Publications 2024

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239 publications

PubMed DOI Crossref
Life Science 2.0: reframing the life science sector for 'the benefit on mankind'.
Vallin M, Tomson G, Kampmann B, ..., Wanyenze RK, Ottersen OP
Glob Health Action 17 (1) 2330758 [2024-12-31; online 2024-04-05]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Incontinentia pigmenti underlies thymic dysplasia, autoantibodies to type I IFNs, and viral diseases.
Rosain J, Le Voyer T, Liu X, ..., Anderson MS, Casanova JL
J. Exp. Med. 221 (11) - [2024-11-04; online 2024-10-01]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Local climate, air quality and leaf litter cover shape foliar fungal communities on an urban tree.
Faticov M, Amorim JH, Abdelfattah A, ..., Laforest-Lapointe I, Tack AJM
Ambio 53 (11) 1673-1685 [2024-11-00; online 2024-06-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
IL-7-dependent and -independent lineages of IL-7R-dependent human T cells.
Arango-Franco CA, Ogishi M, Unger S, ..., Casanova JL, Puel A
J. Clin. Invest. 134 (19) - [2024-10-01; online 2024-10-01]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Ebullition dominates methane emissions in stratified coastal waters.
Hermans M, Stranne C, Broman E, ..., Jilbert T, Humborg C
Sci. Total Environ. 945 (-) 174183 [2024-10-01; online 2024-06-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest
Díaz-Navarro S, Díez-Hermano S, Rojo-Guerra MA, ..., Gunther T, Uriarte MH
Journal of Archaeological Science: Reports 58 (-) 104730 [2024-10-00; online 2024-10-00]
Ancient DNA [Service]
PubMed DOI Crossref
High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae.
Khan FK, Sánchez-García M, Johannesson H, Ryberg M
New Phytol. 244 (1) 219-234 [2024-10-00; online 2024-08-07]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Merging multi-omics with proteome integral solubility alteration unveils antibiotic mode of action.
Maity R, Zhang X, Liberati FR, ..., Aínsa JA, Sancho J
Elife 13 (-) - [2024-09-27; online 2024-09-27]
Chemical Proteomics [Collaborative]
DOI Crossref
Chemical Exposomics in Human Plasma by Lipid Removal and Large-Volume Injection Gas Chromatography–High-Resolution Mass Spectrometry
Xie H, Sdougkou K, Bonnefille B, ..., Rantakokko P, Martin JW
Environ. Sci. Technol. - (-) - [2024-09-24; online 2024-09-24]
Exposomics [Technology development]
PubMed DOI Crossref
Determining Marine Biodegradation Kinetics of Chemicals Discharged from Offshore Oil Platforms─Whole Mixture Testing at High Dilutions Increases Environmental Relevance.
Møller MT, Birch H, Sjøholm KK, ..., Papazian S, Mayer P
Environ. Sci. Technol. - (-) - [2024-09-18; online 2024-09-18]
Exposomics [Collaborative]
PubMed DOI Crossref
Longitudinal Exposomics in a Multiomic Wellness Cohort Reveals Distinctive and Dynamic Environmental Chemical Mixtures in Blood.
Sdougkou K, Papazian S, Bonnefille B, ..., Martin LJ, Martin JW
Environ. Sci. Technol. 58 (37) 16302-16315 [2024-09-17; online 2024-09-05]
Exposomics [Collaborative]
PubMed DOI Crossref
Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19.
Li X, Jayaprasad S, Einarsdottir E, ..., Kawakami T, Palacios-Gimenez OM
Sci Data 11 (1) 997 [2024-09-12; online 2024-09-12]
NGI Long read [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Enrichment of Cis-Acting Regulatory Elements in Differentially Methylated Regions Following Lipopolysaccharide Treatment of Bovine Endometrial Epithelial Cells.
Jhamat N, Guo Y, Han J, ..., Andersson G, Niazi A
Int J Mol Sci 25 (18) - [2024-09-11; online 2024-09-11]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Inherited human RelB deficiency impairs innate and adaptive immunity to infection.
Le Voyer T, Maglorius Renkilaraj MRL, Moriya K, ..., Tangye SG, Puel A
Proc. Natl. Acad. Sci. U.S.A. 121 (37) e2321794121 [2024-09-10; online 2024-09-04]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma.
Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y
J. Clin. Invest. - (-) - [2024-09-10; online 2024-09-10]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Immune system adaptation during gender-affirming testosterone treatment
Tadepally L, Consiglio C, Sardh F, ..., Landegren N, Brodin P
Nature 633 (-) 155-164 [2024-09-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Temporal dynamics of faster neo-Z evolution in butterflies.
Höök L, Vila R, Wiklund C, Backström N
Evolution 78 (9) 1554-1567 [2024-09-03; online 2024-05-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
ADAR3 modulates neuronal differentiation and regulates mRNA stability and translation.
Karlström V, Sagredo EA, Planells J, ..., Visa N, Öhman M
Nucleic Acids Res. - (-) - [2024-09-01; online 2024-09-01]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Speciation in savanna birds in South America: The case of the Least Nighthawk Chordeiles pusillus (Aves: Caprimulgidae) in and out of the Amazon.
Fernandes AM, Cohn-Haft M, Fábio Silveira L, ..., Nascimento N, Olsson U
Mol. Phylogenet. Evol. 198 (-) 108117 [2024-09-00; online 2024-06-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
New finds of European bison identified through the systematic DNA-based species identification of archaeological remains of large bovines from Scandinavia
Rosengren E, Rossi C, Heino MT, Sinding MHS
Journal of Archaeological Science: Reports 57 (-) 104668 [2024-09-00; online 2024-09-00]
Ancient DNA [Service]
PubMed DOI Crossref
Immune system adaptation during gender-affirming testosterone treatment.
Lakshmikanth T, Consiglio C, Sardh F, ..., Landegren N, Brodin P
Nature 633 (8028) 155-164 [2024-09-00; online 2024-09-04]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Plastome evolution in Santalales involves relaxed selection prior to loss of ndh genes and major boundary shifts of the inverted repeat.
Edlund M, Anderson BM, Su HJ, ..., Nickrent DL, Petersen G
Ann. Bot. - (-) - [2024-08-30; online 2024-08-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Five centuries of consanguinity, isolation, health, and conflict in Las Gobas: A Northern Medieval Iberian necropolis.
Rodríguez-Varela R, Yaka R, Pochon Z, ..., Azkarate A, Götherström A
Sci Adv 10 (35) eadp8625 [2024-08-30; online 2024-08-28]
Ancient DNA [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
DNA methylation governs the sensitivity of repeats to restriction by the HUSH-MORC2 corepressor.
Pandiloski N, Horváth V, Karlsson O, ..., Jakobsson J, Douse CH
Nat Commun 15 (1) 7534 [2024-08-30; online 2024-08-30]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries
Akaberi D, Pourghasemi Lati M, Krambrich J, ..., Verho O, Lennerstrand J
Antimicrob Agents Chemother - (-) - [2024-08-28; online 2024-08-28]
Drug Discovery and Development (DDD) [Collaborative]
PubMed DOI Crossref
Massively parallel analysis of single-molecule dynamics on next-generation sequencing chips.
Aguirre Rivera J, Mao G, Sabantsev A, ..., Jinek M, Deindl S
Science 385 (6711) 892-898 [2024-08-23; online 2024-08-22]
NGI Short read [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Surface-Shaving of Staphylococcus aureus Strains and Quantitative Proteomic Analysis Reveal Differences in Protein Abundance of the Surfaceome.
Karlsson A, Alarcón LA, Piñeiro-Iglesias B, ..., Jin T, Karlsson R
Microorganisms 12 (8) - [2024-08-21; online 2024-08-21]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Gel-Assisted Proteome Position Integral Shift Assay Returns Molecular Weight to Shotgun Proteomics and Identifies Caspase 3 Substrates.
Meng Z, Saei AA, Gharibi H, ..., Gaetani M, Zubarev RA
Anal. Chem. 96 (33) 13533-13541 [2024-08-20; online 2024-08-07]
Chemical Proteomics [Technology development]
PubMed DOI Crossref
Androgen receptor pathway inhibitors and taxanes in metastatic prostate cancer: an outcome-adaptive randomized platform trial.
De Laere B, Crippa A, Discacciati A, ..., Grönberg H, Lindberg J
Nat. Med. - (-) - [2024-08-20; online 2024-08-20]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Examining the liver-pancreas crosstalk reveals a role for the molybdenum cofactor in β-cell regeneration
Karampelias C, Băloiu B, Rathkolb B, ..., Hrabě de Angelis M, Andersson O
Life Science Alliance 7 (11) e202402771 [2024-08-19]
NGI Short read NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Origin, structure, and composition of the spider major ampullate silk fiber revealed by genomics, proteomics, and single-cell and spatial transcriptomics.
Sonavane S, Hassan S, Chatterjee U, ..., Reimegård J, Rising A
Sci Adv 10 (33) eadn0597 [2024-08-16; online 2024-08-14]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Spatial omics [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Motor innervation directs the correct development of the mouse sympathetic nervous system.
Erickson AG, Motta A, Kastriti ME, ..., Bonanomi D, Adameyko I
Nat Commun 15 (1) 7065 [2024-08-16; online 2024-08-16]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Visualization and analysis of medically relevant tandem repeats in nanopore sequencing of control cohorts with pathSTR.
De Coster W, Hoijer I, Bruggeman I, ..., Ameur A, Rademakers R
Genome Res. - (-) - [2024-08-15; online 2024-08-15]
NGI Long read [Technology development] NGI Uppsala (Uppsala Genome Center) [Technology development] National Genomics Infrastructure [Technology development]
PubMed DOI Crossref
READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics.
Alaçamlı E, Naidoo T, Güler MN, ..., Malmström H, Günther T
Genome Biol. 25 (1) 216 [2024-08-12; online 2024-08-12]
Ancient DNA [Technology development]
PubMed DOI Crossref
Multifaceted Proteome Analysis at Solubility, Redox, and Expression Dimensions for Target Identification.
Saei AA, Lundin A, Lyu H, ..., Gygi SP, Zubarev RA
Adv Sci (Weinh) - (-) e2401502 [2024-08-09; online 2024-08-09]
Chemical Proteomics [Technology development]
PubMed DOI Crossref
AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine-associated receptor 1.
Díaz-Holguín A, Saarinen M, Vo DD, ..., Carlsson J, Svenningsson P
Sci Adv 10 (32) eadn1524 [2024-08-09; online 2024-08-07]
Drug Discovery and Development (DDD) [Service]
DOI Crossref
JAK inhibition decreases the autoimmune burden in Down syndrome
Rachubinski AL, Wallace E, Gurnee E, ..., Norris DA, Espinosa JM
- - (-) - [2024-08-08; online 2024-08-08]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Few chemoreceptor genes in the ambrosia beetle Trypodendron lineatum may reflect its specialized ecology.
Biswas T, Vogel H, Biedermann PHW, ..., Yuvaraj JK, Andersson MN
BMC Genomics 25 (1) 764 [2024-08-06; online 2024-08-06]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
AssemblyQC: a Nextflow pipeline for reproducible reporting of assembly quality.
Rashid U, Wu C, Shiller J, ..., Thomson S, Deng CH
Bioinformatics 40 (8) - [2024-08-02; online 2024-07-30]
Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development]
PubMed DOI Crossref
LRPPRC and SLIRP synergize to maintain sufficient and orderly mammalian mitochondrial translation.
Rubalcava-Gracia D, Bubb K, Levander F, ..., Koolmeister C, Larsson N
Nucleic Acids Res. - (-) - [2024-08-01; online 2024-08-01]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins.
Unneberg P, Larsson M, Olsson A, ..., Meyer B, Wallberg A
Nat Commun 15 (1) 6297 [2024-08-01; online 2024-08-01]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]
DOI Crossref
Fungal communities associated with Picea abiesPinus sylvestris and Larix sp. seeds of different geographic origin: Implications for disease management
Larsson R, Menkis A, Olson Å
For. Path. 54 (4) - [2024-08-00; online 2024-08-05]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing.
Lysenkova Wiklander M, Arvidsson G, Bunikis I, ..., Ameur A, Nordlund J
Life Sci. Alliance 7 (8) - [2024-08-00; online 2024-05-22]
NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
A genetic-epigenetic interplay at 1q21.1 locus underlies CHD1L-mediated vulnerability to primary progressive multiple sclerosis.
Pahlevan Kakhki M, Giordano A, Starvaggi Cucuzza C, ..., Kular L, Jagodic M
Nat Commun 15 (1) 6419 [2024-07-30; online 2024-07-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Hybridization in birds-of-paradise: Widespread ancestral gene flow despite strong sexual selection in a lek-mating system.
Blom MPK, Peona V, Prost S, ..., Suh A, Irestedt M
iScience 27 (7) 110300 [2024-07-19; online 2024-06-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Insights into mechanisms of MALT1 allostery from NMR and AlphaFold dynamic analyses.
Wallerstein J, Han X, Levkovets M, ..., Agback T, Orekhov V
Commun Biol 7 (1) 868 [2024-07-16; online 2024-07-16]
Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Enhancing Molecular Characterization of Dissolved Organic Matter by Integrative Direct Infusion and Liquid Chromatography Nontargeted Workflows.
Patrone J, Vila-Costa M, Dachs J, ..., Gago-Ferrero P, Gil-Solsona R
Environ. Sci. Technol. 58 (28) 12454-12466 [2024-07-16; online 2024-07-03]
Exposomics [Collaborative]
PubMed DOI Crossref
Temporal dynamics of woolly mammoth genome erosion prior to extinction.
Dehasque M, Morales HE, Díez-Del-Molino D, ..., Vartanyan S, Dalén L
Cell 187 (14) 3531-3540.e13 [2024-07-11; online 2024-06-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Seroepidemiological assessment of the spread of SARS-CoV-2 among 25 and 28 year-old adult women in Finland between March 2020-June 2022.
Gray P, Eriksson T, Skoglund L, ..., Dillner J, Lehtinen M
PLoS ONE 19 (7) e0305285 [2024-07-11; online 2024-07-11]
Autoimmunity and Serology Profiling [Collaborative]
PubMed DOI Crossref
Inverted triplications formed by iterative template switches generate structural variant diversity at genomic disorder loci.
Grochowski CM, Bengtsson JD, Du H, ..., Lupski JR, Carvalho CMB
Cell Genomics 4 (7) 100590 [2024-07-10; online 2024-06-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Spinocerebellar ataxia type 4 is caused by a GGC expansion in the ZFHX3 gene and is associated with prominent dysautonomia and motor neuron signs.
Paucar M, Nilsson D, Engvall M, ..., Wedell A, Svenningsson P
J. Intern. Med. - (-) - [2024-07-07; online 2024-07-07]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
DOI Crossref
eLife assessment: Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding
Boal AK
- - (-) - [2024-07-05; online 2024-07-05]
Cryo-EM [Service] Structural Proteomics [Service]
PubMed DOI Crossref
Discovery of a novel inhibitor of macropinocytosis with antiviral activity.
Porebski B, Christ W, Corman A, ..., Hühn D, Fernandez-Capetillo O
Mol Ther - (-) - [2024-07-02; online 2024-07-02]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
DOI Crossref
CRISPR-Cas9 Knockout Screens Identify DNA Damage Response Pathways and BTK as Essential for Cisplatin Response in Diffuse Large B-Cell Lymphoma
Issa II, Due H, Brøndum RF, ..., Schmierer B, Dybkær K
Cancers (Basel) 16 (13) 2437 [2024-07-02; online 2024-07-02]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Carboxyl-group compounds activate voltage-gated potassium channels via a distinct mechanism.
Rönnelid O, Elinder F
J. Gen. Physiol. 156 (7) - [2024-07-01; online 2024-06-04]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Cancer Core Europe: Leveraging Institutional Synergies to Advance Oncology Research and Care Globally.
Carmona J, Chavarria E, Donoghue K, ..., Zwart W, Tabernero J
Cancer Discov 14 (7) 1147-1153 [2024-07-01; online 2024-06-13]
Clinical Genomics Stockholm [Collaborative]
PubMed DOI Crossref
Detection and quantification of Na,K-ATPase dimers in the plasma membrane of living cells by FRET-FCS.
Nordahl L, Akkuratov EE, Heimgärtner J, ..., Wennmalm S, Brismar H
Biochimica et Biophysica Acta (BBA) - General Subjects 1868 (7) 130619 [2024-07-00; online 2024-04-20]
Integrated Microscopy Technologies Stockholm [Collaborative]
DOI Crossref
Membrane topography and the overestimation of protein clustering in single molecule localisation microscopy – identification and correction
Adler J, Bernhem K, Parmryd I
Commun Biol 7 (1) - [2024-06-29; online 2024-06-29]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis.
Edelbroek B, Kjellin J, Jerlström-Hultqvist J, Koskiniemi S, Söderbom F
Sci Data 11 (1) 678 [2024-06-22; online 2024-06-22]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cryo-electron microscopy reveals hydrogen positions and water networks in photosystem II.
Hussein R, Graça A, Forsman J, ..., Zouni A, Schröder WP
Science 384 (6702) 1349-1355 [2024-06-21; online 2024-06-20]
Cryo-EM [Collaborative]
PubMed DOI Crossref
Completed genome and emergence scenario of the multidrug-resistant nosocomial pathogen Staphylococcus epidermidis ST215.
Kellgren T, Dwibedi C, Widerström M, ..., Rydén P, Johansson A
BMC Microbiol. 24 (1) 215 [2024-06-19; online 2024-06-19]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comprehensive Genomic Profiling Alters Clinical Diagnoses in a Significant Fraction of Tumors Suspicious of Sarcoma.
Öfverholm I, Wallander K, Haglund C, ..., Lin Y, Haglund de Flon F
Clin. Cancer Res. 30 (12) 2647-2658 [2024-06-14; online 2024-04-04]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
descSPIM: an affordable and easy-to-build light-sheet microscope optimized for tissue clearing techniques.
Otomo K, Omura T, Nozawa Y, ..., Brismar H, Susaki EA
Nat Commun 15 (1) 4941 [2024-06-12; online 2024-06-12]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Integrative transcriptomic and proteomic profiling of the effects of cell confluency on gene expression.
Lobo V, Shcherbinina E, Westholm JO, ..., Anastasakis DG, Sarshad AA
Sci Data 11 (1) 617 [2024-06-12; online 2024-06-12]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice.
Masarapu Y, Cekanaviciute E, Andrusivova Z, ..., Costes SV, Giacomello S
Nat Commun 15 (1) 4778 [2024-06-11; online 2024-06-11]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Distinct origin and region-dependent contribution of stromal fibroblasts to fibrosis following traumatic injury in mice.
Holl D, Hau WF, Julien A, ..., Dias DO, Göritz C
Nat. Neurosci. - (-) - [2024-06-07; online 2024-06-07]
Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Climate change induces shifts in coastal Baltic Sea surface water microorganism stress and photosynthesis gene expression.
Seidel L, Broman E, Ståhle M, ..., Ketzer M, Dopson M
Front Microbiol 15 (-) 1393538 [2024-06-07; online 2024-06-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers.
Zhang Y, Xie G, Lee JE, ..., Ge K, Kutateladze TG
Nat Commun 15 (1) 4883 [2024-06-07; online 2024-06-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Structural diversity of Arc oligomers within the excitatory synapse
Damenti M, Coceano G, Mendes Silva M, ..., Jungmann R, Testa I
- - (-) - [2024-06-06; online 2024-06-06]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.
Wernersson E, Gelali E, Girelli G, ..., Crosetto N, Bienko M
Nat. Methods - (-) - [2024-06-06; online 2024-06-06]
Integrated Microscopy Technologies Stockholm [Collaborative] Spatial Proteomics [Service]
PubMed DOI Crossref
Detection of rare variants among nuclei populating the arbuscular mycorrhizal fungal model species Rhizophagus irregularis DAOM197198.
Manyara D, Sánchez-García M, Montoliu-Nerin M, Rosling A
G3 (Bethesda) 14 (6) - [2024-06-05; online 2024-04-24]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Multimodal Mass Spectrometry Identifies a Conserved Protective Epitope in S. pyogenes Streptolysin O
Tang D, Gueto-Tettay C, Hjortswang E, ..., Malmström L, Malmström J
Anal. Chem. 96 (22) 9060-9068 [2024-06-04; online 2024-05-03]
Structural Proteomics [Technology development]
PubMed DOI Crossref
Mini-heterochromatin domains constrain the cis-regulatory impact of SVA transposons in human brain development and disease.
Horváth V, Garza R, Jönsson ME, ..., Douse CH, Jakobsson J
Nat. Struct. Mol. Biol. - (-) - [2024-06-04; online 2024-06-04]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ancient Sheep Genomes Reveal Four Millennia of North European Short-Tailed Sheep in the Baltic Sea Region.
Larsson MNA, Morell Miranda P, Pan L, ..., Storå J, Günther T
Genome Biol Evol 16 (6) - [2024-06-04; online 2024-05-25]
Ancient DNA [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phylogenomic analysis of Stylops reveals the evolutionary history of a Holarctic Strepsiptera radiation parasitizing wild bees.
Lähteenaro M, Benda D, Straka J, Nylander JAA, Bergsten J
Mol. Phylogenet. Evol. 195 (-) 108068 [2024-06-00; online 2024-03-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Childhood screening for type 1 diabetes comparing automated multiplex Antibody Detection by Agglutination-PCR (ADAP) with single plex islet autoantibody radiobinding assays.
Lind A, Freyhult E, de Jesus Cortez F, ..., Lernmark Å, Better Diabetes Diagnosis (BDD) study group
EBioMedicine 104 (-) 105144 [2024-06-00; online 2024-05-08]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Blood biomarkers of Alzheimer's disease in the community: Variation by chronic diseases and inflammatory status.
Valletta M, Vetrano DL, Rizzuto D, ..., Fratiglioni L, Grande G
Alzheimers Dement 20 (6) 4115-4125 [2024-06-00; online 2024-05-08]
Affinity Proteomics Stockholm [Collaborative]
DOI Crossref
A combination of long and short read genomics reveals frequent p-arm breakpoints within chromosome 21 complex genomic rearrangements
Schuy J, Sæther KB, Lisfeld J, ..., Eisfeldt J, Lindstrand A
Genetics in Medicine Open - (-) 101863 [2024-06-00; online 2024-06-00]
NGI Long read [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
PIK3CA mutations in endocrine-resistant breast cancer.
Schagerholm C, Robertson S, Toosi H, Sifakis EG, Hartman J
Sci Rep 14 (1) 12542 [2024-05-31; online 2024-05-31]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
NGS method for parallel processing of high quality, damaged or fragmented input material using target enrichment.
Lyander A, Gellerbring A, Hägglund M, Elhami K, Wirta V
PLoS ONE 19 (5) e0304411 [2024-05-29; online 2024-05-29]
Clinical Genomics Stockholm [Technology development]
PubMed DOI Crossref
Species-specific dynamics may cause deviations from general biogeographical predictions - evidence from a population genomics study of a New Guinean endemic passerine bird family (Melampittidae).
Müller IA, Thörn F, Rajan S, ..., Jønsson KA, Irestedt M
PLoS ONE 19 (5) e0293715 [2024-05-23; online 2024-05-23]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae.
Thureborn O, Wikström N, Razafimandimbison SG, Rydin C
PLoS ONE 19 (5) e0302365 [2024-05-20; online 2024-05-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
MDM2 amplification in rod-shaped chromosomes provides clues to early stages of circularized gene amplification in liposarcoma.
Sydow S, Piccinelli P, Mitra S, ..., Spierings D, Mertens F
Commun Biol 7 (1) 606 [2024-05-20; online 2024-05-20]
NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Retron-Eco1 assembles NAD+-hydrolyzing filaments that provide immunity against bacteriophages.
Carabias A, Camara-Wilpert S, Mestre MR, ..., Pinilla-Redondo R, Montoya G
Mol. Cell - (-) - [2024-05-18; online 2024-05-18]
Cryo-EM [Service]
PubMed DOI Crossref
Complex genetic architecture of the chicken Growth1 QTL region.
Ou JH, Rönneburg T, Carlborg Ö, ..., Siegel PB, Rubin CJ
PLoS ONE 19 (5) e0295109 [2024-05-13; online 2024-05-13]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring.
Mohamadnejad Sangdehi F, Jamsandekar MS, Enbody ED, Pettersson ME, Andersson L
BMC Genomics 25 (1) 459 [2024-05-10; online 2024-05-10]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Colonial-driven extinction of the blue antelope despite genomic adaptation to low population size.
Hempel E, Faith JT, Preick M, ..., Westbury MV, Hofreiter M
Curr. Biol. 34 (9) 2020-2029.e6 [2024-05-06; online 2024-04-12]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Meiotic drive against chromosome fusions in butterfly hybrids.
Boman J, Wiklund C, Vila R, Backström N
Chromosome Res. 32 (2) 7 [2024-05-04; online 2024-05-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genetic Causes and Genomic Consequences of Breakdown of Distyly in Linum trigynum.
Gutiérrez-Valencia J, Zervakis PI, Postel Z, ..., Arroyo J, Slotte T
Mol. Biol. Evol. 41 (5) - [2024-05-03; online 2024-05-06]
NGI Long read [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
DOI Crossref
Growth and mortality rates of picophytoplankton in the Baltic Sea Proper
Alegria Zufia J, Laber C, Legrand C, Lindehoff E, Farnelid H
Mar. Ecol. Prog. Ser. 735 (-) 63-76 [2024-05-02; online 2024-05-02]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sex-biased gene expression during neural differentiation of human embryonic stem cells
Pottmeier P, Nikolantonaki D, Lanner F, Peuckert C, Jazin E
Front Cell Dev Biol 12 (-) - [2024-05-01; online 2024-05-01]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Male-transmitted transgenerational effects of the herbicide linuron on DNA methylation profiles in Xenopus tropicalis brain and testis.
Roza M, Eriksson ANM, Svanholm S, Berg C, Karlsson O
Sci. Total Environ. 923 (-) 170949 [2024-05-01; online 2024-02-15]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Chromatin accessibility during human first-trimester neurodevelopment.
Mannens CCA, Hu L, Lönnerberg P, ..., Posthuma D, Linnarsson S
Nature - (-) - [2024-05-01; online 2024-05-01]
NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Head-to-head comparison of relevant cell sources of small extracellular vesicles for cardiac repair: Superiority of embryonic stem cells.
González-King H, Rodrigues PG, Albery T, ..., Wang QD, Jennbacken K
J Extracell Vesicles 13 (5) e12445 [2024-05-00; online 2024-05-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Ectomycorrhizal fungi are more sensitive to high soil nitrogen levels in forests exposed to nitrogen deposition.
Jörgensen K, Clemmensen KE, Wallander H, Lindahl BD
New Phytol. 242 (4) 1725-1738 [2024-05-00; online 2024-01-11]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Atağ G, Kaptan D, Yüncü E, ..., Hadjisterkotis E, Somel M
Genome Biol Evol - (-) - [2024-04-27; online 2024-04-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Loss of NEDD8 in cancer cells causes vulnerability to immune checkpoint blockade in triple-negative breast cancer.
Papakyriacou I, Kutkaite G, Rúbies Bedós M, ..., Menden MP, Mao Y
Nat Commun 15 (1) 3581 [2024-04-27; online 2024-04-27]
CRISPR Functional Genomics [Service]
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Phenotypic characterization and candidate gene analysis of a short kernel and brassinosteroid insensitive mutant from hexaploid oat (Avena sativa).
Tsardakas Renhuldt N, Bentzer J, Ahrén D, Marmon S, Sirijovski N
Front Plant Sci 15 (-) 1358490 [2024-04-26; online 2024-04-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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N-glycoproteomic analyses of human intestinal enteroids, varying in histo-blood group geno- and phenotypes, reveal a wide repertoire of fucosylated glycoproteins.
Nilsson J, Rimkute I, Sihlbom C, ..., Estes MK, Larson G
Glycobiology 34 (6) - [2024-04-24; online 2024-04-09]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue.
Zhang N, Harbers L, Simonetti M, ..., Bienko M, Crosetto N
Nat Commun 15 (1) 3475 [2024-04-24; online 2024-04-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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A chemical inhibitor of IST1-CHMP1B interaction impairs endosomal recycling and induces noncanonical LC3 lipidation.
Knyazeva A, Li S, Corkery DP, ..., Waldmann H, Wu Y
Proc. Natl. Acad. Sci. U.S.A. 121 (17) e2317680121 [2024-04-23; online 2024-04-18]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
HIV-2 mediated effects on target and bystander cells induce plasma proteome remodeling.
Johansson E, Nazziwa J, Freyhult E, ..., Jansson M, SWEGUB CORE group
iScience 27 (4) 109344 [2024-04-19; online 2024-02-28]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Radiolabeled 15-mer peptide internalization is mediated by megalin (LRP2 receptor) in a CRISPR/Cas9-based LRP2 knockout human kidney cell model.
Durinova A, Smutna L, Barta P, ..., Pavek P, Trejtnar F
EJNMMI Radiopharm Chem 9 (1) 32 [2024-04-18; online 2024-04-18]
CRISPR Functional Genomics [Collaborative]
PubMed DOI Crossref
Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation.
Ten Berk de Boer E, Ameur A, Bunikis I, ..., Eisfeldt J, Lindstrand A
Sci Rep 14 (1) 9000 [2024-04-18; online 2024-04-18]
NGI Long read [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Effects of bottom trawling and environmental factors on benthic bacteria, meiofauna and macrofauna communities and benthic ecosystem processes.
Bradshaw C, Iburg S, Morys C, ..., Jonsson P, Nascimento FJA
Sci. Total Environ. 921 (-) 171076 [2024-04-15; online 2024-02-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Growth-regulated co-occupancy of Mediator and Lsm3 at intronic ribosomal protein genes.
Abdel-Fattah WR, Carlsson M, Hu G, ..., Ronne H, Björklund S
Nucleic Acids Res. - (-) - [2024-04-13; online 2024-04-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Dual molecule targeting HDAC6 leads to intratumoral CD4+ cytotoxic lymphocytes recruitment through MHC-II upregulation on lung cancer cells.
Ducellier S, Demeules M, Letribot B, ..., Nascimento M, Apcher S
J Immunother Cancer 12 (4) - [2024-04-11; online 2024-04-11]
Chemical Proteomics [Collaborative]
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Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology.
Kukanja P, Langseth CM, Rubio Rodríguez-Kirby LA, ..., Nilsson M, Castelo-Branco G
Cell 187 (8) 1990-2009.e19 [2024-04-11; online 2024-03-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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A time course analysis through diapause reveals dynamic temporal patterns of microRNAs associated with endocrine regulation in the butterfly Pieris napi.
Roberts KT, Steward RA, Süess P, Lehmann P, Wheat CW
Mol. Ecol. - (-) e17348 [2024-04-10; online 2024-04-10]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Exploring the short linear motif-mediated protein-protein interactions of CrkL through ProP-PD.
Pagano L, Simonetti L, Pennacchietti V, ..., Ivarsson Y, Gianni S
Biochem. Biophys. Res. Commun. 703 (-) 149658 [2024-04-09; online 2024-02-07]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Deletion of the TMEM30A gene enables leukemic cell evasion of NK cell cytotoxicity.
Kristenson L, Badami C, Ljungberg A, ..., Tang KW, Thorén FB
Proc. Natl. Acad. Sci. U.S.A. 121 (15) e2316447121 [2024-04-09; online 2024-04-01]
CRISPR Functional Genomics [Service]
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Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria.
Huseby DL, Cao S, Zamaratski E, ..., Hughes D, Karlén A
Proc. Natl. Acad. Sci. U.S.A. 121 (15) e2317274121 [2024-04-09; online 2024-04-05]
Drug Discovery and Development (DDD) [Collaborative]
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A phenotypic screening approach to target p60AmotL2-expressing invasive cancer cells.
Fonseca P, Cui W, Struyf N, ..., Östling P, Holmgren L
J. Exp. Clin. Cancer Res. 43 (1) 107 [2024-04-09; online 2024-04-09]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Functional redundancy revealed by the deletion of the mimivirus GMC-oxidoreductase genes.
Alempic JM, Bisio H, Villalta A, ..., Couté Y, Abergel C
Microlife 5 (-) uqae006 [2024-04-05; online 2024-04-05]
Cryo-EM [Service]
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Adaptive introgression reveals the genetic basis of a sexually selected syndrome in wall lizards.
Feiner N, Yang W, Bunikis I, While GM, Uller T
Sci Adv 10 (14) eadk9315 [2024-04-05; online 2024-04-03]
NGI Long read [Collaborative] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Treatment Monitoring of a Patient with Synchronous Metastatic Angiosarcoma and Breast Cancer Using ctDNA.
Vannas C, Escobar M, Österlund T, ..., Fagman H, Ståhlberg A
Int J Mol Sci 25 (7) - [2024-04-04; online 2024-04-04]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population.
Lundtoft C, Knight A, Meadows JRS, ..., Lindblad-Toh K, Dahlqvist J
RMD Open 10 (2) - [2024-04-04; online 2024-04-04]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Proteome profiling of home-sampled dried blood spots reveals proteins of SARS-CoV-2 infections.
Fredolini C, Dodig-Crnković T, Bendes A, ..., Roxhed N, Schwenk JM
Commun Med (Lond) 4 (1) 55 [2024-04-02; online 2024-04-02]
Affinity Proteomics Stockholm [Technology development] Autoimmunity and Serology Profiling [Service]
DOI Crossref
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells
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Biomed. Opt. Express 15 (4) 2281 [2024-04-01; online 2024-03-11]
Integrated Microscopy Technologies Stockholm [Service]
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Microbial succession and denitrifying woodchip bioreactor performance at low water temperatures.
Hellman M, Juhanson J, Wallnäs F, Herbert RB, Hallin S
J Environ Manage 356 (-) 120607 [2024-04-00; online 2024-03-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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High-throughput measurement of the content and properties of nano-sized bioparticles with single-particle profiler.
Sych T, Schlegel J, Barriga HMG, ..., Stevens MM, Sezgin E
Nat. Biotechnol. 42 (4) 587-590 [2024-04-00; online 2023-06-12]
Integrated Microscopy Technologies Stockholm [Service]
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Habitat is more important than climate for structuring soil fungal communities associated in truffle sites.
Piñuela Y, Alday JG, Oliach D, ..., Peter M, Bonet JA
Fungal Biol 128 (2) 1724-1734 [2024-04-00; online 2024-02-24]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Estrogen receptor activation remodels TEAD1 gene expression to alleviate hepatic steatosis.
Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C
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Integrated Microscopy Technologies Stockholm [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Diagnostic yield and clinical impact of germline sequencing in children with CNS and extracranial solid tumors-a nationwide, prospective Swedish study.
Tesi B, Robinson KL, Abel F, ..., Taylan F, Nordgren A
Lancet Reg Health Eur 39 (-) 100881 [2024-04-00; online 2024-03-19]
Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Cancer-associated fibroblasts rewire the estrogen receptor response in luminal breast cancer, enabling estrogen independence.
Reid SE, Pantaleo J, Bolivar P, ..., Seashore-Ludlow B, Pietras K
Oncogene 43 (15) 1113-1126 [2024-04-00; online 2024-02-22]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
DOI Crossref
VISION — an open-source software for automated multi-dimensional image analysis of cellular biophysics
Weber F, Iskrak S, Ragaller F, ..., Sezgin E, Andronico LA
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Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Defining the contribution of Troy-positive progenitor cells to the mouse esophageal epithelium.
Grommisch D, Wang M, Eenjes E, ..., Giselsson P, Genander M
Dev. Cell - (-) - [2024-03-28; online 2024-03-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
MLL4 binds TET3.
Becht DC, Mohid SA, Lee JE, ..., Zhang Y, Kutateladze TG
Structure - (-) - [2024-03-27; online 2024-03-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Effects of microgravity on neural crest stem cells.
Han Y, Barasa P, Zeger L, ..., Fredriksson R, Kozlova EN
Front. Neurosci. 18 (-) 1379076 [2024-03-27; online 2024-03-27]
NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Comparison and optimization of protocols and whole-genome capture conditions for ancient DNA samples.
Yaka R, Lagerholm VK, Linderholm A, ..., Somel M, Götherström A
BioTechniques - (-) - [2024-03-26; online 2024-03-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Abstract 2025: Zeb1 downregulation sensitizes pancreatic cancer-associated fibroblasts to killing by oncolytic reovirus through upregulation of the reovirus receptor junction adhesion molecule A
Dam N, Harryvan TJ, Schmierer B, Hawinkels LJAC, Kemp V
Cancer Res. 84 (6_Supplement) 2025-2025 [2024-03-22; online 2024-03-22]
CRISPR Functional Genomics [Service]
DOI Crossref
Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner
ElBeck Z, Hossain MB, Siga H, ..., Végvári Á, Betsholtz C
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BioImage Informatics [Service] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
DOI Crossref
Dominance between self-incompatibility alleles determines the mating system of Capsella allopolyploids
Duan T, Zhang Z, Genete M, ..., Castric V, Vekemans X
Evolution Letters - (-) - [2024-03-17; online 2024-03-17]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Influence of divalent cations on the extraction of organic acids in coffee determined by GC-MS and NMR.
Bratthäll T, Figueira J, Nording ML
Heliyon 10 (5) e26625 [2024-03-15; online 2024-02-17]
Swedish NMR Centre (SNC) [Collaborative]
DOI Crossref
Biochemical analysis of the endoribonuclease activity of the human mitochondrial topoisomerase 1
Bader CPJ, Kasho E, Forslund JME, Wessels M, Wanrooij PH
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Chemical Biology Consortium Sweden (CBCS) [Service]
DOI Crossref
A distinctive tumor compartment in pancreatic lobules defined by nascent stroma and classical tumor cell phenotype
Söderqvist S, Viljamaa A, Geyer N, ..., Moro CF, Gerling M
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CRISPR Functional Genomics [Service]
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The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees.
Shi T, Zhang X, Hou Y, ..., Yin T, Wang J
Mol Plant - (-) - [2024-03-13; online 2024-03-13]
NGI Long read [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Neutralizing IFN-γ autoantibodies are rare and pathogenic in HLA-DRB1*15:02 or 16:02 individuals.
Peel JN, Yang R, Le Voyer T, ..., Ku CL, Casanova JL
J. Clin. Invest. 134 (8) - [2024-03-12; online 2024-03-12]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Cardiac biopsies reveal differences in transcriptomics between left and right ventricle in patients with or without diagnostic signs of heart failure.
Frisk C, Das S, Eriksson MJ, ..., Linde C, Persson B
Sci Rep 14 (1) 5811 [2024-03-09; online 2024-03-09]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Identification of microbial pathogens in Neolithic Scandinavian humans.
Bergfeldt N, Kırdök E, Oskolkov N, ..., Storå J, Götherström A
Sci Rep 14 (1) 5630 [2024-03-07; online 2024-03-07]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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The serological immunogenicity of the third and fourth doses of COVID-19 vaccine in patients with inflammatory rheumatic diseases on different biologic or targeted DMARDs: a Swedish nationwide study (COVID-19-REUMA).
Frodlund M, Nived P, Chatzidionysiou K, ..., Klareskog L, Kapetanovic M
Microbiol Spectr - (-) e0298123 [2024-03-05; online 2024-03-05]
Autoimmunity and Serology Profiling [Service]
PubMed DOI Crossref
Loss of chromosome Y in regulatory T cells.
Mattisson J, Halvardson J, Davies H, ..., Dumanski JP, Forsberg LA
BMC Genomics 25 (1) 243 [2024-03-05; online 2024-03-05]
NGI Single cell [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France.
Simões LG, Peyroteo-Stjerna R, Marchand G, ..., Günther T, Jakobsson M
Proc. Natl. Acad. Sci. U.S.A. 121 (10) e2310545121 [2024-03-05; online 2024-02-26]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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fhl2b mediates extraocular muscle protection in zebrafish models of muscular dystrophies and its ectopic expression ameliorates affected body muscles.
Dennhag N, Kahsay A, Nissen I, ..., von Hofsten J, Pedrosa Domellöf F
Nat Commun 15 (1) 1950 [2024-03-02; online 2024-03-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex.
Ament-Velásquez SL, Vogan AA, Wallerman O, ..., Giraud T, Johannesson H
Genome Biol Evol 16 (3) - [2024-03-02; online 2024-02-22]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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The impact of circulating protein levels identified by affinity proteomics on short-term, overall breast cancer risk.
Grassmann F, Mälarstig A, Dahl L, ..., Schwenk JM, Czene K
Br. J. Cancer 130 (4) 620-627 [2024-03-00; online 2023-12-22]
Affinity Proteomics Stockholm [Collaborative]
DOI Crossref
Sorption of pharmaceuticals to foam and aerobic granular sludge with different morphologies
Burzio C, Mohammadi AS, Smith S, ..., Persson F, Wilén BM
Resources, Environment and Sustainability 15 (-) 100149 [2024-03-00; online 2024-03-00]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Rare coding variants in NOX4 link high ROS levels to psoriatic arthritis mutilans.
Wang S, Nikamo P, Laasonen L, ..., Ståhle M, Tapia-Paez I
EMBO Mol Med 16 (3) 596-615 [2024-03-00; online 2024-02-20]
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Sheng N, Mårell L, Sitaram RT, ..., Westerlund A, Strömberg N
EBioMedicine 101 (-) 105001 [2024-03-00; online 2024-02-15]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Heredity (Edinb) 132 (3) 142-155 [2024-03-00; online 2024-01-30]
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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PLoS ONE 19 (2) e0299075 [2024-02-29; online 2024-02-29]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Rengefors K, Annenkova N, Wallenius J, ..., Kremp A, Ahrén D
Sci Rep 14 (1) 4986 [2024-02-29; online 2024-02-29]
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Structural Proteomics [Service]
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Chen JP, Diekmann C, Wu H, ..., Bienko M, Crosetto N
Nat Commun 15 (1) 1768 [2024-02-27; online 2024-02-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Cancers (Basel) 16 (5) - [2024-02-27; online 2024-02-27]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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BMC Biol. 22 (1) 49 [2024-02-27; online 2024-02-27]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Mak JKL, Skovgaard AC, Nygaard M, ..., Soerensen M, Jylhävä J
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NGI SNP genotyping [Service] NGI Short read [Service] National Genomics Infrastructure [Service]
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Intestinal stroma guides monocyte differentiation to macrophages through GM-CSF.
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Nat Commun 15 (1) 1752 [2024-02-26; online 2024-02-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Microb. Ecol. 87 (1) 48 [2024-02-26; online 2024-02-26]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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No link between type I interferon autoantibody positivity and adverse reactions to COVID-19 vaccines.
Yalcinkaya A, Cavalli M, Cederholm A, ..., Wadelius M, Landegren N
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Renström A, Choudhary S, Gandla ML, ..., Jämtgård S, Tuominen H
Physiol Plantarum 176 (1) e14219 [2024-02-21; online 2024-02-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service] Swedish NMR Centre (SNC) [Collaborative]
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Engen K, Lundbäck T, Yadav A, ..., Hallberg M, Larhed M
Int J Mol Sci 25 (5) - [2024-02-21; online 2024-02-21]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
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Mold JE, Weissman MH, Ratz M, ..., Michaëlsson J, Frisén J
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Hold K, Lord E, Brealey JC, ..., Martin MD, Dussex N
Sci Rep 14 (1) 4143 [2024-02-20; online 2024-02-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Bhardwaj A, Münch A, Montague J, ..., Rosenstiel P, Escudero-Hernández C
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Long noncoding RNA plasmacytoma variant translocation 1 is overexpressed in cutaneous squamous cell carcinoma and exon 2 is critical for its oncogenicity.
Li C, Sun C, Mahapatra KD, ..., Sonkoly E, Pivarcsi A
Br J Dermatol 190 (3) 415-426 [2024-02-16; online 2023-11-06]
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Zhang SM, Paulin CBJ, Shu H, ..., Helleday T, Rudd SG
iScience 27 (2) 108907 [2024-02-16; online 2024-01-13]
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Gene co-expression network analysis reveal core responsive genes in Parascaris univalens tissues following ivermectin exposure.
Dube F, Delhomme N, Martin F, ..., Svärd S, Tydén E
PLoS ONE 19 (2) e0298039 [2024-02-15; online 2024-02-15]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Viktorsson C, Portugal AM, Falck-Ytter T
Sci Rep 14 (1) 3668 [2024-02-14; online 2024-02-14]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Chachaj A, Jeziorek M, Dudka I, ..., Kujawa K, Szuba A
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Swedish NMR Centre (SNC) [Collaborative]
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Höglund J, Dias G, Olsen RA, ..., Talla V, Backström N
Genome Biol Evol 16 (2) - [2024-02-01; online 2024-02-18]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Long read [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Lucena-Perez M, Paijmans JLA, Nocete F, ..., Barlow A, Godoy JA
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles.
Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C
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Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]
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Longo A, Kurta K, Vanhala T, ..., de Koning DJ, Palaiokostas C
Anim Genet 55 (1) 87-98 [2024-02-00; online 2023-11-23]
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Sletvold N, Joffard N, Söderquist L
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Stokar-Regenscheit N, Bell L, Berridge B, ..., Sura R, Tomlinson L
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Affinity Proteomics Stockholm [Service]
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Menon I, Sych T, Son Y, ..., Levitz J, Menon AK
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Chondrelli N, Kuehn E, Meurling S, ..., Laurila A, Höglund J
Sci Rep 14 (1) 2495 [2024-01-30; online 2024-01-30]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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NGI Single cell [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Westenius E, Conner P, Pettersson M, ..., Lindstrand A, Iwarsson E
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Grujčić V, Saarenpää S, Sundh J, ..., Foster RA, Andersson AF
PLoS ONE 19 (1) e0296672 [2024-01-19; online 2024-01-19]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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iScience 27 (1) 108638 [2024-01-19; online 2023-12-05]
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Kırdök E, Kashuba N, Damlien H, ..., Aravena A, Götherström A
Sci Rep 13 (1) 22125 [2024-01-18; online 2024-01-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen.
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Microb. Ecol. 87 (1) 33 [2024-01-18; online 2024-01-18]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Altincekic N, Jores N, Löhr F, ..., Sreeramulu S, Schwalbe H
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Chemical Biology Consortium Sweden (CBCS) [Service] Swedish NMR Centre (SNC) [Collaborative]
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Andronico LA, Jiang Y, Carannante V, ..., Brodin P, Sezgin E
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Integrated Microscopy Technologies Stockholm [Service]
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Erythroid Differentiation Enhances RNA Mis-Splicing in SF3B1-Mutant Myelodysplastic Syndromes with Ring Sideroblasts.
Moura PL, Mortera-Blanco T, Hofman IJ, ..., Jacobsen SEW, Hellström-Lindberg E
Cancer Res. 84 (2) 211-225 [2024-01-16; online 2023-11-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Ultralight Ultrafast Enzymes.
Zhang X, Meng Z, Beusch CM, ..., Gaetani M, Zubarev RA
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Chemical Proteomics [Collaborative]
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Integrated Microscopy Technologies Stockholm [Service]
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A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile.
Lindelöf L, Rantapää-Dahlqvist S, Lundtoft C, ..., Svenungsson E, Eriksson O
J. Autoimmun. 143 (-) 103166 [2024-01-13; online 2024-01-13]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sahi M, Andersson S, Mattson C, ..., Chiodi F, Fredolini C
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Affinity Proteomics Stockholm [Technology development]
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Swedish NMR Centre (SNC) [Service]
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Differential expression and alternative splicing analyses of multiple tissues reveal albinism-associated genes in the Wels catfish (Silurus glanis).
Ozerov MY, Noreikiene K, Kahar S, ..., Gross R, Vasemägi A
Comp Biochem Physiol B Biochem Mol Biol 271 (-) 110941 [2024-01-11; online 2024-01-11]
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Mushtaq F, Nadeem A, Yabrag A, ..., Uhlin BE, Ahmad I
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Lourido L, Joshua V, Hansson M, ..., Klareskog L, Blanco FJ
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Autoimmunity and Serology Profiling [Collaborative]
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Single-cell genomics of a bloom-forming phytoplankton species reveals population genetic structure across continents.
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ISME J 18 (1) - [2024-01-08; online 2024-03-15]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Separating phases of allopolyploid evolution with resynthesized and natural Capsella bursa-pastoris.
Duan T, Sicard A, Glémin S, Lascoux M
Elife 12 (-) - [2024-01-08; online 2024-01-08]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Climate acts as an environmental filter to plant pathogens.
Caballol M, Redondo MÁ, Catalán N, ..., Stenlid J, Oliva J
ISME J 18 (1) - [2024-01-08; online 2024-02-17]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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A pan-genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin.
Biderre-Petit C, Courtine D, Hennequin C, ..., Divne A, Hochart C
Mol Ecol Resour - (-) e13923 [2024-01-08; online 2024-01-08]
Microbial Single Cell Genomics [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Sex-limited experimental evolution drives transcriptomic divergence in a hermaphrodite.
Cīrulis A, Nordén AK, Churcher AM, ..., Zadesenets KS, Abbott JK
Genome Biol Evol 16 (1) - [2024-01-05; online 2023-12-29]
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Nuclear Hsp104 safeguards the dormant translation machinery during quiescence.
Kohler V, Kohler A, Berglund LL, ..., Andréasson C, Büttner S
Nat Commun 15 (1) 315 [2024-01-05; online 2024-01-05]
Global Proteomics and Proteogenomics [Service]
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METTL3 drives telomere targeting of TERRA lncRNA through m6A-dependent R-loop formation: a therapeutic target for ALT-positive neuroblastoma.
Vaid R, Thombare K, Mendez A, ..., Fischer M, Mondal T
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Affinity Proteomics Uppsala [Collaborative]
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Exonic trinucleotide repeat expansions in ZFHX3 cause spinocerebellar ataxia type 4: A poly-glycine disease.
Wallenius J, Kafantari E, Jhaveri E, ..., Ehrencrona H, Puschmann A
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NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
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Elevated circulating adiponectin levels do not prevent anxiety-like behavior in a PCOS-like mouse model.
Samad M, Ek J, Börchers S, ..., Asterholm IW, Benrick A
Sci Rep 14 (1) 563 [2024-01-04; online 2024-01-04]
Glycoproteomics and MS Proteomics [Service]
PubMed DOI Crossref
Mutation of the cyclooxygenase 2 gene promoter and anastomotic leakage in colorectal cancer patients: retrospective cohort study.
Grahn O, Holmgren K, Hong MG, Sund M, Rutegård M
BJS Open 8 (1) - [2024-01-03; online 2024-01-30]
Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Identification of a Notch transcriptomic signature for breast cancer.
Braune EB, Geist F, Tang X, ..., Wienke D, Lendahl U
Breast Cancer Res. 26 (1) 4 [2024-01-03; online 2024-01-03]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network.
Hunt G, Vaid R, Pirogov S, ..., Reimegård J, Mannervik M
Genome Biol. 25 (1) 2 [2024-01-02; online 2024-01-02]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Functional annotation of a divergent genome using sequence and structure-based similarity.
Svedberg D, Winiger RR, Berg A, ..., Vossbrinck CR, Barandun J
BMC Genomics 25 (1) 6 [2024-01-02; online 2024-01-02]
Bioinformatics Support, Infrastructure and Training [Service] NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea.
Latz MAC, Andersson A, Brugel S, ..., Torstensson A, Andersson AF
Sci Data 11 (1) 18 [2024-01-02; online 2024-01-02]
Bioinformatics Long-term Support WABI [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Global Transcriptome Analysis Reveals Distinct Phases of the Endothelial Response to TNF.
Struck EC, Belova T, Hsieh PH, ..., Dusart PJ, Butler LM
J. Immunol. 212 (1) 117-129 [2024-01-01; online 2023-11-29]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A biobased binder of carboxymethyl cellulose, citric acid, chitosan and wheat gluten for nonwoven and paper.
Wennman M, Pinon AC, Svagan AJ, Hellberg M, Hedenqvist MS
Carbohydr Polym 323 (-) 121430 [2024-01-01; online 2023-09-23]
Swedish NMR Centre (SNC) [Collaborative]
PubMed DOI Crossref
Whole-genome selective sweep analyses identifies the region and candidate gene associated with white earlobe color in Mediterranean chickens.
Guo Y, Rubin CJ, Rönneburg T, ..., Hu X, Carlborg Ö
Poult. Sci. 103 (1) 103232 [2024-01-00; online 2023-10-24]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
The functional role of CST1 and CCL26 in asthma development.
Hoyer A, Chakraborty S, Lilienthal I, ..., Katayama S, Söderhäll C
Immun Inflamm Dis 12 (1) e1162 [2024-01-00; online 2024-01-25]
Affinity Proteomics Stockholm [Service]
PubMed DOI Crossref
Population genomics of the muskox' resilience in the near absence of genetic variation.
Pečnerová P, Lord E, Garcia-Erill G, ..., Moltke I, Siegismund HR
Mol. Ecol. 33 (2) e17205 [2024-01-00; online 2023-11-16]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phylogenomics and topological conflicts in the tribe Anthospermeae (Rubiaceae).
Thureborn O, Wikström N, Razafimandimbison SG, Rydin C
Ecol Evol 14 (1) e10868 [2024-01-00; online 2024-01-25]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
New indicators for monitoring genetic diversity applied to alpine brown trout populations using whole genome sequence data.
Kurland S, Saha A, Keehnen N, ..., Ryman N, Laikre L
Mol. Ecol. 33 (2) e17213 [2024-01-00; online 2023-11-28]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system.
Bittner MJ, Bannon CC, Rowland E, ..., Paerl RW, Riemann L
ISME COMMUN. 4 (1) ycad016 [2024-01-00; online 2024-01-10]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Multiplexed experimental strategies for fragment library screening against challenging drug targets using SPR biosensors.
FitzGerald EA, Vagrys D, Opassi G, ..., de Esch IJP, Danielson UH
SLAS DISCOVERY: Advancing Life Sciences R&D 29 (1) 40-51 [2024-01-00; online 2023-09-14]
Chemical Biology Consortium Sweden (CBCS) [Service] Drug Discovery and Development (DDD) [Service]
PubMed DOI Crossref
Effects of Wholegrain Compared to Refined Grain Intake on Cardiometabolic Risk Markers, Gut Microbiota, and Gastrointestinal Symptoms in Children: A Randomized Crossover Trial.
Madsen MTB, Landberg R, Nielsen DS, ..., Lauritzen L, Damsgaard CT
Am. J. Clin. Nutr. 119 (1) 18-28 [2024-01-00; online 2023-10-28]
Chalmers Mass Spectrometry Infrastructure [Collaborative]
PubMed DOI Crossref
Distinct molecular targets of ProEGCG from EGCG and superior inhibition of angiogenesis signaling pathways for treatment of endometriosis.
Hung SW, Gaetani M, Li Y, ..., Zubarev RA, Wang CC
J Pharm Anal 14 (1) 100-114 [2024-01-00; online 2023-09-11]
Chemical Proteomics [Collaborative]
PubMed DOI Crossref
DNA metabarcoding reveals spatial and temporal variation of fish eye fluke communities in lake ecosystems.
Diaz-Suarez A, Noreikiene K, Kahar S, ..., Kisand V, Vasemägi A
Int J Parasitol 54 (1) 33-46 [2024-01-00; online 2023-08-24]
Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Population genomic data reveal low genetic diversity, divergence and local adaptation among threatened Reeves's Pheasant (Syrmaticus reevesii)
Lu Q, Wang P, Chang J, ..., Höglund J, Zhang Z
Avian Research 15 (-) 100156 [2024-00-00; online 2024-00-00]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Publications 9.5.0