Publications 2024

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157 publications

PubMed DOI Crossref
Life Science 2.0: reframing the life science sector for 'the benefit on mankind'.
Vallin M, Tomson G, Kampmann B, ..., Wanyenze RK, Ottersen OP
Glob Health Action 17 (1) 2330758 [2024-12-31; online 2024-04-05]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
DOI Crossref
CRISPR-Cas9 Knockout Screens Identify DNA Damage Response Pathways and BTK as Essential for Cisplatin Response in Diffuse Large B-Cell Lymphoma
Issa II, Due H, Brøndum RF, ..., Schmierer B, Dybkær K
Cancers (Basel) 16 (13) 2437 [2024-07-02; online 2024-07-02]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Carboxyl-group compounds activate voltage-gated potassium channels via a distinct mechanism.
Rönnelid O, Elinder F
J. Gen. Physiol. 156 (7) - [2024-07-01; online 2024-06-04]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Cancer Core Europe: Leveraging Institutional Synergies to Advance Oncology Research and Care Globally.
Carmona J, Chavarria E, Donoghue K, ..., Zwart W, Tabernero J
Cancer Discov 14 (7) 1147-1153 [2024-07-01; online 2024-06-13]
Clinical Genomics Stockholm [Collaborative]
PubMed DOI Crossref
Detection and quantification of Na,K-ATPase dimers in the plasma membrane of living cells by FRET-FCS.
Nordahl L, Akkuratov EE, Heimgärtner J, ..., Wennmalm S, Brismar H
Biochimica et Biophysica Acta (BBA) - General Subjects 1868 (7) 130619 [2024-07-00; online 2024-04-20]
Integrated Microscopy Technologies Stockholm [Collaborative]
DOI Crossref
Membrane topography and the overestimation of protein clustering in single molecule localisation microscopy – identification and correction
Adler J, Bernhem K, Parmryd I
Commun Biol 7 (1) - [2024-06-29; online 2024-06-29]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis.
Edelbroek B, Kjellin J, Jerlström-Hultqvist J, Koskiniemi S, Söderbom F
Sci Data 11 (1) 678 [2024-06-22; online 2024-06-22]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Completed genome and emergence scenario of the multidrug-resistant nosocomial pathogen Staphylococcus epidermidis ST215.
Kellgren T, Dwibedi C, Widerström M, ..., Rydén P, Johansson A
BMC Microbiol. 24 (1) 215 [2024-06-19; online 2024-06-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comprehensive Genomic Profiling Alters Clinical Diagnoses in a Significant Fraction of Tumors Suspicious of Sarcoma.
Öfverholm I, Wallander K, Haglund C, ..., Lin Y, Haglund de Flon F
Clin. Cancer Res. 30 (12) 2647-2658 [2024-06-14; online 2024-04-04]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
descSPIM: an affordable and easy-to-build light-sheet microscope optimized for tissue clearing techniques.
Otomo K, Omura T, Nozawa Y, ..., Brismar H, Susaki EA
Nat Commun 15 (1) 4941 [2024-06-12; online 2024-06-12]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Integrative transcriptomic and proteomic profiling of the effects of cell confluency on gene expression.
Lobo V, Shcherbinina E, Westholm JO, ..., Anastasakis DG, Sarshad AA
Sci Data 11 (1) 617 [2024-06-12; online 2024-06-12]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice.
Masarapu Y, Cekanaviciute E, Andrusivova Z, ..., Costes SV, Giacomello S
Nat Commun 15 (1) 4778 [2024-06-11; online 2024-06-11]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Distinct origin and region-dependent contribution of stromal fibroblasts to fibrosis following traumatic injury in mice.
Holl D, Hau WF, Julien A, ..., Dias DO, Göritz C
Nat. Neurosci. - (-) - [2024-06-07; online 2024-06-07]
Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.
Wernersson E, Gelali E, Girelli G, ..., Crosetto N, Bienko M
Nat. Methods - (-) - [2024-06-06; online 2024-06-06]
Integrated Microscopy Technologies Stockholm [Collaborative] Spatial Proteomics [Service]
PubMed DOI Crossref
Detection of rare variants among nuclei populating the arbuscular mycorrhizal fungal model species Rhizophagus irregularis DAOM197198.
Manyara D, Sánchez-García M, Montoliu-Nerin M, Rosling A
G3 (Bethesda) 14 (6) - [2024-06-05; online 2024-04-24]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ancient Sheep Genomes Reveal Four Millennia of North European Short-Tailed Sheep in the Baltic Sea Region.
Larsson MNA, Morell Miranda P, Pan L, ..., Storå J, Günther T
Genome Biol Evol 16 (6) - [2024-06-04; online 2024-05-25]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phylogenomic analysis of Stylops reveals the evolutionary history of a Holarctic Strepsiptera radiation parasitizing wild bees.
Lähteenaro M, Benda D, Straka J, Nylander JAA, Bergsten J
Mol. Phylogenet. Evol. 195 (-) 108068 [2024-06-00; online 2024-03-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Blood biomarkers of Alzheimer's disease in the community: Variation by chronic diseases and inflammatory status.
Valletta M, Vetrano DL, Rizzuto D, ..., Fratiglioni L, Grande G
Alzheimers Dement 20 (6) 4115-4125 [2024-06-00; online 2024-05-08]
Affinity Proteomics Stockholm [Collaborative]
PubMed DOI Crossref
PIK3CA mutations in endocrine-resistant breast cancer.
Schagerholm C, Robertson S, Toosi H, Sifakis EG, Hartman J
Sci Rep 14 (1) 12542 [2024-05-31; online 2024-05-31]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
NGS method for parallel processing of high quality, damaged or fragmented input material using target enrichment.
Lyander A, Gellerbring A, Hägglund M, Elhami K, Wirta V
PLoS ONE 19 (5) e0304411 [2024-05-29; online 2024-05-29]
Clinical Genomics Stockholm [Technology development]
PubMed DOI Crossref
Species-specific dynamics may cause deviations from general biogeographical predictions - evidence from a population genomics study of a New Guinean endemic passerine bird family (Melampittidae).
Müller IA, Thörn F, Rajan S, ..., Jønsson KA, Irestedt M
PLoS ONE 19 (5) e0293715 [2024-05-23; online 2024-05-23]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae.
Thureborn O, Wikström N, Razafimandimbison SG, Rydin C
PLoS ONE 19 (5) e0302365 [2024-05-20; online 2024-05-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Retron-Eco1 assembles NAD+-hydrolyzing filaments that provide immunity against bacteriophages.
Carabias A, Camara-Wilpert S, Mestre MR, ..., Pinilla-Redondo R, Montoya G
Mol. Cell - (-) - [2024-05-18; online 2024-05-18]
Cryo-EM [Service]
PubMed DOI Crossref
Complex genetic architecture of the chicken Growth1 QTL region.
Ou JH, Rönneburg T, Carlborg Ö, ..., Siegel PB, Rubin CJ
PLoS ONE 19 (5) e0295109 [2024-05-13; online 2024-05-13]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum.
Gutiérrez-Valencia J, Zervakis PI, Postel Z, ..., Arroyo J, Slotte T
Mol. Biol. Evol. - (-) - [2024-05-06; online 2024-05-06]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Colonial-driven extinction of the blue antelope despite genomic adaptation to low population size.
Hempel E, Faith JT, Preick M, ..., Westbury MV, Hofreiter M
Curr. Biol. 34 (9) 2020-2029.e6 [2024-05-06; online 2024-04-12]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Meiotic drive against chromosome fusions in butterfly hybrids.
Boman J, Wiklund C, Vila R, Backström N
Chromosome Res. 32 (2) 7 [2024-05-04; online 2024-05-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Growth and mortality rates of picophytoplankton in the Baltic Sea Proper
Alegria Zufia J, Laber C, Legrand C, Lindehoff E, Farnelid H
Mar. Ecol. Prog. Ser. 735 (-) 63-76 [2024-05-02; online 2024-05-02]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Sex-biased gene expression during neural differentiation of human embryonic stem cells
Pottmeier P, Nikolantonaki D, Lanner F, Peuckert C, Jazin E
Front Cell Dev Biol 12 (-) - [2024-05-01; online 2024-05-01]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Male-transmitted transgenerational effects of the herbicide linuron on DNA methylation profiles in Xenopus tropicalis brain and testis.
Roza M, Eriksson ANM, Svanholm S, Berg C, Karlsson O
Sci. Total Environ. 923 (-) 170949 [2024-05-01; online 2024-02-15]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chromatin accessibility during human first-trimester neurodevelopment.
Mannens CCA, Hu L, Lönnerberg P, ..., Posthuma D, Linnarsson S
Nature - (-) - [2024-05-01; online 2024-05-01]
NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Head-to-head comparison of relevant cell sources of small extracellular vesicles for cardiac repair: Superiority of embryonic stem cells.
González-King H, Rodrigues PG, Albery T, ..., Wang QD, Jennbacken K
J Extracell Vesicles 13 (5) e12445 [2024-05-00; online 2024-05-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Population genomic history of the endangered Anatolian and Cyprian mouflons in relation to worldwide wild, feral and domestic sheep lineages.
Atağ G, Kaptan D, Yüncü E, ..., Hadjisterkotis E, Somel M
Genome Biol Evol - (-) - [2024-04-27; online 2024-04-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Loss of NEDD8 in cancer cells causes vulnerability to immune checkpoint blockade in triple-negative breast cancer.
Papakyriacou I, Kutkaite G, Rúbies Bedós M, ..., Menden MP, Mao Y
Nat Commun 15 (1) 3581 [2024-04-27; online 2024-04-27]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Phenotypic characterization and candidate gene analysis of a short kernel and brassinosteroid insensitive mutant from hexaploid oat (Avena sativa).
Tsardakas Renhuldt N, Bentzer J, Ahrén D, Marmon S, Sirijovski N
Front Plant Sci 15 (-) 1358490 [2024-04-26; online 2024-04-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue.
Zhang N, Harbers L, Simonetti M, ..., Bienko M, Crosetto N
Nat Commun 15 (1) 3475 [2024-04-24; online 2024-04-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A chemical inhibitor of IST1-CHMP1B interaction impairs endosomal recycling and induces noncanonical LC3 lipidation.
Knyazeva A, Li S, Corkery DP, ..., Waldmann H, Wu Y
Proc. Natl. Acad. Sci. U.S.A. 121 (17) e2317680121 [2024-04-23; online 2024-04-18]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
Radiolabeled 15-mer peptide internalization is mediated by megalin (LRP2 receptor) in a CRISPR/Cas9-based LRP2 knockout human kidney cell model.
Durinova A, Smutna L, Barta P, ..., Pavek P, Trejtnar F
EJNMMI Radiopharm Chem 9 (1) 32 [2024-04-18; online 2024-04-18]
CRISPR Functional Genomics [Collaborative]
PubMed DOI Crossref
Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation.
Ten Berk de Boer E, Ameur A, Bunikis I, ..., Eisfeldt J, Lindstrand A
Sci Rep 14 (1) 9000 [2024-04-18; online 2024-04-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Effects of bottom trawling and environmental factors on benthic bacteria, meiofauna and macrofauna communities and benthic ecosystem processes.
Bradshaw C, Iburg S, Morys C, ..., Jonsson P, Nascimento FJA
Sci. Total Environ. 921 (-) 171076 [2024-04-15; online 2024-02-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Growth-regulated co-occupancy of Mediator and Lsm3 at intronic ribosomal protein genes.
Abdel-Fattah WR, Carlsson M, Hu G, ..., Ronne H, Björklund S
Nucleic Acids Res. - (-) - [2024-04-13; online 2024-04-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Dual molecule targeting HDAC6 leads to intratumoral CD4+ cytotoxic lymphocytes recruitment through MHC-II upregulation on lung cancer cells.
Ducellier S, Demeules M, Letribot B, ..., Nascimento M, Apcher S
J Immunother Cancer 12 (4) - [2024-04-11; online 2024-04-11]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology.
Kukanja P, Langseth CM, Rubio Rodríguez-Kirby LA, ..., Nilsson M, Castelo-Branco G
Cell 187 (8) 1990-2009.e19 [2024-04-11; online 2024-03-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A time course analysis through diapause reveals dynamic temporal patterns of microRNAs associated with endocrine regulation in the butterfly Pieris napi.
Roberts KT, Steward RA, Süess P, Lehmann P, Wheat CW
Mol. Ecol. - (-) e17348 [2024-04-10; online 2024-04-10]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Exploring the short linear motif-mediated protein-protein interactions of CrkL through ProP-PD.
Pagano L, Simonetti L, Pennacchietti V, ..., Ivarsson Y, Gianni S
Biochem. Biophys. Res. Commun. 703 (-) 149658 [2024-04-09; online 2024-02-07]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Deletion of the TMEM30A gene enables leukemic cell evasion of NK cell cytotoxicity.
Kristenson L, Badami C, Ljungberg A, ..., Tang KW, Thorén FB
Proc. Natl. Acad. Sci. U.S.A. 121 (15) e2316447121 [2024-04-09; online 2024-04-01]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria.
Huseby DL, Cao S, Zamaratski E, ..., Hughes D, Karlén A
Proc. Natl. Acad. Sci. U.S.A. 121 (15) e2317274121 [2024-04-09; online 2024-04-05]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
A phenotypic screening approach to target p60AmotL2-expressing invasive cancer cells.
Fonseca P, Cui W, Struyf N, ..., Östling P, Holmgren L
J. Exp. Clin. Cancer Res. 43 (1) 107 [2024-04-09; online 2024-04-09]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Functional redundancy revealed by the deletion of the mimivirus GMC-oxidoreductase genes.
Alempic JM, Bisio H, Villalta A, ..., Couté Y, Abergel C
Microlife 5 (-) uqae006 [2024-04-05; online 2024-04-05]
Cryo-EM [Service]
PubMed DOI Crossref
Adaptive introgression reveals the genetic basis of a sexually selected syndrome in wall lizards.
Feiner N, Yang W, Bunikis I, While GM, Uller T
Sci Adv 10 (14) eadk9315 [2024-04-05; online 2024-04-03]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Treatment Monitoring of a Patient with Synchronous Metastatic Angiosarcoma and Breast Cancer Using ctDNA.
Vannas C, Escobar M, Österlund T, ..., Fagman H, Ståhlberg A
Int J Mol Sci 25 (7) - [2024-04-04; online 2024-04-04]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population.
Lundtoft C, Knight A, Meadows JRS, ..., Lindblad-Toh K, Dahlqvist J
RMD Open 10 (2) - [2024-04-04; online 2024-04-04]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Proteome profiling of home-sampled dried blood spots reveals proteins of SARS-CoV-2 infections.
Fredolini C, Dodig-Crnković T, Bendes A, ..., Roxhed N, Schwenk JM
Commun Med (Lond) 4 (1) 55 [2024-04-02; online 2024-04-02]
Affinity Proteomics Stockholm [Technology development]
DOI Crossref
Proteome profiling of home-sampled dried blood spots reveals proteins of SARS-CoV-2 infections
Fredolini C, Dodig-Crnković T, Bendes A, ..., Roxhed N, Schwenk JM
Commun Med (Lond) 4 (1) - [2024-04-02; online 2024-04-02]
Autoimmunity and Serology Profiling [Service]
DOI Crossref
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells
Senftleben ML, Bajor A, Hirata E, Abrahamsson S, Brismar H
Biomed. Opt. Express 15 (4) 2281 [2024-04-01; online 2024-03-11]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Microbial succession and denitrifying woodchip bioreactor performance at low water temperatures.
Hellman M, Juhanson J, Wallnäs F, Herbert RB, Hallin S
J Environ Manage 356 (-) 120607 [2024-04-00; online 2024-03-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Diagnostic yield and clinical impact of germline sequencing in children with CNS and extracranial solid tumors-a nationwide, prospective Swedish study.
Tesi B, Robinson KL, Abel F, ..., Taylan F, Nordgren A
Lancet Reg Health Eur 39 (-) 100881 [2024-04-00; online 2024-03-19]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Cancer-associated fibroblasts rewire the estrogen receptor response in luminal breast cancer, enabling estrogen independence.
Reid SE, Pantaleo J, Bolivar P, ..., Seashore-Ludlow B, Pietras K
Oncogene 43 (15) 1113-1126 [2024-04-00; online 2024-02-22]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Defining the contribution of Troy-positive progenitor cells to the mouse esophageal epithelium.
Grommisch D, Wang M, Eenjes E, ..., Giselsson P, Genander M
Dev. Cell - (-) - [2024-03-28; online 2024-03-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
MLL4 binds TET3.
Becht DC, Mohid SA, Lee JE, ..., Zhang Y, Kutateladze TG
Structure - (-) - [2024-03-27; online 2024-03-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comparison and optimization of protocols and whole-genome capture conditions for ancient DNA samples.
Yaka R, Lagerholm VK, Linderholm A, ..., Somel M, Götherström A
BioTechniques - (-) - [2024-03-26; online 2024-03-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner
ElBeck Z, Hossain MB, Siga H, ..., Végvári Á, Betsholtz C
Nat Commun 15 (1) - [2024-03-20; online 2024-03-20]
BioImage Informatics [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Dominance between self-incompatibility alleles determines the mating system of Capsella allopolyploids
Duan T, Zhang Z, Genete M, ..., Castric V, Vekemans X
Evolution Letters - (-) - [2024-03-17; online 2024-03-17]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Influence of divalent cations on the extraction of organic acids in coffee determined by GC-MS and NMR.
Bratthäll T, Figueira J, Nording ML
Heliyon 10 (5) e26625 [2024-03-15; online 2024-02-17]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Biochemical analysis of the endoribonuclease activity of the human mitochondrial topoisomerase 1
Bader CPJ, Kasho E, Forslund JME, Wessels M, Wanrooij PH
- - (-) - [2024-03-15; online 2024-03-15]
Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
A distinctive tumor compartment in pancreatic lobules defined by nascent stroma and classical tumor cell phenotype
Söderqvist S, Viljamaa A, Geyer N, ..., Moro CF, Gerling M
- - (-) - [2024-03-15; online 2024-03-15]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees.
Shi T, Zhang X, Hou Y, ..., Yin T, Wang J
Mol Plant - (-) - [2024-03-13; online 2024-03-13]
NGI Long read [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cardiac biopsies reveal differences in transcriptomics between left and right ventricle in patients with or without diagnostic signs of heart failure.
Frisk C, Das S, Eriksson MJ, ..., Linde C, Persson B
Sci Rep 14 (1) 5811 [2024-03-09; online 2024-03-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Estrogen receptor activation remodels TEAD1 gene expression to alleviate hepatic steatosis.
Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C
Mol. Syst. Biol. - (-) - [2024-03-08; online 2024-03-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Identification of microbial pathogens in Neolithic Scandinavian humans.
Bergfeldt N, Kırdök E, Oskolkov N, ..., Storå J, Götherström A
Sci Rep 14 (1) 5630 [2024-03-07; online 2024-03-07]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The serological immunogenicity of the third and fourth doses of COVID-19 vaccine in patients with inflammatory rheumatic diseases on different biologic or targeted DMARDs: a Swedish nationwide study (COVID-19-REUMA).
Frodlund M, Nived P, Chatzidionysiou K, ..., Klareskog L, Kapetanovic M
Microbiol Spectr - (-) e0298123 [2024-03-05; online 2024-03-05]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Loss of chromosome Y in regulatory T cells.
Mattisson J, Halvardson J, Davies H, ..., Dumanski JP, Forsberg LA
BMC Genomics 25 (1) 243 [2024-03-05; online 2024-03-05]
NGI Single cell [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France.
Simões LG, Peyroteo-Stjerna R, Marchand G, ..., Günther T, Jakobsson M
Proc. Natl. Acad. Sci. U.S.A. 121 (10) e2310545121 [2024-03-05; online 2024-02-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
fhl2b mediates extraocular muscle protection in zebrafish models of muscular dystrophies and its ectopic expression ameliorates affected body muscles.
Dennhag N, Kahsay A, Nissen I, ..., von Hofsten J, Pedrosa Domellöf F
Nat Commun 15 (1) 1950 [2024-03-02; online 2024-03-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The impact of circulating protein levels identified by affinity proteomics on short-term, overall breast cancer risk.
Grassmann F, Mälarstig A, Dahl L, ..., Schwenk JM, Czene K
Br. J. Cancer 130 (4) 620-627 [2024-03-00; online 2023-12-22]
Affinity Proteomics Stockholm [Collaborative]
DOI Crossref
Sorption of pharmaceuticals to foam and aerobic granular sludge with different morphologies
Burzio C, Mohammadi AS, Smith S, ..., Persson F, Wilén BM
Resources, Environment and Sustainability 15 (-) 100149 [2024-03-00; online 2024-03-00]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Wang S, Nikamo P, Laasonen L, ..., Ståhle M, Tapia-Paez I
EMBO Mol Med 16 (3) 596-615 [2024-03-00; online 2024-02-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sheng N, Mårell L, Sitaram RT, ..., Westerlund A, Strömberg N
EBioMedicine 101 (-) 105001 [2024-03-00; online 2024-02-15]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Steward RA, Pruisscher P, Roberts KT, Wheat CW
Heredity (Edinb) 132 (3) 142-155 [2024-03-00; online 2024-01-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Zhigulev A, Norberg Z, Cordier J, ..., Gréen H, Sahlén P
Life Sci. Alliance 7 (3) - [2024-03-00; online 2024-01-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening.
Gezelius H, Enblad AP, Lundmark A, ..., Andersson C, Nordlund J
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NGI Short read [Technology development] NGI Single cell [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Technology development]
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Ås J, Bertulyte I, Norgren N, ..., Wadelius M, Hallberg P
PLoS ONE 19 (2) e0299075 [2024-02-29; online 2024-02-29]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Population genomic analyses reveal that salinity and geographic isolation drive diversification in a free-living protist.
Rengefors K, Annenkova N, Wallenius J, ..., Kremp A, Ahrén D
Sci Rep 14 (1) 4986 [2024-02-29; online 2024-02-29]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sele C, Krupinska E, Andersson Rasmussen A, ..., Fisher SZ, Knecht W
Nucleosides Nucleotides Nucleic Acids - (-) 1-15 [2024-02-29; online 2024-02-29]
Structural Proteomics [Service]
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Kälin C, Piombo E, Bourras S, ..., Elfstrand M, Karlsson M
BMC Plant Biol. 24 (1) 144 [2024-02-28; online 2024-02-28]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Integrated Microscopy Technologies Stockholm [Collaborative]
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scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.
Chen JP, Diekmann C, Wu H, ..., Bienko M, Crosetto N
Nat Commun 15 (1) 1768 [2024-02-27; online 2024-02-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Tumor Predisposing Post-Zygotic Chromosomal Alterations in Bladder Cancer-Insights from Histologically Normal Urothelium.
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Cancers (Basel) 16 (5) - [2024-02-27; online 2024-02-27]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Jiang Z, Zang W, Ericson PGP, ..., Lei F, Qu Y
BMC Biol. 22 (1) 49 [2024-02-27; online 2024-02-27]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Epigenome-wide analysis of frailty: Results from two European twin cohorts.
Mak JKL, Skovgaard AC, Nygaard M, ..., Soerensen M, Jylhävä J
Aging Cell - (-) e14135 [2024-02-27; online 2024-02-27]
NGI SNP genotyping [Service] NGI Short read [Service] National Genomics Infrastructure [Service]
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Intestinal stroma guides monocyte differentiation to macrophages through GM-CSF.
Kvedaraite E, Lourda M, Mouratidou N, ..., Henter JI, Svensson M
Nat Commun 15 (1) 1752 [2024-02-26; online 2024-02-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Xu T, Novotny A, Zamora-Terol S, Hambäck PA, Winder M
Microb. Ecol. 87 (1) 48 [2024-02-26; online 2024-02-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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No link between type I interferon autoantibody positivity and adverse reactions to COVID-19 vaccines.
Yalcinkaya A, Cavalli M, Cederholm A, ..., Wadelius M, Landegren N
NPJ Vaccines 9 (1) 42 [2024-02-22; online 2024-02-22]
Autoimmunity and Serology Profiling [Service]
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The effect of nitrogen source and levels on hybrid aspen tree physiology and wood formation.
Renström A, Choudhary S, Gandla ML, ..., Jämtgård S, Tuominen H
Physiol Plantarum 176 (1) e14219 [2024-02-21; online 2024-02-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Swedish NMR Centre (SNC) [Collaborative]
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Inhibition of Insulin-Regulated Aminopeptidase by Imidazo [1,5-α]pyridines-Synthesis and Evaluation.
Engen K, Lundbäck T, Yadav A, ..., Hallberg M, Larhed M
Int J Mol Sci 25 (5) - [2024-02-21; online 2024-02-21]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
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Clonally heritable gene expression imparts a layer of diversity within cell types.
Mold JE, Weissman MH, Ratz M, ..., Michaëlsson J, Frisén J
Cell Syst 15 (2) 149-165.e10 [2024-02-21; online 2024-02-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos.
Hold K, Lord E, Brealey JC, ..., Martin MD, Dussex N
Sci Rep 14 (1) 4143 [2024-02-20; online 2024-02-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Lymphocytic colitis can be transcriptionally divided into channelopathic and inflammatory lymphocytic colitis.
Bhardwaj A, Münch A, Montague J, ..., Rosenstiel P, Escudero-Hernández C
United European Gastroenterol J - (-) - [2024-02-17; online 2024-02-17]
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Long noncoding RNA plasmacytoma variant translocation 1 is overexpressed in cutaneous squamous cell carcinoma and exon 2 is critical for its oncogenicity.
Li C, Sun C, Mahapatra KD, ..., Sonkoly E, Pivarcsi A
Br J Dermatol 190 (3) 415-426 [2024-02-16; online 2023-11-06]
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Zhang SM, Paulin CBJ, Shu H, ..., Helleday T, Rudd SG
iScience 27 (2) 108907 [2024-02-16; online 2024-01-13]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
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Gene co-expression network analysis reveal core responsive genes in Parascaris univalens tissues following ivermectin exposure.
Dube F, Delhomme N, Martin F, ..., Svärd S, Tydén E
PLoS ONE 19 (2) e0298039 [2024-02-15; online 2024-02-15]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Genetic and environmental contributions to gaze lateralization across social and non-social stimuli in human infants.
Viktorsson C, Portugal AM, Falck-Ytter T
Sci Rep 14 (1) 3668 [2024-02-14; online 2024-02-14]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Chachaj A, Jeziorek M, Dudka I, ..., Kujawa K, Szuba A
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Swedish NMR Centre (SNC) [Collaborative]
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Yildirim Y, Kristensson D, Outomuro D, ..., Sniegula S, Johansson F
BMC Ecol Evol 24 (1) 19 [2024-02-03; online 2024-02-03]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Asymmetric nucleosome PARylation at DNA breaks mediates directional nucleosome sliding by ALC1.
Bacic L, Gaullier G, Mohapatra J, ..., Sabantsev A, Deindl S
Nat Commun 15 (1) 1000 [2024-02-02; online 2024-02-02]
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Xist ribonucleoproteins promote female sex-biased autoimmunity.
Dou DR, Zhao Y, Belk JA, ..., Utz PJ, Chang HY
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Structural and functional insight into the interaction of Clostridioides difficile toxin B and FZD7.
Kinsolving J, Bous J, Kozielewicz P, ..., Dong M, Schulte G
Cell Rep 43 (2) 113727 [2024-02-01; online 2024-02-01]
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Höglund J, Dias G, Olsen RA, ..., Talla V, Backström N
Genome Biol Evol 16 (2) - [2024-02-01; online 2024-02-18]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Recent increase in species-wide diversity after interspecies introgression in the highly endangered Iberian lynx.
Lucena-Perez M, Paijmans JLA, Nocete F, ..., Barlow A, Godoy JA
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles.
Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C
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Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Longo A, Kurta K, Vanhala T, ..., de Koning DJ, Palaiokostas C
Anim Genet 55 (1) 87-98 [2024-02-00; online 2023-11-23]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Fine-scale genetic structure in the orchid Gymnadenia conopsea is not associated with local density of flowering plants.
Sletvold N, Joffard N, Söderquist L
Am. J. Bot. 111 (2) e16273 [2024-02-00; online 2024-01-30]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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EBioMedicine - (-) 105015 [2024-02-00; online 2024-02-00]
Affinity Proteomics Stockholm [Service]
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Batrachochytrium dendrobatidis strain affects transcriptomic response in liver but not skin in latitudinal populations of the common toad (Bufo bufo).
Chondrelli N, Kuehn E, Meurling S, ..., Laurila A, Höglund J
Sci Rep 14 (1) 2495 [2024-01-30; online 2024-01-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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von Beek C, Fahlgren A, Geiser P, ..., Pejler G, Sellin ME
Nat Commun 15 (1) 904 [2024-01-30; online 2024-01-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Single-cell RNA-seq mapping of chicken peripheral blood leukocytes.
Maxwell M, Söderlund R, Härtle S, Wattrang E
BMC Genomics 25 (1) 124 [2024-01-29; online 2024-01-29]
NGI Single cell [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Spatial Transcriptomics in a Case of Follicular Thyroid Carcinoma Reveals Clone-Specific Dysregulation of Genes Regulating Extracellular Matrix in the Invading Front.
Condello V, Paulsson JO, Zedenius J, Näsman A, Juhlin CC
Endocr. Pathol. - (-) - [2024-01-27; online 2024-01-27]
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Sariyar S, Sountoulidis A, Hansen JN, ..., Lundberg E, Ayoglu B
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Spatial Proteomics [Service]
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Whole-genome sequencing in prenatally detected congenital malformations: prospective cohort study in clinical setting.
Westenius E, Conner P, Pettersson M, ..., Lindstrand A, Iwarsson E
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Clinical Genomics Stockholm [Service]
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Meta-analysis of ACE inhibitor-induced angioedema identifies novel risk locus.
Mathey CM, Maj C, Eriksson N, ..., Nöthen MM, Forstner AJ
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Genetic diversity and recent ancestry based on whole-genome sequencing of endangered Swedish cattle breeds.
Harish A, Lopes Pinto FA, Eriksson S, Johansson AM
BMC Genomics 25 (1) 89 [2024-01-22; online 2024-01-22]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton.
Grujčić V, Saarenpää S, Sundh J, ..., Foster RA, Andersson AF
PLoS ONE 19 (1) e0296672 [2024-01-19; online 2024-01-19]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Remodeling of the human skeletal muscle proteome found after long-term endurance training but not after strength training.
Emanuelsson EB, Arif M, Reitzner SM, ..., Sundberg CJ, Chapman MA
iScience 27 (1) 108638 [2024-01-19; online 2023-12-05]
Global Proteomics and Proteogenomics [Service]
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Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals.
Kırdök E, Kashuba N, Damlien H, ..., Aravena A, Götherström A
Sci Rep 13 (1) 22125 [2024-01-18; online 2024-01-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen.
Bergman I, Lindström ES, Sassenhagen I
Microb. Ecol. 87 (1) 33 [2024-01-18; online 2024-01-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Targeting the Main Protease (Mpro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies.
Altincekic N, Jores N, Löhr F, ..., Sreeramulu S, Schwalbe H
ACS Chem. Biol. - (-) - [2024-01-17; online 2024-01-17]
Chemical Biology Consortium Sweden (CBCS) [Service] Swedish NMR Centre (SNC) [Collaborative]
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High-throughput analysis of membrane fluidity unveils a hidden dimension in immune cell states
Andronico LA, Jiang Y, Carannante V, ..., Brodin P, Sezgin E
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Integrated Microscopy Technologies Stockholm [Service]
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Erythroid Differentiation Enhances RNA Mis-Splicing in SF3B1-Mutant Myelodysplastic Syndromes with Ring Sideroblasts.
Moura PL, Mortera-Blanco T, Hofman IJ, ..., Jacobsen SEW, Hellström-Lindberg E
Cancer Res. 84 (2) 211-225 [2024-01-16; online 2023-11-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Apoptosis-mediated ADAM10 activation removes a mucin barrier promoting T cell efferocytosis.
Drexhage LZ, Zhang S, Dupont M, ..., Karaji N, Sattentau QJ
Nat Commun 15 (1) 541 [2024-01-15; online 2024-01-15]
Integrated Microscopy Technologies Stockholm [Service]
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A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile.
Lindelöf L, Rantapää-Dahlqvist S, Lundtoft C, ..., Svenungsson E, Eriksson O
J. Autoimmun. 143 (-) 103166 [2024-01-13; online 2024-01-13]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Profiling of Surface Protein Epitopes on Viral Particles by Multiplex Dual-Reporter Strategy
Sahi M, Andersson S, Mattson C, ..., Chiodi F, Fredolini C
J Vis Exp - (203) - [2024-01-12; online 2024-01-12]
Affinity Proteomics Stockholm [Technology development]
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Furan Distribution as a Severity Indicator upon Organosolv Fractionation of Hardwood Sawdust through a Novel Ternary Solvent System
Thoresen PP, Delgado Vellosillo I, Lange H, ..., Christakopoulos P, Matsakas L
ACS Sustainable Chem. Eng. - (-) - [2024-01-12; online 2024-01-12]
Swedish NMR Centre (SNC) [Service]
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Differential expression and alternative splicing analyses of multiple tissues reveal albinism-associated genes in the Wels catfish (Silurus glanis).
Ozerov MY, Noreikiene K, Kahar S, ..., Gross R, Vasemägi A
Comp Biochem Physiol B Biochem Mol Biol 271 (-) 110941 [2024-01-11; online 2024-01-11]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Colony phase variation switch modulates antimicrobial tolerance and biofilm formation in Acinetobacter baumannii.
Mushtaq F, Nadeem A, Yabrag A, ..., Uhlin BE, Ahmad I
Microbiol Spectr - (-) e0295623 [2024-01-11; online 2024-01-11]
Integrated Microscopy Technologies Umeå [Service]
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Single-cell genomics of a bloom-forming phytoplankton species reveals population genetic structure across continents.
Gollnisch R, Ahrén D, Rengefors K
ISME J 18 (1) - [2024-01-08; online 2024-03-15]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Separating phases of allopolyploid evolution with resynthesized and natural Capsella bursa-pastoris.
Duan T, Sicard A, Glémin S, Lascoux M
Elife 12 (-) - [2024-01-08; online 2024-01-08]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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A pan-genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin.
Biderre-Petit C, Courtine D, Hennequin C, ..., Divne A, Hochart C
Mol Ecol Resour - (-) e13923 [2024-01-08; online 2024-01-08]
Microbial Single Cell Genomics [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sex-limited experimental evolution drives transcriptomic divergence in a hermaphrodite.
Cīrulis A, Nordén AK, Churcher AM, ..., Zadesenets KS, Abbott JK
Genome Biol Evol 16 (1) - [2024-01-05; online 2023-12-29]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Nuclear Hsp104 safeguards the dormant translation machinery during quiescence.
Kohler V, Kohler A, Berglund LL, ..., Andréasson C, Büttner S
Nat Commun 15 (1) 315 [2024-01-05; online 2024-01-05]
Global Proteomics and Proteogenomics [Service]
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METTL3 drives telomere targeting of TERRA lncRNA through m6A-dependent R-loop formation: a therapeutic target for ALT-positive neuroblastoma.
Vaid R, Thombare K, Mendez A, ..., Fischer M, Mondal T
Nucleic Acids Res. - (-) - [2024-01-05; online 2024-01-05]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Humoral immune responses to the monovalent XBB.1.5-adapted BNT162b2 mRNA booster in Sweden.
Marking U, Bladh O, Aguilera K, ..., Sheward DJ, Thålin C
Lancet Infect Dis - (-) - [2024-01-05; online 2024-01-05]
Affinity Proteomics Uppsala [Collaborative]
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METTL17 is an Fe-S cluster checkpoint for mitochondrial translation.
Ast T, Itoh Y, Sadre S, ..., Amunts A, Mootha VK
Mol. Cell - (-) - [2024-01-04; online 2024-01-04]
Cryo-EM [Service]
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Identification of a Notch transcriptomic signature for breast cancer.
Braune EB, Geist F, Tang X, ..., Wienke D, Lendahl U
Breast Cancer Res. 26 (1) 4 [2024-01-03; online 2024-01-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network.
Hunt G, Vaid R, Pirogov S, ..., Reimegård J, Mannervik M
Genome Biol. 25 (1) 2 [2024-01-02; online 2024-01-02]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Functional annotation of a divergent genome using sequence and structure-based similarity.
Svedberg D, Winiger RR, Berg A, ..., Vossbrinck CR, Barandun J
BMC Genomics 25 (1) 6 [2024-01-02; online 2024-01-02]
Bioinformatics Support, Infrastructure and Training [Service]
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A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea.
Latz MAC, Andersson A, Brugel S, ..., Torstensson A, Andersson AF
Sci Data 11 (1) 18 [2024-01-02; online 2024-01-02]
Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Global Transcriptome Analysis Reveals Distinct Phases of the Endothelial Response to TNF.
Struck EC, Belova T, Hsieh PH, ..., Dusart PJ, Butler LM
J. Immunol. 212 (1) 117-129 [2024-01-01; online 2023-11-29]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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A biobased binder of carboxymethyl cellulose, citric acid, chitosan and wheat gluten for nonwoven and paper.
Wennman M, Pinon AC, Svagan AJ, Hellberg M, Hedenqvist MS
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Swedish NMR Centre (SNC) [Collaborative]
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Publications 9.5.0