Publications 2023

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887 publications

PubMed DOI Crossref
Proteomic profiles associated with postsurgical progression in non-functioning pituitary adenomas.
Hallén T, Johannsson G, Thorsell A, ..., Bergquist J, Skoglund T
J. Clin. Endocrinol. Metab. - (-) - [2023-12-29; online 2023-12-29]
Glycoproteomics and MS Proteomics [Collaborative]
DOI Crossref
Simultaneous detection of membrane contact dynamics and associated Ca2+signals by reversible chemogenetic reporters
Casas PG, Rossini M, Påvénius L, ..., Pizzo P, Filadi R
- - (-) - [2023-12-28; online 2023-12-28]
Integrated Microscopy Technologies Stockholm [Collaborative]
DOI Crossref
Biodistribution of DNA-origami nanostructures in live zebrafish embryos with single-cell resolution
Kolonelou C, Bräutigam L, Edwards S, ..., Andersson O, Teixeira AI
- - (-) - [2023-12-23; online 2023-12-23]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Impact of the gut microbiome on immunological responses to COVID-19 vaccination in healthy controls and people living with HIV.
Ray S, Narayanan A, Vesterbacka J, ..., Sönnerborg A, Nowak P
NPJ Biofilms Microbiomes 9 (1) 104 [2023-12-20; online 2023-12-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of Quantitative Trait Nucleotides and Development of Diagnostic Markers for Nine Fatty Acids in the Peanut.
Wang J, Chen H, Li Y, ..., Qu C, Shan S
Plants (Basel) 13 (1) - [2023-12-20; online 2023-12-20]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Effects of environmental translocation and host characteristics on skin microbiomes of sun-basking fish.
Berggren H, Nordahl O, Yıldırım Y, ..., Tibblin P, Forsman A
Proc. Biol. Sci. 290 (2013) 20231608 [2023-12-20; online 2023-12-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Rapid Metabolic Profiling of 1 μL Crude Cerebrospinal Fluid by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging Can Differentiate De Novo Parkinson's Disease.
Vallianatou T, Nilsson A, Bjärterot P, ..., Svenningsson P, Andrén PE
Anal. Chem. 95 (50) 18352-18360 [2023-12-19; online 2023-12-07]
Spatial Mass Spectrometry [Technology development]
DOI Crossref
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells
Brismar H, Senftleben M, Bajor A, Hirata E, Abrahamsson S
- - (-) - [2023-12-19; online 2023-12-19]
Integrated Microscopy Technologies Stockholm [Technology development]
PubMed DOI Crossref
Blue-shift photoconversion of near-infrared fluorescent proteins for labeling and tracking in living cells and organisms.
Pennacchietti F, Alvelid J, Morales RA, ..., Verkhusha VV, Testa I
Nat Commun 14 (1) 8402 [2023-12-19; online 2023-12-19]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification.
Hafstað V, Häkkinen J, Larsson M, ..., Vallon-Christersson J, Persson H
BMC Genomics 24 (1) 783 [2023-12-18; online 2023-12-18]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Giardia intestinalisdeoxyadenosine kinase has a unique tetrameric structure that enables high substrate affinity and makes the parasite sensitive to deoxyadenosine analogues
Ranjbarian F, Rafie K, Shankar K, ..., Carlson LA, Hofer A
- - (-) - [2023-12-18; online 2023-12-18]
Cryo-EM [Service]
PubMed DOI Crossref
Dissecting the genetic landscape of GPCR signaling through phenotypic profiling in C. elegans.
Pu L, Wang J, Lu Q, ..., Henriksson J, Chen C
Nat Commun 14 (1) 8410 [2023-12-18; online 2023-12-18]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Molecular dynamics study on micelle-small molecule interactions: developing a strategy for an extensive comparison.
Kabedev A, Bergström CAS, Larsson P
J Comput Aided Mol Des 38 (1) 5 [2023-12-16; online 2023-12-16]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Using guaiacol as a capping agent in the hydrothermal depolymerisation of kraft lignin
Ahlbom A, Maschietti M, Nielsen R, Hasani M, Theliander H
- 38 (4) 619-631 [2023-12-15; online 2023-09-26]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Short- and long-term effects of radiation exposure at low dose and low dose rate in normal human VH10 fibroblasts.
Akuwudike P, López-Riego M, Marczyk M, ..., Wojcik A, Lundholm L
Front Public Health 11 (-) 1297942 [2023-12-15; online 2023-12-15]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Influenza-A mediated pre-existing immunity levels to SARS-CoV-2 could predict early COVID-19 outbreak dynamics.
Almazán NM, Rahbar A, Carlsson M, ..., Sörensen B, Söderberg-Nauclér C
iScience 26 (12) 108441 [2023-12-15; online 2023-11-14]
Autoimmunity and Serology Profiling [Service] Drug Discovery and Development (DDD) [Service]
PubMed DOI Crossref
Effect of anode material and dispersal limitation on the performance and biofilm community in microbial electrolysis cells.
Abadikhah M, Liu M, Persson F, ..., Sun J, Modin O
Biofilm 6 (-) 100161 [2023-12-15; online 2023-10-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Balanced chromosomal rearrangements implicate YIPF5 and SPATC1L in non-obstructive oligoasthenozoospermia and oligozoospermia and of a derivative chromosome 22 in recurrent miscarriage.
David D, Fino J, Oliveira R, Dória S, Morton CC
Gene 887 (-) 147737 [2023-12-15; online 2023-08-23]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Csu pili dependent biofilm formation and virulence of Acinetobacter baumannii.
Ahmad I, Nadeem A, Mushtaq F, ..., Wai SN, Uhlin BE
NPJ Biofilms Microbiomes 9 (1) 101 [2023-12-14; online 2023-12-14]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements.
Arnqvist G, Westerberg I, Galbraith J, ..., Ewels P, Suh A
G3 (Bethesda) - (-) - [2023-12-13; online 2023-12-13]
Bioinformatics Support for Computational Resources [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phyloecology of nitrate ammonifiers and their importance relative to denitrifiers in global terrestrial biomes.
Saghaï A, Pold G, Jones CM, Hallin S
Nat Commun 14 (1) 8249 [2023-12-12; online 2023-12-12]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Genes with epigenetic alterations in human pancreatic islets impact mitochondrial function, insulin secretion, and type 2 diabetes
Rönn T, Ofori JK, Perfilyev A, ..., Bacos K, Ling C
Nat Commun 14 (1) 8040 [2023-12-12; online 2023-12-12]
Swedish Metabolomics Centre (SMC) [Collaborative]
PubMed DOI Crossref
CENP-A and CENP-B collaborate to create an open centromeric chromatin state.
Nagpal H, Ali-Ahmad A, Hirano Y, ..., Sekulić N, Fierz B
Nat Commun 14 (1) 8227 [2023-12-12; online 2023-12-12]
Cryo-EM [Service]
PubMed DOI Crossref
The formation of the Indo-Pacific montane avifauna.
Reeve AH, Kennedy JD, Pujolar JM, ..., Nylander JAA, Jønsson KA
Nat Commun 14 (1) 8215 [2023-12-11; online 2023-12-11]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Haplotype-resolved genome of heterozygous African cassava cultivar TMEB117 (Manihot esculenta).
Landi M, Shah T, Falquet L, ..., Bongcam-Rudloff E, Gisel A
Sci Data 10 (1) 887 [2023-12-09; online 2023-12-09]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The functional and molecular impact of triamcinolone acetonide on primary human bone marrow mesenchymal stem cells.
Kumlin M, Ungerstedt J, Cai H, ..., Felländer-Tsai L, Qian H
Sci Rep 13 (1) 21787 [2023-12-08; online 2023-12-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics.
Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J
Science 382 (6675) eadf8486 [2023-12-08; online 2023-12-08]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Short read NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Multimodal classification of molecular subtypes in pediatric acute lymphoblastic leukemia.
Krali O, Marincevic-Zuniga Y, Arvidsson G, ..., Syvänen AC, Nordlund J
NPJ Precis Oncol 7 (1) 131 [2023-12-08; online 2023-12-08]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse.
Kurt Z, Cheng J, Barrere-Cain R, ..., Blencowe M, Yang X
Elife 12 (-) - [2023-12-07; online 2023-12-07]
NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network.
Xu X, Bhalla N, Ståhl P, Jaldén J
BMC Bioinformatics 24 (1) 461 [2023-12-07; online 2023-12-07]
NGI Long read NGI Short read [Service] NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Gut bacteria at 6 months of age are associated with immune cell status in 1‐year‐old children
Nilsen M, Nygaard UC, Brodin P, ..., Vettukattil R, Rudi K
Scand J Immunol - (-) - [2023-12-07; online 2023-12-07]
Cellular Immunomonitoring [Collaborative]
DOI Crossref
Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12
Martinez A, Tai MD, Ochoa L, ..., Valpuesta J, Cuellar J
- - (-) - [2023-12-06; online 2023-12-06]
Cryo-EM [Service]
PubMed DOI Crossref
Disinfection by-products in drinking water and risk of colorectal cancer: a population-based cohort study.
Helte E, Säve-Söderbergh M, Larsson SC, Martling A, Åkesson A
J. Natl. Cancer Inst. 115 (12) 1597-1604 [2023-12-06; online 2023-08-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Meta-Analyses of Genome-Wide Association Studies for Postpartum Depression.
Guintivano J, Byrne EM, Kiewa J, ..., Meltzer-Brody S, Sullivan P
Am J Psychiatry 180 (12) 884-895 [2023-12-01; online 2023-10-18]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mapping and Functional Dissection of the Rumpless Trait in Piao Chicken Identifies a Causal Loss of Function Mutation in the Novel Gene Rum.
Guo Y, Tian J, Song C, ..., Carlborg Ö, Hu X
Mol. Biol. Evol. 40 (12) - [2023-12-01; online 2023-12-10]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Genome-Wide Association and Two-Sample Mendelian Randomization Analyses of Plasma Ghrelin and Gastrointestinal Cancer Risk.
Larsson SC, Höijer J, Sun J, ..., Burgess S, Michaëlsson K
Cancer Epidemiol Biomarkers Prev 32 (12) 1771-1776 [2023-12-01; online 2023-10-04]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation.
Jensen A, Swift F, de Vries D, ..., Roos C, Guschanski K
Mol. Biol. Evol. 40 (12) - [2023-12-01; online 2023-11-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A beginner's handbook to identify and characterize i-motif DNA.
Sengupta P, Jamroskovic J, Sabouri N
Methods Enzymol 695 (-) 45-70 [2023-12-01; online 2023-12-01]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Three-dimensional reconstruction of interstitial extracellular vesicles in human liver as determined by electron tomography.
Olofsson Bagge R, Berndtsson J, Urzì O, ..., Micaroni M, Crescitelli R
J Extracell Vesicles 12 (12) e12380 [2023-12-00; online 2023-11-27]
Integrated Microscopy Technologies Gothenburg [Collaborative]
PubMed DOI Crossref
The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.
Ozden B, Kryshtafovych A, Karaca E
Proteins 91 (12) 1636-1657 [2023-12-00; online 2023-10-20]
Bioinformatics (NBIS) [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Tertiary structure assessment at CASP15.
Simpkin AJ, Mesdaghi S, Sánchez Rodríguez F, ..., Keegan RM, Rigden DJ
Proteins 91 (12) 1616-1635 [2023-12-00; online 2023-09-25]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Screening for Circulating Inflammatory Proteins Does Not Reveal Plasma Biomarkers of Constant Tinnitus.
Cederroth CR, Hong MG, Freydin MB, ..., Bulla J, Williams FMK
J Assoc Res Otolaryngol 24 (6) 593-606 [2023-12-00; online 2023-12-11]
Affinity Proteomics Stockholm [Service] Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Plasma Protein Profiling of Incident Cardiovascular Diseases: A Multisample Evaluation.
Lind L, Titova O, Zeng R, ..., Assimes T, Michaëlsson K
Circ Genom Precis Med 16 (6) e004233 [2023-12-00; online 2023-11-28]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Patterns of phylogenetic diversification in the Dollarbird (Eurystomus orientalis) and Azure Roller (Eurystomus azureus) complex.
Johansson US, Irestedt M, Ericson PGP
Mol. Phylogenet. Evol. 189 (-) 107909 [2023-12-00; online 2023-08-22]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mitochondrial membrane potential acts as a retrograde signal to regulate cell cycle progression.
Gorospe CM, Carvalho G, Herrera Curbelo A, ..., Niedźwiecka K, Wanrooij PH
Life Sci. Alliance 6 (12) - [2023-12-00; online 2023-09-11]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Lipid- and substrate-induced conformational and dynamic changes in a glycosyltransferase involved in E. coli LPS synthesis revealed by 19F and 31P NMR.
Patrick J, Pettersson P, Mäler L
Biochimica et Biophysica Acta (BBA) - Biomembranes 1865 (8) 184209 [2023-12-00; online 2023-08-07]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
In-depth immune profiling reveals advanced B- and T-cell differentiation to be associated with Th1-driven immune dysregulation in common variable immunodeficiency.
Hultberg J, Blixt E, Göransson R, ..., Ernerudh J, Nyström S
Clin. Immunol. 257 (-) 109816 [2023-12-00; online 2023-10-31]
Affinity Proteomics Uppsala [Service] Cellular Immunomonitoring [Service]
PubMed DOI Crossref
Glycan Complexity and Heterogeneity of Glycoproteins in Somatic Extracts and Secretome of the Infective Stage of the Helminth Fasciola hepatica.
De Marco Verissimo C, Cwiklinski K, Nilsson J, ..., Karlsson NG, Dalton JP
Mol. Cell Proteomics 22 (12) 100684 [2023-12-00; online 2023-11-21]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Hensen N, Bonometti L, Westerberg I, ..., Hiltunen Thorén M, Johannesson H
Mol. Phylogenet. Evol. 189 (-) 107938 [2023-12-00; online 2023-10-10]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Fluorescence-activated multi-organelle mapping of subcellular plant hormone distribution.
Skalický V, Antoniadi I, Pěnčík A, ..., Ljung K, Novák O
Plant J. 116 (6) 1825-1841 [2023-12-00; online 2023-09-08]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development.
Urbancsok J, Donev EN, Sivan P, ..., Street NR, Mellerowicz EJ
New Phytol. 240 (6) 2312-2334 [2023-12-00; online 2023-10-19]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Defective Uterine Spiral Artery Remodeling and Placental Senescence in a Pregnant Rat Model of Polycystic Ovary Syndrome.
Hu M, Zhang Y, Zhang X, ..., Shao LR, Billig H
Am. J. Pathol. 193 (12) 1916-1935 [2023-12-00; online 2023-09-07]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Ataxia Syndrome With Hearing Loss and Nephronophthisis Associated With a Novel Homozygous Variant in XPNPEP3.
Ben-Shabat I, Kvarnung M, Sperker W, ..., Engvall M, Paucar M
Neurol Genet 9 (6) e200100 [2023-12-00; online 2023-11-28]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
An epigenome-wide analysis of sex hormone levels and DNA methylation in male blood samples.
Harbs J, Rinaldi S, Keski-Rahkonen P, ..., Van Guelpen B, Harlid S
Epigenetics 18 (1) 2196759 [2023-12-00; online 2023-03-31]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
An enriched maternal environment and stereotypies of sows differentially affect the neuro-epigenome of brain regions related to emotionality in their piglets.
Tatemoto P, Pértille F, Bernardino T, ..., Guerrero-Bosagna C, Zanella AJ
Epigenetics 18 (1) 2196656 [2023-12-00; online 2023-05-16]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Advanced optical imaging reveals preferred spatial orientation of podocyte processes along the axis of glomerular capillaries.
Unnersjö-Jess D, Ramdedovic A, Butt L, ..., Schermer B, Benzing T
Kidney Int. 104 (6) 1164-1169 [2023-12-00; online 2023-09-27]
Integrated Microscopy Technologies Stockholm [Collaborative]
DOI Crossref
A multi-strategy antimicrobial discovery approach reveals new ways to combatChlamydia
Ölander M, Vázquez DR, Meier K, ..., Schroeder BO, Sixt BS
- - (-) - [2023-11-30; online 2023-11-30]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Using trials of caloric restriction and bariatric surgery to explore the effects of body mass index on the circulating proteome.
Goudswaard LJ, Smith ML, Hughes DA, ..., Timpson NJ, Corbin LJ
Sci Rep 13 (1) 21077 [2023-11-29; online 2023-11-29]
Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ovarian ERβ cistrome and transcriptome reveal chromatin interaction with LRH-1.
Birgersson M, Indukuri R, Lindquist L, ..., Archer A, Williams C
BMC Biol. 21 (1) 277 [2023-11-29; online 2023-11-29]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of constrained sequence elements across 239 primate genomes.
Kuderna LFK, Ulirsch JC, Rashid S, ..., Marques Bonet T, Farh KK
Nature - (-) - [2023-11-29; online 2023-11-29]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Pathogenic DDX41 variants, possible response predictors to low-dose melphalan in hypo- and normocellular MDS and AML.
Nyquist OE, Dalgaard J, Spetalen S, ..., Baliakas P, Dybedal I
Br. J. Haematol. - (-) - [2023-11-28; online 2023-11-28]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Calmodulin regulates protease versus co-chaperone activity of a metacaspase.
Eisele-Bürger AM, Eisele F, Malmgren Hill S, ..., Bozhkov PV, Nyström T
Cell Rep 42 (11) 113372 [2023-11-28; online 2023-11-08]
Glycoproteomics and MS Proteomics [Service]
DOI Crossref
Sociodemographic characteristics and COVID-19 testing rates: spatiotemporal patterns and impact of test accessibility in Sweden
Kennedy B, Varotsis G, Hammar U, ..., Björk J, Fall T
- - (-) - [2023-11-27; online 2023-11-27]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Metabolomic profiles of intact tissues reflect clinically relevant prostate cancer subtypes.
Dudka I, Lundquist K, Wikström P, Bergh A, Gröbner G
J Transl Med 21 (1) 860 [2023-11-27; online 2023-11-27]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Infants' looking preferences for social versus non-social objects reflect genetic variation.
Portugal AM, Viktorsson C, Taylor MJ, ..., Ronald A, Falck-Ytter T
Nat Hum Behav - (-) - [2023-11-27; online 2023-11-27]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
DNA elements tether canonical Polycomb Repressive Complex 1 to human genes.
Barrasa JI, Kahn TG, Lundkvist MJ, Schwartz YB
Nucleic Acids Res. 51 (21) 11613-11633 [2023-11-27; online 2023-10-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
RecView: an interactive R application for locating recombination positions using pedigree data.
Zhang H, Hansson B
BMC Genomics 24 (1) 712 [2023-11-25; online 2023-11-25]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Selection, characterization and in vivo evaluation of novel CD44v6-targeting antibodies for targeted molecular radiotherapy.
Mortensen ACL, Berglund H, Segerström L, ..., Frejd FY, Nestor M
Sci Rep 13 (1) 20648 [2023-11-24; online 2023-11-24]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Evaluation of circulating plasma proteins in breast cancer using Mendelian randomisation.
Mälarstig A, Grassmann F, Dahl L, ..., Czene K, Hedman ÅK
Nat Commun 14 (1) 7680 [2023-11-24; online 2023-11-24]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Combined NMR and molecular dynamics conformational filter identifies unambiguously dynamic ensembles of Dengue protease NS2B/NS3pro.
Agback T, Lesovoy D, Han X, ..., Achour A, Agback P
Commun Biol 6 (1) 1193 [2023-11-24; online 2023-11-24]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
The heat shock protein LarA activates the Lon protease in response to proteotoxic stress.
Omnus DJ, Fink MJ, Kallazhi A, ..., Landreh M, Jonas K
Nat Commun 14 (1) 7636 [2023-11-22; online 2023-11-22]
Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
Covid-19 vaccine effectiveness against post-covid-19 condition among 589 722 individuals in Sweden: population based cohort study.
Lundberg-Morris L, Leach S, Xu Y, ..., Nyberg F, Bygdell M
BMJ 383 (-) e076990 [2023-11-22; online 2023-11-22]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Clinical, genetic and structural delineation of RPL13-related spondyloepimetaphyseal dysplasia suggest extra-ribosomal functions of eL13.
Jacob P, Lindelöf H, Rustad CF, ..., Girisha KM, Grigelioniene G
npj Genom. Med. 8 (1) 39 [2023-11-22; online 2023-11-22]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Changes in cell wall composition due to a pectin biosynthesis enzyme GAUT10 impact root growth.
Dash L, Swaminathan S, Šimura J, ..., Zabotina OA, Kelley DR
Plant Physiol. 193 (4) 2480-2497 [2023-11-22; online 2023-08-22]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
FAIR+E pathogen data for surveillance and research: lessons from COVID-19
Neves A, Cuesta I, Hjerde E, ..., Waheed Z, Blomberg N
Front Public Health 11 (-) - [2023-11-21; online 2023-11-21]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Elucidation of the Binding Orientation in α2,3- and α2,6-Linked Neu5Ac-Gal Epitopes toward a Hydrophilic Molecularly Imprinted Monolith.
Huynh CM, Mavliutova L, Sparrman T, Sellergren B, Irgum K
ACS Omega 8 (46) 44238-44249 [2023-11-21; online 2023-11-06]
Swedish NMR Centre (SNC) [Collaborative]
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Complex norovirus transmission dynamics at hospital wards revealed by deep sequencing.
Widström J, Andersson ME, Westin J, ..., Lindh M, Rydell GE
J. Clin. Microbiol. 61 (11) e0060823 [2023-11-21; online 2023-10-27]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
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Structures of theStaphylococcus aureusribosome inhibited by fusidic acid and fusidic acid cyclopentane
González-López A, Larsson DSD, Koripella RK, ..., Sanyal S, Selmer M
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Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.
Karki S, Javanainen M, Rehan S, ..., Happonen L, Paavilainen V
EMBO Rep. - (-) e57910 [2023-11-20; online 2023-11-20]
Structural Proteomics [Collaborative]
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LC-MS-Based Metabolomics for Dietary Biomarker Discovery in a Cohort of Pregnant and Lactating Women and Their Infants
Stråvik M, Hartvigsson O, Noerman S, ..., Barman M, Sandberg AS
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Chalmers Mass Spectrometry Infrastructure [Service]
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Dysregulations in hemostasis, metabolism, immune response, and angiogenesis in post-acute COVID-19 syndrome with and without postural orthostatic tachycardia syndrome: a multi-omic profiling study.
Mahdi A, Zhao A, Fredengren E, ..., Pernow J, Ståhlberg M
Sci Rep 13 (1) 20230 [2023-11-19; online 2023-11-19]
Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Shotgun metagenomes from productive lakes in an urban region of Sweden.
Rodríguez-Gijón A, Hampel JJ, Dharamshi J, Bertilsson S, Garcia SL
Sci Data 10 (1) 810 [2023-11-17; online 2023-11-17]
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Serum DHEA and Testosterone Levels Associate Inversely With Coronary Artery Calcification in Elderly Men.
Ohlsson C, Nethander M, Norlén A, ..., Gudnason V, Tivesten Å
J. Clin. Endocrinol. Metab. 108 (12) 3272-3279 [2023-11-17; online 2023-07-01]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
Patient-derived xenografts and single-cell sequencing identifies three subtypes of tumor-reactive lymphocytes in uveal melanoma metastases
Karlsson J, Sah VR, Olofsson R, ..., Nilsson LM, Nilsson JA
eLife - (-) - [2023-11-16]
Spatial Proteomics [Service]
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Structure and function of the S. pombe III-IV-cyt c supercomplex.
Moe A, Dimogkioka AR, Rapaport D, Öjemyr LN, Brzezinski P
Proc. Natl. Acad. Sci. U.S.A. 120 (46) e2307697120 [2023-11-14; online 2023-11-08]
Cryo-EM [Service]
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Impaired migration and metastatic spread of human melanoma by a novel small molecule targeting the transmembrane domain of death receptor p75NTR
Lopes-Rodrigues V, Nyantakyi SA, Lun X, ..., Senger DL, Ibáñez CF
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Chemical Biology Consortium Sweden (CBCS) [Service]
Following the herd: Population genetics of European sheep in time and space
Morell Miranda P
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology - (-) - [2023-11-14; online 2023-11-14]
Ancient DNA [Service]
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Development and validation of a quantitative Proximity Extension Assay instrument with 21 proteins associated with cardiovascular risk (CVD-21).
Siegbahn A, Eriksson N, Assarsson E, ..., Åberg M, Wallentin L
PLoS ONE 18 (11) e0293465 [2023-11-14; online 2023-11-14]
Affinity Proteomics Uppsala [Collaborative]
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Demonstration of reduced efficacy against cyathostomins without change in species composition after pyrantel embonate treatment in Swedish equine establishments.
Hedberg Alm Y, Halvarsson P, Martin F, ..., Törngren V, Tydén E
International Journal for Parasitology: Drugs and Drug Resistance 23 (-) 78-86 [2023-11-14; online 2023-11-14]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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SNP-based high-resolution typing of Chlamydia psittaci from humans and wild birds in Sweden: circulation of the Mat116 genotype reveals the transmission mode to humans.
Herrmann B, Aaziz R, Kaden R, ..., Sandelin LL, Laroucau K
Microbes Infect 26 (3) 105251 [2023-11-11; online 2023-11-11]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
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Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species.
Estravis Barcala M, van der Valk T, Chen Z, ..., Nilsson O, Wu HX
Plant J. - (-) - [2023-11-10; online 2023-11-10]
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A Gradual Transition Toward Anaplasia in Wilms Tumor Through Tolerance to Genetic Damage.
Uno K, Rastegar B, Jansson C, ..., Mengelbier LH, Gisselsson D
Mod. Pathol. 37 (1) 100382 [2023-11-10; online 2023-11-10]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
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Improving diagnostic precision in primary ovarian insufficiency using comprehensive genetic and autoantibody testing.
Vogt EC, Bratland E, Berland S, ..., Husebye E, Øksnes M
Hum. Reprod. - (-) - [2023-11-09; online 2023-11-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Single-cell transcriptomics of human traumatic brain injury reveals activation of endogenous retroviruses in oligodendroglia.
Garza R, Sharma Y, Atacho DAM, ..., Jakobsson J, Marklund N
Cell Rep - (-) 113395 [2023-11-08; online 2023-11-08]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Retrieval of long DNA reads from herbarium specimens
Quatela AS, Cangren P, Jafari F, ..., de Boer H, Oxelman B
AoB Plants - (-) - [2023-11-08; online 2023-11-08]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Eurasian back-migration into Northeast Africa was a complex and multifaceted process.
Hammarén R, Goldstein ST, Schlebusch CM
PLoS ONE 18 (11) e0290423 [2023-11-08; online 2023-11-08]
Bioinformatics Support for Computational Resources [Service]
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Activity and Stability of Nanoconfined Alpha-Amylase in Mesoporous Silica
Iqbal MN, Jaworski A, Pinon AC, Bengtsson T, Hedin N
ACS Mater. Au 3 (6) 659-668 [2023-11-08; online 2023-08-04]
Swedish NMR Centre (SNC) [Collaborative]
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TGF-β induces matrisome pathological alterations and EMT in patient-derived prostate cancer tumoroids.
Fernandes S, Cruz JO, Morazzo S, ..., Filipensky P, Forte G
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Glycoproteomics and MS Proteomics [Service]
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The genomics and evolution of inter-sexual mimicry and female-limited polymorphisms in damselflies.
Willink B, Tunström K, Nilén S, ..., Svensson EI, Wheat CW
Nat Ecol Evol - (-) - [2023-11-06; online 2023-11-06]
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Regulation of the general stress response sigma factor σT by Lon-mediated proteolysis.
Akar R, Fink MJ, Omnus DJ, Jonas K
J. Bacteriol. 205 (11) e0022823 [2023-11-06; online 2023-11-06]
Global Proteomics and Proteogenomics [Service]
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On the Conformation of Dimeric Acceptors and Their Polymer Solar Cells with Efficiency over 18 .
Wu J, Ling Z, Franco LR, ..., Anthopoulos TD, Wang E
Angew. Chem. Int. Ed. Engl. 62 (45) e202302888 [2023-11-06; online 2023-07-18]
Swedish NMR Centre (SNC) [Service]
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Candida albicans induces neutrophil extracellular traps and leucotoxic hypercitrullination via candidalysin.
Unger L, Skoluda S, Backman E, ..., Naglik JR, Urban CF
EMBO Rep. 24 (11) e57571 [2023-11-06; online 2023-10-05]
Integrated Microscopy Technologies Umeå [Service]
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BLR: a flexible pipeline for haplotype analysis of multiple linked-read technologies.
Höjer P, Frick T, Siga H, ..., Martin M, Ahmadian A
Nucleic Acids Res. - (-) - [2023-11-06; online 2023-11-06]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Antigen-presenting autoreactive B cells activate regulatory T cells and suppress autoimmune arthritis in mice.
Aoun M, Coelho A, Krämer A, ..., Burkhardt H, Holmdahl R
J. Exp. Med. 220 (11) - [2023-11-06; online 2023-09-11]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
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LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification.
Garza R, Atacho DAM, Adami A, ..., Douse CH, Jakobsson J
Sci Adv 9 (44) eadh9543 [2023-11-03; online 2023-11-01]
Clinical Genomics [Service] Clinical Genomics Lund [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Chiaro J, Antignani G, Feola S, ..., Lehtiö J, Cerullo V
Nat Commun 14 (1) 7056 [2023-11-03; online 2023-11-03]
Global Proteomics and Proteogenomics [Technology development]
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UROSCAN and UROSCANSEQ: a large-scale multicenter effort towards translation of molecular bladder cancer subtypes into clinical practice – from biobank to RNA-sequencing in real time
Liedberg F, Abrahamsson J, Bernardo C, ..., Sjödahl G, Eriksson P
Scandinavian Journal of Urology 57 (1-6) 2-9 [2023-11-02; online 2022-12-20]
Clinical Genomics [Collaborative] Clinical Genomics Lund [Collaborative]
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The development of foliar fungal communities of nursery-grown Pinus sylvestris seedlings
Larsson R, Menkis A, Skogström O, ..., Larsson M, Olson Å
Scandinavian Journal of Forest Research - (-) 1-16 [2023-11-02; online 2023-11-02]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Novel PNKP mutations associated with reduced DNA single-strand break repair and severe microcephaly, seizures, and developmental delay.
Thuresson A, Brazina J, Akram T, ..., Soussi Zander C, Caldecott KW
Mol Genet Genomic Med - (-) e2295 [2023-11-02; online 2023-11-02]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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High-resolution comparative atomic structures of two Giardiavirus prototypes infectingG. duodenalisparasite
Wang H, Gianluca M, Munke A, ..., Lalle M, Okamoto K
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Cryo-EM [Service]
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Structure and dynamics of differential ligand binding in the human ρ-type GABAA receptor.
Cowgill J, Fan C, Haloi N, ..., Howard RJ, Lindahl E
Neuron 111 (21) 3450-3464.e5 [2023-11-01; online 2023-09-01]
Cryo-EM [Service]
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Exploring different methodological approaches to unlock paleobiodiversity in peat profiles using ancient DNA.
Fracasso I, Zaccone C, Oskolkov N, ..., Ventura M, Borruso L
Sci. Total Environ. 908 (-) 168159 [2023-11-01; online 2023-11-01]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Evidence of Site-Specific and Male-Biased Germline Mutation Rate in a Wild Songbird.
Zhang H, Lundberg M, Tarka M, Hasselquist D, Hansson B
Genome Biol Evol 15 (11) - [2023-11-01; online 2023-10-04]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Demographic reconstruction of the Western sheep expansion from whole-genome sequences.
Morell Miranda P, Soares AER, Günther T
G3 (Bethesda) 13 (11) - [2023-11-01; online 2023-09-07]
Bioinformatics Support for Computational Resources [Service]
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The intracellular helical bundle of human glucose transporter GLUT4 is important for complex formation with ASPL.
Huang P, Åbacka H, Varela D, ..., André I, Lindkvist-Petersson K
FEBS Open Bio 13 (11) 2094-2107 [2023-11-00; online 2023-09-28]
Structural Proteomics [Collaborative]
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Targeting oxidation sites on boreal acid sulfate soil macropore surfaces mitigates acid and metal release to recipient water streams
Högfors-Rönnholm E, Stén P, Christel S, ..., Dopson M, Engblom S
Applied Geochemistry 158 (-) 105779 [2023-11-00; online 2023-11-00]
Bioinformatics Support for Computational Resources [Service]
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Structure and electromechanical coupling of a voltage-gated Na+/H+ exchanger.
Yeo H, Mehta V, Gulati A, Drew D
Nature 623 (7985) 193-201 [2023-11-00; online 2023-10-25]
Cryo-EM [Service]
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Smoking affects epigenetic ageing of lung bronchoalveolar lavage cells in Multiple Sclerosis.
Klose D, Needhamsen M, Ringh MV, ..., Jagodic M, Kular L
Mult Scler Relat Disord 79 (-) 104991 [2023-11-00; online 2023-09-09]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sensitivity of the SARS-CoV-2 BA.2.86 variant to prevailing neutralising antibody responses.
Sheward DJ, Yang Y, Westerberg M, ..., Albert J, Murrell B
Lancet Infect Dis 23 (11) e462-e463 [2023-11-00; online 2023-09-27]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
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Protein profiling in plasma for biomarkers of seizure.
Akel S, Banote RK, Asztely F, Zelano J
Epilepsy Res 197 (-) 107241 [2023-11-00; online 2023-10-11]
Affinity Proteomics Stockholm [Service]
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Preanalytic handling of clinical blood samples in assessing immunological proteins - Role of storage duration.
Eren F, Schwieler L, Orhan F, ..., Engberg G, Erhardt S
Brain, Behavior, and Immunity 114 (-) 163-164 [2023-11-00; online 2023-08-16]
Affinity Proteomics Stockholm [Service]
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Physical activity in childhood and later risk of inflammatory bowel disease: A Scandinavian birth cohort study.
Lerchova T, Östensson M, Sigvardsson I, ..., Mårild K, Ludvigsson J
United European Gastroenterol J 11 (9) 874-883 [2023-11-00; online 2023-10-04]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Nutrient availability and grazing influence the strength of priority effects during freshwater bacterial community coalescence.
Lumpi T, Guo X, Lindström ES
Environ. Microbiol. 25 (11) 2289-2302 [2023-11-00; online 2023-06-28]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Long-Term Pollution Does Not Inhibit Denitrification and DNRA by Adapted Benthic Microbial Communities.
Broman E, Abdelgadir M, Bonaglia S, ..., Nascimento FJA, Sjöling S
Microb. Ecol. 86 (4) 2357-2372 [2023-11-00; online 2023-05-24]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Intramammary infections and risk factors in freshly calved heifers in Swedish dairy herds.
Persson Waller K, Lundberg Å, Börjesson S, Nyman AK
J Dairy Sci 106 (11) 7893-7907 [2023-11-00; online 2023-05-18]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Inclusion body myositis with early onset: a population-based study.
Lindgren U, Hedberg-Oldfors C, Pullerits R, Lindberg C, Oldfors A
J. Neurol. 270 (11) 5483-5492 [2023-11-00; online 2023-07-27]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
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Host Phylogeny Structures the Gut Bacterial Community Within Galerucella Leaf Beetles.
An Y, Braga MP, Garcia SL, Grudzinska-Sterno M, Hambäck PA
Microb. Ecol. 86 (4) 2477-2487 [2023-11-00; online 2023-06-14]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Graphene Oxide Attenuates Toxicity of Amyloid‐β Aggregates in Yeast by Promoting Disassembly and Boosting Cellular Stress Response
Chen X, Pandit S, Shi L, ..., Petranovic D, Mijakovic I
Adv Funct Materials 33 (45) - [2023-11-00; online 2023-07-07]
Integrated Microscopy Technologies Gothenburg [Service]
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Global blood miRNA profiling unravels early signatures of immunogenicity of Ebola vaccine rVSVΔG-ZEBOV-GP
Vianello E, Persson J, Andersson B, ..., Ottenhoff THM, Harandi AM
iScience - (-) 108574 [2023-11-00; online 2023-11-00]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Genotypic characterization of Staphylococcus chromogenes and Staphylococcus simulans from Swedish cases of bovine subclinical mastitis.
Persson Waller K, Myrenås M, Börjesson S, ..., Östlund E, Cha W
J Dairy Sci 106 (11) 7991-8004 [2023-11-00; online 2023-08-23]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
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Comprehensive analyses of circulating cardiometabolic proteins and objective measures of fat mass.
Titova OE, Brunius C, Warensjö Lemming E, ..., Michaëlsson K, Larsson SC
Int J Obes (Lond) 47 (11) 1043-1049 [2023-11-00; online 2023-08-07]
Affinity Proteomics Uppsala [Service] Bioinformatics Support for Computational Resources [Service]
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CGG toolkit: Software components for computational genomics.
Vasileiou D, Karapiperis C, Baltsavia I, ..., Enright AJ, Ouzounis CA
PLoS Comput. Biol. 19 (11) e1011498 [2023-11-00; online 2023-11-07]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Body Mass Index and the Risk of Rheumatic Disease: Linear and Nonlinear Mendelian Randomization Analyses.
Karlsson T, Hadizadeh F, Rask-Andersen M, Johansson Å, Ek WE
Arthritis & rheumatology (Hoboken, N.J.) 75 (11) 2027-2035 [2023-11-00; online 2023-09-28]
Bioinformatics Support for Computational Resources [Service]
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Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency.
Le Voyer T, Parent AV, Liu X, ..., Casanova JL, Puel A
Nature 623 (7988) 803-813 [2023-11-00; online 2023-11-08]
Autoimmunity and Serology Profiling [Service] Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
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An atlas of genetic determinants of forearm fracture.
Nethander M, Movérare-Skrtic S, Kämpe A, ..., Richards JB, Ohlsson C
Nat. Genet. 55 (11) 1820-1830 [2023-11-00; online 2023-11-02]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Synthesis of Metal–Organic Frameworks through Enzymatically Recycled Polyethylene Terephthalate
Cao Z, Fu X, Li H, ..., Zelezniak A, Mijakovic I
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Swedish NMR Centre (SNC) [Service]
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Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter
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Cryo-EM [Service]
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Proteomics reveal biomarkers for diagnosis, disease activity and long-term disability outcomes in multiple sclerosis.
Åkesson J, Hojjati S, Hellberg S, ..., Ernerudh J, Gustafsson M
Nat Commun 14 (1) 6903 [2023-10-30; online 2023-10-30]
Affinity Proteomics Uppsala [Service] NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Reduction of body weight by increased loading is associated with activation of norepinephrine neurones in the medial nucleus of the solitary tract.
Zlatkovic J, Dalmau Gasull A, Hägg D, ..., Anesten F, Jansson JO
J Neuroendocrinol - (-) e13352 [2023-10-26; online 2023-10-26]
Integrated Microscopy Technologies Gothenburg [Service]
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Mucosal and Serum Antibodies 3 Weeks after Symptomatic BA.2.86 Infection.
Bladh O, Greilert-Norin N, Havervall S, ..., Klingström J, Thålin C
N. Engl. J. Med. 389 (17) 1626-1628 [2023-10-26; online 2023-10-27]
Affinity Proteomics Uppsala [Collaborative]
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Translatome analysis of tuberous sclerosis complex 1 patient-derived neural progenitor cells reveals rapamycin-dependent and independent alterations.
Aksoylu IS, Martin P, Robert F, ..., Larsson O, Ramesh V
Mol Autism 14 (1) 39 [2023-10-25; online 2023-10-25]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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The Release and Spread of Basidiospores of Red-Listed Wood-Decay Fungus Fistulina hepatica in Oak Stands
Marčiulynas A, Menkis A
Diversity 15 (11) 1110 [2023-10-25; online 2023-10-25]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Quantifying fluorescence lifetime responsiveness of environment sensitive probes for membrane fluidity measurements
Ragaller F, Sjule E, Urem YB, ..., Blom H, Sezgin E
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Integrated Microscopy Technologies Stockholm [Collaborative]
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Complete Mitochondrial DNA Genome Variation in the Swedish Population.
Sturk-Andreaggi K, Bodner M, Ring JD, ..., Marshall C, Allen M
Genes 14 (11) - [2023-10-25; online 2023-10-25]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow.
Pochon Z, Bergfeldt N, Kırdök E, ..., Unneberg P, Oskolkov N
Genome Biol. 24 (1) 242 [2023-10-23; online 2023-10-23]
Ancient DNA [Technology development] Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Polymorphic parasitic larvae cooperate to build swimming colonies luring hosts.
Krupenko D, Miroliubov A, Kryukov E, ..., Kastriti ME, Adameyko I
Curr. Biol. 33 (20) 4524-4531.e4 [2023-10-23; online 2023-09-22]
Ancient DNA [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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LPMO-supported saccharification of biomass: effects of continuous aeration of reaction mixtures with variable fractions of water-insoluble solids and cellulolytic enzymes.
Tang C, Gandla ML, Jönsson LJ
Biotechnol Biofuels Bioprod 16 (1) 156 [2023-10-21; online 2023-10-21]
Integrated Microscopy Technologies Umeå [Service] Swedish NMR Centre (SNC) [Service]
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Structural foundation for the role of enterococcal PrgB in conjugation, biofilm formation, and virulence.
Sun WS, Lassinantti L, Järvå M, ..., Ter Beek J, Berntsson RP
Elife 12 (-) - [2023-10-20; online 2023-10-20]
Cryo-EM [Service]
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Screening for atypical porcine pestivirus in Swedish boar semen used for artificial insemination and a characterisation of the seminal RNA microbiome including the virome.
Stenberg H, Malmberg M, Hayer J
BMC Vet Res 19 (1) 219 [2023-10-20; online 2023-10-20]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Synergistic metabolism of salivary MUC5B in oral commensal bacteria during early biofilm formation.
Robertsson C, Svensäter G, Davies JR, ..., Malmodin D, Wickström C
Microbiol Spectr - (-) e0270423 [2023-10-19; online 2023-10-19]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks.
Sendell-Price AT, Tulenko FJ, Pettersson M, ..., Andersson L, Schartl M
Nat Commun 14 (1) 6628 [2023-10-19; online 2023-10-19]
Bioinformatics Support for Computational Resources [Service]
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FBXL12 degrades FANCD2 to regulate replication recovery and promote cancer cell survival under conditions of replication stress.
Brunner A, Li Q, Fisicaro S, ..., Orre LM, Sangfelt O
Mol. Cell 83 (20) 3720-3739.e8 [2023-10-19; online 2023-08-16]
Global Proteomics and Proteogenomics [Collaborative]
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Autoantibody Profiling and Anti-Kinesin Reactivity in ANCA-Associated Vasculitis.
Mescia F, Bayati S, Brouwer E, ..., Nilsson P, Pin E
Int J Mol Sci 24 (20) - [2023-10-19; online 2023-10-19]
Autoimmunity and Serology Profiling [Collaborative]
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Low Circulating Valine Associate With High Risk of Hip Fractures.
Grahnemo L, Eriksson AL, Nethander M, ..., Pettersson-Kymmer U, Ohlsson C
J. Clin. Endocrinol. Metab. 108 (11) e1384-e1393 [2023-10-18; online 2023-05-14]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Untargeted plasma metabolomics and risk of colorectal cancer-an analysis nested within a large-scale prospective cohort.
Vidman L, Zheng R, Bodén S, ..., Brunius C, Van Guelpen B
Cancer Metab 11 (1) 17 [2023-10-17; online 2023-10-17]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
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Range-wide and temporal genomic analyses reveal the consequences of near-extinction in Swedish moose.
Dussex N, Kurland S, Olsen RA, ..., Dalén L, Laikre L
Commun Biol 6 (1) 1035 [2023-10-17; online 2023-10-17]
Bioinformatics Support for Computational Resources [Service] NGI Other [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Label-Free Quantitative Thermal Proteome Profiling Reveals Target Transcription Factors with Activities Modulated by MC3R Signaling.
Sandbaumhüter FA, Nezhyva M, Andrén PE, Jansson ET
Anal. Chem. 95 (41) 15400-15408 [2023-10-17; online 2023-10-07]
Spatial Mass Spectrometry [Collaborative]
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Fungi Inhabiting Stem Wounds of Quercus robur following Bark Stripping by Deer Animals
Marčiulynas A, Sirgedaitė-Šėžienė V, Menkis A
Forests 14 (10) 2077 [2023-10-17; online 2023-10-17]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Modified N-acyl-L-homoserine lactone compounds abrogate Las-dependent quorum-sensing response in human pathogen Pseudomonas aeruginosa.
Ballante F, Turkina MV, Ntzouni M, Magnusson KE, Vikström E
Front Mol Biosci 10 (-) 1264773 [2023-10-16; online 2023-10-16]
Chemical Biology Consortium Sweden (CBCS) [Collaborative] Clinical Genomics [Service] Clinical Genomics Linköping [Service]
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Endothelial VEGFR2-PLCγ signaling regulates vascular permeability and antitumor immunity through eNOS/Src.
Sjöberg E, Melssen M, Richards M, ..., Dimberg A, Claesson-Welsh L
J. Clin. Invest. 133 (20) - [2023-10-16; online 2023-10-16]
Global Proteomics and Proteogenomics [Service]
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Design, structure and plasma binding of ancestral β-CoV scaffold antigens.
Hueting D, Schriever K, Sun R, ..., Andréll J, Syrén PO
Nat Commun 14 (1) 6527 [2023-10-16; online 2023-10-16]
Cryo-EM [Service] Drug Discovery and Development (DDD) [Service]
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Associations between the Bacterial Composition of Farm Bulk Milk and the Microbiota in the Resulting Swedish Long-Ripened Cheese.
Sun L, Höjer A, Johansson M, ..., Dicksved J, Lundh Å
Foods 12 (20) - [2023-10-16; online 2023-10-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Quantification of membrane fluidity in bacteria using TIR-FCS
Barbotin A, Billaudeau C, Sezgin E, Carballido-López R
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Integrated Microscopy Technologies Stockholm [Service]
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Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis.
Mastropasqua F, Oksanen M, Soldini C, ..., Bölte S, Tammimies K
Biol Open 12 (10) - [2023-10-15; online 2023-10-10]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale.
Sounart H, Voronin D, Masarapu Y, ..., Ghedin E, Giacomello S
Nat Commun 14 (1) 6500 [2023-10-14; online 2023-10-14]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Single-Cell RNA Analysis Reveals Cell-Intrinsic Functions of CAR T Cells Correlating with Response in a Phase II Study of Lymphoma Patients.
Sarén T, Ramachandran M, Gammelgård G, ..., Enblad G, Essand M
Clin. Cancer Res. 29 (20) 4139-4152 [2023-10-13; online 2023-08-04]
Affinity Proteomics Uppsala [Service] Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Rewiring of the promoter-enhancer interactome and regulatory landscape in glioblastoma orchestrates gene expression underlying neurogliomal synaptic communication.
Chakraborty C, Nissen I, Vincent CA, ..., Hörnblad A, Remeseiro S
Nat Commun 14 (1) 6446 [2023-10-13; online 2023-10-13]
Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Integrated Genomic and Transcriptomic Analysis Improves Disease Classification and Risk Stratification of MDS with Ring Sideroblasts.
Todisco G, Creignou M, Bernard E, ..., Papaemmanuil E, Hellström-Lindberg E
Clin. Cancer Res. 29 (20) 4256-4267 [2023-10-13; online 2023-07-27]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Genome-wide DNA methylation profiling in Lyme neuroborreliosis reveals altered methylation patterns of HLA genes.
Henningsson AJ, Hellberg S, Lerm M, Sayyab S
J. Infect. Dis. - (-) - [2023-10-12; online 2023-10-12]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
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Open-source, high-throughput targeted in-situ transcriptomics for developmental biologists
Lee H, Langseth CM, Salas SM, ..., Grillo M, Nilsson M
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In Situ Sequencing (ISS) [Technology development]
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Multivalent antigen display on nanoparticle immunogens increases B cell clonotype diversity and neutralization breadth to pneumoviruses.
Ols S, Lenart K, Arcoverde Cerveira R, ..., King NP, Loré K
Immunity 56 (10) 2425-2441.e14 [2023-10-10; online 2023-09-08]
Bioinformatics (NBIS) [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH.
Lysenkova Wiklander M, Övernäs E, Lagensjö J, ..., Liljedahl U, Nordlund J
BMC Res Notes 16 (1) 265 [2023-10-10; online 2023-10-10]
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BirthSeq, a new method to isolate and analyze dated cells from any tissue in vertebrates
Rueda-Alaña E, Grillo M, Vazquez E, ..., Nilsson M, García-Moreno F
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In Situ Sequencing (ISS) [Service]
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An end-to-end workflow for multiplexed image processing and analysis.
Windhager J, Zanotelli VRT, Schulz D, ..., Bodenmiller B, Eling N
Nat Protoc - (-) - [2023-10-10; online 2023-10-10]
BioImage Informatics [Service] Bioinformatics (NBIS) [Service]
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Transfer of cetirizine/levocetirizine into human breast milk and estimation of drug exposure to infants through breastfeeding - a human lactation study from the ConcePTION project.
Nordeng H, Wegler C, Lindqvist A, ..., Baranczewski P, Spigset O
Basic Clin Pharmacol Toxicol - (-) - [2023-10-09; online 2023-10-09]
Drug Discovery and Development (DDD) [Collaborative]
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Exploring the differences in serum metabolite profiles after intake of red meat in women with rheumatoid arthritis and a matched control group.
Lindqvist HM, Gjertsson I, Hulander E, Bärebring L, Winkvist A
Eur J Nutr - (-) - [2023-10-09; online 2023-10-09]
Swedish NMR Centre (SNC) [Service]
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Low mutation load in a supergene underpinning alternative male mating strategies in ruff (Calidris pugnax).
Hill J, Enbody ED, Bi H, ..., Widemo F, Andersson L
Mol. Biol. Evol. 40 (12) msad224 [2023-10-06; online 2023-10-06]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Introgression underlies phylogenetic uncertainty but not parallel plumage evolution in a recent songbird radiation.
Rancilhac L, Enbody ED, Harris R, ..., Andersson L, Alström P
Syst. Biol. - (-) - [2023-10-06; online 2023-10-06]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Mitochondrial heteroplasmic shifts reveal a positive selection of breast cancer.
Li Y, Sundquist K, Vats S, ..., Sundquist J, Memon AA
J Transl Med 21 (1) 696 [2023-10-05; online 2023-10-05]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Proteomic profiling identifies novel inflammation-related plasma proteins associated with ischemic stroke outcome.
Angerfors A, Brännmark C, Lagging C, ..., Jern C, Stanne TM
J Neuroinflammation 20 (1) 224 [2023-10-04; online 2023-10-04]
Affinity Proteomics Uppsala [Service]
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Metabolomic and transcriptomic analyses identify external conditions and key genes underlying high levels of toxic glycoalkaloids in tubers of stress-sensitive potato cultivars.
Merino I, Guasca AO, Krmela A, ..., Schulzova V, Sitbon F
Front Plant Sci 14 (-) 1210850 [2023-10-04; online 2023-10-04]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Copy number variations and their effect on the plasma proteome.
Schmitz D, Li Z, Lo Faro V, ..., Rafati N, Johansson Å
Genetics - (-) - [2023-10-04; online 2023-10-04]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Spatial transcriptomic analysis of virtual prostate biopsy reveals confounding effect of tissue heterogeneity on genomic signatures.
Figiel S, Yin W, Doultsinos D, ..., Cussenot O, Lamb AD
Mol. Cancer 22 (1) 162 [2023-10-03; online 2023-10-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Photo-physical characterization of high triplet yield brominated fluoresceins by transient state (TRAST) spectroscopy.
Demirbay B, Baryshnikov G, Haraldsson M, ..., Ågren H, Widengren J
Methods Appl. Fluoresc. 11 (4) - [2023-10-03; online 2023-10-03]
Chemical Biology Consortium Sweden (CBCS) [Collaborative] Swedish Metabolomics Centre (SMC) [Service]
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Clinical and genetic analyses of a Swedish patient series diagnosed with ataxia.
Gorcenco S, Kafantari E, Wallenius J, ..., Karrman K, Puschmann A
J. Neurol. - (-) - [2023-10-03; online 2023-10-03]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
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The long non-coding RNA LINC00707 interacts with Smad proteins to regulate TGFβ signaling and cancer cell invasion.
Gélabert C, Papoutsoglou P, Golán I, ..., Caja L, Moustakas A
Cell Commun Signal 21 (1) 271 [2023-10-02; online 2023-10-02]
NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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A T cell receptor targeting a recurrent driver mutation in FLT3 mediates elimination of primary human acute myeloid leukemia in vivo.
Giannakopoulou E, Lehander M, Virding Culleton S, ..., Woll PS, Olweus J
Nat Cancer - (-) - [2023-10-02; online 2023-10-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Elevated Adipocyte Membrane Phospholipid Saturation Does Not Compromise Insulin Signaling.
Palmgren H, Petkevicius K, Bartesaghi S, ..., Peng XR, Pilon M
Diabetes 72 (10) 1350-1363 [2023-10-01; online 2022-12-30]
Integrated Microscopy Technologies Gothenburg [Service]
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The dynamics of touch-responsive gene expression in cereals.
Darwish E, Ghosh R, Bentzer J, ..., Sirijovski N, Van Aken O
Plant J. 116 (1) 282-302 [2023-10-00; online 2023-06-08]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The disease-causing mutation p.F907I reveals a novel pathogenic mechanism for POLγ-related diseases.
Erdinc D, Macao B, Valenzuela S, ..., Wredenberg A, Falkenberg M
Biochim Biophys Acta Mol Basis Dis 1869 (7) 166786 [2023-10-00; online 2023-06-10]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Similarity in milk microbiota in replicates.
Dahlberg J, Pelve E, Dicksved J
Microbiologyopen 12 (5) e1383 [2023-10-00; online 2023-10-25]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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SARS-CoV-2-related mortality decrease in nursing home residents given multiple COVID-19 boosters.
Blom K, Fjällström P, Molnár C, ..., Forsell MNE, Johansson AF
Lancet Infect Dis 23 (10) e393-e394 [2023-10-00; online 2023-09-13]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Quantification of proteomic profile changes in the hemolymph of crayfish during in vitro coagulation.
Mengal K, Kor G, Siino V, ..., Levander F, Niksirat H
Dev. Comp. Immunol. 147 (-) 104760 [2023-10-00; online 2023-06-16]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Precision medicine in rare diseases: What is next?
Tesi B, Boileau C, Boycott KM, ..., Nordgren A, Lindstrand A
J. Intern. Med. 294 (4) 397-412 [2023-10-00; online 2023-06-01]
Clinical Genomics [Collaborative] Clinical Genomics Stockholm [Collaborative]
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Precision cancer medicine: Concepts, current practice, and future developments.
Edsjö A, Holmquist L, Geoerger B, ..., Siu LL, Stenzinger A
J. Intern. Med. 294 (4) 455-481 [2023-10-00; online 2023-08-28]
Global Proteomics and Proteogenomics [Technology development]
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Origin matters: Using a local reference genome improves measures in population genomics.
Thorburn DJ, Sagonas K, Binzer-Panchal M, ..., Lenz TL, Eizaguirre C
Mol Ecol Resour 23 (7) 1706-1723 [2023-10-00; online 2023-07-25]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Lowering of Circulating Sclerostin May Increase Risk of Atherosclerosis and Its Risk Factors: Evidence From a Genome-Wide Association Meta-Analysis Followed by Mendelian Randomization.
Zheng J, Wheeler E, Pietzner M, ..., Davey Smith G, Tobias JH
Arthritis & rheumatology (Hoboken, N.J.) 75 (10) 1781-1792 [2023-10-00; online 2023-08-03]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
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Increased MYB alternative promoter usage is associated with relapse in acute lymphoblastic leukemia.
Fehr A, Arvidsson G, Nordlund J, ..., Stenman G, Andersson MK
Genes Chromosomes Cancer 62 (10) 597-606 [2023-10-00; online 2023-05-23]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Durability of antireflective SiO2 coatings with closed pore structure
Zäll E, Karlsson S, Järn M, ..., Lundberg P, Wågberg T
Solar Energy Materials and Solar Cells 261 (-) 112521 [2023-10-00; online 2023-10-00]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Decontamination of biofilm-contaminated implant surfaces: An in vitro evaluation.
Ichioka Y, Virto L, Nuevo P, ..., Sanz M, Berglundh T
Clin Oral Implants Res 34 (10) 1058-1072 [2023-10-00; online 2023-07-20]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Circulating soluble IL-6 receptor associates with plaque inflammation but not with atherosclerosis severity and cardiovascular risk.
Edsfeldt A, Gonçalves I, Vigren I, ..., Khan F, Nilsson J
Vascul Pharmacol 152 (-) 107214 [2023-10-00; online 2023-08-25]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus.
Hedenstedt A, Reid S, Sayadi A, ..., Sandling JK, Leonard D
Lupus Sci Med 10 (2) - [2023-10-00; online 2023-10-17]
NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Alterations in the Serum Proteome Following Electroconvulsive Therapy for a Major Depressive Episode: A Longitudinal Multicenter Study.
Göteson A, Clements CC, Juréus A, ..., Pålsson E, Landén M
Biol Psychiatry Glob Open Sci 3 (4) 884-892 [2023-10-00; online 2022-12-12]
Affinity Proteomics Uppsala [Service]
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APP-BACE1 Interaction and Intracellular Localization Regulate Aβ Production in iPSC-Derived Cortical Neurons.
Roselli S, Satir TM, Camacho R, ..., Zetterberg H, Agholme L
Cell Mol Neurobiol 43 (7) 3653-3668 [2023-10-00; online 2023-06-24]
Integrated Microscopy Technologies Gothenburg [Service]
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A glycomic workflow for LC-MS/MS analysis of urine glycosaminoglycan biomarkers in mucopolysaccharidoses.
Nilsson J, Persson A, Vorontsov E, ..., Larson G, Blomqvist M
Glycoconj J 40 (5) 523-540 [2023-10-00; online 2023-07-18]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae).
Steffen K, Proux-Wéra E, Soler L, ..., Sundh J, Cárdenas P
G3 (Bethesda) 13 (10) - [2023-09-30; online 2023-08-25]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Inflammatory Gene Profile and Particle Presence in Peri-Implant Mucosa: a Pilot Study on 9 Patients.
Olander J, Barkarmo S, Hammarström Johansson P, Wennerberg A, Stenport VF
J Oral Maxillofac Res 14 (3) e2 [2023-09-30; online 2023-09-30]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Targeting Toll-like receptor-driven systemic inflammation by engineering an innate structural fold into drugs.
Petruk G, Puthia M, Samsudin F, ..., Lindstedt S, Schmidtchen A
Nat Commun 14 (1) 6097 [2023-09-29; online 2023-09-29]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Structural Proteomics [Collaborative]
PubMed DOI Crossref
Community-wide genome sequencing reveals 30 years of Darwin's finch evolution.
Enbody ED, Sendell-Price AT, Sprehn CG, ..., Grant PR, Andersson L
Science 381 (6665) eadf6218 [2023-09-29; online 2023-09-29]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Oral fungal profiling and risk of nasopharyngeal carcinoma: a population-based case-control study.
Chen Y, Li W, Chang ET, ..., Zhang Z, Ye W
EBioMedicine 96 (-) 104813 [2023-09-28; online 2023-09-28]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
The relative impact of parental and current environment on plant transcriptomes depends on type of stress and genotype.
Earley TS, Feiner N, Alvarez MF, Coolon JD, Sultan SE
Proc. Biol. Sci. 290 (2007) 20230824 [2023-09-27; online 2023-09-27]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Single-cell transcriptomics delineates the immune cell landscape in equine lower airways and reveals upregulation of FKBP5 in horses with asthma.
Riihimäki M, Fegraeus K, Nordlund J, ..., Hellman L, Raine A
Sci Rep 13 (1) 16261 [2023-09-27; online 2023-09-27]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Collaborative] NGI Single cell [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort during 2022-2023.
Haars J, Palanisamy N, Wallin F, ..., Kaden R, Lennerstrand J
Microorganisms 11 (10) - [2023-09-27; online 2023-09-27]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Exploiting solid-state dynamic nuclear polarization NMR spectroscopy to establish the spatial distribution of polymorphic phases in a solid material.
Cousin SF, Hughes CE, Ziarelli F, ..., Pinon AC, Thureau P
Chem. Sci. 14 (37) 10121-10128 [2023-09-27; online 2023-06-23]
Swedish NMR Centre (SNC) [Technology development]
PubMed DOI Crossref
CO2 Mineralization by MgO Nanocubes in Nanometric Water Films.
Luong NT, Veyret N, Boily JF
ACS Appl Mater Interfaces 15 (38) 45055-45063 [2023-09-27; online 2023-09-14]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Unraveling mucolipidosis type III gamma through whole genome sequencing in late-onset retinitis pigmentosa: a case report.
De Geer K, Mascianica K, Naess K, ..., Lindstrand A, Björck E
BMC Ophthalmol 23 (1) 394 [2023-09-26; online 2023-09-26]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
The draft genome of the microscopic Nemertoderma westbladi sheds light on the evolution of Acoelomorpha genomes.
Abalde S, Tellgren-Roth C, Heintz J, Vinnere Pettersson O, Jondelius U
Front Genet 14 (-) 1244493 [2023-09-26; online 2023-09-26]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Single-cell multiomics of human fetal hematopoiesis define a developmental-specific population and a fetal signature.
Sommarin MNE, Olofzon R, Palo S, ..., Karlsson G, Böiers C
Blood Adv 7 (18) 5325-5340 [2023-09-26; online 2023-06-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Combined GLUT1 and OXPHOS inhibition eliminates acute myeloid leukemia cells by restraining their metabolic plasticity.
Rodriguez-Zabala M, Ramakrishnan R, Reinbach K, ..., Woods NB, Järås M
Blood Adv 7 (18) 5382-5395 [2023-09-26; online 2023-07-28]
Clinical Genomics [Service] Clinical Genomics Lund [Service] Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Molecular anatomy of adult mouse leptomeninges.
Pietilä R, Del Gaudio F, He L, ..., Andrae J, Betsholtz C
Neuron - (-) - [2023-09-25; online 2023-09-25]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Fast and sensitive validation of fusion transcripts in whole-genome sequencing data.
Hafstað V, Häkkinen J, Persson H
BMC Bioinformatics 24 (1) 359 [2023-09-23; online 2023-09-23]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
A subset of type-II collagen-binding antibodies prevents experimental arthritis by inhibiting FCGR3 signaling in neutrophils.
Xu Z, Xu B, Lundström SL, ..., Zubarev RA, Holmdahl R
Nat Commun 14 (1) 5949 [2023-09-23; online 2023-09-23]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
The microbial biodiversity at the archeological site of Tel Megiddo (Israel).
Zhang Y, Ruff SE, Oskolkov N, ..., Mason CE, Elhaik E
Front Microbiol 14 (-) 1253371 [2023-09-22; online 2023-09-22]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Multivalent design of the monoclonal SynO2 antibody improves binding strength to soluble α-Synuclein aggregates.
Petersen I, Ali MI, Petrovic A, ..., Bondza S, Hultqvist G
MAbs 15 (1) 2256668 [2023-09-22; online 2023-09-22]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Comprehensive proteomics and meta-analysis of COVID-19 host response.
Babačić H, Christ W, Araújo JE, ..., Klingström J, Pernemalm M
Nat Commun 14 (1) 5921 [2023-09-22; online 2023-09-22]
Global Proteomics and Proteogenomics [Collaborative]
PubMed DOI Crossref
Selected β-glucans act as immune-training agents by improving anti-mycobacterial activity in human macrophages - a pilot study.
Braian C, Karlsson L, Das J, Lerm M
J Innate Immun 15 (1) 751-764 [2023-09-21; online 2023-09-21]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Non-classical HLA-E restricted CMV 15-mer peptides are recognized by adaptive NK cells and induce memory responses.
Martín Almazán N, Sala BM, Sandalova T, ..., Achour A, Sarhan D
Front Immunol 14 (-) 1230718 [2023-09-21; online 2023-09-21]
Global Proteomics and Proteogenomics [Service]
PubMed DOI Crossref
Imaging of fibrogenesis in the liver by [18F]TZ-Z09591, an Affibody molecule targeting platelet derived growth factor receptor β.
Wegrzyniak O, Zhang B, Rokka J, ..., Eriksson J, Eriksson O
EJNMMI Radiopharm Chem 8 (1) 23 [2023-09-21; online 2023-09-21]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Strict self-isolation did not protect Swedish cancer patients on active treatment from the risk of becoming seropositive for SARS-CoV-2.
Ginman B, Pahnke S, Freyhult E, ..., Enblad G, Glimelius I
Acta Oncol - (-) 1-9 [2023-09-20; online 2023-09-20]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Identification of Novel Glycans in the Mucus Layer of Shark and Skate Skin.
Bachar-Wikstrom E, Thomsson KA, Sihlbom C, ..., Lindén SK, Wikstrom JD
Int J Mol Sci 24 (18) - [2023-09-20; online 2023-09-20]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Single-cell sequencing of tumor-associated macrophages in a Drosophila model.
Khalili D, Mohammed M, Kunc M, ..., Ankarklev J, Theopold U
Front Immunol 14 (-) 1243797 [2023-09-19; online 2023-09-19]
Bioinformatics Support for Computational Resources [Service] Microbial Single Cell Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Prosaposin maintains lipid homeostasis in dopamine neurons and counteracts experimental parkinsonism in rodents.
He Y, Kaya I, Shariatgorji R, ..., Andren PE, Svenningsson P
Nat Commun 14 (1) 5804 [2023-09-19; online 2023-09-19]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Self-Assembly of RGD-Functionalized Recombinant Spider Silk Protein into Microspheres in Physiological Buffer and in the Presence of Hyaluronic Acid.
Ornithopoulou E, Åstrand C, Gustafsson L, Crouzier T, Hedhammar M
ACS Appl Bio Mater 6 (9) 3696-3705 [2023-09-18; online 2023-08-14]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Ecogenomics and cultivation reveal distinctive viral-bacterial communities in the surface microlayer of a Baltic Sea slick.
Rahlff J, Wietz M, Giebel HA, ..., Antson A, Holmfeldt K
ISME COMMUN. 3 (1) 97 [2023-09-18; online 2023-09-18]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Novel pathological variants of NHP2 affect N-terminal domain flexibility, protein stability, H/ACA Ribonucleoprotein (RNP) complex formation and telomerase activity.
Maliński B, Vertemara J, Faustini E, ..., Cammenga J, Lottersberger F
Hum. Mol. Genet. 32 (19) 2901-2912 [2023-09-16; online 2023-07-13]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Plasma type I collagen α1 chain in relation to coronary artery disease: findings from a prospective population-based cohort and an acute myocardial infarction prospective cohort in Sweden.
Hammaréus F, Nilsson L, Ong KL, ..., Holm Nielsen S, Jonasson L
BMJ Open 13 (9) e073561 [2023-09-15; online 2023-09-15]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Ki67 and prostate specific antigen are prognostic in metastatic hormone naïve prostate cancer.
Spyratou V, Freyhult E, Bergh A, ..., Welén K, Josefsson A
Acta Oncol - (-) 1-9 [2023-09-15; online 2023-09-15]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
In vivo gene expression profile of Haemophilus influenzae during human pneumonia.
Polland L, Rydén H, Su Y, Paulsson M
Microbiol Spectr 11 (5) e0163923 [2023-09-14; online 2023-09-14]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics [Service] Clinical Genomics Lund [Service]
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Genetic atlas of hygro-and thermosensory cells in the vinegar fly Drosophila melanogaster.
Corthals K, Andersson V, Churcher A, Reimegård J, Enjin A
Sci Rep 13 (1) 15202 [2023-09-14; online 2023-09-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Dissecting the genetic basis of drought responses in common bean using natural variation.
Labastida D, Ingvarsson PK, Rendón-Anaya M
Front Plant Sci 14 (-) 1143873 [2023-09-14; online 2023-09-14]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Identification of motif-based interactions between SARS-CoV-2 protein domains and human peptide ligands pinpoint antiviral targets.
Mihalič F, Benz C, Kassa E, ..., Jemth P, Ivarsson Y
Nat Commun 14 (1) 5636 [2023-09-13; online 2023-09-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cerebrospinal Fluid Metabolomics Identified Ongoing Analgesic Medication in Neuropathic Pain Patients.
Bäckryd E, Thordeman K, Gerdle B, Ghafouri B
Biomedicines 11 (9) - [2023-09-13; online 2023-09-13]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Sustained and intermittent hypoxia differentially modulate primary monocyte immunothrombotic responses to IL-1β stimulation.
Wahlund CJE, Çaglayan S, Czarnewski P, Hansen JB, Snir O
Front Immunol 14 (-) 1240597 [2023-09-11; online 2023-09-11]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Impact of estrogen on IgG glycosylation and serum protein glycosylation in a murine model of healthy postmenopause.
Gupta P, Sághy T, Nordqvist J, ..., Henning P, Engdahl C
Front Endocrinol (Lausanne) 14 (-) 1243942 [2023-09-11; online 2023-09-11]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Ectomycorrhizal fungi integrate nitrogen mobilisation and mineral weathering in boreal forest soil.
Mahmood S, Fahad Z, Bolou-Bi EB, ..., Ekblad A, Finlay RD
New Phytol. - (-) - [2023-09-11; online 2023-09-11]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A novel kleptoplastidic symbiosis revealed in the marine centrohelid Meringosphaera with evidence of genetic integration.
Sørensen MES, Zlatogursky VV, Onuţ-Brännström I, ..., Foster RA, Burki F
Curr. Biol. 33 (17) 3571-3584.e6 [2023-09-11; online 2023-08-02]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Pyrroloquinoline quinone drives ATP synthesis in vitro and in vivo and provides retinal ganglion cell neuroprotection.
Canovai A, Tribble JR, Jöe M, ..., Dal Monte M, Williams PA
Acta Neuropathol Commun 11 (1) 146 [2023-09-08; online 2023-09-08]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Estrogen receptor activation remodelsTEAD1gene expression to alleviate nonalcoholic fatty liver disease
Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C
- - (-) - [2023-09-08; online 2023-09-08]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
PLK1 as a cooperating partner for BCL2-mediated antiapoptotic program in leukemia.
Shah K, Nasimian A, Ahmed M, ..., Lock RB, Kazi JU
Blood Cancer J 13 (1) 139 [2023-09-07; online 2023-09-07]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Epigenetic modifications appear in the human placenta following anxiety and depression during pregnancy.
Martinez CA, Marteinsdottir I, Josefsson A, ..., Theodorsson E, Rodriguez-Martinez H
Placenta 140 (-) 72-79 [2023-09-07; online 2023-08-01]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
PubMed DOI Crossref
Transforming growth factor-β2 is associated with atherosclerotic plaque stability and lower risk for cardiovascular events.
Edsfeldt A, Singh P, Matthes F, ..., Sun J, Gonçalves I
Cardiovasc. Res. 119 (11) 2061-2073 [2023-09-05; online 2023-05-18]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Placental growth factor exerts a dual function for cardiomyogenesis and vasculogenesis during heart development.
Witman N, Zhou C, Häneke T, ..., Chien KR, Sahara M
Nat Commun 14 (1) 5435 [2023-09-05; online 2023-09-05]
Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Spatial multimodal analysis of transcriptomes and metabolomes in tissues.
Vicari M, Mirzazadeh R, Nilsson A, ..., Andrén PE, Lundeberg J
Nat. Biotechnol. - (-) - [2023-09-04; online 2023-09-04]
In Situ Sequencing (ISS) [Collaborative] Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Seasonal and age-related changes in sperm quality of farmed arctic charr (Salvelinus alpinus).
Kurta K, Jeuthe H, Naboulsi R, de Koning DJ, Palaiokostas C
BMC Genomics 24 (1) 519 [2023-09-04; online 2023-09-04]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Large-scale proximity extension assay reveals CSF midkine and DOPA decarboxylase as supportive diagnostic biomarkers for Parkinson's disease.
Paslawski W, Khosousi S, Hertz E, ..., Boxer A, Svenningsson P
Transl Neurodegener 12 (1) 42 [2023-09-04; online 2023-09-04]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
The interplay between dietary fatty acids and gut microbiota influences host metabolism and hepatic steatosis.
Schoeler M, Ellero-Simatos S, Birkner T, ..., Burcelin R, Caesar R
Nat Commun 14 (1) 5329 [2023-09-01; online 2023-09-01]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
The Genomic Basis of Adaptation to High Elevations in Africanized Honey Bees.
Everitt T, Wallberg A, Christmas MJ, ..., Neumann P, Webster MT
Genome Biol Evol 15 (9) - [2023-09-01; online 2023-08-26]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Stratified genetic analysis reveals sex differences in MPO-ANCA-associated vasculitis.
Ekman D, Sennblad B, Knight A, ..., Lindblad-Toh K, Dahlqvist J
Rheumatology (Oxford) 62 (9) 3213-3218 [2023-09-01; online 2023-04-03]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI SNP genotyping [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Pseudomonas ability to utilize different carbon substrates and adaptation influenced by protozoan grazing.
Ramasamy KP, Brugel S, Eriksson KIA, Andersson A
Environ. Res. 232 (-) 116419 [2023-09-01; online 2023-06-14]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Inhibiting metabotropic glutamate receptor 5 after stroke restores brain function and connectivity.
Hakon J, Quattromani MJ, Sjölund C, ..., Bauer AQ, Wieloch T
Brain - (-) - [2023-09-01; online 2023-09-01]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
IBS randomized study: FODMAPs alter bile acids, phenolic- and tryptophan metabolites, while gluten modifies lipids.
Nordin E, Hellström PM, Vuong E, ..., Brunius C, Landberg R
Am. J. Physiol. Regul. Integr. Comp. Physiol. 325 (3) R248-R259 [2023-09-01; online 2023-07-03]
Bioinformatics Support for Computational Resources [Service] Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Verticillium longisporum phospholipase VlsPLA2 is a virulence factor that targets host nuclei and modulates plant immunity.
Rafiei V, Vélëz H, Piombo E, Dubey M, Tzelepis G
Mol. Plant Pathol. 24 (9) 1078-1092 [2023-09-00; online 2023-05-12]
Global Proteomics and Proteogenomics [Service] Swedish Metabolomics Centre (SMC) [Service]
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Tuning of lattice thermal conductivity of amorphous Fe0.85Zr0.15 by nanostructured voids, pressure and temperature
Gürbüz E, Sanyal B
Journal of Non-Crystalline Solids 616 (-) 122430 [2023-09-00; online 2023-09-00]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium.
Shaw D, Abad R, Amin-Chowdhury Z, ..., Zhou F, Brueggemann AB
Lancet Digit Health 5 (9) e582-e593 [2023-09-00; online 2023-07-27]
Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]
PubMed DOI Crossref
Transcriptome network analysis links perinatal Staphylococcus epidermidis infection to microglia reprogramming in the immature hippocampus.
Gravina G, Ardalan M, Chumak T, ..., Ek CJ, Mallard C
Glia 71 (9) 2234-2249 [2023-09-00; online 2023-05-29]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service]
PubMed DOI Crossref
The role of NLRP3 in regulating gingival epithelial cell responses evoked by Aggregatibacter actinomycetemcomitans.
Jayaprakash Demirel K, Wu R, Neves Guimaraes A, Demirel I
Cytokine 169 (-) 156316 [2023-09-00; online 2023-08-02]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Structure and dynamics of the mitochondrial DNA-compaction factor Abf2 from S. cerevisiae.
Lidman J, Sallova Y, Matečko-Burmann I, Burmann BM
J. Struct. Biol. 215 (3) 108008 [2023-09-00; online 2023-08-03]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Quantification of chondroitin sulfate, hyaluronic acid and N-glycans in synovial fluid - A technical performance study.
Andersson E, Tykesson E, Lohmander LS, ..., Swärd P, Struglics A
Osteoarthr Cartil Open 5 (3) 100380 [2023-09-00; online 2023-06-10]
Glycoproteomics and MS Proteomics [Collaborative]
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Mosaic Loss of Chromosome Y Is Associated With Functional Outcome After Ischemic Stroke.
Dorvall M, Pedersen A, Dumanski JP, ..., Stanne TM, Jern C
Stroke 54 (9) 2434-2437 [2023-09-00; online 2023-07-19]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Milder Autumns May Increase Risk for Infection of Crops with Turnip Yellows Virus.
Puthanveed V, Singh K, Poimenopoulou E, ..., Siddique AB, Kvarnheden A
Phytopathology 113 (9) 1788-1798 [2023-09-00; online 2023-11-01]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Methane Producing and Oxidizing Microorganisms Display a High Resilience to Drought in a Swedish Hemi‐Boreal Mire
White JD, Ahrén D, Ström L, ..., Keane B, Parmentier FJW
JGR Biogeosciences 128 (9) - [2023-09-00; online 2023-09-08]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Increased plasma levels of soluble programmed death ligand 1 (sPD-L1) and fibroblast growth factor 23 (FGF-23) in patients with Graves' ophthalmopathy in comparison to hyperthyroid patients without Graves' ophthalmopathy.
Khamisi S, Anders Karlsson F, Ljunggren Ö, Thulin M, Larsson A
Cytokine 169 (-) 156269 [2023-09-00; online 2023-06-10]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Fine-tuning of p-coumaric acid synthesis to increase (2S)-naringenin production in yeast.
Mao J, Mohedano MT, Fu J, ..., Siewers V, Chen Y
Metab. Eng. 79 (-) 192-202 [2023-09-00; online 2023-08-22]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Contrasting genomic consequences of anthropogenic reintroduction and natural recolonization in high-arctic wild reindeer.
Burnett HA, Bieker VC, Le Moullec M, ..., Hansen BB, Martin MD
Evol Appl 16 (9) 1531-1548 [2023-09-00; online 2023-08-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chromatin accessibility, not 5mC methylation covaries with partial dosage compensation in crows.
Catalán A, Merondun J, Knief U, Wolf JBW
PLoS Genet. 19 (9) e1010901 [2023-09-00; online 2023-09-25]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Breast Milk Oligosaccharides Contain Immunomodulatory Glucuronic Acid and LacdiNAc.
Jin C, Lundstrøm J, Korhonen E, Luis AS, Bojar D
Mol. Cell Proteomics 22 (9) 100635 [2023-09-00; online 2023-08-18]
Glycoproteomics and MS Proteomics [Collaborative]
DOI Crossref
Antimicrobial susceptibilities and genomic epidemiology of Neisseria gonorrhoeae in Stockholm, Sweden
Vestberg N, Bhattarai KH, Fang H
Eur J Clin Microbiol Infect Dis 42 (9) 1073-1079 [2023-09-00; online 2023-07-13]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants.
Tran HC, Schmitt V, Lama S, ..., Delannoy E, Van Aken O
Science 381 (6661) eadg0995 [2023-09-00; online 2023-09-01]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A metabarcoding analysis of the wrackbed microbiome indicates a phylogeographic break along the North Sea-Baltic Sea transition zone.
Berdan EL, Roger F, Wellenreuther M, ..., Butlin RK, André C
Environ. Microbiol. 25 (9) 1659-1673 [2023-09-00; online 2023-04-09]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Trunk neural crest gene MOXD1 affects embryonic development
Fredlund E, Andersson S, Ferreira M, Mohlin S
- - (-) - [2023-08-31; online 2023-08-31]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
The Chlamydia effector CpoS modulates the inclusion microenvironment and restricts the interferon response by acting on Rab35.
Meier K, Jachmann LH, Türköz G, ..., Kroemer G, Sixt BS
MBio 14 (4) e0319022 [2023-08-31; online 2023-08-02]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
De novoassembled single-cell transcriptomes from aquatic phytoflagellates reveal a metabolically distinct cell population
Florenza J, Jeevannavar A, Divne AM, Tamminen M, Bertilsson S
- - (-) - [2023-08-31; online 2023-08-31]
Microbial Single Cell Genomics [Technology development]
PubMed DOI Crossref
Public and patient involvement: a survey on knowledge, experience and opinions among researchers within a precision oncology European project.
Mosconi P, Colombo C, Paletta P, ..., Brunelli C, CEE_DART Consortium
BMC Cancer 23 (1) 814 [2023-08-30; online 2023-08-30]
Global Proteomics and Proteogenomics [Technology development]
PubMed DOI Crossref
Apilactobacillus kunkeei releases RNA-associated membrane vesicles and proteinaceous nanoparticles.
Seeger C, Dyrhage K, Näslund K, Andersson SGE
Microlife 4 (-) uqad037 [2023-08-29; online 2023-08-29]
Cryo-EM [Service]
PubMed DOI Crossref
The yeast guanine nucleotide exchange factor Sec7 is a bottleneck in spatial protein quality control and detoxifies neurological disease proteins.
Babazadeh R, Schneider KL, Fischbach A, ..., Liu B, Nystrom T
Sci Rep 13 (1) 14068 [2023-08-28; online 2023-08-28]
Integrated Microscopy Technologies Gothenburg [Service]
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Kraft cooking of birch wood chips: differences between the dissolved organic material in pore and bulk liquor
Kron L, Marion de Godoy C, Hasani M, Theliander H
- 77 (8) 598-609 [2023-08-28; online 2023-07-07]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Deciphering the Role of p60AmotL2 in Epithelial Extrusion and Cell Detachment.
Cui W, Subramani A, Fonseca P, ..., Lundqvist A, Holmgren L
Cells 12 (17) - [2023-08-28; online 2023-08-28]
Global Proteomics and Proteogenomics [Service]
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Chemogenetic inhibition of IST1-CHMP1B interaction impairs endosomal recycling and promotes unconventional LC3 lipidation at stalled endosomes
Knyazeva A, Li S, Corkery DP, ..., Waldmann H, Wu YW
- - (-) - [2023-08-28; online 2023-08-28]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
O304 ameliorates hyperglycemia in mice by dually promoting muscle glucose effectiveness and preserving β-cell function.
Norlin S, Axelsson J, Ericsson M, Edlund H
Commun Biol 6 (1) 877 [2023-08-25; online 2023-08-25]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Long-read whole-genome analysis of human single cells.
Hård J, Mold JE, Eisfeldt J, ..., Michaëlsson J, Ameur A
Nat Commun 14 (1) 5164 [2023-08-24; online 2023-08-24]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Technology development] NGI Single cell [Technology development] NGI Stockholm (Genomics Applications) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Technology development] National Genomics Infrastructure [Technology development]
PubMed DOI Crossref
Highly multiplexed targeted sequencing strategy for infectious disease surveillance.
Hernández-Neuta I, Magoulopoulou A, Pineiro F, ..., Gulberg M, Nilsson M
BMC Biotechnol. 23 (1) 31 [2023-08-23; online 2023-08-23]
Bioinformatics (NBIS) [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Atomic-level structure determination of amorphous molecular solids by NMR.
Cordova M, Moutzouri P, Nilsson Lill SO, ..., Schantz S, Emsley L
Nat Commun 14 (1) 5138 [2023-08-23; online 2023-08-23]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Mass Transport in “Water-in-Polymer Salt” Electrolytes
Khan Z, Martinelli A, Franco LR, ..., Araujo CM, Crispin X
Chem. Mater. 35 (16) 6382-6395 [2023-08-22; online 2023-07-31]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Inhibition of high level E2F in a RB1 proficient MYCN overexpressing chicken retinoblastoma model normalizes neoplastic behaviour.
Zhang H, Konjusha D, Rafati N, Tararuk T, Hallböök F
Cell Oncol (Dordr) - (-) - [2023-08-22; online 2023-08-22]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Contrasting response of microeukaryotic and bacterial communities to the interplay of seasonality and local stressors in shallow soda lakes.
Márton Z, Csitári B, Felföldi T, ..., Szabó A, Székely AJ
FEMS Microbiol. Ecol. 99 (9) - [2023-08-22; online 2023-08-17]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Loss of CYP2D6 sensitizes hepatocellular carcinomas and neuroblastomas to talazoparib
Sjöblom T, Zhang X, Rameika N, ..., Heim M, Globisch D
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Insights into cellular behavior and micromolecular communication in urothelial micrografts.
Juul N, Willacy O, Mamand DR, ..., Chamorro CI, Fossum M
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Multiplexed Guide RNA Expression Leads to Increased Mutation Frequency in Targeted Window Using a CRISPR-Guided Error-Prone DNA Polymerase in Saccharomyces cerevisiae.
Gossing M, Limeta A, Skrekas C, ..., Siewers V, David F
ACS Synth Biol 12 (8) 2271-2277 [2023-08-18; online 2023-07-24]
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Mi J, Liu KC, Andersson O
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Fontaine L, Pin L, Savio D, ..., Farnleitner AH, Eiler A
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Nat Commun 14 (1) 5024 [2023-08-18; online 2023-08-18]
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Gianecini RA, Poklepovich T, Golparian D, ..., Campos J, Galarza P
Microbiol Spectr 11 (4) e0097023 [2023-08-17; online 2023-06-20]
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Neuron - (-) - [2023-08-15; online 2023-08-15]
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Integrating a Polygenic Risk Score into a clinical setting would impact risk predictions in familial breast cancer.
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Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
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GATA2 mitotic bookmarking is required for definitive haematopoiesis.
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Cell Rep 42 (8) 112972 [2023-08-13; online 2023-08-13]
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Dev. Cell - (-) - [2023-08-13; online 2023-08-13]
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Complementarity-determining region clustering may cause CAR-T cell dysfunction.
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Nat Commun 14 (1) 4732 [2023-08-10; online 2023-08-10]
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Front Plant Sci 14 (-) 1233838 [2023-08-09; online 2023-08-09]
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Graded expression of the chemokine receptor CX3CR1 marks differentiation states of human and murine T cells and enables cross-species interpretation.
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Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles.
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Comparison of plastid proteomes points towards a higher plastidial redox turnover in vascular tissues than in mesophyll cells.
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The development of blood protein profiles in extremely preterm infants follows a stereotypic evolution pattern.
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Relation between HLA and copy number variation of steroid 21-hydroxylase in a Swedish cohort of patients with autoimmune Addison's disease.
Lundtoft C, Eriksson D, Bianchi M, ..., Rönnblom L, Kämpe O
Eur. J. Endocrinol. 189 (2) 235-241 [2023-08-02; online 2023-08-09]
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Multiphoton characterization and live cell imaging using fluorescent adenine analogue 2CNqA.
Nilsson JR, Benitez-Martin C, Sansom HG, ..., Magennis SW, Wilhelmsson LM
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Genomic surveillance and antimicrobial resistance determinants in Neisseria gonorrhoeae isolates from Uganda, Malawi and South Africa, 2015-20.
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Tischlik S, Oelker M, Rogne P, ..., Drescher M, Wolf-Watz M
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Swedish NMR Centre (SNC) [Service]
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Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] Integrated Microscopy Technologies Gothenburg [Service]
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Surface decontamination of explanted peri-implantitis-affected implants.
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Solid-phase capture and profiling of open chromatin by spatial ATAC.
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Swedish NMR Centre (SNC) [Service]
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N-terminal proteoforms may engage in different protein complexes.
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Affinity Proteomics Uppsala [Service]
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Examining neurodevelopmental problems in 15q11.2 (BP1-BP2) copy number variation carriers at ages 9/12 and 18 in a Swedish twin sample.
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Mol Genet Genomic Med 11 (8) e2191 [2023-08-00; online 2023-05-08]
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Evaluation of genetic demultiplexing of single-cell sequencing data from model species.
Cardiello JF, Joven Araus A, Giatrellis S, ..., Simon A, Leigh ND
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Electrochimica Acta 458 (-) 142538 [2023-08-00; online 2023-08-00]
Integrated Microscopy Technologies Umeå [Service]
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Direct additive genetics and maternal effect contribute to the risk of Tourette disorder.
Mahjani B, Klei L, Buxbaum Grice AS, ..., Buxbaum JD, Grice DE
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Bioinformatics Support for Computational Resources [Service]
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Differential DNA Methylation of MicroRNA-Encoding Genes in Psoriatic Epidermis Highlights the Wnt Pathway.
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Characterisation of a low methane emission rice cultivar suitable for cultivation in high latitude light and temperature conditions.
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Environ Sci Pollut Res 30 (40) 92950-92962 [2023-08-00; online 2023-07-27]
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A genomic platform for surveillance and antigen discovery in Plasmodium spp. using long-read amplicon sequencing
Plaza DF, Zerebinski J, Broumou I, ..., Sundling C, Färnert A
Cell Reports Methods - (-) 100574 [2023-08-00; online 2023-08-00]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Observation of defect density dependent elastic modulus of graphene
Li H, Gürbüz E, Haldar S, ..., Sanyal B, Leifer K
- 123 (5) - [2023-07-31; online 2023-08-02]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Cell Membranes Sustain Phospholipid Imbalance Via Cholesterol Asymmetry
Doktorova M, Symons JL, Zhang X, ..., Levental KR, Levental I
- - (-) - [2023-07-31; online 2023-07-31]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Transposable element insertions in 1000 Swedish individuals.
Bilgrav Saether K, Nilsson D, Thonberg H, ..., Eisfeldt J, Lindstrand A
PLoS ONE 18 (7) e0289346 [2023-07-28; online 2023-07-28]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Register-based and genetic studies of Prader-Willi syndrome show a high frequency of gonadal tumors and a possible mechanism for tumorigenesis through imprinting relaxation.
Maya-González C, Wessman S, Lagerstedt-Robinson K, ..., Skarin Nordenvall A, Nordgren A
Front Med (Lausanne) 10 (-) 1172565 [2023-07-28; online 2023-07-28]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
scDual-Seq of Toxoplasma gondii-infected mouse BMDCs reveals heterogeneity and differential infection dynamics.
Hildebrandt F, Mohammed M, Dziedziech A, ..., Henriksson J, Ankarklev J
Front Immunol 14 (-) 1224591 [2023-07-27; online 2023-07-27]
Bioinformatics Support for Computational Resources [Service] Microbial Single Cell Genomics [Technology development] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
PVT1 interacts with polycomb repressive complex 2 to suppress genomic regions with pro-apoptotic and tumour suppressor functions in multiple myeloma.
Nylund P, Garrido-Zabala B, Párraga AA, ..., Kalushkova A, Wiklund HJ
Haematologica - (-) - [2023-07-27; online 2023-07-27]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Nucleobase catalysts for the enzymatic activation of 8-oxoguanine DNA glycosylase 1
Hank EC, D'Arcy-Evans N, Wallner O, ..., de Vega M, Michel M
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Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Spatial lipidomics reveals brain region-specific changes of sulfatides in an experimental MPTP Parkinson's disease primate model.
Kaya I, Nilsson A, Luptáková D, ..., Bezard E, Andrén PE
NPJ Parkinsons Dis 9 (1) 118 [2023-07-26; online 2023-07-26]
Spatial Mass Spectrometry [Technology development]
PubMed DOI Crossref
Cutaneous squamous cell carcinoma-derived extracellular vesicles exert an oncogenic role by activating cancer-associated fibroblasts.
Li C, Sun C, Lohcharoenkal W, ..., Sonkoly E, Pivarcsi A
Cell Death Discov 9 (1) 260 [2023-07-26; online 2023-07-26]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ciclopirox Ethanolamine Preserves the Immature State of Human HSCs by Mediating Intracellular Iron Content.
Safaee Talkhoncheh M, Baudet A, Ek F, ..., Will B, Larsson J
Blood Adv - (-) - [2023-07-24; online 2023-07-24]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
An Okinawan-Based Nordic Diet Leads to Profound Effects on Gut Microbiota and Plasma Metabolites Linked to Glucose and Lipid Metabolism.
Manoharan L, Roth B, Bang C, Stenlund H, Ohlsson B
Nutrients 15 (14) - [2023-07-24; online 2023-07-24]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] Swedish Metabolomics Centre (SMC) [Collaborative]
PubMed DOI Crossref
Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper.
Fridolfsson E, Bunse C, Lindehoff E, ..., Legrand C, Hylander S
Sci Rep 13 (1) 11865 [2023-07-22; online 2023-07-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Vegetation, topography, and soil depth drive microbial community structure in two Swedish grasslands.
Guasconi D, Juhanson J, Clemmensen KE, ..., Roth N, Fransson P
FEMS Microbiol. Ecol. 99 (8) - [2023-07-21; online 2023-07-21]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Transplantation of gut microbiota from old mice into young healthy mice reduces lean mass but not bone mass.
Lawenius L, Cowardin C, Grahnemo L, ..., Sjögren K, Ohlsson C
Gut Microbes 15 (1) 2236755 [2023-07-21; online 2023-07-21]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Thumb-domain dynamics modulate the functional repertoire of DNA-Polymerase IV (DinB).
Okeke DC, Lidman J, Matečko-Burmann I, Burmann BM
Nucleic Acids Res. 51 (13) 7036-7052 [2023-07-21; online 2023-06-01]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Survivin prevents the polycomb repressor complex 2 from methylating histone 3 lysine 27.
Jensen M, Chandrasekaran V, García-Bonete MJ, ..., Bokarewa I M, Katona G
iScience 26 (7) 106976 [2023-07-21; online 2023-05-29]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Proteomics identifies lipocalin-2 in neonatal inflammation associated with cerebrovascular alteration in mice and preterm infants.
Gravina G, Ardalan M, Chumak T, ..., Hellström A, Mallard C
iScience 26 (7) 107217 [2023-07-21; online 2023-06-27]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Iron age genomic data from Althiburos - Tunisia renew the debate on the origins of African taurine cattle.
Ginja C, Guimarães S, da Fonseca RR, ..., Pires AE, Valenzuela-Lamas S
iScience 26 (7) 107196 [2023-07-21; online 2023-06-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A machine learning based approach to identify carotid subclinical atherosclerosis endotypes.
Chen QS, Bergman O, Ziegler L, ..., Gigante B, IMPROVE study group
Cardiovasc. Res. - (-) - [2023-07-21; online 2023-07-21]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples.
Iwaszkiewicz-Eggebrecht E, Łukasik P, Buczek M, ..., Ronquist F, Miraldo A
PLoS ONE 18 (7) e0286272 [2023-07-19; online 2023-07-19]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Endophytic Beauveria bassiana induces biosynthesis of flavonoids in oilseed rape following both seed inoculation and natural colonization.
Muola A, Birge T, Helander M, ..., Saikkonen K, Fuchs B
Pest Manag Sci - (-) - [2023-07-19; online 2023-07-19]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature.
Lihavainen J, Šimura J, Bag P, ..., Ljung K, Jansson S
Nat Commun 14 (1) 4288 [2023-07-18; online 2023-07-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
ReprogrammingYarrowia lipolyticametabolism for efficient synthesis of itaconic acid from flask to semi-pilot scale
Fu J, Zaghen S, Lu H, ..., Di Bartolomeo F, Kerkhoven EJ
- - (-) - [2023-07-18; online 2023-07-18]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Phospholipid Removal for Enhanced Chemical Exposomics in Human Plasma
Sdougkou K, Xie H, Papazian S, ..., Bergdahl IA, Martin JW
Environ. Sci. Technol. 57 (28) 10173-10184 [2023-07-18; online 2023-07-03]
Exposomics [Technology development]
PubMed DOI Crossref
Next generation pan-cancer blood proteome profiling using proximity extension assay.
Álvez MB, Edfors F, von Feilitzen K, ..., Fagerberg L, Uhlén M
Nat Commun 14 (1) 4308 [2023-07-18; online 2023-07-18]
Affinity Proteomics Uppsala [Collaborative] Bioinformatics Support for Computational Resources [Service] NGI Proteomics [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Comparative transcriptome profiling provides insights into the growth promotion activity of Pseudomonas fluorescens strain SLU99 in tomato and potato plants.
Hanifah NASB, Ghadamgahi F, Ghosh S, ..., Vetukuri RR, Kalyandurg PB
Front Plant Sci 14 (-) 1141692 [2023-07-18; online 2023-07-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Serum proteome profiles in patients treated with targeted temperature management after out-of-hospital cardiac arrest.
Lileikyte G, Bakochi A, Ali A, ..., Malmström J, Nielsen N
Intensive Care Med Exp 11 (1) 43 [2023-07-17; online 2023-07-17]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Impact of xylan on field productivity and wood saccharification properties in aspen.
Derba-Maceluch M, Sivan P, Donev EN, ..., Jönsson LJ, Mellerowicz EJ
Front Plant Sci 14 (-) 1218302 [2023-07-17; online 2023-07-17]
Swedish Metabolomics Centre (SMC) [Service]
DOI Crossref
Biosensor-Assisted Laboratory Evolution of Malonyl-CoA production inSaccharomyces cerevisiae
Ferreira R, Hedin KA, Nielsen J, David F
- - (-) - [2023-07-17; online 2023-07-17]
Chalmers Mass Spectrometry Infrastructure [Service]
PubMed DOI Crossref
Restoring tumor immunogenicity with dendritic cell reprogramming.
Zimmermannova O, Ferreira AG, Ascic E, ..., Svane IM, Pereira CF
Sci Immunol 8 (85) eadd4817 [2023-07-14; online 2023-07-07]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Resolving the Pathogenesis of Anaplastic Wilms Tumors through Spatial Mapping of Cancer Cell Evolution.
Rastegar B, Andersson N, Petersson A, ..., Holmquist Mengelbier L, Gisselsson D
Clin. Cancer Res. 29 (14) 2668-2677 [2023-07-14; online 2023-05-04]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Absence of gut microbiota reduces neonatal survival and exacerbates liver disease in Cyp2c70-deficient mice with a human-like bile acid composition.
Sjöland W, Wahlström A, Makki K, ..., Bäckhed F, Marschall HU
Clin Sci (Lond) 137 (13) 995-1011 [2023-07-14; online 2023-06-29]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Irradiation and lithium treatment alter the global DNA methylation pattern and gene expression underlying a shift from gliogenesis towards neurogenesis in human neural progenitors.
Neofytou C, Backlund A, Blomgren K, Hermanson O
Transl Psychiatry 13 (1) 258 [2023-07-13; online 2023-07-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Quantitative Nanoscale Secondary Ion Mass Spectrometry (NanoSIMS) Imaging of Individual Vesicles to Investigate the Relation between Fraction of Chemical Release and Vesicle Size.
Nguyen TDK, Rabasco S, Lork AA, Toit AD, Ewing AG
Angew. Chem. Int. Ed. Engl. 62 (28) e202304098 [2023-07-10; online 2023-06-05]
Integrated Microscopy Technologies Gothenburg [Technology development]
DOI Crossref
Giant spin-splitting and tunable spin-momentum locked transport in room temperature collinear antiferromagnetic semimetallic CrO monolayer
Chen X, Wang D, Li L, Sanyal B
- 123 (2) - [2023-07-10; online 2023-07-11]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Autologous hematopoietic stem cell transplantation significantly alters circulating ceramides in peripheral blood of relapsing-remitting multiple sclerosis patients.
Vaivade A, Wiberg A, Khoonsari PE, ..., Burman J, Kultima K
Lipids Health Dis 22 (1) 97 [2023-07-07; online 2023-07-07]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
A new G-quadruplex-specific photosensitizer inducing genome instability in cancer cells by triggering oxidative DNA damage and impeding replication fork progression.
Deiana M, Andrés Castán JM, Josse P, ..., Cabanetos C, Sabouri N
Nucleic Acids Res. 51 (12) 6264-6285 [2023-07-07; online 2023-05-16]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
High-level in vitro resistance to gentamicin acquired in a stepwise manner in Neisseria gonorrhoeae.
Golparian D, Jacobsson S, Holley CL, Shafer WM, Unemo M
J. Antimicrob. Chemother. 78 (7) 1769-1778 [2023-07-05; online 2023-05-30]
Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]
PubMed DOI Crossref
Effects of FODMAPs and Gluten on Gut Microbiota and Their Association with the Metabolome in Irritable Bowel Syndrome: A Double-Blind, Randomized, Cross-Over Intervention Study.
Nordin E, Hellström PM, Dicksved J, ..., Landberg R, Brunius C
Nutrients 15 (13) - [2023-07-05; online 2023-07-05]
Bioinformatics Support for Computational Resources [Service] Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.
Potdar S, Ianevski F, Ianevski A, ..., Aittokallio T, Saarela J
Nucleic Acids Res. 51 (W1) W57-W61 [2023-07-05; online 2023-05-14]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
A chromosome-level genome assembly for the Rock Ptarmigan (Lagopus muta).
Squires TE, Rödin-Mörch P, Formenti G, ..., Höglund J, Magnússon KP
G3 (Bethesda) 13 (7) - [2023-07-05; online 2023-05-04]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Vascular endothelial growth factor-D plasma levels and VEGFD genetic variants are independently associated with outcomes in patients with cardiovascular disease.
Davidsson P, Eketjäll S, Eriksson N, ..., White H, Wallentin L
Cardiovasc. Res. 119 (7) 1596-1605 [2023-07-04; online 2023-03-05]
Affinity Proteomics Uppsala [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cardiomyocyte-specific PCSK9 deficiency compromises mitochondrial bioenergetics and heart function.
Laudette M, Lindbom M, Arif M, ..., Levin MC, Borén J
Cardiovasc. Res. 119 (7) 1537-1552 [2023-07-04; online 2023-03-08]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Bone mineral density loci specific to the skull portray potential pleiotropic effects on craniosynostosis.
Medina-Gomez C, Mullin BH, Chesi A, ..., Kague E, Rivadeneira F
Commun Biol 6 (1) 691 [2023-07-04; online 2023-07-04]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Physical Activity, Sedentary Behavior, and Type 2 Diabetes: Mendelian Randomization Analysis.
Yuan S, Li X, Liu Q, ..., Burgess S, Larsson SC
J Endocr Soc 7 (8) bvad090 [2023-07-03; online 2023-06-26]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Loss of ctnnd2b affects neuronal differentiation and behavior in zebrafish.
Vaz R, Edwards S, Dueñas-Rey A, Hofmeister W, Lindstrand A
Front. Neurosci. 17 (-) 1205653 [2023-07-03; online 2023-07-03]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Incidence and Characteristics in Children with Post-COVID-19 Condition in Sweden.
Bygdell M, Kindblom JM, Martikainen J, Li H, Nyberg F
JAMA Netw Open 6 (7) e2324246 [2023-07-03; online 2023-07-03]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
PubMed DOI Crossref
Domain landscapes of somatic NF1 mutations in pheochromocytoma and paraganglioma.
Tabebi M, Frikha F, Volpe M, Gimm O, Söderkvist P
Gene 872 (-) 147432 [2023-07-01; online 2023-04-14]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Arabinoxylan supplemented bread: From extraction of fibers to effect of baking, digestion, and fermentation.
Zhang D, Rudjito RC, Pietiäinen S, ..., Vilaplana F, Jiménez-Quero A
Food Chem 413 (-) 135660 [2023-07-01; online 2023-02-10]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Whole exome sequencing of FFPE samples-expanding the horizon of forensic molecular autopsies.
Adolfsson E, Kling D, Gunnarsson C, ..., Gréen H, Gréen A
Int J Legal Med 137 (4) 1215-1234 [2023-07-00; online 2022-11-08]
Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]
PubMed DOI Crossref
Urodrill - a novel MRI-guided endoscopic biopsy technique to sample and molecularly classify muscle-invasive bladder cancer without fractionating the specimen during transurethral resection.
Eriksson P, Berg J, Bernardo C, ..., Zackrisson S, Liedberg F
Eur Urol Open Sci 53 (-) 78-82 [2023-07-00; online 2023-06-02]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
The organization of double-stranded RNA in the chikungunya virus replication organelle.
Laurent T, Carlson L
PLoS Negl Trop Dis 17 (7) e0011404 [2023-07-00; online 2023-07-05]
Cryo-EM [Service]
DOI Crossref
The influence of the capping ligands on the optoelectronic performance, morphology, and ion liberation of CsPbBr3 perovskite quantum dots
Liu Y, Tang S, Gao Z, ..., Edman L, Wang J
Nano Res. 16 (7) 10626-10633 [2023-07-00; online 2023-04-19]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Role of the supports during phosphorus poisoning of diesel oxidation catalysts
Ho PH, Shao J, Yao D, ..., Creaser D, Olsson L
Chemical Engineering Journal 468 (-) 143548 [2023-07-00; online 2023-07-00]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Proteomic and transcriptomic screening demonstrates increased mast cell-derived CCL23 in systemic mastocytosis.
Söderlund S, Boey D, van Midden W, ..., Dahlin JS, Ungerstedt J
J. Allergy Clin. Immunol. 152 (1) 205-213 [2023-07-00; online 2023-02-21]
NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Plasma levels of per- and polyfluoroalkyl substances (PFAS) are associated with altered levels of proteins previously linked to inflammation, metabolism and cardiovascular disease.
Dunder L, Salihovic S, Lind PM, Elmståhl S, Lind L
Environ Int 177 (-) 107979 [2023-07-00; online 2023-05-24]
Affinity Proteomics Uppsala [Service]
DOI Crossref
N-Arylation of primary and tertiary sulfonimidamides (SIAs) with benzyne precursors under transition metal-free conditions
Ambala S, Govender KB, Rajbongshi KK, ..., Naicker T, Arvidsson PI
Tetrahedron Letters 124 (-) 154583 [2023-07-00; online 2023-07-00]
Drug Discovery and Development (DDD) [Technology development]
PubMed DOI Crossref
Multiplex protein analysis and ensemble machine learning methods of fine needle aspirates from prostate cancer patients reveal potential diagnostic signatures associated with tumour grade.
Röbeck P, Franzén B, Cantera-Ahlman R, ..., Häggman M, Ladjevardi S
Cytopathology 34 (4) 286-294 [2023-07-00; online 2023-03-20]
Affinity Proteomics Uppsala [Service]
PubMed DOI Crossref
Mucosal immune responses following a fourth SARS-CoV-2 vaccine dose.
Bladh O, Marking U, Havervall S, ..., Klingström J, Thålin C
Lancet Microbe 4 (7) e488 [2023-07-00; online 2023-04-20]
Affinity Proteomics Uppsala [Collaborative]
PubMed DOI Crossref
Metabolic profiles reflect weight loss maintenance and the composition of diet after very-low-energy diet.
Näätänen M, Kårlund A, Mikkonen S, ..., Hanhineva K, Kolehmainen M
Clin Nutr 42 (7) 1126-1141 [2023-07-00; online 2023-05-17]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Individualised human phenotype ontology gene panels improve clinical whole exome and genome sequencing analytical efficacy in a cohort of developmental and epileptic encephalopathies.
Henry OJ, Stödberg T, Båtelson S, ..., Stranneheim H, Wedell A
Mol Genet Genomic Med 11 (7) e2167 [2023-07-00; online 2023-03-26]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Immunological protein profiling of first-episode psychosis patients identifies CSF and blood biomarkers correlating with disease severity.
Eren F, Schwieler L, Orhan F, ..., Engberg G, Erhardt S
Brain, Behavior, and Immunity 111 (-) 376-385 [2023-07-00; online 2023-05-04]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Human resident liver myeloid cells protect against metabolic stress in obesity.
Barreby E, Strunz B, Nock S, ..., Chen P, Aouadi M
Nat Metab 5 (7) 1188-1203 [2023-07-00; online 2023-07-06]
Spatial Proteomics [Service]
DOI Crossref
High temperature interactions between K-rich biomass ash and MgO-based refractories
Wagri NK, Carlborg M, Eriksson M, ..., Broström M, Andersson BM
Journal of the European Ceramic Society 43 (8) 3770-3777 [2023-07-00; online 2023-07-00]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Forest Fire Influence on Tomicus piniperda-Associated Fungal Communities and Phloem Nutrient Availability of Colonized Pinus sylvestris.
Kluting K, Strid Y, Six D, Rosling A
Microb. Ecol. 86 (1) 224-239 [2023-07-00; online 2022-07-13]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Forensic prediction of sex, age, height, body mass index, hip-to-waist ratio, smoking status and lipid lowering drugs using epigenetic markers and plasma proteins.
Llobet MO, Johansson Å, Gyllensten U, Allen M, Enroth S
Forensic Sci Int Genet 65 (-) 102871 [2023-07-00; online 2023-04-07]
Bioinformatics Support for Computational Resources [Service] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Expanding the phenotype of Seckel syndrome associated with biallelic loss-of-function variants in CEP63.
Pekkola Pacheco N, Pettersson M, Lindstrand A, Grigelioniene G
Am. J. Med. Genet. A 191 (7) 1929-1934 [2023-07-00; online 2023-04-05]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Esr1+ hypothalamic-habenula neurons shape aversive states.
Calvigioni D, Fuzik J, Le Merre P, ..., Carlén M, Meletis K
Nat. Neurosci. 26 (7) 1245-1255 [2023-07-00; online 2023-06-22]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Environmental stress during larval development induces DNA methylation shifts in the migratory painted lady butterfly (Vanessa cardui).
Boman J, Zhu Y, Höök L, ..., Talavera G, Backström N
Mol. Ecol. 32 (13) 3513-3523 [2023-07-00; online 2023-04-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Core genome multilocus sequence typing (cgMLST) confirms systemic spread of avian pathogenic Escherichia coli (APEC) in broilers with cellulitis.
Jonare L, Östlund E, Söderlund R, ..., Aspán A, Jansson DS
Vet. Microbiol. 282 (-) 109755 [2023-07-00; online 2023-04-24]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Complex life cycles drive community assembly through immigration and adaptive diversification.
Saltini M, Vasconcelos P, Rueffler C
Ecol. Lett. 26 (7) 1084-1094 [2023-07-00; online 2023-05-01]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Actionable cancer vulnerability due to translational arrest, p53 aggregation and ribosome biogenesis stress evoked by the disulfiram metabolite CuET.
Kanellis DC, Zisi A, Skrott Z, ..., Lindström MS, Bartek J
Cell Death Differ. 30 (7) 1666-1678 [2023-07-00; online 2023-05-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A phase I prospective, non-randomized trial of autologous dendritic cell-based cryoimmunotherapy in patients with metastatic castration-resistant prostate cancer.
Thomsen LCV, Honoré A, Reisæter LAR, ..., Kalland KH, Beisland C
Cancer Immunol. Immunother. 72 (7) 2357-2373 [2023-07-00; online 2023-03-20]
Clinical Genomics [Service] Clinical Genomics Uppsala [Service]
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A model of photosynthetic CO2 assimilation in C3 leaves accounting for respiration and energy recycling by the plastidial oxidative pentose phosphate pathway.
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Food Chem 412 (-) 135585 [2023-06-30; online 2023-01-27]
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Sallam M, Wilson PW, Andersson B, ..., De Koning DJ, Johnsson M
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J. Agric. Food Chem. 71 (25) 9826-9835 [2023-06-28; online 2023-06-13]
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MBio 14 (3) e0044923 [2023-06-27; online 2023-04-25]
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PLoS ONE 18 (6) e0287586 [2023-06-26; online 2023-06-26]
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Cancers (Basel) 15 (13) - [2023-06-26; online 2023-06-26]
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Sci Rep 13 (1) 9043 [2023-06-03; online 2023-06-03]
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NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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DNA Res. 30 (3) - [2023-06-01; online 2023-05-04]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Plant Physiol Biochem 199 (-) 107713 [2023-06-00; online 2023-04-24]
Swedish Metabolomics Centre (SMC) [Service]
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Evol Appl 16 (6) 1201-1219 [2023-06-00; online 2023-06-06]
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PLoS Genet. 19 (6) e1010801 [2023-06-00; online 2023-06-30]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Acta Oncol 62 (6) 560-564 [2023-06-00; online 2023-07-06]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
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Retention of essential fatty acids in fish differs by species, habitat use and nutritional quality of prey.
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Ecol Evol 13 (6) e10158 [2023-06-00; online 2023-06-01]
Swedish Metabolomics Centre (SMC) [Service]
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Proteomic analysis reveals microvesicles containing NAMPT as mediators of radioresistance in glioma.
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Pathogenic antibody response to glucose-6-phosphate isomerase targets a modified epitope uniquely exposed on joint cartilage.
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Northwest African Neolithic initiated by migrants from Iberia and Levant.
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Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag.
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Integrated Microscopy Technologies Umeå [Service]
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Genome-wide association study and functional characterization identifies candidate genes for insulin-stimulated glucose uptake.
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Diagnostic Yield From a Nationwide Implementation of Precision Medicine for all Children With Cancer.
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Brain Connect 13 (5) 297-306 [2023-06-00; online 2022-10-07]
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Contrasting plant-soil-microbial feedbacks stabilize vegetation types and uncouple topsoil C and N stocks across a subarctic-alpine landscape.
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New Phytol. 238 (6) 2621-2633 [2023-06-00; online 2022-12-29]
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Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities.
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Journal of CO2 Utilization 72 (-) 102512 [2023-06-00; online 2023-06-00]
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Atlas of mRNA translation and decay for bacteria.
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AdipoR2 recruits protein interactors to promote fatty acid elongation and membrane fluidity.
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Accurate structure models and absolute configuration determination using dynamical effects in continuous-rotation 3D electron diffraction data.
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PubMed DOI Crossref
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Raj D, Kraish B, Martikainen J, ..., Kao G, Naredi P
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Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
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Disulfide-Bond-Induced Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.
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Swedish NMR Centre (SNC) [Service]
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Structural, vibrational, elastic, electronic, and piezoelectric properties of binary <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML">γ<mml:mtext>−</mml:mtext><mml:mrow>GeX</mml:mrow></mml:math> and ternary <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML">γ<mml:mtext>−</mml:mtext><mml:mrow><mml:msub>Ge2</mml:msub>X<mml:msup>X′</mml:msup></mml:mrow></mml:math> monolayers ( <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML">X</mml:math> , <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:msup>X′</mml:msup>=<mml:mi mathvariant="normal">S</mml:math> , Se, and Te)
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Swedish NMR Centre (SNC) [Service]
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NGI Short read [Service] NGI Spatial omics NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Affinity Proteomics Stockholm [Collaborative]
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Integrated Microscopy Technologies Stockholm [Technology development]
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Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Swedish NMR Centre (SNC) [Technology development]
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Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Parasit Vectors 16 (1) 156 [2023-05-01; online 2023-05-01]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative] Bioinformatics Support for Computational Resources [Service] In Situ Sequencing (ISS) [Collaborative] NGI Short read [Service] NGI Spatial omics [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Melanocortin-4 receptors on neurons in the parabrachial nucleus mediate inflammation-induced suppression of food-seeking behavior.
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Brain, Behavior, and Immunity 110 (-) 80-84 [2023-05-00; online 2023-02-20]
Integrated Microscopy Technologies Gothenburg [Service]
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Pendsey S, James S, Garrett TJ, ..., Forsander G, Ogle GD
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Swedish NMR Centre (SNC) [Collaborative]
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Inhibition of VEGF-B signaling prevents non-alcoholic fatty liver disease development by targeting lipolysis in the white adipose tissue.
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Swedish Metabolomics Centre (SMC) [Service]
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Functional genome annotation and transcriptome analysis of Pseudozyma hubeiensis BOT-O, an oleaginous yeast that utilizes glucose and xylose at equal rates.
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Flexible Organic Electronic Ion Pump for Flow-Free Phytohormone Delivery into Vasculature of Intact Plants.
Bernacka-Wojcik I, Talide L, Abdel Aziz I, ..., Niittylä T, Stavrinidou E
Adv Sci (Weinh) 10 (14) e2206409 [2023-05-00; online 2023-03-19]
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Extracellular Vesicle-Associated TWEAK Contributes to Vascular Inflammation and Remodeling During Acute Cellular Rejection.
Celik S, Sadrian J, Grossi M, ..., Smith JG, Gidlöf O
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Faticov M, Abdelfattah A, Hambäck P, Roslin T, Tack AJM
Ecol Evol 13 (5) e10065 [2023-05-00; online 2023-05-21]
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Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
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Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Wilder AP, Supple MA, Subramanian A, ..., Ryder OA, Shapiro B
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Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Kaplow IM, Lawler AJ, Schäffer DE, ..., Meyer WK, Pfenning AR
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ACS Sens. 8 (4) 1500-1509 [2023-04-28; online 2023-03-22]
Integrated Microscopy Technologies Gothenburg [Service]
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Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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J Neuroinflammation 20 (1) 98 [2023-04-27; online 2023-04-27]
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Konturek-Ciesla A, Dhapola P, Zhang Q, ..., Karlsson G, Bryder D
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Clinical Genomics [Service] Clinical Genomics Lund [Service]
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Sci Rep 13 (1) 6777 [2023-04-25; online 2023-04-25]
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Torinsson Naluai Å, Östensson M, Fowler PC, ..., Harandi AM, Bende M
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Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Microb. Cell Fact. 22 (1) 74 [2023-04-20; online 2023-04-20]
Chalmers Mass Spectrometry Infrastructure [Service]
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Grahnemo L, Nethander M, Coward E, ..., Hveem K, Ohlsson C
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Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
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Clinical Genomics [Technology development] Clinical Genomics Örebro [Technology development]
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Cancer Cell Int 23 (1) 77 [2023-04-18; online 2023-04-18]
Integrated Microscopy Technologies Gothenburg [Service]
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Affinity Proteomics Uppsala [Service] Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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BMC Genomics 24 (1) 205 [2023-04-17; online 2023-04-17]
Bioinformatics Support for Computational Resources [Service]
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Hydrogen production by a fully de novo enzyme
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Spatial Mass Spectrometry [Collaborative]
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Oxf Open Immunol 4 (1) iqad003 [2023-04-17; online 2023-04-17]
Affinity Proteomics Stockholm [Service] Bioinformatics Support for Computational Resources [Service] Cellular Immunomonitoring [Technology development]
PubMed DOI Crossref
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Yu M, Charles A, Cagigi A, ..., Loré K, Smed-Sörensen A
Nat Commun 14 (1) 2164 [2023-04-15; online 2023-04-15]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
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Swedish NMR Centre (SNC) [Collaborative]
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Chalmers Mass Spectrometry Infrastructure [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A glycan epitope correlates with tau in serum and predicts progression to Alzheimer's disease in combination with APOE4 allele status.
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Alzheimers Dement - (-) - [2023-04-12; online 2023-04-12]
Affinity Proteomics Stockholm [Collaborative]
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Blood Adv 7 (7) 1204-1218 [2023-04-11; online 2022-11-17]
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Subclass-switched anti-spike IgG3 oligoclonal cocktails strongly enhance Fc-mediated opsonization.
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Drug Discovery and Development (DDD) [Service]
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Sci Signal 16 (780) eabq0752 [2023-04-11; online 2023-04-11]
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Nat Commun 14 (1) - [2023-04-10; online 2023-04-10]
Integrated Microscopy Technologies Umeå [Service]
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The exosome degrades chromatin-associated RNAs genome-wide and maintains chromatin homeostasis
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Bioinformatics Support for Computational Resources [Service]
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Chachaj A, Dudka I, Jeziorek M, ..., Adaszyńska A, Szuba A
Front Physiol 14 (-) 1099555 [2023-04-10; online 2023-04-10]
Swedish NMR Centre (SNC) [Collaborative]
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Gallego P, Garcia-Bonete MJ, Trillo-Muyo S, ..., Johansson MEV, Hansson GC
Nat Commun 14 (1) 1969 [2023-04-08; online 2023-04-08]
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Microorganisms 11 (4) - [2023-04-08; online 2023-04-08]
NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Chalmers Mass Spectrometry Infrastructure [Collaborative]
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Cedeno M, Murillo-Saich J, Coras R, ..., Martinez-Morillo M, Guma M
Metabolomics 19 (4) 37 [2023-04-06; online 2023-04-06]
Swedish NMR Centre (SNC) [Collaborative]
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Maitusong B, Laguzzi F, Strawbridge RJ, ..., Leander K, IMPROVE Study group†
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Magoulopoulou A, Salas SM, Tiklová K, ..., Hilscher MM, Nilsson M
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In Situ Sequencing (ISS) [Collaborative]
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Wee JLQ, Murugesan SN, Wheat CW, Monteiro A
BMC Genomics 24 (1) 169 [2023-04-04; online 2023-04-04]
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Volpe M, Das J
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Clinical Genomics [Technology development] Clinical Genomics Linköping [Technology development]
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Red clover root-associated microbiota is shaped by geographic location and choice of farming system.
Jambagi S, Hodén KP, Öhlund L, Dixelius C
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Immune-interacting lymphatic endothelial subtype at capillary terminals drives lymphatic malformation.
Petkova M, Kraft M, Stritt S, ..., Betsholtz C, Mäkinen T
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Integrated Microscopy Technologies Stockholm [Service]
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Nat Commun 14 (1) 1833 [2023-04-01; online 2023-04-01]
Glycoproteomics and MS Proteomics [Collaborative]
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Hasselbalch RB, Kristensen JH, Strandkjær N, ..., Malmendal A, Iversen KK
Metabolomics 19 (4) 33 [2023-04-01; online 2023-04-01]
Swedish NMR Centre (SNC) [Service]
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Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls.
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New Phytol. 238 (1) 297-312 [2023-04-00; online 2023-01-31]
Swedish NMR Centre (SNC) [Collaborative]
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Pappas F, Kurta K, Vanhala T, ..., Beirão J, Palaiokostas C
Evol Appl 16 (4) 797-813 [2023-04-00; online 2023-02-27]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Hensvold A, Horuluoglu B, Sahlström P, ..., Malmström V, Grönwall C
J. Autoimmun. 136 (-) 103022 [2023-04-00; online 2023-03-29]
NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Soil Biology and Biochemistry 179 (-) 108994 [2023-04-00; online 2023-04-00]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Lung macrophages utilize unique cathepsin K-dependent phagosomal machinery to degrade intracellular collagen.
Fabrik I, Bilkei-Gorzo O, Öberg M, ..., Göransson M, Härtlova A
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Interleukin-6 trans-signaling induced laminin switch contributes to reduced trans-endothelial migration of granulocytic cells.
Zegeye MM, Matic L, Lengquist M, ..., Ljungberg LU, Kumawat AK
Atherosclerosis 371 (-) 41-53 [2023-04-00; online 2023-03-22]
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Imputed genomes and haplotype-based analyses of the Picts of early medieval Scotland reveal fine-scale relatedness between Iron Age, early medieval and the modern people of the UK.
Morez A, Britton K, Noble G, ..., Donald C, Girdland-Flink L
PLoS Genet. 19 (4) e1010360 [2023-04-00; online 2023-04-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Immune-related microRNAs in breast milk and their relation to regulatory T cells in breastfed children.
Ahlberg E, Martí M, Govindaraj D, ..., Jenmalm MC, Tingö L
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Ojalehto E, Zhan Y, Jylhävä J, ..., Dahl Aslan AK, Karlsson IK
EClinicalMedicine 58 (-) 101943 [2023-04-00; online 2023-04-06]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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From high masked to high realized genetic load in inbred Scandinavian wolves.
Smeds L, Ellegren H
Mol. Ecol. 32 (7) 1567-1580 [2023-04-00; online 2022-12-13]
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Formate overflow drives toxic folate trapping in MTHFD1 inhibited cancer cells.
Green AC, Marttila P, Kiweler N, ..., Henriksson M, Meiser J
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Boström AED, Jamshidi E, Manu DM, ..., Åsberg M, Jokinen J
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Cellulose 30 (6) 3685-3698 [2023-04-00; online 2023-02-28]
Swedish NMR Centre (SNC) [Service]
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Cardiac Plin5 interacts with SERCA2 and promotes calcium handling and cardiomyocyte contractility.
Cinato M, Mardani I, Miljanovic A, ..., Borén J, Levin MC
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Glycoproteomics and MS Proteomics [Service]
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A Room-Temperature Spin-Valve with van der Waals Ferromagnet Fe5 GeTe2 /Graphene Heterostructure.
Zhao B, Ngaloy R, Ghosh S, ..., Sanyal B, Dash SP
Adv Mater 35 (16) e2209113 [2023-04-00; online 2023-03-08]
Bioinformatics Support for Computational Resources [Service]
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Distinct cervical tissue-adherent and luminal microbiome communities correlate with mucosal host gene expression and protein levels in Kenyan sex workers.
Edfeldt G, Kaldhusdal V, Czarnewski P, ..., Kwon DS, Broliden K
Microbiome 11 (1) 67 [2023-03-31; online 2023-03-31]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Vono M, Mastelic-Gavillet B, Mohr E, ..., Lambert P, Siegrist C
Front Immunol 14 (-) 1155200 [2023-03-31; online 2023-03-31]
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Lindberg FA, Nordenankar K, Forsberg EC, Fredriksson R
Genes 14 (4) - [2023-03-30; online 2023-03-30]
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Zhang J, Abdollahi M, Ström A, Undeland I
Food Chem X 17 (-) 100592 [2023-03-30; online 2023-02-04]
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Rönnberg E, Ravindran A, Mazzurana L, ..., Mjösberg J, Nilsson G
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Novel Insights into the Molecular Mechanisms Underlying Robustness and Stability in Probiotic Bifidobacteria.
Schöpping M, Goel A, Jensen K, ..., Franzén CJ, Zeidan AA
Appl. Environ. Microbiol. 89 (3) e0008223 [2023-03-29; online 2023-02-21]
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Seidel L, Sachpazidou V, Ketzer M, ..., Forsman A, Dopson M
Front Microbiol 14 (-) 1099445 [2023-03-29; online 2023-03-29]
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Swedish NMR Centre (SNC) [Service]
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Pathogens 12 (4) - [2023-03-27; online 2023-03-27]
Affinity Proteomics Uppsala [Service]
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Preselection of QTL markers enhances accuracy of genomic selection in Norway spruce.
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BMC Genomics 24 (1) 147 [2023-03-27; online 2023-03-27]
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Rodríguez-Gijón A, Buck M, Andersson AF, ..., Nascimento FJA, Garcia SL
ISME COMMUN. 3 (1) 25 [2023-03-27; online 2023-03-27]
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Swedish NMR Centre (SNC) [Service]
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Unnersjö-Jess D, Butt L, Höhne M, ..., Bozek K, Benzing T
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Dev. Cell 58 (6) 450-460.e6 [2023-03-27; online 2023-03-08]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Simultaneous Ultra-Sensitive Detection of Structural and Single Nucleotide Variants Using Multiplex Droplet Digital PCR in Liquid Biopsies from Children with Medulloblastoma.
Arthur C, Jylhä C, de Ståhl TD, ..., Sandvik U, Tham E
Cancers (Basel) 15 (7) - [2023-03-25; online 2023-03-25]
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Woodward EL, Yang M, Moura-Castro LH, ..., Foijer F, Paulsson K
Nat Commun 14 (1) 1658 [2023-03-25; online 2023-03-25]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
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Piombo E, Kelbessa BG, Sundararajan P, ..., Vetukuri RR, Dubey M
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Trac QT, Pawitan Y, Mou T, ..., Kallioniemi O, Vu TN
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Intranasal trimeric sherpabody inhibits SARS-CoV-2 including recent immunoevasive Omicron subvariants.
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New Dual Inhibitors of Bacterial Topoisomerases with Broad-Spectrum Antibacterial Activity and In Vivo Efficacy against Vancomycin-Intermediate Staphylococcus aureus.
Durcik M, Cotman AE, Toplak Ž, ..., Tomašič T, Peterlin Mašič L
J. Med. Chem. 66 (6) 3968-3994 [2023-03-23; online 2023-03-06]
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Neutralizing Carbapenem Resistance by Co-Administering Meropenem with Novel β-Lactam-Metallo-β-Lactamase Inhibitors.
Reddy N, Girdhari L, Shungube M, ..., Govender T, Naicker T
Antibiotics (Basel) 12 (4) - [2023-03-23; online 2023-03-23]
Drug Discovery and Development (DDD) [Collaborative]
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Exposure to nonanoic acid alters small intestinal neuroendocrine tumor phenotype.
Almobarak B, Amlani V, Inge L, ..., Arvidsson Y, Elias E
BMC Cancer 23 (1) 267 [2023-03-23; online 2023-03-23]
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Sci Adv 9 (12) eabq3713 [2023-03-22; online 2023-03-22]
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Correlates of protection and viral load trajectories in omicron breakthrough infections in triple vaccinated healthcare workers.
Marking U, Havervall S, Norin NG, ..., Klingström J, Thålin C
Nat Commun 14 (1) 1577 [2023-03-22; online 2023-03-22]
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Gunnarsdottir FB, Bendahl PO, Johansson A, ..., Bergenfelz C, Larsson AM
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Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Erickson A, Motta A, Kastriti ME, ..., Bonanomi D, Adameyko I
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Integrated Microscopy Technologies Stockholm [Collaborative]
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Complete Reference Genome Sequence of the Clinical Neisseria gonorrhoeae Strain H035, with Resistance to the Novel Antimicrobial Zoliflodacin, Identified in Japan in 2000.
Golparian D, Jacobsson S, Ohnishi M, Unemo M
Microbiol Resour Announc 12 (3) e0113022 [2023-03-16; online 2023-02-28]
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Rapid and accurate determination of protein content in North Atlantic seaweed by NIR and FTIR spectroscopies.
Niemi C, Mortensen AM, Rautenberger R, ..., Gorzsás A, Gentili FG
Food Chem 404 (Pt B) 134700 [2023-03-15; online 2022-10-19]
Swedish Metabolomics Centre (SMC) [Service]
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Autoantibodies against PIP4K2B and AKT3 Are Associated with Skin and Lung Fibrosis in Patients with Systemic Sclerosis.
Geroldinger-Simić M, Bayati S, Pohjanen E, ..., Nilsson P, Pin E
Int J Mol Sci 24 (6) - [2023-03-15; online 2023-03-15]
Autoimmunity and Serology Profiling [Collaborative]
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An integrated single cell and spatial transcriptomic map of human white adipose tissue.
Massier L, Jalkanen J, Elmastas M, ..., Rydén M, Mejhert N
Nat Commun 14 (1) 1438 [2023-03-15; online 2023-03-15]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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A proinsulin-dependent interaction between ENPL-1 and ASNA-1 in neurons is required to maintain insulin secretion in C. elegans.
Podraza-Farhanieh A, Raj D, Kao G, Naredi P
Development 150 (6) - [2023-03-15; online 2023-03-20]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
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Tetramodal Chemical Imaging Delineates the Lipid-Amyloid Peptide Interplay at Single Plaques in Transgenic Alzheimer's Disease Models.
Ge J, Koutarapu S, Jha D, ..., Blennow K, Hanrieder J
Anal. Chem. 95 (10) 4692-4702 [2023-03-14; online 2023-03-01]
Integrated Microscopy Technologies Gothenburg [Service]
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A MITE insertion abolishes the AP3-3 self-maintenance regulatory loop in apetalous flowers of Nigella damascena.
Conde E Silva N, Leguilloux M, Bellec A, ..., Berges H, Deveaux Y
J. Exp. Bot. 74 (5) 1448-1459 [2023-03-13; online 2022-12-14]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization.
Amselem E, Broadwater B, Hävermark T, Johansson M, Elf J
Nat Commun 14 (1) 1336 [2023-03-11; online 2023-03-11]
Bioinformatics Support for Computational Resources [Service]
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Proteome integral solubility alteration high-throughput proteomics assay identifies Collectin-12 as a non-apoptotic microglial caspase-3 substrate.
Grabert K, Engskog-Vlachos P, Škandík M, ..., Joseph B, Cheray M
Cell Death Dis 14 (3) 192 [2023-03-11; online 2023-03-11]
Chemical Proteomics [Collaborative]
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In Vitro and In Vivo Development of a β-Lactam-Metallo-β-Lactamase Inhibitor: Targeting Carbapenem-Resistant Enterobacterales.
Peters BK, Reddy N, Shungube M, ..., Naicker T, Govender T
ACS Infect Dis 9 (3) 486-496 [2023-03-10; online 2023-02-14]
Drug Discovery and Development (DDD) [Collaborative]
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Enhanced glycerol assimilation and lipid production in Rhodotorula toruloides CBS14 upon addition of hemicellulose primarily correlates with early transcription of energy-metabolism-related genes.
Martín-Hernández GC, Chmielarz M, Müller B, ..., Hölzer M, Passoth V
Biotechnol Biofuels Bioprod 16 (1) 42 [2023-03-10; online 2023-03-10]
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One Health surveillance-A cross-sectoral detection, characterization, and notification of foodborne pathogens.
Tast Lahti E, Karamehmedovic N, Riedel H, ..., Zajac M, Jernberg C
Front Public Health 11 (-) 1129083 [2023-03-08; online 2023-03-08]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
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Melatonin Prescription in Children and Adolescents in Relation to Body Weight and Age.
Kimland EE, Dahlén E, Martikainen J, Célind J, Kindblom JM
Pharmaceuticals (Basel) 16 (3) - [2023-03-06; online 2023-03-06]
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Identification of phenotypically, functionally, and anatomically distinct stromal niche populations in human bone marrow based on single-cell RNA sequencing.
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Elife 12 (-) - [2023-03-06; online 2023-03-06]
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Venetoclax-Resistant T-ALL Cells Display Distinct Cancer Stem Cell Signatures and Enrichment of Cytokine Signaling.
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Int J Mol Sci 24 (5) - [2023-03-05; online 2023-03-05]
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miRNome and Proteome Profiling of Human Keratinocytes and Adipose Derived Stem Cells Proposed miRNA-Mediated Regulations of Epidermal Growth Factor and Interleukin 1-Alpha.
Shahin H, Abdallah S, Das J, ..., Elmasry M, El-Serafi AT
Int J Mol Sci 24 (5) - [2023-03-04; online 2023-03-04]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
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Yao Z, Guo Y, Wang H, ..., Nielsen J, Dai Z
Biotechnol Biofuels Bioprod 16 (1) 37 [2023-03-04; online 2023-03-04]
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Short term starvation potentiates the efficacy of chemotherapy in triple negative breast cancer via metabolic reprogramming.
Pateras IS, Williams C, Gianniou DD, ..., Gilthorpe JD, Frisan T
J Transl Med 21 (1) 169 [2023-03-03; online 2023-03-03]
Swedish Metabolomics Centre (SMC) [Service]
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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.
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Commun Biol 6 (1) 240 [2023-03-03; online 2023-03-03]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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ARF suppression by MYC but not MYCN confers increased malignancy of aggressive pediatric brain tumors.
Mainwaring OJ, Weishaupt H, Zhao M, ..., Hutter S, Swartling FJ
Nat Commun 14 (1) 1221 [2023-03-03; online 2023-03-03]
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Onuț-Brännström I, Stairs CW, Campos KIA, ..., Bass D, Burki F
Genome Biol Evol 15 (3) - [2023-03-03; online 2023-02-16]
Bioinformatics Support for Computational Resources [Service]
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Genome-wide analysis identifies genetic effects on reproductive success and ongoing natural selection at the FADS locus.
Mathieson I, Day FR, Barban N, ..., Mills MC, Perry JRB
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Pushparaj P, Nicoletto A, Dopico XC, ..., Corcoran M, Karlsson Hedestam GB
Front Virol 3 (-) 1128253 [2023-03-01; online 2023-04-13]
Structural Proteomics [Collaborative]
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Clonal relationships of memory B cell subsets in autoimmune mice.
Aranburu A, Engström E, Gerasimcik N, ..., Grimsholm O, Mårtensson IL
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Noborn F, Thomsen C, Vorontsov E, ..., Oldfors A, Larson G
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Structural basis of mitochondrial membrane bending by the I-II-III2-IV2 supercomplex.
Mühleip A, Flygaard RK, Baradaran R, ..., Sharma V, Amunts A
Nature 615 (7954) 934-938 [2023-03-00; online 2023-03-22]
Cryo-EM [Service]
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Striking membrane defects in AdipoR-deficient cells.
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Integrated Microscopy Technologies Gothenburg [Service]
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Rapid adaptations of Legionella pneumophila to the human host.
Leenheer D, Moreno AB, Paranjape K, ..., Ginevra C, Guy L
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Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Stratmann S, Vesterlund M, Umer HM, ..., Lehtiö J, Holmfeldt L
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Population structure and hybridisation in a population of Hawaiian feral chickens.
Martin Cerezo ML, López S, van Dorp L, ..., Henriksen R, Wright D
Heredity (Edinb) 130 (3) 154-162 [2023-03-00; online 2023-02-01]
Bioinformatics Support for Computational Resources [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Occupational inhalable agents constitute major risk factors for rheumatoid arthritis, particularly in the context of genetic predisposition and smoking.
Tang B, Liu Q, Ilar A, ..., Alfredsson L, Jiang X
Ann. Rheum. Dis. 82 (3) 316-323 [2023-03-00; online 2022-12-06]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Multiple introgressions shape mitochondrial evolutionary history in Drosophila paulistorum and the Drosophila willistoni group.
Baião GC, Schneider DI, Miller WJ, Klasson L
Mol. Phylogenet. Evol. 180 (-) 107683 [2023-03-00; online 2022-12-24]
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Multidrug-resistant Neisseria gonorrhoeae isolate SE690: mosaic penA-60.001 gene causing ceftriaxone resistance internationally has spread to the more antimicrobial-susceptible genomic lineage, Sweden, September 2022.
Golparian D, Vestberg N, Södersten W, ..., Bhattarai KH, Unemo M
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Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]
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Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk.
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Nat. Genet. 55 (3) 410-422 [2023-03-00; online 2023-03-13]
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Membrane permeability based on mesh analysis
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Journal of Colloid and Interface Science 633 (-) 526-535 [2023-03-00; online 2023-03-00]
Integrated Microscopy Technologies Gothenburg [Service]
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Isobaric labeling-based quantitative proteomics of FACS-purified immune cells and epithelial cells from the intestine of Crohn's disease patients reveals proteome changes of potential importance in disease pathogenesis.
Alfredsson J, Fabrik I, Gorreja F, ..., Lindskog EB, Wick MJ
Proteomics 23 (5) e2200366 [2023-03-00; online 2022-12-25]
Glycoproteomics and MS Proteomics [Collaborative]
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Increasing Complexity of the N-Glycome During Caenorhabditis Development.
Wilson IBH, Yan S, Jin C, ..., Schnabel R, Paschinger K
Mol. Cell Proteomics 22 (3) 100505 [2023-03-00; online 2023-01-28]
Glycoproteomics and MS Proteomics [Collaborative]
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Häggström G, Karl Hannl T, Holmgren P, ..., Skoglund N, Öhman M
Fuel 335 (-) 127059 [2023-03-00; online 2023-03-00]
Integrated Microscopy Technologies Umeå [Service]
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Fast three-dimensional image generation for healthy brain aging using diffeomorphic registration.
Fu J, Tzortzakakis A, Barroso J, ..., Moreno R, Alzheimer's Disease Neuroimaging Initiative
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Castaño C, Suarez-Vidal E, Zas R, ..., Oliva J, Sampedro L
Soil Biology and Biochemistry 178 (-) 108932 [2023-03-00; online 2023-03-00]
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Comprehensive characterization of complex glycosphingolipids in human pancreatic cancer tissues.
Hořejší K, Jin C, Vaňková Z, ..., Teneberg S, Holčapek M
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Cardiovascular disease-linked plasma proteins are mainly associated with lung volume.
Rydell A, Nerpin E, Zhou X, ..., Ärnlöv J, Malinovschi A
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NCF1-dependent production of ROS protects against lupus by regulating plasmacytoid dendritic cell development and functions.
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ACS Nano 17 (4) 3430-3441 [2023-02-28; online 2023-02-16]
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Nat Commun 14 (1) 995 [2023-02-22; online 2023-02-22]
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Boström ADE, Andersson P, Jamshidi E, ..., Åsberg M, Jokinen J
Transl Psychiatry 13 (1) 66 [2023-02-22; online 2023-02-22]
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Plant Cell 35 (2) 874-888 [2023-02-20; online 2022-11-26]
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Cell Reports Medicine - (-) 100956 [2023-02-17; online 2023-02-17]
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Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation.
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Nat Commun 14 (1) 910 [2023-02-17; online 2023-02-17]
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Antibiotic thermorubin tethers ribosomal subunits and impedes A-site interactions to perturb protein synthesis in bacteria.
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Anaerobic mercury methylators inhabit sinking particles of oxic water columns.
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Bioinformatics Support for Computational Resources [Service]
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Tissue-Specific Isolation of Tagged Arabidopsis Plastids.
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Integrated Microscopy Technologies Umeå [Service]
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Atherosclerosis 366 (-) 1-7 [2023-02-00; online 2023-01-12]
Affinity Proteomics Uppsala [Service]
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Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Genes Chromosomes Cancer 62 (2) 93-100 [2023-02-00; online 2022-09-30]
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Signal Processing 203 (-) 108809 [2023-02-00; online 2023-02-00]
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High-content analysis shows synergistic effects of low perfluorooctanoic acid (PFOS) and perfluorooctane sulfonic acid (PFOA) mixture concentrations on human breast epithelial cell carcinogenesis.
Pierozan P, Kosnik M, Karlsson O
Environ Int 172 (-) 107746 [2023-02-00; online 2023-01-12]
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Swedish NMR Centre (SNC) [Service]
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Distinct T cell subsets in adipose tissue are associated with obesity.
Haugstøyl ME, Cornillet M, Strand K, ..., Fernø J, Björkström NK
Eur. J. Immunol. 53 (2) e2249990 [2023-02-00; online 2022-12-13]
Bioinformatics Support for Computational Resources [Service]
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Diseased thyroid tissue classification in OCT images using deep learning: Towards surgical decision support.
Tampu IE, Eklund A, Johansson K, Gimm O, Haj-Hosseini N
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AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]
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Chemical composition and species identification of microalgal biomass grown at pilot-scale with municipal wastewater and CO2 from flue gases.
Lage S, Gentili FG
Chemosphere 313 (-) 137344 [2023-02-00; online 2022-11-26]
Swedish Metabolomics Centre (SMC) [Service]
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Carbon substrate selects for different lineages of N2O reducing communities in soils under anoxic conditions
Maheshwari A, Jones CM, Tiemann M, Hallin S
Soil Biology and Biochemistry 177 (-) 108909 [2023-02-00; online 2023-02-00]
Bioinformatics Support for Computational Resources [Service] NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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An annotated high-content fluorescence microscopy dataset with Hoechst 33342-stained nuclei and manually labelled outlines.
Arvidsson M, Rashed SK, Aits S
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Bioinformatics (NBIS) [Service] Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service]
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An allozyme polymorphism is associated with a large chromosomal inversion in the marine snail Littorina fabalis.
Le Moan A, Panova M, De Jode A, ..., Butlin R, Johannesson K
Evol Appl 16 (2) 279-292 [2023-02-00; online 2022-06-26]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung.
Sountoulidis A, Marco Salas S, Braun E, ..., Nilsson M, Samakovlis C
Nat Cell Biol 25 (2) 351-365 [2023-02-00; online 2023-01-16]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative] In Situ Sequencing (ISS) [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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7-month duration of SARS-CoV-2 mucosal immunoglobulin-A responses and protection.
Marking U, Bladh O, Havervall S, ..., Klingström J, Thålin C
Lancet Infect Dis 23 (2) 150-152 [2023-02-00; online 2023-01-11]
Affinity Proteomics Uppsala [Collaborative]
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6α-hydroxylated bile acids mediate TGR5 signalling to improve glucose metabolism upon dietary fiber supplementation in mice.
Makki K, Brolin H, Petersen N, ..., Marschall HU, Bäckhed F
Gut 72 (2) 314-324 [2023-02-00; online 2022-06-13]
Bioinformatics Support for Computational Resources [Service]
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Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis.
van Creij J, Auxier B, An J, ..., Pan Z, Limpens E
BMC Genomics 24 (1) 53 [2023-01-28; online 2023-01-28]
Microbial Single Cell Genomics [Service]
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The motor system is exceptionally vulnerable to absence of the ubiquitously expressed superoxide dismutase-1.
Park JH, Nordström U, Tsiakas K, ..., Marklund SL, Andersen PM
Brain Commun 5 (1) fcad017 [2023-01-27; online 2023-01-27]
Swedish Metabolomics Centre (SMC) [Service]
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Inversions maintain differences between migratory phenotypes of a songbird.
Lundberg M, Mackintosh A, Petri A, Bensch S
Nat Commun 14 (1) 452 [2023-01-27; online 2023-01-27]
Bioinformatics Support for Computational Resources [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
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Cotman AE, Durcik M, Benedetto Tiz D, ..., Sterk GJ, Kikelj D
J. Med. Chem. 66 (2) 1380-1425 [2023-01-26; online 2023-01-12]
Drug Discovery and Development (DDD) [Service]
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Starch intake, amylase gene copy number variation, plasma proteins, and risk of cardiovascular disease and mortality.
Li H, Borné Y, Wang Y, Sonestedt E
BMC Med 21 (1) 27 [2023-01-24; online 2023-01-24]
Affinity Proteomics Uppsala [Service]
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Ginsenoside Rg3 Reduces the Toxicity of Graphene Oxide Used for pH-Responsive Delivery of Doxorubicin to Liver and Breast Cancer Cells.
Rahimi S, van Leeuwen D, Roshanzamir F, ..., Esbjörner EK, Mijakovic I
Pharmaceutics 15 (2) - [2023-01-24; online 2023-01-24]
Integrated Microscopy Technologies Gothenburg [Service]
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Direct structure determination of vemurafenib polymorphism from compact spherulites using 3D electron diffraction.
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Commun Chem 6 (1) 18 [2023-01-23; online 2023-01-23]
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Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment.
Ezzamouri B, Rosario D, Bidkhori G, ..., Uhlen M, Shoaie S
npj Syst Biol Appl 9 (1) 2 [2023-01-21; online 2023-01-21]
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Biocontrol Effect of Clonostachys rosea on Fusarium graminearum Infection and Mycotoxin Detoxification in Oat (Avena sativa).
Khairullina A, Micic N, Jørgensen HJL, ..., Collinge DB, Jensen B
Plants (Basel) 12 (3) - [2023-01-21; online 2023-01-21]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.).
Höök L, Näsvall K, Vila R, Wiklund C, Backström N
Chromosome Res. 31 (1) 2 [2023-01-20; online 2023-01-20]
Bioinformatics Support for Computational Resources [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
High cardiomyocyte diversity in human early prenatal heart development.
Sylvén C, Wärdell E, Månsson-Broberg A, ..., Björklund Å, Giacomello S
iScience 26 (1) 105857 [2023-01-20; online 2022-12-21]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Cerebellar granule neurons induce Cyclin D1 before the onset of motor symptoms in Huntington's disease mice.
Bauer S, Chen CY, Jonson M, ..., Magadi SS, Jackson WS
Acta Neuropathol Commun 11 (1) 17 [2023-01-20; online 2023-01-20]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis.
Shemirani MI, Tilevik D, Tilevik A, ..., Enroth H, Pernestig AK
BMC Infect. Dis. 23 (1) 39 [2023-01-20; online 2023-01-20]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Single-cell analysis of myeloid cells in HPV+ tonsillar cancer.
Jimenez DG, Altunbulakli C, Swoboda S, ..., Greiff L, Lindstedt M
Front Immunol 13 (-) 1087843 [2023-01-19; online 2023-01-19]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics [Service] Clinical Genomics Lund [Service]
DOI Crossref
MOXD1 is a gate-keeper of organ homeostasis and functions as a tumor-suppressor in neuroblastoma
Fredlund E, Andersson S, Hilgert E, ..., van Nes J, Mohlin S
- - (-) - [2023-01-19; online 2023-01-19]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Highly differentiated loci resolve phylogenetic relationships in the Bean Goose complex.
Ottenburghs J, Honka J, Heikkinen ME, ..., Müskens GJDM, Ellegren H
BMC Ecol Evol 23 (1) 2 [2023-01-19; online 2023-01-19]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Identification and evaluation of small-molecule inhibitors against the dNTPase SAMHD1viaa comprehensive screening funnel
Zhang SM, Paulin CBJ, Michel M, ..., Helleday T, Rudd SG
- - (-) - [2023-01-18; online 2023-01-18]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
A chemical screen underscores the essential role of STAT1-dependent IFNγ signaling to regulate HLA-I expression in cancer cells.
Barz M, Porebski B, Panshikar P, ..., Hühn D, Fernandez-Capetillo O
MicroPubl Biol 2023 (-) - [2023-01-18; online 2023-01-18]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Zero-Degree Celsius Capillary Electrophoresis Electrospray Ionization for Hydrogen Exchange Mass Spectrometry.
Aerts JT, Andrén PE, Jansson ET
Anal. Chem. 95 (2) 1149-1158 [2023-01-17; online 2022-12-22]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Novel and unusual genes for nitrogen and metal cycling in Planctomycetota- and KSB1-affiliated metagenome-assembled genomes reconstructed from a marine subsea tunnel.
Suarez C, Hackl T, Wilen BM, ..., Jetten MSM, Dalcin Martins P
FEMS Microbiol. Lett. 370 (-) - [2023-01-17; online 2023-06-09]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Fluorogenic properties of 4-dimethylaminocinnamaldehyde (DMACA) enable high resolution imaging of cell-wall-bound proanthocyanidins in plant root tissues.
Chowdhury J, Ferdous J, Lihavainen J, Albrectsen BR, Lundberg-Felten J
Front Plant Sci 13 (-) 1060804 [2023-01-16; online 2023-01-16]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
Microbial communities mediating net methylmercury formation along a trophic gradient in a peatland chronosequence.
Wang B, Hu H, Bishop K, ..., Bertilsson S, Bravo AG
J Hazard Mater 442 (-) 130057 [2023-01-15; online 2022-09-23]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Methylmercury formation in biofilms of Geobacter sulfurreducens.
Yunda E, Gutensohn M, Ramstedt M, Björn E
Front Microbiol 14 (-) 1079000 [2023-01-13; online 2023-01-13]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia.
Arendt ML, Sakthikumar S, Melin M, ..., Rönnberg H, Lindblad-Toh K
Sci Rep 13 (1) 632 [2023-01-12; online 2023-01-12]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A hypomorphic variant in the translocase of the outer mitochondrial membrane complex subunit TOMM7 causes short stature and developmental delay.
Young C, Batkovskyte D, Kitamura M, ..., Grigelioniene G, Kobayashi T
HGG Adv 4 (1) 100148 [2023-01-12; online 2022-10-04]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Single-cell transcriptomics reveals correct developmental dynamics and high-quality midbrain cell types by improved hESC differentiation.
Nishimura K, Yang S, Lee KW, ..., Linnarsson S, Arenas E
Stem Cell Reports 18 (1) 337-353 [2023-01-10; online 2022-11-17]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Persistence of salivary antibody responses after COVID-19 vaccination is associated with oral microbiome variation in both healthy and people living with HIV.
Ghorbani M, Al-Manei K, Naud S, ..., Aleman S, Sällberg Chen M
Front Immunol 13 (-) 1079995 [2023-01-10; online 2023-01-10]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Longitudinal single-cell analysis of SARS-CoV-2-reactive B cells uncovers persistence of early-formed, antigen-specific clones.
Scharf L, Axelsson H, Emmanouilidi A, ..., Bemark M, Angeletti D
JCI Insight 8 (1) - [2023-01-10; online 2023-01-10]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies.
Pushparaj P, Nicoletto A, Sheward DJ, ..., Corcoran M, Karlsson Hedestam GB
Immunity 56 (1) 193-206.e7 [2023-01-10; online 2022-12-12]
Structural Proteomics [Collaborative]
PubMed DOI Crossref
Case Report: Whole genome sequencing identifies CCDC88C as a novel JAK2 fusion partner in pediatric T-cell acute lymphoblastic leukemia.
Krstic A, Rezayee F, Saft L, ..., Svenberg P, Barbany G
Front Pediatr 10 (-) 1082986 [2023-01-10; online 2023-01-10]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Antibiotic perseverance increases the risk of resistance development.
Brandis G, Larsson J, Elf J
Proc. Natl. Acad. Sci. U.S.A. 120 (2) e2216216120 [2023-01-10; online 2023-01-03]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean.
Koptekin D, Yüncü E, Rodríguez-Varela R, ..., Götherström A, Somel M
Curr. Biol. 33 (1) 41-57.e15 [2023-01-09; online 2022-12-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of novel autoantigens as potential biomarkers in juvenile idiopathic arthritis associated uveitis.
Arve-Butler S, Mossberg A, Kahn F, ..., Månsson B, Kahn R
Front Pediatr 10 (-) 1091308 [2023-01-09; online 2023-01-09]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice.
Hases L, Stepanauskaite L, Birgersson M, ..., Engstrand L, Williams C
Commun Biol 6 (1) 20 [2023-01-09; online 2023-01-09]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
The effect of side chain variations on quinazoline-pyrimidine G-quadruplex DNA ligands.
Bhuma N, Chand K, Andréasson M, ..., Öhlund D, Chorell E
Eur J Med Chem 248 (-) 115103 [2023-01-08; online 2023-01-08]
Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Early response evaluation by single cell signaling profiling in acute myeloid leukemia.
Tislevoll BS, Hellesøy M, Fagerholt OHE, ..., Blaser N, Gjertsen BT
Nat Commun 14 (1) 115 [2023-01-07; online 2023-01-07]
Clinical Genomics [Service] Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
Deep Learning on Ultrasound Images Visualizes the Femoral Nerve with Good Precision.
Berggreen J, Johansson A, Jahr J, Möller S, Jansson T
Healthcare (Basel) 11 (2) - [2023-01-07; online 2023-01-07]
AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]
PubMed DOI Crossref
GotEnzymes: an extensive database of enzyme parameter predictions.
Li F, Chen Y, Anton M, Nielsen J
Nucleic Acids Res. 51 (D1) D583-D586 [2023-01-06; online 2022-09-29]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Technology development] Systems Biology [Technology development]
PubMed DOI Crossref
The genetic history of Scandinavia from the Roman Iron Age to the present.
Rodríguez-Varela R, Moore KHS, Ebenesersdóttir SS, ..., Helgason A, Götherström A
Cell 186 (1) 32-46.e19 [2023-01-05; online 2023-01-08]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Novel cancer gene discovery using a forward genetic screen in RCAS-PDGFB-driven gliomas.
Weishaupt H, Čančer M, Rosén G, ..., Ameur A, Swartling FJ
Neuro-oncology 25 (1) 97-107 [2023-01-05; online 2022-06-24]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
ASV portal: an interface to DNA-based biodiversity data in the Living Atlas.
Prager M, Lundin D, Ronquist F, Andersson AF
BMC Bioinformatics 24 (1) 6 [2023-01-05; online 2023-01-05]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
PubMed DOI Crossref
Methylation in MAD1L1 is associated with the severity of suicide attempt and phenotypes of depression.
Sokolov AV, Manu DM, Nordberg DOT, ..., Jokinen J, Schiöth HB
Clin Epigenetics 15 (1) 1 [2023-01-04; online 2023-01-04]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain.
Virtanen AT, Haikarainen T, Sampathkumar P, ..., Hubbard SR, Silvennoinen O
Pharmaceuticals (Basel) 16 (1) - [2023-01-04; online 2023-01-04]
Drug Discovery and Development (DDD) [Service]
PubMed DOI Crossref
Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles.
Immonen E, Sayadi A, Stojković B, ..., Wiberg RAW, Arnqvist G
Genome Biol Evol 15 (1) - [2023-01-04; online 2022-12-22]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats.
Alaei Kakhki N, Schweizer M, Lutgen D, ..., Schielzeth H, Burri R
Mol. Biol. Evol. 40 (1) - [2023-01-04; online 2022-12-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Optimization of N-Piperidinyl-Benzimidazolone Derivatives as Potent and Selective Inhibitors of 8-Oxo-Guanine DNA Glycosylase 1.
Wallner O, Cázares-Körner A, Scaletti ER, ..., Helleday T, Michel M
ChemMedChem 18 (1) e202200310 [2023-01-03; online 2022-10-13]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Extracellular Galectin 4 Drives Immune Evasion and Promotes T-cell Apoptosis in Pancreatic Cancer.
Lidström T, Cumming J, Gaur R, ..., Patthey C, Öhlund D
Cancer Immunol Res 11 (1) 72-92 [2023-01-03; online 2022-12-09]
Bioinformatics Support for Computational Resources [Service] Clinical Genomics [Service] Clinical Genomics Umeå [Service]
PubMed DOI Crossref
Breast cancer patient-derived whole-tumor cell culture model for efficient drug profiling and treatment response prediction.
Chen X, Sifakis EG, Robertson S, ..., Ma R, Hartman J
Proc. Natl. Acad. Sci. U.S.A. 120 (1) e2209856120 [2023-01-03; online 2022-12-27]
Bioinformatics Support for Computational Resources [Service] Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models.
Allesøe RL, Lundgaard AT, Hernández Medina R, ..., Brunak S, IMI DIRECT Consortium
Nat. Biotechnol. - (-) - [2023-01-02; online 2023-01-02]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
Cytokinin signaling regulates two-stage inflorescence arrest in Arabidopsis.
Walker CH, Ware A, Šimura J, ..., Wilson Z, Bennett T
Plant Physiol. 191 (1) 479-495 [2023-01-02; online 2022-11-05]
Swedish Metabolomics Centre (SMC) [Service]
PubMed DOI Crossref
The path to immortalization of cells starts by managing stress through gene duplications.
Lewerentz J, Johansson AM, Stenberg P
Exp. Cell Res. 422 (1) 113431 [2023-01-01; online 2022-11-21]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The injury-induced transcription factor SOX9 alters the expression of LBR, HMGA2, and HIPK3 in the human kidney.
Kha M, Krawczyk K, Choong OK, ..., Swärd K, Johansson ME
Am. J. Physiol. Renal Physiol. 324 (1) F75-F90 [2023-01-01; online 2022-12-01]
Clinical Genomics [Service] Clinical Genomics Gothenburg [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Nuclear and mitochondrial DNA alterations in pheochromocytomas and paragangliomas, and their potential treatment.
Tabebi M, Söderkvist P, Gimm O
Endocr. Relat. Cancer 30 (1) - [2023-01-01; online 2022-12-08]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Associations of PFAS-related plasma metabolites with cholesterol and triglyceride concentrations.
Schillemans T, Bergdahl IA, Hanhineva K, ..., Åkesson A, Brunius C
Environ. Res. 216 (Pt 2) 114570 [2023-01-01; online 2022-10-13]
Bioinformatics Support for Computational Resources [Service] Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Widespread CNS pathology in amyotrophic lateral sclerosis homozygous for the D90A SOD1 mutation
Forsberg KM, Graffmo KS, Stenvall E, ..., Brännström T, Andersen PM
Acta Neuropathol 145 (1) 13-28 [2023-01-00; online 2022-11-16]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Three Adult Cases of STAT1 Gain-of-Function with Chronic Mucocutaneous Candidiasis Treated with JAK Inhibitors.
Borgström EW, Edvinsson M, Pérez LP, ..., Brodin P, Bergman P
J Clin Immunol 43 (1) 136-150 [2023-01-00; online 2022-09-02]
Bioinformatics Support for Computational Resources [Service] Cellular Immunomonitoring [Collaborative] Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia.
Wen J, Trost B, Engchuan W, ..., Yuen RKC, Szatkiewicz JP
Mol. Psychiatry 28 (1) 475-482 [2023-01-00; online 2022-11-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Palmoplantar keratoderma and digital clubbing in 2 sisters with hypertrophic osteoarthropathy.
Eriksson D, Gyll D, Virtanen M, ..., Klar J, Stattin EL
JAAD Case Rep 31 (-) 133-136 [2023-01-00; online 2022-12-01]
Clinical Genomics [Service] Clinical Genomics Uppsala [Service]
PubMed DOI Crossref
NMR spectrum reconstruction as a pattern recognition problem.
Jahangiri A, Han X, Lesovoy D, ..., Achour A, Orekhov V
J Magn Reson 346 (-) 107342 [2023-01-00; online 2022-11-24]
Swedish NMR Centre (SNC) [Technology development]
PubMed DOI Crossref
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics.
Gueto-Tettay C, Tang D, Happonen L, ..., Malmström J, Malmström L
PLoS Comput. Biol. 19 (1) e1010457 [2023-01-00; online 2023-01-20]
Structural Proteomics [Technology development]
PubMed DOI Crossref
Graphene oxide elicits microbiome-dependent type 2 immune responses via the aryl hydrocarbon receptor.
Peng G, Sinkko HM, Alenius H, ..., Bräutigam L, Fadeel B
Nat Nanotechnol 18 (1) 42-48 [2023-01-00; online 2022-12-12]
Bioinformatics Support for Computational Resources [Service] Eukaryotic Single Cell Genomics (ESCG) [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genotype-first approach to identify associations between CDH1 germline variants and cancer phenotypes: a multicentre study by the European Reference Network on Genetic Tumour Risk Syndromes.
Garcia-Pelaez J, Barbosa-Matos R, Lobo S, ..., Hoogerbrugge N, Oliveira C
Lancet Oncol 24 (1) 91-106 [2023-01-00; online 2022-11-24]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Gene gain facilitated endosymbiotic evolution of Chlamydiae.
Dharamshi JE, Köstlbacher S, Schön ME, ..., Ettema TJG, Horn M
Nat Microbiol 8 (1) 40-54 [2023-01-00; online 2023-01-05]
Bioinformatics Support for Computational Resources [Service]
PubMed DOI Crossref
Enantioselective CE-MS analysis of ketamine metabolites in urine.
Sandbaumhüter FA, Aerts JT, Theurillat R, ..., Thormann W, Jansson ET
Electrophoresis 44 (1-2) 125-134 [2023-01-00; online 2022-12-09]
Spatial Mass Spectrometry [Collaborative]
PubMed DOI Crossref
Cerebral small vessel disease: Recent advances and future directions.
Markus HS, de Leeuw FE
Int J Stroke 18 (1) 4-14 [2023-01-00; online 2022-12-29]
Clinical Genomics [Service] Clinical Genomics Lund [Service]
PubMed DOI Crossref
Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs.
Lingaas F, Tengvall K, Jansen JH, ..., Lindblad-Toh K, Wang C
PLoS Genet. 19 (1) e1010599 [2023-01-00; online 2023-01-24]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Automatic Time-Resolved Cardiovascular Segmentation of 4D Flow MRI Using Deep Learning.
Bustamante M, Viola F, Engvall J, Carlhäll CJ, Ebbers T
J Magn Reson Imaging 57 (1) 191-203 [2023-01-00; online 2022-05-04]
AIDA Data Hub [Service] Bioinformatics (NBIS) [Service]
DOI Crossref
Aerosol-based deposition of broadband antireflective silica coating with closed mesoporous structure
Zäll E, Järn M, Karlsson S, ..., Sundin M, Wågberg T
Solar Energy Materials and Solar Cells 250 (-) 112078 [2023-01-00; online 2023-01-00]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
A comprehensive characterization of patients diagnosed with post-COVID-19 condition in Sweden 16 months after the introduction of the International Classification of Diseases Tenth Revision diagnosis code (U09.9): a population-based cohort study.
Bygdell M, Leach S, Lundberg L, ..., Gisslén M, Nyberg F
Int J Infect Dis 126 (-) 104-113 [2023-01-00; online 2022-11-21]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
DOI Crossref
Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3
Behanova A, Avenel C, Andersson A, ..., Östman A, Wählby C
Biol. Imaging 3 (-) - [2023-00-00; online 2023-02-20]
BioImage Informatics [Technology development] Bioinformatics (NBIS) [Technology development]
DOI Crossref
Systematics of the avian family Alaudidae using multilocus and genomic data
Alström P, Mohammadi Z, Enbody ED, ..., Donald PF, Stervander M
Avian Research 14 (-) 100095 [2023-00-00; online 2023-00-00]
Bioinformatics Support for Computational Resources [Service]
DOI Crossref
Sequential extraction of hemicelluloses by subcritical water improves saccharification of hybrid aspen wood grown in greenhouse and field conditions
Sivan P, Heinonen E, Latha Gandla M, ..., Mellerowicz EJ, Vilaplana F
Green Chem. 25 (14) 5634-5646 [2023-00-00; online 2023-00-00]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
On the understanding of bio-oil formation from the hydrothermal liquefaction of organosolv lignin isolated from softwood and hardwood sawdust
Paulsen Thoresen P, Fahrni J, Lange H, ..., Christakopoulos P, Matsakas L
Sustainable Energy Fuels 7 (22) 5361-5373 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Metabolomics-based analysis in Daphnia magna after exposure to low environmental concentrations of polystyrene nanoparticles
Kelpsiene E, Cedervall T, Malmendal A
Environ. Sci.: Nano 10 (7) 1858-1866 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Fluorescent carbon dots from birch leaves for sustainable electroluminescent devices
Tang S, Liu Y, Opoku H, ..., Edman L, Wang J
Green Chem. 25 (23) 9884-9895 [2023-00-00; online 2023-00-00]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Exploring the impact of select anchor groups for norbornadiene/quadricyclane single-molecule switches
Ghasemi S, Ornago L, Liasi Z, ..., Lara-Avila S, Moth-Poulsen K
J. Mater. Chem. C 11 (44) 15412-15418 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
Drug repurposing screens identify compounds that inhibit α-synuclein oligomers' membrane disruption and block antibody interactions
Somavarapu AK, Kleijwegt G, Nagaraj M, ..., Nielsen J, Otzen DE
Chem. Sci. 14 (11) 3030-3047 [2023-00-00; online 2023-00-00]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
Building a precision medicine infrastructure at a national level: The Swedish experience
Edsjö A, Lindstrand A, Gisselsson D, ..., Fioretos T, Rosenquist R
Camb. prisms Precis. med. 1 (-) - [2023-00-00; online 2023-02-27]
Clinical Genomics [Collaborative] Clinical Genomics Gothenburg [Collaborative]
DOI Crossref
Branched polyesters from radical ring-opening polymerization of cyclic ketene acetals: synthesis, chemical hydrolysis and biodegradation
Mousa M, Jonsson M, Wilson O, ..., Larsson Kron A, Malmström E
Polym. Chem. 14 (47) 5154-5165 [2023-00-00; online 2023-00-00]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Affinity-Purification Combined with Crosslinking Mass Spectrometry for Identification and Structural Modeling of Host–Pathogen Protein–Protein Complexes
Happonen LJ
Methods Mol. Biol. 2674 (-) 181-200 [2023-00-00; online 2023-06-01]
Structural Proteomics [Technology development]
DOI Crossref
A novel biorefinery concept based on marginally used halophyte biomass
Monção M, Thoresen PP, Wretborn T, ..., Christakopoulos P, Matsakas L
Sustainable Energy Fuels 7 (16) 3902-3918 [2023-00-00; online 2023-00-00]
Swedish NMR Centre (SNC) [Service]
DOI Crossref
A crowd-sourced genomic project to assess hybrid content in a rare avian vagrant (Azure Tit Cyanistes cyanus (Pallas, 1770))
Irestedt M, Thörn F, Ericson PGP, ..., Johansson F, Nylander JAA
Avian Research 14 (-) 100130 [2023-00-00; online 2023-00-00]
Bioinformatics Support for Computational Resources [Service]
SciLifeLab Data Centre
Publications 9.5.1