Publications 2026

A unique, non-normative burial of a young adult female from a 17th-century cemetery in Pień, north-central Poland. A multidisciplinary approach

Poliński D, Zagrodzka M, Grzybowski T, ..., Engelgardt P, Czyżewski Ł

Journal of Archaeological Science: Reports 74 (-) 105967 [2026-10-00; online 2026-10-00]

Pathogenic POLRMT variants in mice impair mtDNA transcription and affect perinatal survival

Alsina D, Rubalcava-Gracia D, Bubb K, ..., Koolmeister C, Larsson NG

JCI Insight 11 (14) - [2026-07-22; online 2026-07-22]

CRISPR Functional Genomics [Service]

Ancestry, admixture, and pathogens in contemporaneous Neolithic farmers and foragers on the Island of Gotland

Fraser M, Sanchez-Quinto F, Kırdök E, ..., Storå J, Jakobsson M

Commun Biol 9 (1) - [2026-07-13; online 2026-07-13]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Equal in death: Ancient genomic analysis of children's early Christian burials.

Krzewińska M, Kjellström A, Yaka R, ..., Storå J, Götherström A

Sci Adv 12 (28) eaeb8588 [2026-07-10; online 2026-07-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Phylogeny-aware comparative genomics of Vibrio vulnificus links genetic traits to pathogenicity.

Delgado LF, Riedinger DJ, Fernández-Juárez V, ..., Labrenz M, Andersson AF

MBio 17 (7) e0020526 [2026-07-08; online 2026-06-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Environmental Gradients Shape the Distribution of Free-Living and Host-Associated Syndiniales Life Stages.

Hanström N, Jan KMG, Winder M

Microb. Ecol. 89 (1) - [2026-07-08; online 2026-07-08]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Direct visualization of Na,K-ATPase clustering by 3D DNA-PAINT MINFLUX nanoscopy

Stojcic B, Agostinho A, Panconi L, Blom H, Brismar H

- - (-) - [2026-07-03; online 2026-07-03]

Integrated Microscopy Technologies Stockholm [Service]

Ribosome dynamics during skeletal muscle repair and regeneration in mice and humans

Cui M, Edman S, Jude B, ..., Schilcher J, von Walden F

Am. J. Physiol., Cell Physiol. 331 (1) C30-C40 [2026-07-01; online 2026-07-01]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

When the proteome meets the metabolome observational and Mendelian randomization analyses.

Zheng R, Delgado-Velandia M, Ärnlöv J, ..., Fall T, Lind L

Metabolism 180 (-) 156602 [2026-07-00; online 2026-04-08]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Using Nuclear Genomic Data to Address Intractable Relationships and Gene Tree Discordance in an Ancient Group of Gymnosperms (Ephedra, Gnetales).

Blokzijl R, Rydin C

Ecol Evol 16 (7) e73863 [2026-07-00; online 2026-06-30]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Paleogenomes reveal the evolutionary relationship between modern and cave lions

Stanton DWG, Bergström A, Heintzman PD, ..., Frantz L, Dalén L

Cell 189 (14) 4425-4436.e11 [2026-07-00; online 2026-07-00]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Machine learning based multi-omics analysis reveals key molecular determinants of Parkinson's disease severity.

Jin H, Meng L, Yulug B, ..., Uhlén M, Mardinoglu A

Neurobiol. Dis. 225 (-) 107424 [2026-07-00; online 2026-04-30]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genetic diversity of late Neanderthals in northwestern Europe.

Bossoms Mesa A, Essel E, Peyrégne S, ..., Peter BM, Hajdinjak M

Nature 655 (8122) 409-417 [2026-07-00; online 2026-06-24]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Metformin inhibits small intestinal neuroendocrine tumor growth in vivo

Axling F, Backman S, Hellman P, ..., Barazeghi E, Stålberg P

BMC Cancer 26 (1) - [2026-06-25; online 2026-06-25]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

MalDeepSeq panel: A targeted ultra-deep sequencing approach to trace drug resistance markers in Plasmodium falciparum.

Salazar YEAR, Rezende AM, Puça MCSB, ..., de Sousa TN, Gil JP

Cell Reports Methods - (-) 101509 [2026-06-25; online 2026-06-25]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Evaluating neoantigen-vaccine responses through mechanistic and model-based frameworks.

Ibrahim EIK, Laurén I, Veerman RE, ..., Mangsbo SM, Friberg LE

NPJ Precis Oncol 10 (1) - [2026-06-24; online 2026-06-24]

Drug Discovery and Development [Collaborative]

Lipid packing contributes to the confinement of caveolae to the plasma membrane

Larsson E, Kabedev A, Pace H, ..., Bally M, Lundmark R

- - (-) - [2026-06-22; online 2026-06-22]

Librarian: An Open-Access Web Application for High-Resolution Mass Spectral Library Assembly

Ahlberg Weidenfors J, Bonnefille B, Papazian S

Metabolites 16 (6) 433 [2026-06-22; online 2026-06-22]

Exposomics [Technology development]

Multi-Year Biofilm Formation on Granitic Surfaces Reveals Dynamic Microbial Communities in Fennoscandian Shield Deep Groundwaters.

Ståhle M, Johnson A, Turner S, ..., Kalinowski B, Dopson M

Microb. Ecol. 89 (1) - [2026-06-19; online 2026-06-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Developmentally dynamic, non-convergent transcriptomic profiles in CNV models for schizophrenia risk.

French H, Yao S, Bast L, ..., Sullivan PF, Hjerling-Leffler J

Mol. Psychiatry - (-) - [2026-06-18; online 2026-06-18]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Targeting oncogenic TβRI signaling inhibits androgen-independent prostate cancer growth and metastasis.

Flodbring Larsson P, Schmidt A, Mu Y, ..., Heldin CH, Landström M

Signal Transduct Target Ther 11 (1) - [2026-06-17; online 2026-06-17]

Comparative genomics reveal signatures of ecological specialization in the striped ambrosia beetle Trypodendron lineatum.

Montes-Ortiz Z, Powell D, Vogel H, Löfstedt C, Andersson MN

BMC Genomics 27 (1) - [2026-06-16; online 2026-06-16]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A comparison of ancient DNA yields across ossicles and the petrous bone reveals the best preservation in the stapes and incus.

Sağlıcan E, Sevkar A, Kazancı DD, ..., Erdal YS, Somel M

Genome Res. - (-) - [2026-06-11; online 2026-06-11]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Disrupting Notch signalling by a small molecule inhibiting dihydroorotate dehydrogenase activity.

Braune EB, Wienke D, Seshire A, ..., Lain S, Lendahl U

Sci Rep 16 (1) - [2026-06-06; online 2026-06-06]

Plattfota säljägare från stenålderns Gotland – tecken på nära släktskap?

Arcini CA, Ahlström T, Lundgren M

FORNVANNEN 121 (2) 141-147 [2026-06-05; online 2026-06-05]

Whole-genome sequencing with AVITI and NovaSeq X Plus reveals comparable performance with contextual biases.

Höjer P, Alneberg J, Lundin P, ..., Nordlund J, Månsson Welinder R

NAR Genom Bioinform 8 (2) lqag053 [2026-06-00; online 2026-05-26]

NGI Short read [Technology development] NGI Stockholm (Genomics Applications) [Technology development] NGI Stockholm (Genomics Production) [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] National Genomics Infrastructure [Technology development]

Spatiotemporal analysis reveals distinct inflammatory programs underlying chronic colitis

Fransson J, Sorini C, Castillo F, ..., Smith P, Villablanca EJ

Immunity 59 (6) 1599-1615.e5 [2026-06-00; online 2026-06-00]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Characterisation of Encephalitozoon cuniculi α-actinin.

Sandblad L, Backman L

Mol Biochem Parasitol 266 (-) 111738 [2026-06-00; online 2026-02-21]

Cryo-EM [Collaborative]

USP18 Impacts Cisplatin Resistance in Ovarian Cancer Cells by Modulating DNA Repair.

Corno C, Costantino M, Pettinari P, ..., D'Arcy P, Perego P

Int. J. Biol. Sci. 22 (11) 5780-5798 [2026-05-29; online 2026-05-29]

CRISPR Functional Genomics [Service]

ABHD2 activity is not required for the non-genomic action of progesterone on human sperm

Edwards M, Amaral A, Carter EM, ..., Gileadi O, Tredup C

Hum. Reprod. - (-) - [2026-05-29; online 2026-05-29]

Resolving the Haplotype Complexity of Colorectal Cancer Genomes with Droplet Barcode Sequencing.

Siga H, Höjer P, Pourbozorgi P, ..., Williams C, Ahmadian A

Life (Basel) 16 (6) - [2026-05-22; online 2026-05-22]

NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Probing biofilm development, stress response and heterogeneity—spectroscopic characterization of single and multi-species consortia

Yunda E, Hagberg A, Duteil T, ..., Quilès F, Ramstedt M

NPJ Biofilms Microbiomes 12 (1) - [2026-05-20; online 2026-05-20]

Comparing DNA metabarcoding with light microscopy to identify eukaryotic phytoplankton in the Baltic Sea, Kattegat and Skagerrak

Torstensson A, Brugel S, Andersson AF, ..., Lycken J, Andersson A

Sci Rep 16 (1) - [2026-05-19; online 2026-05-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Systematic discovery of motif-based interactions of the auxiliary domains of USP family deubiquitinases

Konstantinou A, Córdova-Pérez A, Varga JK, ..., Kulathu Y, Ivarsson Y

Nat Commun - (-) - [2026-05-18; online 2026-05-18]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Open and closed forms of assembled henipavirus nucleoprotein suggest structural basis of genome access

Jayachandran RB, Quignon E, Renner M

Sci Adv 12 (20) - [2026-05-15; online 2026-05-15]

Decoding murine corneal epithelial specification and homeostasis by single-cell spatial transcriptomics with scRNA-seq enrichment

Javidjam D, Vattulainen M, Lagali N, Moustardas P

- - (-) - [2026-05-12; online 2026-05-12]

Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Mitochondria serve as a holdout compartment for aggregation-prone proteins hindering efficient degradation.

Gierisch ME, Barchi E, Marogna M, ..., Salomons FA, Dantuma NP

Nat Commun 17 (1) - [2026-05-07; online 2026-05-07]

CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Neuroinflammation and neurodegeneration trigger a specific splice form of ribosomal protein S24

Magadi SS, Jonson M, Lucena PB, ..., Heneka MT, Jackson WS

Brain - (-) - [2026-05-06; online 2026-05-06]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Spruce Needles‐Derived N‐Doped Carbon as an Excellent Anode Material for Li‐Ion Batteries

Patthi RR, Manavalan G, Rao A, ..., Thyrel M, Petnikota S

ChemElectroChem 13 (9) - [2026-05-05; online 2026-04-27]

Divergent cis regulatory haplotypes at Tlr2 are associated with immune responsiveness

Nandakumar M, Lundberg M, Nouri M, ..., Carlsson F, Råberg L

Mol. Biol. Evol. 43 (5) - [2026-05-01; online 2026-04-29]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Process development and pilot-scale validation of γ-valerolactone pretreatment for softwood biorefining

Dixit P, Benavente V, Gustafsson T, ..., Jönsson LJ, Martín C

Biomass and Bioenergy 208 (-) 108846 [2026-05-00; online 2026-05-00]

LL‐37 Driven Phase Transition and Stacking in Oligolamellar Gram‐Negative Bacterial Membrane Models

Tran B, C.A. Lima D, Sandblad L, ..., Soares TA, Salentinig S

Adv Funct Materials 36 (38) - [2026-05-00; online 2026-03-11]

Cryo-EM [Collaborative]

Epigenetic changes as regulatory mechanism for the expression of life history stages in Zonotrichia capensis inhabiting an aseasonal environment

Pértille F, Gonzalez‐ Gomez PL, Wingfield JC, Guerrero‐Bosagna C

Journal of Avian Biology 2026 (3) - [2026-05-00; online 2026-05-21]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Characterization of the Spent MgO-Based Refractory Lining from a Rotary Lime Kiln Cofired with Fossil Fuels and Potassium-Rich Biomass

Wagri NK, Carlborg M, Eriksson M, ..., Broström M, M Andersson B

Energy Fuels 40 (17) 9430-9444 [2026-04-30; online 2026-04-18]

ADAR1 Regulates Alternative Splicing Through an RNA Editing-Independent Mechanism.

Sagredo EA, Karlström V, Blanco A, ..., Castello A, Armisén R

Int J Mol Sci 27 (9) - [2026-04-29; online 2026-04-29]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Breeding for climate adaptation: genetic variation and genomic selection for drought response in Scots pine.

Chaudhary R, Estravis Barcala M, Fundova I, ..., Chen ZQ, Wu HX

BMC Genomics 27 (1) - [2026-04-27; online 2026-04-27]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Environmental factors rather than genetics likely drive vitamin D deficiency in idiopathic scoliosis.

Georgopoulos I, Cheng T, Fell D, ..., Schizas N, Gerdhem P

Spine J - (-) - [2026-04-23; online 2026-04-23]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Longitudinal protein profiling of blood during childhood into early adulthood.

Bergström S, Björkander S, Bueno Álvez M, ..., Nilsson P, Melén E

Nat Commun 17 (1) - [2026-04-22; online 2026-04-22]

NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Genetic and environmental influences on data missingness in developmental cognitive neuroscience.

Bussu G, Portugal AM, Viktorsson C, Hardiansyah I, Falck-Ytter T

Commun Psychol 4 (1) - [2026-04-22; online 2026-04-22]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Ancient environmental genome reveals a migratory brown bear individual in Early Holocene Scandinavia.

Johnson E, Feinauer IS, Regnéll C, ..., Heintzman PD, Linderholm A

Proc. Natl. Acad. Sci. U.S.A. 123 (16) e2527944123 [2026-04-21; online 2026-04-13]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Unique sex chromosome translocations and evolutionary strata in two Sylvioidea songbird families.

Brown TJ, Ellerstrand SJ, Sigeman H, ..., Lundberg M, Hansson B

BMC Genomics 27 (1) - [2026-04-20; online 2026-04-20]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Rare regulatory mutations disrupt mesenchymal molecular programs driving endocardial cushion formation in bicuspid aortic valve.

Zhigulev A, Buyan A, Lázár E, ..., Björck HM, Sahlén P

Nat Commun 17 (1) - [2026-04-18; online 2026-04-18]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

RUVBL1 and RUVBL2 are druggable MYC effector regulators in neuroblastoma cells.

Siaw JT, Claeys A, Lai WY, ..., Palmer RH, Van den Eynden J

iScience 29 (4) 115236 [2026-04-17; online 2026-03-05]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genomic insights into fragmentation and translocation in European green toads.

Walderich LM, Susanto AW, Svensson M, ..., Rödin-Mörch P, Höglund J

iScience 29 (4) 115395 [2026-04-17; online 2026-03-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Minor hemolysin-coregulated proteins (Hcp) form heteromeric complexes and mediate effector secretion in Bacteroidales type VI secretion systems.

San-Miguel SG, Hillier JB, Saleh Al-Ammari MK, ..., Uhlin BE, Cisneros DA

J. Biol. Chem. 302 (6) 111464 [2026-04-16; online 2026-04-16]

Cryo-EM [Collaborative] Structural Proteomics [Service]

Dabigatran Concentrations in an Actively Breastfeeding Mother-Infant Dyad: Extending the Evidence for Oral Thromboprophylaxis Postpartum.

Green RW, Saleh A, Baranczewski P

Am. J. Hematol. - (-) - [2026-04-16; online 2026-04-16]

Drug Discovery and Development [Collaborative]

Evidence for cable bacteria inhabiting deep in anoxic sediment reveals a novel ecological niche.

Fonseca A, Hermans M, Nascimento FJA, ..., Gustafsson BG, Humborg C

Environ Microbiome 21 (1) - [2026-04-15; online 2026-04-15]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A transcriptional atlas of the pubertal human growth plate reveals two populations of stem cells and direct effect of growth hormone.

Chu NTL, Dregval O, Zaman F, ..., Adameyko I, Chagin AS

Sci Transl Med 18 (845) eadw3590 [2026-04-15; online 2026-04-15]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A tumor-associated photoreceptor signature unifies distinct central nervous system malignancies.

Gudenas BL, Ahmad ST, Englinger B, ..., Filbin MG, Northcott PA

Cancer Cell 44 (4) 831-845.e10 [2026-04-13; online 2026-03-05]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Dimethyl Fumarate, But Not Rituximab, Reduces Serum GFAP Levels and PIRMA in Relapsing–Remitting MS

Shawket F, Lycke J, Salzer J, ..., Burman J, Svenningsson A

Ann Clin Transl Neurol - (-) - [2026-04-12; online 2026-04-12]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

An integrative molecular map of pediatric B-cell precursor acute lymphoblastic leukemia.

Krali O, Enblad AP, Sulyaeva J, ..., Lönnerholm G, Nordlund J

Commun Med (Lond) 6 (1) - [2026-04-11; online 2026-04-11]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

A Phytophthora infestans CRN1-derived small RNA is predicted to target the potato immune regulator EDS1.

Singh S, Hu X, Dixelius C

Front Plant Sci 17 (-) 1791978 [2026-04-10; online 2026-04-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

TNFα signaling in radiation-induced chronic bowel dysfunction suggests therapeutic potential for IBD biologics

Devarakonda S, Patel P, Toft Morén A, ..., Villablanca EJ, Bull C

Mol. Med. 32 (1) - [2026-04-09; online 2026-04-09]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Potent Neuronal Nicotinamide Adenine Dinucleotide-Boosting Tetrahydroquinoxalines: Structure-Activity Relationships and Early Drug Metabolism and Pharmacokinetics Evaluation.

Cuřínová P, Jöe M, Cesar F, ..., Brancale A, Williams PA

ACS Med Chem Lett 17 (4) 916-924 [2026-04-09; online 2026-03-04]

Lectin pathway of complement in SLE: MAP-1 as a marker of haematological manifestations and elevated type I interferon activity.

Lindelöf L, Garred P, Hong MG, ..., Svenungsson E, Eriksson O

Lupus Sci Med 13 (1) - [2026-04-09; online 2026-04-09]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Single-cell analysis of inhibitory efferent neurons of the zebrafish lateral line.

Manuel R, Ahemaiti A, Tuz-Sasik MU, Boije H

PLoS ONE 21 (4) e0346255 [2026-04-08; online 2026-04-08]

Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Proviral NUP153 binding to viral proteins and RNA regulates structural-nonstructural protein ratios in orthoflavivirus infection.

Peters MBA, Lindqvist R, Kassa E, ..., Lundmark R, Överby AK

Nat Commun - (-) - [2026-04-08; online 2026-04-08]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Neoadjuvant palbociclib and endocrine therapy versus chemotherapy in ER + /HER2- breast cancer: a randomized phase II trial.

Matikas A, Tzoras E, Sarafidis M, ..., Hatschek T, Foukakis T

Nat Commun 17 (1) - [2026-04-08; online 2026-04-08]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Generalist phyllosphere taxa dominate microbial communities on macrophytes across a natural salinity gradient

Herlemann DPR, Riedinger DJ, Fenández-Juárez V, ..., Rakowski M, Labrenz M

Environ Microbiome 21 (1) - [2026-04-04; online 2026-04-04]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Limosilactobacillus reuteri metabolites modulate immune pathways and intestinal barrier repair after 5 fluorouracil exposure.

Lasaviciute G, López Plana M, Sundberg Örtegren S, ..., Mata Forsberg M, Sverremark-Ekström E

Sci Rep 16 (1) - [2026-04-02; online 2026-04-02]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Single-Cell Triomics Analysis of Tumor Cells Infiltrating Patient-Derived Breast Cancer Scaffolds

Filges S, Jonasson E, Leiva Arrabal MDC, ..., Ruff D, Ståhlberg A

Am. J. Pathol. 196 (4) 1016-1027 [2026-04-00; online 2026-04-00]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Pre-diagnostic and diagnostic D-vitamin levels and risk of bladder cancer - A nested case-control study with follow-up at diagnosis

Hultdin J, Tellström A, Freyhult E, Landström M, Ljungberg B

Clinical Nutrition Open Science - (-) 100658 [2026-04-00; online 2026-04-00]

Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Pan-Continental Genomic Analysis of Eurasian Perch Uncovers Global Diversity Hotspots and Postglacial Recolonization Patterns.

Lichman V, Ozerov M, López ME, ..., Gross R, Vasemägi A

Ecol Evol 16 (-) e73502 [2026-04-00; online 2026-04-21]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Nasal gene expression shows a distinct signature in type 2-high asthma but not in type 2-low disease.

Karp T, Merid SK, Kermani NZ, ..., Guryev V, van den Berge M

J. Allergy Clin. Immunol. 157 (4) 879-889 [2026-04-00; online 2026-01-02]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Differential negative dominance by KCNA2 variants associated with global developmental delay suggests KCNA2 haploinsufficiency in humans.

Boon PX, Jauregi-Miguel A, Yasarbas SS, ..., Shillington A, Pantazis A

J Physiol 604 (8) 3413-3430 [2026-04-00; online 2026-03-31]

Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Cell-specific DNA methylation in human alpha and beta cells regulates gene expression in type 2 diabetes.

Ofori JK, Ruhrmann S, Lindström A, ..., Bacos K, Ling C

Nat Metab 8 (4) 957-980 [2026-04-00; online 2026-04-24]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Bite-DNA Shows Substantial Browsing on Willows (Salix spp.) by North American Bison in Yellowstone National Park.

Jansson JL, Spitzer R, Brealey JC, Spong G

Ecol Evol 16 (4) e73354 [2026-04-00; online 2026-03-31]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

AlphaFold as a prior: experimental structure determination conditioned on a pretrained neural network

Fadini A, Li M, McCoy AJ, ..., Hekstra DR, AlQuraishi M

Nat Methods 23 (4) 785-795 [2026-04-00; online 2026-04-01]

Comparative Transcriptome Profiling of Nicotiana benthamiana Plants Infected with Potato Mop-Top Virus and Its Mutant Lacking a Gene for the 8K Protein Underlines the Role of Chloroplasts During Infection.

Roy S, Nemes K, Saripella GV, ..., Siddique AB, Savenkov EI

Mol. Plant Microbe Interact. - (-) MPMI10250146R [2026-03-31; online 2026-03-31]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Medical facemask waste alters detritus decomposition and fungal communities in a freshwater pond.

Kong ZH, Stangl M, Oester R, ..., Bundschuh M, Mckie BG

Sci Rep 16 (1) - [2026-03-30; online 2026-03-30]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Contrasting population genomic structuring of northern pike ( Esox lucius L.) in fresh‐ and brackish water environments: Implications for management and conservation

Diaz‐Suarez A, López M, Sundblad G, Vasemägi A

J. Fish Biol. - (-) - [2026-03-30; online 2026-03-30]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Tumor-infiltrating immature innate lymphoid cells in colorectal cancer are biased toward ILC1/tissue-resident NK cell differentiation.

Marchalot A, Ljunggren M, Stamper C, ..., Nordenvall C, Mjösberg J

Nat Commun 17 (1) - [2026-03-27; online 2026-03-27]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Analysis of medieval burials from Ibiza reveals genetic and pathogenic diversity during the Islamic period.

Rodríguez-Varela R, Pochon Z, Mas-Sandoval A, ..., Schlebusch CM, Götherström A

Nat Commun 17 (1) - [2026-03-26; online 2026-03-26]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Temporal genomics reveals widespread but unexpected consequences of a bottleneck in the Scandinavian brown bear

Lindahl A, Lord E, Chacón-Duque JC, ..., Dalén L, Feinauer IS

R. Soc. open sci. 13 (3) - [2026-03-25; online 2026-03-25]

Ancient DNA [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Centromeric instability and chromoanasynthesis observed in nine supernumerary marker chromosomes resolved with long-read genome sequencing

Bilgrav Saether K, Salazar Mantero A, Ek M, ..., Eisfeldt J, Lindstrand A

Genome Res. 36 (4) 661-670 [2026-03-25; online 2026-03-25]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Studying Macromolecular Composition in Cell-Cell Interfaces Using 3D Membrane Reconstitution Systems.

Ragaller F, Schneider AM, Sjule E, ..., Achour A, Sezgin E

Adv Sci (Weinh) - (-) e22443 [2026-03-24; online 2026-03-24]

Integrated Microscopy Technologies Stockholm [Service]

Ribonuclease 4 Functions in Nociceptor-Mediated Nerve Homeostasis.

Feng X, Zhang K, Techameena P, ..., Gurumurthy CB, Hadjab S

Nat Commun 17 (1) - [2026-03-24; online 2026-03-24]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Filifactor alocis FtxA blocks inflammation and apoptosis pathways in monocytic cells.

Razooqi Z, Bao K, Yabrag A, ..., Nadeem A, Oscarsson J

Front. Cell. Infect. Microbiol. 16 (-) 1745721 [2026-03-23; online 2026-03-23]

Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service]

Genetic predisposition to coffee consumption and the association with the early risk of atherosclerosis.

Qiao X, Toma VW, Wang J, ..., Zhong W, Iredahl F

Sci Rep 16 (1) - [2026-03-22; online 2026-03-22]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Avoiding Mitochondrial Apoptosis by the Bcl-2-Driven Bax Oligomerization on Membrane Surfaces

Ayscough SE, Clifton LA, Ådén J, ..., Wacklin-Knecht HP, Gröbner G

ACS Chem. Biol. 21 (3) 565-576 [2026-03-20; online 2026-02-18]

Transcription factor NFYA directs male meiotic entry by regulating accessible chromatin at meiotic promoters in mice

Säflund M, Askari M, Eghbali A, ..., Yu T, Özata DM

EMBO J. - (-) - [2026-03-19; online 2026-03-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Single-nucleus epigenomic profiling of the adult human central nervous system unveils epigenetic memory of developmental programs.

Kabbe M, Agirre E, Carlström KE, ..., Williams A, Castelo-Branco G

Nat. Neurosci. - (-) - [2026-03-19; online 2026-03-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Sex chromosome evolution mediated by a large inversion and a possible switch of the sex determination gene.

Mao X, Rafati N, Tellgren-Roth C, Ingvarsson PK, Karrenberg S

Genome Biol. 27 (1) - [2026-03-19; online 2026-03-19]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Mapping the human chemical exposome for public health

David A, Lennon S, Mercier F, ..., Le Bizec B, Samson M

Nat Med - (-) - [2026-03-18; online 2026-03-18]

Exposomics [Collaborative]

Glioma-induced DNMT3A reduction in microglia promotes an anti-tumoral phenotype.

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Cell Death Differ. - (-) - [2026-03-18; online 2026-03-18]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

FGFR signaling establishes spatial gradients of secretory cell identities along the airway proximal-distal axis.

Sountoulidis A, Theelke J, Liontos A, ..., Bellusci S, Samakovlis C

Nat Commun 17 (1) - [2026-03-18; online 2026-03-18]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

The population structure in the Baltic herring reflects natural selection and local adaptation.

Goodall J, Pettersson ME, Andersson A, ..., Andersson L, Laikre L

Proc. Natl. Acad. Sci. U.S.A. 123 (11) e2526500123 [2026-03-17; online 2026-03-09]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genomic identification and complete mitochondrial recovery of a Late Holocene porcupine (Erethizon dorsatum) mummy from Yukon permafrost

Selvatici S, Jin C, Zazula G, ..., Díez-del-Molino D, Oteo-García G

Sci Rep 16 (1) - [2026-03-17; online 2026-03-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Paralog-aware assembly and filtering strategies reveal minimal nucleotide variation on the macro germline-restricted chromosome of the zebra finch.

Chen A, Ruiz-Ruano FJ, Contreras-López O, ..., Suh A, Pei Y

Heredity (Edinb) - (-) - [2026-03-16; online 2026-03-16]

NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A chemical inducer of ribophagy limits the toxicity of ALS-related arginine-rich peptides

Porebski B, Lafarga V, Hansel C, ..., Hühn D, Fernández-Capetillo O

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Midostaurin response in AML is shaped by a progenitor-like cell state selectively targeted by SMAC mimetics.

Struyf N, Gezelius H, Lundmark A, ..., Kallioniemi O, Erkers T

NPJ Precis Oncol 10 (1) - [2026-03-11; online 2026-03-11]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Persistent interferon signaling causes sensory neuron plasticity and pain before and during arthritis.

Su J, Zhang MD, Kupari J, ..., Holmdahl R, Ernfors P

Nat. Neurosci. - (-) - [2026-03-10; online 2026-03-10]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Whole genomes reveal subpopulations and isolation-by-distance patterns in the Norwegian lemming.

Feinauer IS, Ravasini F, Lagerholm VK, ..., Angerbjörn A, Dalén L

BMC Biol. 24 (1) - [2026-03-06; online 2026-03-06]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Polycomb repression works without Siesta, the Drosophila ortholog of mammalian PCGF3.

Kahn TG, Garrido A, Yushkova A, ..., Larsson J, Schwartz YB

Sci Adv 12 (10) eaec0733 [2026-03-06; online 2026-03-06]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Above-Filter Digestion Proteomics Reveals Drug Targets and Localizes Ligand Binding Site.

Sokolova B, Gharibi H, Jafari M, ..., Saei AA, Zubarev RA

J. Proteome Res. 25 (3) 1556-1570 [2026-03-06; online 2026-02-07]

Chemical Proteomics [Technology development]

The HUNT study identifies host genetic factors reproducibly associated with human gut microbiota composition

Moksnes MR, Coward E, Nethander M, ..., Hveem K, Ohlsson C

Nat Genet 58 (3) 530-539 [2026-03-00; online 2026-02-13]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Resource Availability Modulates Gene Expression Across Life Stages in a Migratory Butterfly.

Shipilina D, Höök L, Näsvall K, ..., Talavera G, Backström N

Mol. Ecol. 35 (5) e70293 [2026-03-00; online 2026-03-09]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Optimizing T cell responses of targeted peptide antigen delivery by modulating antigen processing through amino acid exchange.

Laurén I, Kostakis A, Lord M, ..., Hansson P, Mangsbo S

International Journal of Biological Macromolecules 352 (-) 151135 [2026-03-00; online 2026-02-28]

Mycelial biomass growth stage at death determines fungal necromass decay dynamics

Maillard F, Lopes Ramos D, Zhang B, ..., Persson P, Tunlid A

Soil Biology and Biochemistry 214 (-) 110079 [2026-03-00; online 2026-03-00]

Genome-wide association analyses highlight the role of the intestinal molecular environment in human gut microbiota variation.

Dekkers KF, Pertiwi K, Baldanzi G, ..., Orho-Melander M, Fall T

Nat. Genet. 58 (3) 540-549 [2026-03-00; online 2026-02-13]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Evolution of hydration in cement blends with incorporation of activated low-kaolinite clays: Insights into the preferred aluminum uptake by C-(A)-S-H

Hazarika A, Huang L, Figueira J, Babaahmadi A

Cement and Concrete Research 201 (-) 108086 [2026-03-00; online 2026-03-00]

Enrichment of Neural Crest Cells by Antibody Labeling and Flow Cytometry for Single-Cell Transcriptomics in a Lizard.

Pranter R, Patthey C, Feiner N

Evol Dev 28 (1) e70030 [2026-03-00; online 2026-02-19]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Discovering and protecting cryptic biodiversity: A case study of a previously undescribed, vulnerable bird species in Japan.

Saitoh T, Shipilina D, Xia C, ..., Olsson U, Alström P

PNAS Nexus 5 (3) pgag037 [2026-03-00; online 2026-03-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

An Equatorial Hemispheric Barrier Shapes the Diversification of Migratory Belenois Butterflies.

Janiczek A, Palahí A, Dapporto L, ..., Suchan T, Talavera G

Mol. Ecol. 35 (6) e70310 [2026-03-00; online 2026-03-20]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A tryptophan-phenylalanine binding motif for the histone methyltransferases MLL4 and MLL3.

Biswas S, Tavaf Z, Benz C, ..., Ivarsson Y, Kutateladze TG

J. Biol. Chem. 302 (3) 111189 [2026-03-00; online 2026-01-23]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Symbiotic Diversity of Sap-Feeding Auchenorrhyncha (Hemiptera) in the Upland Landscapes of Central Cardamom Mountains, Cambodia.

Phauk S, Sin S, Terenius O

Microb. Ecol. 89 (1) - [2026-02-28; online 2026-02-28]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Novel activating SNRNP70-ALK fusion in congenital infant-type hemispheric glioma displays clinical response to lorlatinib: a case-report

Arthur C, Georgantzi K, de Ståhl TD, ..., Palmer R, Tham E

NPJ Precis Oncol 10 (1) - [2026-02-26; online 2026-02-26]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Isotopic insights into long-term socio-economic transformations in prehistoric Kuyavia, Poland

Pospieszny Ł, Lewis J, Wiltshire IL, ..., Starzyński K, Roffet-Salque M

R. Soc. open sci. 13 (2) - [2026-02-25; online 2026-02-25]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

The N-Myc MB0-MBI region interacts specifically and dynamically with the N-lobe of Aurora kinase A.

Hultman J, Morad V, Tanner E, ..., Ahlner A, Sunnerhagen M

Nat Commun 17 (1) - [2026-02-24; online 2026-02-24]

Structural Proteomics [Collaborative]

Silicone-Foam Passive Air Samplers for Combined Target and Nontarget Chemical Profiling and Toxicity Assessment of Airborne Exposomes

Sunyer-Caldú A, Xie H, Bonnefille B, ..., Papazian S, Martin JW

Environ. Sci. Technol. 60 (7) 5628-5644 [2026-02-24; online 2026-02-10]

Exposomics [Technology development]

Lipid‐Facilitated Opening of the ADAM10 Sheddase Revealed by Enhanced Sampling Simulations

Schahl A, Haloi N, Carroni M, ..., Delemotte L, Howard RJ

Adv Sci (Weinh) - (-) e15713 [2026-02-24; online 2026-02-24]

Integrated Microscopy Technologies Stockholm [Service]

Accuracy of occurrence and abundance estimates from insect metabarcoding.

Iwaszkiewicz-Eggebrecht E, Granqvist E, Nowak KH, ..., Meier R, Ronquist F

bioRxiv - (-) - [2026-02-22; online 2026-02-22]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Antibiotic resistance gradient along a large Scandinavian river influenced by wastewater treatment plants.

Gómez-Martínez D, Ngou JS, Ugolini V, ..., Kristiansson E, Corcoll N

FEMS Microbiol. Ecol. 102 (3) - [2026-02-19; online 2026-02-03]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Mattila TM, Fraser M, Koelman J, ..., Wallin P, Malmström H

Proc. Biol. Sci. 293 (2065) - [2026-02-18; online 2026-02-18]

Homologous recombination deficiency in primary ER-positive and HER2-negative breast cancer.

Davies HR, Black D, Kvist A, ..., Nik-Zainal S, Staaf J

Commun Med (Lond) 6 (1) 118 [2026-02-16; online 2026-02-16]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Distinct radial glia subtypes regulate midbrain dopaminergic neuron development.

Ásgrímsdóttir ES, Bassini LF, Sun T, ..., Toledo EM, Arenas E

Nat. Neurosci. - (-) - [2026-02-16; online 2026-02-16]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Multiomics assessment of lung adenocarcinoma subtypes defined through tumor purity-adjusted DNA methylation.

Nacer DF, Arbajian E, Veerla S, ..., Planck M, Staaf J

Genome Med 18 (1) - [2026-02-14; online 2026-02-14]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Exploring microbial diversity using cell-size fractionated enrichment incubations from subsurface aquifers at Äspö, Sweden.

Westmeijer G, Turner S, Hevele P, ..., Bertilsson S, Dopson M

Commun Biol - (-) - [2026-02-14; online 2026-02-14]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Rare germline variants contribute to glioma predisposition: Whole-genome analysis of a regional cohort of glioma patients.

Rosenbaum A, Wibom C, Hammermeister Suger A, ..., Dahlin AM, Melin B

Neurooncol Adv 8 (1) vdag038 [2026-02-12; online 2026-02-12]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Efficacy of mebendazole in the spontaneous NZBxNZWF1 animal model of systemic lupus erythematosus.

Eloranta ML, Nygren P, Larsson R, ..., Rönnblom L, Fryknäs M

Sci Rep 16 (1) 6357 [2026-02-12; online 2026-02-12]

Spatial overlap and temporal synchrony between guilds of insect hosts and parasitoids

van Dijk LJA, Goodsell RM, Andersson AF, ..., Roslin T, Tack AJM

Journal of Animal Ecology - (-) - [2026-02-10; online 2026-02-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genome Sequencing in 19 Families With Bladder Exstrophy and Epispadias Complex Indicates Involvement of the ADGR-Gene Family.

Nordenskjöld A, Alm S, Eisfeldt J, ..., Lindstrand A, Lagerstedt-Robinson K

Am. J. Med. Genet. A - (-) - [2026-02-10; online 2026-02-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

MYC modulates TOP2A diffusion to promote substrate detection and activity

Cameron DP, Jackson K, Loffreda A, ..., Mazza D, Baranello L

Nat Commun 17 (1) - [2026-02-09; online 2026-02-09]

Integrated Microscopy Technologies Stockholm [Service]

Targeted CSF metabolomics and conformal prediction improve diagnostic accuracy of normal pressure hydrocephalus.

Hofling U, Jakobsson J, Erngren I, ..., Kultima K, Virhammar J

Fluids Barriers CNS 23 (1) - [2026-02-07; online 2026-02-07]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Antiparallel stacking of Csu pili drives Acinetobacter baumannii 3D biofilm assembly

Malmi H, Pakharukova N, Paul B, ..., Ghosal D, Zavialov AV

Nat Commun 17 (1) - [2026-02-07; online 2026-02-07]

Cryo-EM [Service] Integrated Microscopy Technologies Umeå [Service]

Multi-omics data integration from patients with carotid stenosis illuminates key molecular signatures of atherosclerotic instability.

Das V, Narayanan S, Zhang X, ..., Hedin U, Matic L

Genome Med 18 (1) - [2026-02-06; online 2026-02-06]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Molecular interactome of HNRNPU reveals regulatory networks in neuronal differentiation and DNA methylation.

Oksanen M, Mastropasqua F, Mazan-Mamczarz K, ..., Gorospe M, Tammimies K

Nucleic Acids Res. 54 (4) - [2026-02-05; online 2026-02-12]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

TGFβ signaling promotes cell cycle progression and resistance to the CDK4/6 inhibitor palbociclib through SOX4 transcriptional modulation in breast cancer cells.

Ali MM, Itoh Y, Badji AMP, ..., Heldin CH, Moustakas A

Cell Death Dis 17 (1) 209 [2026-02-04; online 2026-02-04]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Dual-Color Expansion Microscopy of Membrane Proteins Using Bioorthogonal Labeling

Edwards S, Meineke B, Bauer S, ..., Elsässer S, Brismar H

Nano Lett. 26 (4) 1321-1326 [2026-02-04; online 2026-01-22]

Integrated Microscopy Technologies Stockholm [Technology development]

Mechanistic insights into PCBP1-driven unfolding of selected i-motif DNA at G1/S checkpoint.

Sengupta P, Gillet N, Obi I, Sabouri N

Nat Commun 17 (1) 1149 [2026-02-02; online 2026-02-02]

Swedish NMR Centre [Service]

Enhancement of Antibacterial Activity of Carbon Dots via Lysozyme Coupling.

Wang T, Opoku H, Li M, ..., Wang J, Kou W

ACS Appl Bio Mater 9 (3) 1499-1508 [2026-02-02; online 2026-01-13]

Warming Causes a Decline in Baltic Sea Coastal Sediment Microbial Abundance.

Seidel L, Li S, Hanna-Elias S, ..., Ketzer M, Dopson M

Environ. Microbiol. 28 (2) e70256 [2026-02-00; online 2026-02-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Hierarchical Porosity Engineering of Birch‐Derived Carbons via KOH Activation for High‐Performance Aluminum Batteries

E S S, Paul M, Manavalan G, ..., Thyrel M, Petnikota S

Batteries & Supercaps 9 (2) - [2026-02-00; online 2026-02-08]

Fibroblast growth factor signals drive the metastatic behavior in small cell lung cancer.

Ernhofer B, Solta A, Sinner J, ..., Dome B, Schelch K

Br. J. Cancer 134 (4) 543-554 [2026-02-00; online 2025-12-13]

Clinical Proteomics Lund [Service]

Exploration of immune phenotypes in self-sampling citizens

Dahl L, Bendes A, Álvez MB, ..., Roxhed N, Schwenk JM

iScience 29 (2) 114611 [2026-02-00; online 2026-02-00]

NGI Short read [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Collaborative]

Experimental and machine learning-based exploration of repurposed drugs reveals chemical features underlying phospholipidosis

Kuzikov M, Kalman A, Karki R, ..., Gribbon P, Zaliani A

Patterns - (-) 101453 [2026-02-00; online 2026-02-00]

Albacarcin V adds EPLIN as a novel and promising target for the treatment of female cancers and pediatric medulloblastoma.

Krahulcová L, Lindell E, Lu X, ..., Sjöblom T, Zhang X

Biochem. Pharmacol. 244 (-) 117625 [2026-02-00; online 2025-12-06]

SOX21 suppresses glioblastoma growth by repressing AP-1 activity

Rrapaj E, Yuan J, Kurtsdotter I, ..., Bergsland M, Muhr J

Cell Death Dis 17 (1) 191 [2026-01-31; online 2026-01-31]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Comprehensive profiling of CRISPR/dCas9 epigenome editors indicates a complex link between on and off target effects

Pahlevan Kakhki M, Rangani F, Ewing E, ..., Kular L, Jagodic M

Genome Biol. 27 (1) - [2026-01-31; online 2026-01-31]

NGI SNP genotyping [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Skeletal Muscle Microbiopsies in Children and Adults-Tolerability, Sample Yield, and Analyzability.

Högelin ER, Edman S, Jannig PR, ..., von Walden F, Fornander L

Muscle Nerve - (-) - [2026-01-30; online 2026-01-30]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Single-Cell Comparison of Small Intestinal Neuroendocrine Tumors and Enterochromaffin Cells from Two Patients.

Axling F, Barazeghi E, Hellman P, ..., Backman S, Stålberg P

Cancers (Basel) 18 (3) - [2026-01-29; online 2026-01-29]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Allergen-specific human IgE isolated through an allergen-agnostic pipeline—understanding immune response and allergen recognition

Thörnqvist L, Franciskovic E, Godzwon M, ..., Levander F, Ohlin M

Commun Biol 9 (1) - [2026-01-28; online 2026-01-28]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A study of k-mer patterns within DNA molecules sequenced from a chondrite

Farage C, Bachelet I

- - (-) - [2026-01-27; online 2026-01-27]

Effects of incrementally increased plant-based protein intake on gut microbiota and inflammatory-metabolic biomarkers in healthy adults.

Prado S, Kamm A, Dannenberg K, ..., Marques TM, Brummer RJ

Food Funct 17 (2) 942-956 [2026-01-26; online 2026-01-26]

Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]

NUP98 regulates orthoflavivirus replication through interaction with vRNA and can be targeted for antiviral purposes.

Peters MBA, Lindqvist R, Madhu P, ..., Ivarsson Y, Överby AK

Nucleic Acids Res. 54 (3) - [2026-01-22; online 2026-01-27]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Anoctamin-2-specific T cells link Epstein-Barr virus to multiple sclerosis.

Thomas OG, Rykaczewska U, Galešić M, ..., Guerreiro-Cacais AO, Olsson T

Cell 189 (2) 585-602.e38 [2026-01-22; online 2026-01-13]

Autoimmunity and Serology Profiling [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genetiska släktskapsanalyser och individerna från Riddarholmskyrkan (Magnus Ladulås grav: om sökandet i Riddarholmskyrkan)

Malmström H

- - (-) - [2026-01-21]

Draft assemblies for 177 bird species enhance genus-level coverage

Chen G, Wang S, Bilyeli Øksnebjerg D, ..., Gilbert MTP, Zhang G

Gigascience 15 (-) - [2026-01-21; online 2026-05-09]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Morphology-modified contributions of electronic transitions to the optical response of plasmonic nanoporous gold metamaterial.

Tapani T, Pettersson JM, Henriksson N, ..., Garoli D, Maccaferri N

Nat Commun 17 (1) 829 [2026-01-20; online 2026-01-20]

Integrative Epigenomic and Transcriptomic Profiling Define Malignancy- and Cluster-Specific Signatures in Pheochromocytomas and Paragangliomas

Tabebi M, Łysiak M, Gimm O, Söderkvist P

Cells 15 (2) 198 [2026-01-20; online 2026-01-20]

Clinical Genomics [Service] Clinical Genomics Linköping [Collaborative]

Cryo-electron tomography reveals coupled flavivirus replication, budding and maturation.

Dahmane S, Schexnaydre E, Zhang J, ..., Överby AK, Carlson LA

Nat Commun 17 (1) 828 [2026-01-20; online 2026-01-20]

Cryo-EM [Collaborative]

Results of Archaeological Research on Burials at St. George’s Church in Gokhnari

Sulkhanishvili D, Ioramashvili S, Mshvildadze M, Goguadze D, Burjanadze G

Chronos 6 (-) 220–246 [2026-01-15; online 2026-01-15]

The long noncoding RNA VIM-AS1 and nucleoporin Nup358/RanBP2 regulate SMAD nuclear accumulation during TGF-β signaling.

Rodrigues-Junior DM, Ali MM, Itoh Y, ..., Heldin CH, Moustakas A

Nucleic Acids Res. 54 (2) - [2026-01-14; online 2026-01-20]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Phylum-wide propionate degradation and its potential connection to poly-gamma-glutamate biosynthesis in Candidatus Cloacimonadota phylum.

Calusinska M, Herold M, Klimek D, ..., Delfosse P, Goux X

ISME J 20 (1) - [2026-01-14; online 2026-03-18]

Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]

Metabolic interactions between bacterial co-isolates from catheter-associated urinary tract infections

Sokol D, Rzhepishevska O, Marynova I, ..., Antti H, Ramstedt M

Sci Rep 16 (1) 2061 [2026-01-14; online 2026-01-14]

Chemical Biology Consortium Sweden [Service]

Dealing with phosphorus deficiency: contrasting strategies in marine phytoplankton and bacteria

Delgadillo-Nuño E, Teira E, Fernández E, ..., Pinhassi J, Martínez-García S

ISME COMMUN. 6 (1) ycag035 [2026-01-14; online 2026-02-20]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Cefiderocol resistance genes identified in environmental samples using functional metagenomics.

Gschwind R, Bonnet M, Abramova A, ..., Bengtsson-Palme J, Ruppé E

ISME J 20 (1) - [2026-01-14; online 2026-01-28]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Active methylotrophic methanogenesis by a microbial consortium enriched from a terrestrial meteorite impact crater.

van Dam F, Westmeijer G, Rezaei Somee M, ..., Dopson M, Drake H

MBio 17 (1) e0301725 [2026-01-14; online 2025-11-25]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

A combinatorial transcription factor screening platform for immune cell reprogramming.

Kurochkin I, Altman AR, Caiado I, ..., Theis FJ, Pereira CF

Cell Syst - (-) 101457 [2026-01-14; online 2026-01-14]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Structural basis for late maturation steps of mitochondrial respiratory chain complex IV within the human respirasome.

Nguyen MD, Sierra-Magro A, Singh V, ..., Barrientos A, Rorbach J

Nat Commun - (-) - [2026-01-10; online 2026-01-10]

Proteomic and Lipidomic Profiling of Immune Cell‐Derived Subpopulations of Extracellular Vesicles

Lischnig A, Karimi N, Larsson P, ..., Olin A, Lässer C

Proteomics - (-) e70096 [2026-01-10; online 2026-01-10]

Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]

Marine-Inspired Antimicrobial Peptides Disrupt Gene Expression at the DNA Level.

Beyer LI, Thoma J, Acha Alarcon L, ..., Inda-Díaz JS, Tietze AA

ACS Infect Dis 12 (1) 447-459 [2026-01-09; online 2025-12-09]

Glycoproteomics and MS Proteomics [Service]

Quantitative optical nanoscopy of mitochondrial-derived vesicles in neurons classifies pre-peroxisomal and clearing organelles.

Coceano G, Alvelid J, Damenti M, ..., Rorbach J, Testa I

Nat Commun 17 (1) 419 [2026-01-08; online 2026-01-08]

Integrated Microscopy Technologies Stockholm [Service]

Tirzepatide reduces alcohol drinking and relapse-like behaviours in rodents.

Edvardsson CE, Adermark L, Gottlieb S, ..., Becker HC, Jerlhag E

EBioMedicine 124 (-) 106119 [2026-01-07; online 2026-01-07]

Glycoproteomics and MS Proteomics [Collaborative]

Single-Cell Omics Analysis of Human Basophils Reveals Two Transcriptionally Distinct Populations.

Papavasileiou S, Mo J, Boey D, ..., Nilsson G, Dahlin JS

Allergy - (-) - [2026-01-07; online 2026-01-07]

NGI Long read [Collaborative] NGI Short read [Service] NGI Single cell [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Inflammatory protein profiles and shunt response in iNPH

Braun M, Ekblom M, Freyhult E, ..., Kultima K, Virhammar J

Fluids Barriers CNS 23 (1) 5 [2026-01-07; online 2026-01-07]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

TGFβ signaling mediates microglial resilience to spatiotemporally restricted myelin degeneration.

Zhu K, Liu Y, Min JH, ..., Harris RA, Lund H

Nat. Neurosci. - (-) - [2026-01-02; online 2026-01-02]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genome Shows no Recent Inbreeding in Near-Extinction Woolly Rhinoceros Sample Found in Ancient Wolf's Stomach.

Guðjónsdóttir SM, Lord E, Pochon Z, ..., Dalén L, Chacón-Duque JC

Genome Biol Evol 18 (1) - [2026-01-02; online 2026-01-14]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Acute high-dose irradiation disrupts cell adhesion and Silk-Ovarioid formation in human primary ovarian cells

Deligiannis SP, Li T, Moussaud-Lamodière E, ..., Salumets A, Di Nisio V

J Ovarian Res 19 (1) - [2026-01-02; online 2026-01-02]

NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Using Historic and Contemporary Genomes to Assess the Genetic Consequences of a Population Decline in an Endangered Tern Population.

Schnelle A, Rollins RE, Müller IA, ..., Bouwhuis S, Liedvogel M

Evol Appl 19 (1) e70192 [2026-01-00; online 2026-01-02]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Long-term heating differently impacts diversity and seasonal dynamics of prokaryotes and micro-eukaryotes in Baltic Sea coastal biofilm communities.

Svendsen IK, Rula I, Nilsson E, ..., Forsman A, Salis RK

ISME COMMUN. 6 (1) ycag101 [2026-01-00; online 2026-04-14]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genetic risk factors and clinical manifestations of systemic lupus erythematosus: Large-scale analysis of genetic predisposition and disease subtypes.

Reid S, Sandling JK, Pucholt P, ..., Rönnblom L, Leonard D

J. Intern. Med. 299 (1) 95-108 [2026-01-00; online 2025-11-07]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Exploring the Substitution of the C21-OAc Moiety in [11]Cytochalasans: Synthesis and Evaluation of Fluorophore Conjugates.

Kagho MD, Schmidt K, Chakrabarti A, ..., Stradal TE, Klahn P

ChemBioChem 27 (1) e202500794 [2026-01-00; online 2025-11-27]

Glycoproteomics and MS Proteomics [Service]

Dynamic interaction of the Yersinia pseudotuberculosis type three secretion system proteins LcrV and LcrG.

Mangu JCK, Rogne P, Mattsson J, ..., Francis MS, Wolf-Watz M

Protein Sci. 35 (1) e70400 [2026-01-00; online 2025-12-22]

Structural Proteomics [Collaborative] Swedish NMR Centre [Service]

Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis

Vaivade A, Sreenivasan AP, Erngren I, ..., Burman J, Kultima K

Environment International 207 (-) 109993 [2026-01-00; online 2026-01-00]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Cellular Hallmarks From Volume Electron Microscopy Reveal Developmental Progression of Plasmodium Ookinetes.

Darif N, Rheinnecker M, Hildenbrand K, ..., Schwab Y, Frischknecht F

Adv Sci (Weinh) 13 (4) e08250 [2026-01-00; online 2025-09-30]

Integrated Microscopy Technologies Umeå [Collaborative]

Benchmarking of single nuclei RNA-seq methods on human post-mortem brain tissue

Nikouei K, Gruyters E, Memic F, Stockmeier CA, Hjerling-Leffler J

Genomics 118 (1) 111184 [2026-01-00; online 2026-01-00]

NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Niobium-oxide-based octahedral molecular sieves as novel anode materials for sodium-ion batteries

Rao YB, Tavajohi N, Ohlin CA

Mater. Adv. 7 (3) 1691-1703 [2026-00-00; online 2026-00-00]