén M
Nat Commun 14 (1) 4308 [2023-07-18; online 2023-07-18]
Affinity Proteomics Uppsala [Collaborative] Bioinformatics Support for Computational Resources [Service] NGI Proteomics [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Comparative transcriptome profiling provides insights into the growth promotion activity of Pseudomonas fluorescens strain SLU99 in tomato and potato plants.
Hanifah NASB, Ghadamgahi F, Ghosh S, ..., Vetukuri RR, Kalyandurg PB
Front Plant Sci 14 (-) 1141692 [2023-07-18; online 2023-07-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Lileikyte G, Bakochi A, Ali A, ..., Malmström J, Nielsen N
Intensive Care Med Exp 11 (1) 43 [2023-07-17; online 2023-07-17]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Impact of xylan on field productivity and wood saccharification properties in aspen.
Derba-Maceluch M, Sivan P, Donev EN, ..., Jönsson LJ, Mellerowicz EJ
Front Plant Sci 14 (-) 1218302 [2023-07-17; online 2023-07-17]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Biosensor-Assisted Laboratory Evolution of Malonyl-CoA production inSaccharomyces cerevisiae
Ferreira R, Hedin KA, Nielsen J, David F
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Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Restoring tumor immunogenicity with dendritic cell reprogramming.
Zimmermannova O, Ferreira AG, Ascic E, ..., Svane IM, Pereira CF
Sci Immunol 8 (85) eadd4817 [2023-07-14; online 2023-07-07]
Clinical Genomics Lund [Service]
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Rastegar B, Andersson N, Petersson A, ..., Holmquist Mengelbier L, Gisselsson D
Clin. Cancer Res. 29 (14) 2668-2677 [2023-07-14; online 2023-05-04]
Clinical Genomics Lund [Service]
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Absence of gut microbiota reduces neonatal survival and exacerbates liver disease in Cyp2c70-deficient mice with a human-like bile acid composition.
Sjöland W, Wahlström A, Makki K, ..., Bäckhed F, Marschall HU
Clin Sci (Lond) 137 (13) 995-1011 [2023-07-14; online 2023-06-29]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Irradiation and lithium treatment alter the global DNA methylation pattern and gene expression underlying a shift from gliogenesis towards neurogenesis in human neural progenitors.
Neofytou C, Backlund A, Blomgren K, Hermanson O
Transl Psychiatry 13 (1) 258 [2023-07-13; online 2023-07-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Quantitative Nanoscale Secondary Ion Mass Spectrometry (NanoSIMS) Imaging of Individual Vesicles to Investigate the Relation between Fraction of Chemical Release and Vesicle Size.
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Angew. Chem. Int. Ed. Engl. 62 (28) e202304098 [2023-07-10; online 2023-06-05]
Integrated Microscopy Technologies Gothenburg [Technology development]
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Giant spin-splitting and tunable spin-momentum locked transport in room temperature collinear antiferromagnetic semimetallic CrO monolayer
Chen X, Wang D, Li L, Sanyal B
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Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Autologous hematopoietic stem cell transplantation significantly alters circulating ceramides in peripheral blood of relapsing-remitting multiple sclerosis patients.
Vaivade A, Wiberg A, Khoonsari PE, ..., Burman J, Kultima K
Lipids Health Dis 22 (1) 97 [2023-07-07; online 2023-07-07]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A new G-quadruplex-specific photosensitizer inducing genome instability in cancer cells by triggering oxidative DNA damage and impeding replication fork progression.
Deiana M, Andrés Castán JM, Josse P, ..., Cabanetos C, Sabouri N
Nucleic Acids Res. 51 (12) 6264-6285 [2023-07-07; online 2023-05-16]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
High-level in vitro resistance to gentamicin acquired in a stepwise manner in Neisseria gonorrhoeae.
Golparian D, Jacobsson S, Holley CL, Shafer WM, Unemo M
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Clinical Genomics Örebro [Collaborative]
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Effects of FODMAPs and Gluten on Gut Microbiota and Their Association with the Metabolome in Irritable Bowel Syndrome: A Double-Blind, Randomized, Cross-Over Intervention Study.
Nordin E, Hellström PM, Dicksved J, ..., Landberg R, Brunius C
Nutrients 15 (13) - [2023-07-05; online 2023-07-05]
Bioinformatics Support for Computational Resources [Service] Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.
Potdar S, Ianevski F, Ianevski A, ..., Aittokallio T, Saarela J
Nucleic Acids Res. 51 (W1) W57-W61 [2023-07-05; online 2023-05-14]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
A chromosome-level genome assembly for the Rock Ptarmigan (Lagopus muta).
Squires TE, Rödin-Mörch P, Formenti G, ..., Höglund J, Magnússon KP
G3 (Bethesda) 13 (7) - [2023-07-05; online 2023-05-04]
Bioinformatics Support for Computational Resources [Service]
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Vascular endothelial growth factor-D plasma levels and VEGFD genetic variants are independently associated with outcomes in patients with cardiovascular disease.
Davidsson P, Eketjäll S, Eriksson N, ..., White H, Wallentin L
Cardiovasc. Res. 119 (7) 1596-1605 [2023-07-04; online 2023-03-05]
Affinity Proteomics Uppsala [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cardiomyocyte-specific PCSK9 deficiency compromises mitochondrial bioenergetics and heart function.
Laudette M, Lindbom M, Arif M, ..., Levin MC, Borén J
Cardiovasc. Res. 119 (7) 1537-1552 [2023-07-04; online 2023-03-08]
Integrated Microscopy Technologies Gothenburg [Service]
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Bone mineral density loci specific to the skull portray potential pleiotropic effects on craniosynostosis.
Medina-Gomez C, Mullin BH, Chesi A, ..., Kague E, Rivadeneira F
Commun Biol 6 (1) 691 [2023-07-04; online 2023-07-04]
Clinical Genomics Gothenburg [Collaborative]
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Physical Activity, Sedentary Behavior, and Type 2 Diabetes: Mendelian Randomization Analysis.
Yuan S, Li X, Liu Q, ..., Burgess S, Larsson SC
J Endocr Soc 7 (8) bvad090 [2023-07-03; online 2023-06-26]
Affinity Proteomics Uppsala [Service]
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Loss of ctnnd2b affects neuronal differentiation and behavior in zebrafish.
Vaz R, Edwards S, Dueñas-Rey A, Hofmeister W, Lindstrand A
Front. Neurosci. 17 (-) 1205653 [2023-07-03; online 2023-07-03]
Integrated Microscopy Technologies Stockholm [Service]
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Incidence and Characteristics in Children with Post-COVID-19 Condition in Sweden.
Bygdell M, Kindblom JM, Martikainen J, Li H, Nyberg F
JAMA Netw Open 6 (7) e2324246 [2023-07-03; online 2023-07-03]
Clinical Genomics Gothenburg [Collaborative]
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Domain landscapes of somatic NF1 mutations in pheochromocytoma and paraganglioma.
Tabebi M, Frikha F, Volpe M, Gimm O, Söderkvist P
Gene 872 (-) 147432 [2023-07-01; online 2023-04-14]
Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Arabinoxylan supplemented bread: From extraction of fibers to effect of baking, digestion, and fermentation.
Zhang D, Rudjito RC, Pietiäinen S, ..., Vilaplana F, Jiménez-Quero A
Food Chem 413 (-) 135660 [2023-07-01; online 2023-02-10]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Whole exome sequencing of FFPE samples-expanding the horizon of forensic molecular autopsies.
Adolfsson E, Kling D, Gunnarsson C, ..., Gréen H, Gréen A
Int J Legal Med 137 (4) 1215-1234 [2023-07-00; online 2022-11-08]
Clinical Genomics Örebro [Collaborative]
PubMed DOI Crossref
Urodrill - a novel MRI-guided endoscopic biopsy technique to sample and molecularly classify muscle-invasive bladder cancer without fractionating the specimen during transurethral resection.
Eriksson P, Berg J, Bernardo C, ..., Zackrisson S, Liedberg F
Eur Urol Open Sci 53 (-) 78-82 [2023-07-00; online 2023-06-02]
Clinical Genomics Lund [Service]
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The organization of double-stranded RNA in the chikungunya virus replication organelle.
Laurent T, Carlson L
PLoS Negl Trop Dis 17 (7) e0011404 [2023-07-00; online 2023-07-05]
Cryo-EM [Service]
DOI Crossref
The influence of the capping ligands on the optoelectronic performance, morphology, and ion liberation of CsPbBr3 perovskite quantum dots
Liu Y, Tang S, Gao Z, ..., Edman L, Wang J
Nano Res. 16 (7) 10626-10633 [2023-07-00; online 2023-04-19]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Role of the supports during phosphorus poisoning of diesel oxidation catalysts
Ho PH, Shao J, Yao D, ..., Creaser D, Olsson L
Chemical Engineering Journal 468 (-) 143548 [2023-07-00; online 2023-07-00]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Proteomic and transcriptomic screening demonstrates increased mast cell-derived CCL23 in systemic mastocytosis.
Söderlund S, Boey D, van Midden W, ..., Dahlin JS, Ungerstedt J
J. Allergy Clin. Immunol. 152 (1) 205-213 [2023-07-00; online 2023-02-21]
NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Plasma levels of per- and polyfluoroalkyl substances (PFAS) are associated with altered levels of proteins previously linked to inflammation, metabolism and cardiovascular disease.
Dunder L, Salihovic S, Lind PM, Elmståhl S, Lind L
Environ Int 177 (-) 107979 [2023-07-00; online 2023-05-24]
Affinity Proteomics Uppsala [Service]
DOI Crossref
N-Arylation of primary and tertiary sulfonimidamides (SIAs) with benzyne precursors under transition metal-free conditions
Ambala S, Govender KB, Rajbongshi KK, ..., Naicker T, Arvidsson PI
Tetrahedron Letters 124 (-) 154583 [2023-07-00; online 2023-07-00]
Drug Discovery and Development (DDD) [Technology development]
PubMed DOI Crossref
Multiplex protein analysis and ensemble machine learning methods of fine needle aspirates from prostate cancer patients reveal potential diagnostic signatures associated with tumour grade.
Röbeck P, Franzén B, Cantera-Ahlman R, ..., Häggman M, Ladjevardi S
Cytopathology 34 (4) 286-294 [2023-07-00; online 2023-03-20]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Mucosal immune responses following a fourth SARS-CoV-2 vaccine dose.
Bladh O, Marking U, Havervall S, ..., Klingström J, Thålin C
Lancet Microbe 4 (7) e488 [2023-07-00; online 2023-04-20]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Metabolic profiles reflect weight loss maintenance and the composition of diet after very-low-energy diet.
Näätänen M, Kårlund A, Mikkonen S, ..., Hanhineva K, Kolehmainen M
Clin Nutr 42 (7) 1126-1141 [2023-07-00; online 2023-05-17]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Individualised human phenotype ontology gene panels improve clinical whole exome and genome sequencing analytical efficacy in a cohort of developmental and epileptic encephalopathies.
Henry OJ, Stödberg T, Båtelson S, ..., Stranneheim H, Wedell A
Mol Genet Genomic Med 11 (7) e2167 [2023-07-00; online 2023-03-26]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Immunological protein profiling of first-episode psychosis patients identifies CSF and blood biomarkers correlating with disease severity.
Eren F, Schwieler L, Orhan F, ..., Engberg G, Erhardt S
Brain, Behavior, and Immunity 111 (-) 376-385 [2023-07-00; online 2023-05-04]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Human resident liver myeloid cells protect against metabolic stress in obesity.
Barreby E, Strunz B, Nock S, ..., Chen P, Aouadi M
Nat Metab 5 (7) 1188-1203 [2023-07-00; online 2023-07-06]
Spatial Proteomics [Service]
DOI Crossref
High temperature interactions between K-rich biomass ash and MgO-based refractories
Wagri NK, Carlborg M, Eriksson M, ..., Broström M, Andersson BM
Journal of the European Ceramic Society 43 (8) 3770-3777 [2023-07-00; online 2023-07-00]
Integrated Microscopy Technologies Umeå [Service]
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Forest Fire Influence on Tomicus piniperda-Associated Fungal Communities and Phloem Nutrient Availability of Colonized Pinus sylvestris.
Kluting K, Strid Y, Six D, Rosling A
Microb. Ecol. 86 (1) 224-239 [2023-07-00; online 2022-07-13]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Forensic prediction of sex, age, height, body mass index, hip-to-waist ratio, smoking status and lipid lowering drugs using epigenetic markers and plasma proteins.
Llobet MO, Johansson Å, Gyllensten U, Allen M, Enroth S
Forensic Sci Int Genet 65 (-) 102871 [2023-07-00; online 2023-04-07]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Expanding the phenotype of Seckel syndrome associated with biallelic loss-of-function variants in CEP63.
Pekkola Pacheco N, Pettersson M, Lindstrand A, Grigelioniene G
Am. J. Med. Genet. A 191 (7) 1929-1934 [2023-07-00; online 2023-04-05]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Esr1+ hypothalamic-habenula neurons shape aversive states.
Calvigioni D, Fuzik J, Le Merre P, ..., Carlén M, Meletis K
Nat. Neurosci. 26 (7) 1245-1255 [2023-07-00; online 2023-06-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Environmental stress during larval development induces DNA methylation shifts in the migratory painted lady butterfly (Vanessa cardui).
Boman J, Zhu Y, Höök L, ..., Talavera G, Backström N
Mol. Ecol. 32 (13) 3513-3523 [2023-07-00; online 2023-04-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Core genome multilocus sequence typing (cgMLST) confirms systemic spread of avian pathogenic Escherichia coli (APEC) in broilers with cellulitis.
Jonare L, Östlund E, Söderlund R, ..., Aspán A, Jansson DS
Vet. Microbiol. 282 (-) 109755 [2023-07-00; online 2023-04-24]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Complex life cycles drive community assembly through immigration and adaptive diversification.
Saltini M, Vasconcelos P, Rueffler C
Ecol. Lett. 26 (7) 1084-1094 [2023-07-00; online 2023-05-01]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Actionable cancer vulnerability due to translational arrest, p53 aggregation and ribosome biogenesis stress evoked by the disulfiram metabolite CuET.
Kanellis DC, Zisi A, Skrott Z, ..., Lindström MS, Bartek J
Cell Death Differ. 30 (7) 1666-1678 [2023-07-00; online 2023-05-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A phase I prospective, non-randomized trial of autologous dendritic cell-based cryoimmunotherapy in patients with metastatic castration-resistant prostate cancer.
Thomsen LCV, Honoré A, Reisæter LAR, ..., Kalland KH, Beisland C
Cancer Immunol. Immunother. 72 (7) 2357-2373 [2023-07-00; online 2023-03-20]
Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
A model of photosynthetic CO2 assimilation in C3 leaves accounting for respiration and energy recycling by the plastidial oxidative pentose phosphate pathway.
Wieloch T, Augusti A, Schleucher J
New Phytol. 239 (2) 518-532 [2023-07-00; online 2023-05-23]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Transport Properties of Protic Ionic Liquids Based on Triazolium and Imidazolium: Development of an Air-Free Conductivity Setup.
Morais EM, Idström A, Evenäs L, Martinelli A
Molecules 28 (13) - [2023-06-30; online 2023-06-30]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Single cell-resolutionin situsequencing elucidates spatial dynamics of multiple sclerosis lesion and disease evolution
Langseth CM, Kukanja P, Rubio Rodríguez-Kirby LA, ..., Nilsson M, Castelo-Branco G
- - (-) - [2023-06-30; online 2023-06-30]
Bioinformatics Support for Computational Resources [Service] In Situ Sequencing (ISS) [Service]
PubMed DOI Crossref
Elevated levels of MMP12 sourced from macrophages are associated with poor prognosis in urothelial bladder cancer.
Kerzeli IK, Kostakis A, Türker P, ..., Lord M, Mangsbo SM
BMC Cancer 23 (1) 605 [2023-06-30; online 2023-06-30]
Affinity Proteomics Uppsala [Service]
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Combined effects of isolation temperature and pH on functionality and beany flavor of pea protein isolates for meat analogue applications.
Sajib M, Forghani B, Kumar Vate N, Abdollahi M
Food Chem 412 (-) 135585 [2023-06-30; online 2023-01-27]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Screening autism-associated environmental factors in differentiating human neural progenitors with fractional factorial design-based transcriptomics.
Arora A, Becker M, Marques C, ..., Lanekoff I, Tammimies K
Sci Rep 13 (1) 10519 [2023-06-29; online 2023-06-29]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community.
Massing JC, Fahimipour AK, Bunse C, Pinhassi J, Gross T
mSystems 8 (3) e0002823 [2023-06-29; online 2023-05-31]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic markers associated with bone composition in Rhode Island Red laying hens.
Sallam M, Wilson PW, Andersson B, ..., De Koning DJ, Johnsson M
Genet. Sel. Evol. 55 (1) 44 [2023-06-29; online 2023-06-29]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Restricting Promiscuity of Plant Flavonoid 3'-Hydroxylase and 4'-O-Methyltransferase Improves the Biosynthesis of (2S)-Hesperetin in E. coli.
Liu J, Xiao Z, Zhang S, ..., Chen Y, Shan Y
J. Agric. Food Chem. 71 (25) 9826-9835 [2023-06-28; online 2023-06-13]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
BTK and PLCG2 remain unmutated in one-third of patients with CLL relapsing on ibrutinib.
Bonfiglio S, Sutton LA, Ljungström V, ..., Rosenquist R, Ghia P
Blood Adv 7 (12) 2794-2806 [2023-06-27; online 2023-01-26]
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MBio 14 (3) e0044923 [2023-06-27; online 2023-04-25]
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MgO nanocube hydroxylation by nanometric water films.
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Elife 12 (-) - [2023-06-21; online 2023-06-21]
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Human skin-resident CD8+ T cells require RUNX2 and RUNX3 for induction of cytotoxicity and expression of the integrin CD49a.
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Immunity 56 (6) 1285-1302.e7 [2023-06-13; online 2023-06-02]
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Sci Rep 13 (1) 9043 [2023-06-03; online 2023-06-03]
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The Swedish childhood tumor biobank: systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden.
Díaz de Ståhl T, Shamikh A, Mayrhofer M, ..., Sandgren J, Nistér M
J Transl Med 21 (1) 342 [2023-05-23; online 2023-05-23]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI SNP genotyping [Service] NGI Short read [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Collaborative]
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Limnol Oceanogr Letters - (-) - [2023-05-22; online 2023-05-22]
Swedish Metabolomics Centre (SMC) [Service]
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Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR.
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Cisplatin toxicity is counteracted by the activation of the p38/ATF-7 signaling pathway in post-mitotic C. elegans.
Raj D, Kraish B, Martikainen J, ..., Kao G, Naredi P
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Clinical Genomics Gothenburg [Collaborative] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
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Detoxified synthetic bacterial membrane vesicles as a vaccine platform against bacteria and SARS-CoV-2.
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Front Microbiol 14 (-) 1159811 [2023-05-18; online 2023-05-18]
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Disulfide-Bond-Induced Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.
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Swedish NMR Centre (SNC) [Service]
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Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
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Structural, vibrational, elastic, electronic, and piezoelectric properties of binary <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML">γ<mml:mtext>−</mml:mtext><mml:mrow>GeX</mml:mrow></mml:math> and ternary <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML">γ<mml:mtext>−</mml:mtext><mml:mrow><mml:msub>Ge2</mml:msub>X<mml:msup>X′</mml:msup></mml:mrow></mml:math> monolayers ( <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML">X</mml:math> , <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:msup>X′</mml:msup>=<mml:mi mathvariant="normal">S</mml:math> , Se, and Te)
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Swedish NMR Centre (SNC) [Service]
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Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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J Neuroinflammation 20 (1) 98 [2023-04-27; online 2023-04-27]
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BMC Genomics 24 (1) 205 [2023-04-17; online 2023-04-17]
Bioinformatics Support for Computational Resources [Service]
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Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Chalmers Mass Spectrometry Infrastructure [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Affinity Proteomics Stockholm [Collaborative]
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Swedish NMR Centre (SNC) [Collaborative]
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Swedish NMR Centre (SNC) [Collaborative]
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Swedish NMR Centre (SNC) [Service]
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Swedish NMR Centre (SNC) [Service]
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Linking prokaryotic genome size variation to metabolic potential and environment.
Rodríguez-Gijón A, Buck M, Andersson AF, ..., Nascimento FJA, Garcia SL
ISME COMMUN. 3 (1) 25 [2023-03-27; online 2023-03-27]
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DOI Crossref
Insights into Photosensitized Reactions for Upgrading Lignin
Riddell A, Hynynen J, Baena-Moreno F, ..., Parkås J, Bernin D
ACS Sustainable Chem. Eng. 11 (12) 4850-4859 [2023-03-27; online 2023-03-15]
Swedish NMR Centre (SNC) [Service]
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Deep learning-based segmentation and quantification of podocyte foot process morphology suggests differential patterns of foot process effacement across kidney pathologies.
Unnersjö-Jess D, Butt L, Höhne M, ..., Bozek K, Benzing T
Kidney Int. - (-) - [2023-03-27; online 2023-03-27]
Integrated Microscopy Technologies Stockholm [Collaborative]
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Correlative Chemical Imaging and Spatial Chemometrics Delineate Alzheimer Plaque Heterogeneity at High Spatial Resolution.
Wehrli PM, Ge J, Michno W, ..., Blennow K, Hanrieder J
JACS Au 3 (3) 762-774 [2023-03-27; online 2023-03-07]
Integrated Microscopy Technologies Gothenburg [Service]
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A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration.
Subramanian E, Elewa A, Brito G, ..., Andersson O, Simon A
Dev. Cell 58 (6) 450-460.e6 [2023-03-27; online 2023-03-08]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Simultaneous Ultra-Sensitive Detection of Structural and Single Nucleotide Variants Using Multiplex Droplet Digital PCR in Liquid Biopsies from Children with Medulloblastoma.
Arthur C, Jylhä C, de Ståhl TD, ..., Sandvik U, Tham E
Cancers (Basel) 15 (7) - [2023-03-25; online 2023-03-25]
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Woodward EL, Yang M, Moura-Castro LH, ..., Foijer F, Paulsson K
Nat Commun 14 (1) 1658 [2023-03-25; online 2023-03-25]
Clinical Genomics Lund [Service]
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RNA silencing proteins and small RNAs in oomycete plant pathogens and biocontrol agents.
Piombo E, Kelbessa BG, Sundararajan P, ..., Vetukuri RR, Dubey M
Front Microbiol 14 (-) 1076522 [2023-03-24; online 2023-03-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Prediction model for drug response of acute myeloid leukemia patients.
Trac QT, Pawitan Y, Mou T, ..., Kallioniemi O, Vu TN
NPJ Precis Oncol 7 (1) 32 [2023-03-24; online 2023-03-24]
Bioinformatics Support for Computational Resources [Service]
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Intranasal trimeric sherpabody inhibits SARS-CoV-2 including recent immunoevasive Omicron subvariants.
Mäkelä AR, Uğurlu H, Hannula L, ..., Rissanen I, Saksela K
Nat Commun 14 (1) 1637 [2023-03-24; online 2023-03-24]
Cryo-EM [Service]
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New Dual Inhibitors of Bacterial Topoisomerases with Broad-Spectrum Antibacterial Activity and In Vivo Efficacy against Vancomycin-Intermediate Staphylococcus aureus.
Durcik M, Cotman AE, Toplak Ž, ..., Tomašič T, Peterlin Mašič L
J. Med. Chem. 66 (6) 3968-3994 [2023-03-23; online 2023-03-06]
Drug Discovery and Development (DDD) [Service]
PubMed DOI Crossref
Neutralizing Carbapenem Resistance by Co-Administering Meropenem with Novel β-Lactam-Metallo-β-Lactamase Inhibitors.
Reddy N, Girdhari L, Shungube M, ..., Govender T, Naicker T
Antibiotics (Basel) 12 (4) - [2023-03-23; online 2023-03-23]
Drug Discovery and Development (DDD) [Collaborative]
DOI Crossref
Micro-scale spatial preference and temporal cyclicity linked to foraging in harbour porpoises
Stedt J, Wahlberg M, Carlström J, ..., Oskolkov N, Carlsson P
Mar. Ecol. Prog. Ser. 708 (-) 143-161 [2023-03-23; online 2023-03-23]
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Exposure to nonanoic acid alters small intestinal neuroendocrine tumor phenotype.
Almobarak B, Amlani V, Inge L, ..., Arvidsson Y, Elias E
BMC Cancer 23 (1) 267 [2023-03-23; online 2023-03-23]
Clinical Genomics Gothenburg [Service]
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Evidence for a single, ancient origin of a genus-wide alternative life history strategy.
Tunström K, Woronik A, Hanly JJ, ..., Martin A, Wheat CW
Sci Adv 9 (12) eabq3713 [2023-03-22; online 2023-03-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Correlates of protection and viral load trajectories in omicron breakthrough infections in triple vaccinated healthcare workers.
Marking U, Havervall S, Norin NG, ..., Klingström J, Thålin C
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Serum immuno-oncology markers carry independent prognostic information in patients with newly diagnosed metastatic breast cancer, from a prospective observational study.
Gunnarsdottir FB, Bendahl PO, Johansson A, ..., Bergenfelz C, Larsson AM
Breast Cancer Res. 25 (1) 29 [2023-03-21; online 2023-03-21]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
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Erickson A, Motta A, Kastriti ME, ..., Bonanomi D, Adameyko I
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Integrated Microscopy Technologies Stockholm [Collaborative]
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Complete Reference Genome Sequence of the Clinical Neisseria gonorrhoeae Strain H035, with Resistance to the Novel Antimicrobial Zoliflodacin, Identified in Japan in 2000.
Golparian D, Jacobsson S, Ohnishi M, Unemo M
Microbiol Resour Announc 12 (3) e0113022 [2023-03-16; online 2023-02-28]
Clinical Genomics Örebro [Collaborative]
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Rapid and accurate determination of protein content in North Atlantic seaweed by NIR and FTIR spectroscopies.
Niemi C, Mortensen AM, Rautenberger R, ..., Gorzsás A, Gentili FG
Food Chem 404 (Pt B) 134700 [2023-03-15; online 2022-10-19]
Swedish Metabolomics Centre (SMC) [Service]
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Autoantibodies against PIP4K2B and AKT3 Are Associated with Skin and Lung Fibrosis in Patients with Systemic Sclerosis.
Geroldinger-Simić M, Bayati S, Pohjanen E, ..., Nilsson P, Pin E
Int J Mol Sci 24 (6) - [2023-03-15; online 2023-03-15]
Autoimmunity and Serology Profiling [Collaborative]
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An integrated single cell and spatial transcriptomic map of human white adipose tissue.
Massier L, Jalkanen J, Elmastas M, ..., Rydén M, Mejhert N
Nat Commun 14 (1) 1438 [2023-03-15; online 2023-03-15]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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A proinsulin-dependent interaction between ENPL-1 and ASNA-1 in neurons is required to maintain insulin secretion in C. elegans.
Podraza-Farhanieh A, Raj D, Kao G, Naredi P
Development 150 (6) - [2023-03-15; online 2023-03-20]
Clinical Genomics Gothenburg [Service] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
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Tetramodal Chemical Imaging Delineates the Lipid-Amyloid Peptide Interplay at Single Plaques in Transgenic Alzheimer's Disease Models.
Ge J, Koutarapu S, Jha D, ..., Blennow K, Hanrieder J
Anal. Chem. 95 (10) 4692-4702 [2023-03-14; online 2023-03-01]
Integrated Microscopy Technologies Gothenburg [Service]
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A MITE insertion abolishes the AP3-3 self-maintenance regulatory loop in apetalous flowers of Nigella damascena.
Conde E Silva N, Leguilloux M, Bellec A, ..., Berges H, Deveaux Y
J. Exp. Bot. 74 (5) 1448-1459 [2023-03-13; online 2022-12-14]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization.
Amselem E, Broadwater B, Hävermark T, Johansson M, Elf J
Nat Commun 14 (1) 1336 [2023-03-11; online 2023-03-11]
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Proteome integral solubility alteration high-throughput proteomics assay identifies Collectin-12 as a non-apoptotic microglial caspase-3 substrate.
Grabert K, Engskog-Vlachos P, Škandík M, ..., Joseph B, Cheray M
Cell Death Dis 14 (3) 192 [2023-03-11; online 2023-03-11]
Chemical Proteomics [Collaborative]
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In Vitro and In Vivo Development of a β-Lactam-Metallo-β-Lactamase Inhibitor: Targeting Carbapenem-Resistant Enterobacterales.
Peters BK, Reddy N, Shungube M, ..., Naicker T, Govender T
ACS Infect Dis 9 (3) 486-496 [2023-03-10; online 2023-02-14]
Drug Discovery and Development (DDD) [Collaborative]
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Enhanced glycerol assimilation and lipid production in Rhodotorula toruloides CBS14 upon addition of hemicellulose primarily correlates with early transcription of energy-metabolism-related genes.
Martín-Hernández GC, Chmielarz M, Müller B, ..., Hölzer M, Passoth V
Biotechnol Biofuels Bioprod 16 (1) 42 [2023-03-10; online 2023-03-10]
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Tast Lahti E, Karamehmedovic N, Riedel H, ..., Zajac M, Jernberg C
Front Public Health 11 (-) 1129083 [2023-03-08; online 2023-03-08]
Clinical Genomics Stockholm [Service]
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Comprehensive transcriptome analysis of different potato cultivars provides insight into early blight disease caused by Alternaria solani.
Sajeevan RS, Abdelmeguid I, Saripella GV, Lenman M, Alexandersson E
BMC Plant Biol. 23 (1) 130 [2023-03-08; online 2023-03-08]
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Melatonin Prescription in Children and Adolescents in Relation to Body Weight and Age.
Kimland EE, Dahlén E, Martikainen J, Célind J, Kindblom JM
Pharmaceuticals (Basel) 16 (3) - [2023-03-06; online 2023-03-06]
Clinical Genomics Gothenburg [Collaborative]
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Identification of phenotypically, functionally, and anatomically distinct stromal niche populations in human bone marrow based on single-cell RNA sequencing.
Li H, Bräunig S, Dhapolar P, ..., Lang S, Scheding S
Elife 12 (-) - [2023-03-06; online 2023-03-06]
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Venetoclax-Resistant T-ALL Cells Display Distinct Cancer Stem Cell Signatures and Enrichment of Cytokine Signaling.
Shah K, Al Ashiri L, Nasimian A, Ahmed M, Kazi JU
Int J Mol Sci 24 (5) - [2023-03-05; online 2023-03-05]
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miRNome and Proteome Profiling of Human Keratinocytes and Adipose Derived Stem Cells Proposed miRNA-Mediated Regulations of Epidermal Growth Factor and Interleukin 1-Alpha.
Shahin H, Abdallah S, Das J, ..., Elmasry M, El-Serafi AT
Int J Mol Sci 24 (5) - [2023-03-04; online 2023-03-04]
Clinical Genomics Linköping [Collaborative]
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A highly efficient transcriptome-based biosynthesis of non-ethanol chemicals in Crabtree negative Saccharomyces cerevisiae.
Yao Z, Guo Y, Wang H, ..., Nielsen J, Dai Z
Biotechnol Biofuels Bioprod 16 (1) 37 [2023-03-04; online 2023-03-04]
Chalmers Mass Spectrometry Infrastructure [Service]
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Short term starvation potentiates the efficacy of chemotherapy in triple negative breast cancer via metabolic reprogramming.
Pateras IS, Williams C, Gianniou DD, ..., Gilthorpe JD, Frisan T
J Transl Med 21 (1) 169 [2023-03-03; online 2023-03-03]
Swedish Metabolomics Centre (SMC) [Service]
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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.
Rifkin RF, Vikram S, Alcorta J, ..., Schlebusch CM, Lombard M
Commun Biol 6 (1) 240 [2023-03-03; online 2023-03-03]
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ARF suppression by MYC but not MYCN confers increased malignancy of aggressive pediatric brain tumors.
Mainwaring OJ, Weishaupt H, Zhao M, ..., Hutter S, Swartling FJ
Nat Commun 14 (1) 1221 [2023-03-03; online 2023-03-03]
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Onuț-Brännström I, Stairs CW, Campos KIA, ..., Bass D, Burki F
Genome Biol Evol 15 (3) - [2023-03-03; online 2023-02-16]
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Genome-wide analysis identifies genetic effects on reproductive success and ongoing natural selection at the FADS locus.
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Pushparaj P, Nicoletto A, Dopico XC, ..., Corcoran M, Karlsson Hedestam GB
Front Virol 3 (-) 1128253 [2023-03-01; online 2023-04-13]
Structural Proteomics [Collaborative]
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Clonal relationships of memory B cell subsets in autoimmune mice.
Aranburu A, Engström E, Gerasimcik N, ..., Grimsholm O, Mårtensson IL
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Clinical Genomics Gothenburg [Service]
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Subtyping of cardiac amyloidosis by mass spectrometry-based proteomics of endomyocardial biopsies.
Noborn F, Thomsen C, Vorontsov E, ..., Oldfors A, Larson G
Amyloid 30 (1) 96-108 [2023-03-00; online 2022-10-09]
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Structural basis of mitochondrial membrane bending by the I-II-III2-IV2 supercomplex.
Mühleip A, Flygaard RK, Baradaran R, ..., Sharma V, Amunts A
Nature 615 (7954) 934-938 [2023-03-00; online 2023-03-22]
Cryo-EM [Service]
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Leenheer D, Moreno AB, Paranjape K, ..., Ginevra C, Guy L
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Stratmann S, Vesterlund M, Umer HM, ..., Lehtiö J, Holmfeldt L
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Martin Cerezo ML, López S, van Dorp L, ..., Henriksen R, Wright D
Heredity (Edinb) 130 (3) 154-162 [2023-03-00; online 2023-02-01]
Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Occupational inhalable agents constitute major risk factors for rheumatoid arthritis, particularly in the context of genetic predisposition and smoking.
Tang B, Liu Q, Ilar A, ..., Alfredsson L, Jiang X
Ann. Rheum. Dis. 82 (3) 316-323 [2023-03-00; online 2022-12-06]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Multiple introgressions shape mitochondrial evolutionary history in Drosophila paulistorum and the Drosophila willistoni group.
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Mol. Phylogenet. Evol. 180 (-) 107683 [2023-03-00; online 2022-12-24]
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Golparian D, Vestberg N, Södersten W, ..., Bhattarai KH, Unemo M
Euro Surveill. 28 (10) - [2023-03-00; online 2023-03-10]
Clinical Genomics Örebro [Collaborative]
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Isobaric labeling-based quantitative proteomics of FACS-purified immune cells and epithelial cells from the intestine of Crohn's disease patients reveals proteome changes of potential importance in disease pathogenesis.
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Proteomics 23 (5) e2200366 [2023-03-00; online 2022-12-25]
Glycoproteomics and MS Proteomics [Collaborative]
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Increasing Complexity of the N-Glycome During Caenorhabditis Development.
Wilson IBH, Yan S, Jin C, ..., Schnabel R, Paschinger K
Mol. Cell Proteomics 22 (3) 100505 [2023-03-00; online 2023-01-28]
Glycoproteomics and MS Proteomics [Collaborative]
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Fuel 335 (-) 127059 [2023-03-00; online 2023-03-00]
Integrated Microscopy Technologies Umeå [Service]
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Fast three-dimensional image generation for healthy brain aging using diffeomorphic registration.
Fu J, Tzortzakakis A, Barroso J, ..., Moreno R, Alzheimer's Disease Neuroimaging Initiative
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Soil Biology and Biochemistry 178 (-) 108932 [2023-03-00; online 2023-03-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Glycoproteomics and MS Proteomics [Collaborative]
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Rydell A, Nerpin E, Zhou X, ..., Ärnlöv J, Malinovschi A
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Affinity Proteomics Uppsala [Service]
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NCF1-dependent production of ROS protects against lupus by regulating plasmacytoid dendritic cell development and functions.
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Muc2-dependent microbial colonization of the jejunal mucus layer is diet sensitive and confers local resistance to enteric pathogen infection.
Birchenough GMH, Schroeder BO, Sharba S, ..., Bäckhed F, Hansson GC
Cell Rep 42 (2) 112084 [2023-02-28; online 2023-02-06]
Integrated Microscopy Technologies Gothenburg [Service]
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Cryo-EM [Service]
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Chitosan-Modified Polyethyleneimine Nanoparticles for Enhancing the Carboxylation Reaction and Plants' CO2 Uptake.
Routier C, Vallan L, Daguerre Y, ..., Pavlopoulou E, Stavrinidou E
ACS Nano 17 (4) 3430-3441 [2023-02-28; online 2023-02-16]
Swedish Metabolomics Centre (SMC) [Collaborative]
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Nat Commun 14 (1) 1120 [2023-02-27; online 2023-02-27]
Cryo-EM [Collaborative]
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Single-Cell Transcriptomics To Define Plasmodium falciparum Stage Transition in the Mosquito Midgut.
Mohammed M, Dziedziech A, Sekar V, ..., Vega-Rodriguez J, Ankarklev J
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Bioinformatics Support for Computational Resources [Service] Microbial Single Cell Genomics [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Targeted plasma proteomics reveals signatures discriminating COVID-19 from sepsis with pneumonia.
Palma Medina LM, Babačić H, Dzidic M, ..., Strålin K, Norrby-Teglund A
Respir. Res. 24 (1) 62 [2023-02-24; online 2023-02-24]
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Reproducing extracellular matrix adverse remodelling of non-ST myocardial infarction in a large animal model.
Contessotto P, Spelat R, Ferro F, ..., Pandit A, Da Costa M
Nat Commun 14 (1) 995 [2023-02-22; online 2023-02-22]
Glycoproteomics and MS Proteomics [Collaborative]
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Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.
Jun S, Toosi H, Mold J, ..., Roth A, Lagergren J
Nat Commun 14 (1) 982 [2023-02-22; online 2023-02-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Metagenomic and single-cell RNA-Seq survey of the Helicobacter pylori-infected stomach in asymptomatic individuals.
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JCI Insight 8 (4) - [2023-02-22; online 2023-02-22]
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Accelerated epigenetic aging in women with emotionally unstable personality disorder and a history of suicide attempts.
Boström ADE, Andersson P, Jamshidi E, ..., Åsberg M, Jokinen J
Transl Psychiatry 13 (1) 66 [2023-02-22; online 2023-02-22]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sjödin KS, Sjödin A, Ruszczyński M, ..., Szajewska H, West CE
BMC Biol. 21 (1) 38 [2023-02-20; online 2023-02-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]
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Endosperm cellularization failure induces a dehydration-stress response leading to embryo arrest.
Xu W, Sato H, Bente H, Santos-González J, Köhler C
Plant Cell 35 (2) 874-888 [2023-02-20; online 2022-11-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]
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Multi-organ single-cell analysis reveals an on/off switch system with potential for personalized treatment of immunological diseases.
Lilja S, Li X, Smelik M, ..., Wang H, Benson M
Cell Reports Medicine - (-) 100956 [2023-02-17; online 2023-02-17]
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Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation.
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Boron-Mediated Regioselective Aromatic C-H Functionalization via an Aryl BF2 Complex.
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Genomic architecture of migration timing in a long-distance migratory songbird.
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Sci Rep 13 (1) 2437 [2023-02-10; online 2023-02-10]
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Anim Microbiome 5 (1) 9 [2023-02-10; online 2023-02-10]
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Simultaneous membrane and RNA binding by tick-borne encephalitis virus capsid protein.
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Migratory behaviour is positively associated with genetic diversity in butterflies.
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Inactivation of RB1, CDKN2A, and TP53 have distinct effects on genomic stability at side-by-side comparison in karyotypically normal cells.
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Genes Chromosomes Cancer 62 (2) 93-100 [2023-02-00; online 2022-09-30]
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Identification of metabotypes in complex biological data using tensor decomposition
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Li T, Vazakidou P, Leonards PEG, ..., van Duursen M, Damdimopoulou P
Toxicology 485 (-) 153425 [2023-02-00; online 2023-01-05]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Hypercomplex Low Rank Reconstruction for NMR Spectroscopy
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Signal Processing 203 (-) 108809 [2023-02-00; online 2023-02-00]
Swedish NMR Centre (SNC) [Collaborative]
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High-content analysis shows synergistic effects of low perfluorooctanoic acid (PFOS) and perfluorooctane sulfonic acid (PFOA) mixture concentrations on human breast epithelial cell carcinogenesis.
Pierozan P, Kosnik M, Karlsson O
Environ Int 172 (-) 107746 [2023-02-00; online 2023-01-12]
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Swedish NMR Centre (SNC) [Service]
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Distinct T cell subsets in adipose tissue are associated with obesity.
Haugstøyl ME, Cornillet M, Strand K, ..., Fernø J, Björkström NK
Eur. J. Immunol. 53 (2) e2249990 [2023-02-00; online 2022-12-13]
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Diseased thyroid tissue classification in OCT images using deep learning: Towards surgical decision support.
Tampu IE, Eklund A, Johansson K, Gimm O, Haj-Hosseini N
J. Biophotonics 16 (2) e202200227 [2023-02-00; online 2022-11-11]
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Lage S, Gentili FG
Chemosphere 313 (-) 137344 [2023-02-00; online 2022-11-26]
Swedish Metabolomics Centre (SMC) [Service]
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Carbon substrate selects for different lineages of N2O reducing communities in soils under anoxic conditions
Maheshwari A, Jones CM, Tiemann M, Hallin S
Soil Biology and Biochemistry 177 (-) 108909 [2023-02-00; online 2023-02-00]
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An annotated high-content fluorescence microscopy dataset with Hoechst 33342-stained nuclei and manually labelled outlines.
Arvidsson M, Rashed SK, Aits S
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An allozyme polymorphism is associated with a large chromosomal inversion in the marine snail Littorina fabalis.
Le Moan A, Panova M, De Jode A, ..., Butlin R, Johannesson K
Evol Appl 16 (2) 279-292 [2023-02-00; online 2022-06-26]
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A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung.
Sountoulidis A, Marco Salas S, Braun E, ..., Nilsson M, Samakovlis C
Nat Cell Biol 25 (2) 351-365 [2023-02-00; online 2023-01-16]
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7-month duration of SARS-CoV-2 mucosal immunoglobulin-A responses and protection.
Marking U, Bladh O, Havervall S, ..., Klingström J, Thålin C
Lancet Infect Dis 23 (2) 150-152 [2023-02-00; online 2023-01-11]
Affinity Proteomics Uppsala [Collaborative]
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6α-hydroxylated bile acids mediate TGR5 signalling to improve glucose metabolism upon dietary fiber supplementation in mice.
Makki K, Brolin H, Petersen N, ..., Marschall HU, Bäckhed F
Gut 72 (2) 314-324 [2023-02-00; online 2022-06-13]
Bioinformatics Support for Computational Resources [Service]
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Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis.
van Creij J, Auxier B, An J, ..., Pan Z, Limpens E
BMC Genomics 24 (1) 53 [2023-01-28; online 2023-01-28]
Microbial Single Cell Genomics [Service]
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The motor system is exceptionally vulnerable to absence of the ubiquitously expressed superoxide dismutase-1.
Park JH, Nordström U, Tsiakas K, ..., Marklund SL, Andersen PM
Brain Commun 5 (1) fcad017 [2023-01-27; online 2023-01-27]
Swedish Metabolomics Centre (SMC) [Service]
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Inversions maintain differences between migratory phenotypes of a songbird.
Lundberg M, Mackintosh A, Petri A, Bensch S
Nat Commun 14 (1) 452 [2023-01-27; online 2023-01-27]
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Cotman AE, Durcik M, Benedetto Tiz D, ..., Sterk GJ, Kikelj D
J. Med. Chem. 66 (2) 1380-1425 [2023-01-26; online 2023-01-12]
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Affinity Proteomics Uppsala [Service]
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Ginsenoside Rg3 Reduces the Toxicity of Graphene Oxide Used for pH-Responsive Delivery of Doxorubicin to Liver and Breast Cancer Cells.
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Pharmaceutics 15 (2) - [2023-01-24; online 2023-01-24]
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Commun Chem 6 (1) 18 [2023-01-23; online 2023-01-23]
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Ezzamouri B, Rosario D, Bidkhori G, ..., Uhlen M, Shoaie S
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Biocontrol Effect of Clonostachys rosea on Fusarium graminearum Infection and Mycotoxin Detoxification in Oat (Avena sativa).
Khairullina A, Micic N, Jørgensen HJL, ..., Collinge DB, Jensen B
Plants (Basel) 12 (3) - [2023-01-21; online 2023-01-21]
Swedish Metabolomics Centre (SMC) [Service]
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High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.).
Höök L, Näsvall K, Vila R, Wiklund C, Backström N
Chromosome Res. 31 (1) 2 [2023-01-20; online 2023-01-20]
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High cardiomyocyte diversity in human early prenatal heart development.
Sylvén C, Wärdell E, Månsson-Broberg A, ..., Björklund Å, Giacomello S
iScience 26 (1) 105857 [2023-01-20; online 2022-12-21]
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PubMed DOI Crossref
Cerebellar granule neurons induce Cyclin D1 before the onset of motor symptoms in Huntington's disease mice.
Bauer S, Chen CY, Jonson M, ..., Magadi SS, Jackson WS
Acta Neuropathol Commun 11 (1) 17 [2023-01-20; online 2023-01-20]
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Shemirani MI, Tilevik D, Tilevik A, ..., Enroth H, Pernestig AK
BMC Infect. Dis. 23 (1) 39 [2023-01-20; online 2023-01-20]
Clinical Genomics Stockholm [Service]
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Single-cell analysis of myeloid cells in HPV+ tonsillar cancer.
Jimenez DG, Altunbulakli C, Swoboda S, ..., Greiff L, Lindstedt M
Front Immunol 13 (-) 1087843 [2023-01-19; online 2023-01-19]
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MOXD1 is a gate-keeper of organ homeostasis and functions as a tumor-suppressor in neuroblastoma
Fredlund E, Andersson S, Hilgert E, ..., van Nes J, Mohlin S
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Clinical Genomics Lund [Service]
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Highly differentiated loci resolve phylogenetic relationships in the Bean Goose complex.
Ottenburghs J, Honka J, Heikkinen ME, ..., Müskens GJDM, Ellegren H
BMC Ecol Evol 23 (1) 2 [2023-01-19; online 2023-01-19]
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Identification and evaluation of small-molecule inhibitors against the dNTPase SAMHD1viaa comprehensive screening funnel
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A chemical screen underscores the essential role of STAT1-dependent IFNγ signaling to regulate HLA-I expression in cancer cells.
Barz M, Porebski B, Panshikar P, ..., Hühn D, Fernandez-Capetillo O
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Chemical Biology Consortium Sweden (CBCS) [Service]
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Zero-Degree Celsius Capillary Electrophoresis Electrospray Ionization for Hydrogen Exchange Mass Spectrometry.
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Anal. Chem. 95 (2) 1149-1158 [2023-01-17; online 2022-12-22]
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Novel and unusual genes for nitrogen and metal cycling in Planctomycetota- and KSB1-affiliated metagenome-assembled genomes reconstructed from a marine subsea tunnel.
Suarez C, Hackl T, Wilen BM, ..., Jetten MSM, Dalcin Martins P
FEMS Microbiol. Lett. 370 (-) - [2023-01-17; online 2023-06-09]
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Fluorogenic properties of 4-dimethylaminocinnamaldehyde (DMACA) enable high resolution imaging of cell-wall-bound proanthocyanidins in plant root tissues.
Chowdhury J, Ferdous J, Lihavainen J, Albrectsen BR, Lundberg-Felten J
Front Plant Sci 13 (-) 1060804 [2023-01-16; online 2023-01-16]
Swedish Metabolomics Centre (SMC) [Service]
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Microbial communities mediating net methylmercury formation along a trophic gradient in a peatland chronosequence.
Wang B, Hu H, Bishop K, ..., Bertilsson S, Bravo AG
J Hazard Mater 442 (-) 130057 [2023-01-15; online 2022-09-23]
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Methylmercury formation in biofilms of Geobacter sulfurreducens.
Yunda E, Gutensohn M, Ramstedt M, Björn E
Front Microbiol 14 (-) 1079000 [2023-01-13; online 2023-01-13]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia.
Arendt ML, Sakthikumar S, Melin M, ..., Rönnberg H, Lindblad-Toh K
Sci Rep 13 (1) 632 [2023-01-12; online 2023-01-12]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A hypomorphic variant in the translocase of the outer mitochondrial membrane complex subunit TOMM7 causes short stature and developmental delay.
Young C, Batkovskyte D, Kitamura M, ..., Grigelioniene G, Kobayashi T
HGG Adv 4 (1) 100148 [2023-01-12; online 2022-10-04]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Single-cell transcriptomics reveals correct developmental dynamics and high-quality midbrain cell types by improved hESC differentiation.
Nishimura K, Yang S, Lee KW, ..., Linnarsson S, Arenas E
Stem Cell Reports 18 (1) 337-353 [2023-01-10; online 2022-11-17]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Persistence of salivary antibody responses after COVID-19 vaccination is associated with oral microbiome variation in both healthy and people living with HIV.
Ghorbani M, Al-Manei K, Naud S, ..., Aleman S, Sällberg Chen M
Front Immunol 13 (-) 1079995 [2023-01-10; online 2023-01-10]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Longitudinal single-cell analysis of SARS-CoV-2-reactive B cells uncovers persistence of early-formed, antigen-specific clones.
Scharf L, Axelsson H, Emmanouilidi A, ..., Bemark M, Angeletti D
JCI Insight 8 (1) - [2023-01-10; online 2023-01-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies.
Pushparaj P, Nicoletto A, Sheward DJ, ..., Corcoran M, Karlsson Hedestam GB
Immunity 56 (1) 193-206.e7 [2023-01-10; online 2022-12-12]
Structural Proteomics [Collaborative]
PubMed DOI Crossref
Case Report: Whole genome sequencing identifies CCDC88C as a novel JAK2 fusion partner in pediatric T-cell acute lymphoblastic leukemia.
Krstic A, Rezayee F, Saft L, ..., Svenberg P, Barbany G
Front Pediatr 10 (-) 1082986 [2023-01-10; online 2023-01-10]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Antibiotic perseverance increases the risk of resistance development.
Brandis G, Larsson J, Elf J
Proc. Natl. Acad. Sci. U.S.A. 120 (2) e2216216120 [2023-01-10; online 2023-01-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean.
Koptekin D, Yüncü E, Rodríguez-Varela R, ..., Götherström A, Somel M
Curr. Biol. 33 (1) 41-57.e15 [2023-01-09; online 2022-12-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of novel autoantigens as potential biomarkers in juvenile idiopathic arthritis associated uveitis.
Arve-Butler S, Mossberg A, Kahn F, ..., Månsson B, Kahn R
Front Pediatr 10 (-) 1091308 [2023-01-09; online 2023-01-09]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice.
Hases L, Stepanauskaite L, Birgersson M, ..., Engstrand L, Williams C
Commun Biol 6 (1) 20 [2023-01-09; online 2023-01-09]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
The effect of side chain variations on quinazoline-pyrimidine G-quadruplex DNA ligands.
Bhuma N, Chand K, Andréasson M, ..., Öhlund D, Chorell E
Eur J Med Chem 248 (-) 115103 [2023-01-08; online 2023-01-08]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Early response evaluation by single cell signaling profiling in acute myeloid leukemia.
Tislevoll BS, Hellesøy M, Fagerholt OHE, ..., Blaser N, Gjertsen BT
Nat Commun 14 (1) 115 [2023-01-07; online 2023-01-07]
Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
Deep Learning on Ultrasound Images Visualizes the Femoral Nerve with Good Precision.
Berggreen J, Johansson A, Jahr J, Möller S, Jansson T
Healthcare (Basel) 11 (2) - [2023-01-07; online 2023-01-07]
AIDA Data Hub [Service]
PubMed DOI Crossref
GotEnzymes: an extensive database of enzyme parameter predictions.
Li F, Chen Y, Anton M, Nielsen J
Nucleic Acids Res. 51 (D1) D583-D586 [2023-01-06; online 2022-09-29]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
PubMed DOI Crossref
The genetic history of Scandinavia from the Roman Iron Age to the present.
Rodríguez-Varela R, Moore KHS, Ebenesersdóttir SS, ..., Helgason A, Götherström A
Cell 186 (1) 32-46.e19 [2023-01-05; online 2023-01-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Novel cancer gene discovery using a forward genetic screen in RCAS-PDGFB-driven gliomas.
Weishaupt H, Čančer M, Rosén G, ..., Ameur A, Swartling FJ
Neuro-oncology 25 (1) 97-107 [2023-01-05; online 2022-06-24]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
ASV portal: an interface to DNA-based biodiversity data in the Living Atlas.
Prager M, Lundin D, Ronquist F, Andersson AF
BMC Bioinformatics 24 (1) 6 [2023-01-05; online 2023-01-05]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Methylation in MAD1L1 is associated with the severity of suicide attempt and phenotypes of depression.
Sokolov AV, Manu DM, Nordberg DOT, ..., Jokinen J, Schiöth HB
Clin Epigenetics 15 (1) 1 [2023-01-04; online 2023-01-04]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain.
Virtanen AT, Haikarainen T, Sampathkumar P, ..., Hubbard SR, Silvennoinen O
Pharmaceuticals (Basel) 16 (1) - [2023-01-04; online 2023-01-04]
Drug Discovery and Development (DDD) [Service]
PubMed DOI Crossref
Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles.
Immonen E, Sayadi A, Stojković B, ..., Wiberg RAW, Arnqvist G
Genome Biol Evol 15 (1) - [2023-01-04; online 2022-12-22]
Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats.
Alaei Kakhki N, Schweizer M, Lutgen D, ..., Schielzeth H, Burri R
Mol. Biol. Evol. 40 (1) - [2023-01-04; online 2022-12-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Optimization of N-Piperidinyl-Benzimidazolone Derivatives as Potent and Selective Inhibitors of 8-Oxo-Guanine DNA Glycosylase 1.
Wallner O, Cázares-Körner A, Scaletti ER, ..., Helleday T, Michel M
ChemMedChem 18 (1) e202200310 [2023-01-03; online 2022-10-13]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Extracellular Galectin 4 Drives Immune Evasion and Promotes T-cell Apoptosis in Pancreatic Cancer.
Lidström T, Cumming J, Gaur R, ..., Patthey C, Öhlund D
Cancer Immunol Res 11 (1) 72-92 [2023-01-03; online 2022-12-09]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics Umeå [Service]
PubMed DOI Crossref
Breast cancer patient-derived whole-tumor cell culture model for efficient drug profiling and treatment response prediction.
Chen X, Sifakis EG, Robertson S, ..., Ma R, Hartman J
Proc. Natl. Acad. Sci. U.S.A. 120 (1) e2209856120 [2023-01-03; online 2022-12-27]
Bioinformatics Support for Computational Resources [Service] Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models.
Allesøe RL, Lundgaard AT, Hernández Medina R, ..., Brunak S, IMI DIRECT Consortium
Nat. Biotechnol. - (-) - [2023-01-02; online 2023-01-02]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Cytokinin signaling regulates two-stage inflorescence arrest in Arabidopsis.
Walker CH, Ware A, Šimura J, ..., Wilson Z, Bennett T
Plant Physiol. 191 (1) 479-495 [2023-01-02; online 2022-11-05]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
The path to immortalization of cells starts by managing stress through gene duplications.
Lewerentz J, Johansson AM, Stenberg P
Exp. Cell Res. 422 (1) 113431 [2023-01-01; online 2022-11-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The injury-induced transcription factor SOX9 alters the expression of LBR, HMGA2, and HIPK3 in the human kidney.
Kha M, Krawczyk K, Choong OK, ..., Swärd K, Johansson ME
Am. J. Physiol. Renal Physiol. 324 (1) F75-F90 [2023-01-01; online 2022-12-01]
Clinical Genomics Gothenburg [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Nuclear and mitochondrial DNA alterations in pheochromocytomas and paragangliomas, and their potential treatment.
Tabebi M, Söderkvist P, Gimm O
Endocr. Relat. Cancer 30 (1) - [2023-01-01; online 2022-12-08]
Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Associations of PFAS-related plasma metabolites with cholesterol and triglyceride concentrations.
Schillemans T, Bergdahl IA, Hanhineva K, ..., Åkesson A, Brunius C
Environ. Res. 216 (Pt 2) 114570 [2023-01-01; online 2022-10-13]
Bioinformatics Support for Computational Resources [Service] Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Widespread CNS pathology in amyotrophic lateral sclerosis homozygous for the D90A SOD1 mutation
Forsberg KM, Graffmo KS, Stenvall E, ..., Brännström T, Andersen PM
Acta Neuropathol 145 (1) 13-28 [2023-01-00; online 2022-11-16]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Three Adult Cases of STAT1 Gain-of-Function with Chronic Mucocutaneous Candidiasis Treated with JAK Inhibitors.
Borgström EW, Edvinsson M, Pérez LP, ..., Brodin P, Bergman P
J Clin Immunol 43 (1) 136-150 [2023-01-00; online 2022-09-02]
Bioinformatics Support for Computational Resources [Service] Cellular Immunomonitoring [Collaborative] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia.
Wen J, Trost B, Engchuan W, ..., Yuen RKC, Szatkiewicz JP
Mol. Psychiatry 28 (1) 475-482 [2023-01-00; online 2022-11-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Palmoplantar keratoderma and digital clubbing in 2 sisters with hypertrophic osteoarthropathy.
Eriksson D, Gyll D, Virtanen M, ..., Klar J, Stattin EL
JAAD Case Rep 31 (-) 133-136 [2023-01-00; online 2022-12-01]
Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
NMR spectrum reconstruction as a pattern recognition problem.
Jahangiri A, Han X, Lesovoy D, ..., Achour A, Orekhov V
J Magn Reson 346 (-) 107342 [2023-01-00; online 2022-11-24]
Swedish NMR Centre (SNC) [Technology development]
PubMed DOI Crossref
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics.
Gueto-Tettay C, Tang D, Happonen L, ..., Malmström J, Malmström L
PLoS Comput. Biol. 19 (1) e1010457 [2023-01-00; online 2023-01-20]
Structural Proteomics [Technology development]
PubMed DOI Crossref
Graphene oxide elicits microbiome-dependent type 2 immune responses via the aryl hydrocarbon receptor.
Peng G, Sinkko HM, Alenius H, ..., Bräutigam L, Fadeel B
Nat Nanotechnol 18 (1) 42-48 [2023-01-00; online 2022-12-12]
Bioinformatics Support for Computational Resources [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genotype-first approach to identify associations between CDH1 germline variants and cancer phenotypes: a multicentre study by the European Reference Network on Genetic Tumour Risk Syndromes.
Garcia-Pelaez J, Barbosa-Matos R, Lobo S, ..., Hoogerbrugge N, Oliveira C
Lancet Oncol 24 (1) 91-106 [2023-01-00; online 2022-11-24]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Gene gain facilitated endosymbiotic evolution of Chlamydiae.
Dharamshi JE, Köstlbacher S, Schön ME, ..., Ettema TJG, Horn M
Nat Microbiol 8 (1) 40-54 [2023-01-00; online 2023-01-05]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Enantioselective CE-MS analysis of ketamine metabolites in urine.
Sandbaumhüter FA, Aerts JT, Theurillat R, ..., Thormann W, Jansson ET
Electrophoresis 44 (1-2) 125-134 [2023-01-00; online 2022-12-09]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Cerebral small vessel disease: Recent advances and future directions.
Markus HS, de Leeuw FE
Int J Stroke 18 (1) 4-14 [2023-01-00; online 2022-12-29]
Clinical Genomics Lund [Service]
PubMed DOI Crossref
Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs.
Lingaas F, Tengvall K, Jansen JH, ..., Lindblad-Toh K, Wang C
PLoS Genet. 19 (1) e1010599 [2023-01-00; online 2023-01-24]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Automatic Time-Resolved Cardiovascular Segmentation of 4D Flow MRI Using Deep Learning.
Bustamante M, Viola F, Engvall J, Carlhäll CJ, Ebbers T
J Magn Reson Imaging 57 (1) 191-203 [2023-01-00; online 2022-05-04]
AIDA Data Hub [Service]
DOI Crossref
Aerosol-based deposition of broadband antireflective silica coating with closed mesoporous structure
Zäll E, Järn M, Karlsson S, ..., Sundin M, Wågberg T
Solar Energy Materials and Solar Cells 250 (-) 112078 [2023-01-00; online 2023-01-00]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
A comprehensive characterization of patients diagnosed with post-COVID-19 condition in Sweden 16 months after the introduction of the International Classification of Diseases Tenth Revision diagnosis code (U09.9): a population-based cohort study.
Bygdell M, Leach S, Lundberg L, ..., Gisslén M, Nyberg F
Int J Infect Dis 126 (-) 104-113 [2023-01-00; online 2022-11-21]
Clinical Genomics Gothenburg [Collaborative]
DOI Crossref
Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3
Behanova A, Avenel C, Andersson A, ..., Östman A, Wählby C
Biol. Imaging 3 (-) - [2023-00-00; online 2023-02-20]
BioImage Informatics [Technology development]
DOI Crossref
Systematics of the avian family Alaudidae using multilocus and genomic data
Alström P, Mohammadi Z, Enbody ED, ..., Donald PF, Stervander M
Avian Research 14 (-) 100095 [2023-00-00; online 2023-00-00]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Sequential extraction of hemicelluloses by subcritical water improves saccharification of hybrid aspen wood grown in greenhouse and field conditions
Sivan P, Heinonen E, Latha Gandla M, ..., Mellerowicz EJ, Vilaplana F
Green Chem. 25 (14) 5634-5646 [2023-00-00; online 2023-00-00]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
On the understanding of bio-oil formation from the hydrothermal liquefaction of organosolv lignin isolated from softwood and hardwood sawdust
Paulsen Thoresen P, Fahrni J, Lange H, ..., Christakopoulos P, Matsakas L
Sustainable Energy Fuels 7 (22) 5361-5373 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Metabolomics-based analysis in Daphnia magna after exposure to low environmental concentrations of polystyrene nanoparticles
Kelpsiene E, Cedervall T, Malmendal A
Environ. Sci.: Nano 10 (7) 1858-1866 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Fluorescent carbon dots from birch leaves for sustainable electroluminescent devices
Tang S, Liu Y, Opoku H, ..., Edman L, Wang J
Green Chem. 25 (23) 9884-9895 [2023-00-00; online 2023-00-00]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Exploring the impact of select anchor groups for norbornadiene/quadricyclane single-molecule switches
Ghasemi S, Ornago L, Liasi Z, ..., Lara-Avila S, Moth-Poulsen K
J. Mater. Chem. C 11 (44) 15412-15418 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Drug repurposing screens identify compounds that inhibit α-synuclein oligomers' membrane disruption and block antibody interactions
Somavarapu AK, Kleijwegt G, Nagaraj M, ..., Nielsen J, Otzen DE
Chem. Sci. 14 (11) 3030-3047 [2023-00-00; online 2023-00-00]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Building a precision medicine infrastructure at a national level: The Swedish experience
Edsjö A, Lindstrand A, Gisselsson D, ..., Fioretos T, Rosenquist R
Camb. prisms Precis. med. 1 (-) - [2023-00-00; online 2023-02-27]
Clinical Genomics Gothenburg [Collaborative]
DOI Crossref
Branched polyesters from radical ring-opening polymerization of cyclic ketene acetals: synthesis, chemical hydrolysis and biodegradation
Mousa M, Jonsson M, Wilson O, ..., Larsson Kron A, Malmström E
Polym. Chem. 14 (47) 5154-5165 [2023-00-00; online 2023-00-00]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Affinity-Purification Combined with Crosslinking Mass Spectrometry for Identification and Structural Modeling of Host–Pathogen Protein–Protein Complexes
Happonen LJ
Methods Mol. Biol. 2674 (-) 181-200 [2023-00-00; online 2023-06-01]
Structural Proteomics [Technology development]
DOI Crossref
A novel biorefinery concept based on marginally used halophyte biomass
Monção M, Thoresen PP, Wretborn T, ..., Christakopoulos P, Matsakas L
Sustainable Energy Fuels 7 (16) 3902-3918 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
A crowd-sourced genomic project to assess hybrid content in a rare avian vagrant (Azure Tit Cyanistes cyanus (Pallas, 1770))
Irestedt M, Thörn F, Ericson PGP, ..., Johansson F, Nylander JAA
Avian Research 14 (-) 100130 [2023-00-00; online 2023-00-00]
Bioinformatics Support for Computational Resources [Service]
SciLifeLab Data Centre
Publications 9.5.1