Publications 2026

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260 publications

PubMed DOI Crossref
The mouse gastric surface epithelial cell and its response to early Helicobacter pylori infection.
Erhardsson M, Santos L, Benktander J, ..., Thorell K, Lindén S
Virulence 17 (1) 2645859 [2026-12-00; online 2026-03-25]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Sewage surveillance for assessing clinical antibiotic resistance prevalence: Combining metagenomic and phenotypic data
Flach CF, Berglund F, Osena G, Huijbers PMC, Larsson DGJ
One Health 23 (-) 101485 [2026-12-00; online 2026-12-00]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cell surface remodeling caused by the loss of the flippase subunit TMEM30A in immune cells
Gurdap CO, Ragaller F, Muller M, ..., Sattentau QJ, Sezgin E
J Cell Sci 139 (21) - [2026-11-01; online 2026-08-14]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Identification of long non-coding RNAs involved in leukemogenesis and venetoclax response in acute myeloid leukemia through functional CRISPR-dCas9 interference screens
Cozzi E, Neddermeyer A, Miliara S, ..., Lennartsson A, Lehmann S
Noncoding RNA Res 20 (-) 29-43 [2026-10-00; online 2026-10-00]
CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
A unique, non-normative burial of a young adult female from a 17th-century cemetery in Pień, north-central Poland. A multidisciplinary approach
Poliński D, Zagrodzka M, Grzybowski T, ..., Engelgardt P, Czyżewski Ł
Journal of Archaeological Science: Reports 74 (-) 105967 [2026-10-00; online 2026-10-00]
Ancient DNA [Service]
PubMed DOI Crossref
Long-term effects of clear-cutting forestry on ectomycorrhizal fungi in boreal forest.
Lindahl BD, Clemmensen KE, Stendahl J, Dahlberg A
New Phytol. 251 (5) 2818-2831 [2026-09-00; online 2026-04-03]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Integrating GlycoSHIELD Modeling and DNA-PAINT SMLM to Map the Glycosylation-Dependent Distribution of the Na,K-ATPase.
Stojcic B, Draczkowski P, Patrick J, Saeed M, Brismar H
J Membr Biol 259 (1) - [2026-08-12; online 2026-08-12]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Cancer-associated KBTBD4 mutations induce differentiation defects and confer a unique therapeutic vulnerability
Sivaprasad R, Žemaitis K, Linfeldt D, ..., Hansson J, Subramaniam A
Cancer Gene Ther - (-) - [2026-08-10; online 2026-08-10]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Spectral biophysical cytometry with nanosensors reveals remodelling of immune cells in atherosclerosis.
Gurdap CO, Aydos D, Andronico LA, ..., Bitirim VC, Sezgin E
Nat Nanotechnol - (-) - [2026-08-06; online 2026-08-06]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
A pcyt-1 allelic series reveals in vivo consequences of reduced phosphatidylcholine synthesis in C. elegans.
Qvist A, Kaper D, Henricsson M, ..., Borén J, Pilon M
G3 (Bethesda) 16 (8) - [2026-08-05; online 2026-07-04]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
GLUD1 Inhibition Disrupts Glutamate Homeostasis and Induces Metabolic and Redox Stress in Gliomas.
Trybula M, Łysiak M, Wiechec E, Malmström A, Söderkvist P
Cells 15 (15) - [2026-08-03; online 2026-08-03]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
DOI Crossref
The significance of tree retention on fungal communities and below‐ground stocks 12 years after harvest of boreal forest
Gangiah TK, Clemmensen KE, Dahlberg A, Lindahl BD
Journal of Applied Ecology 63 (8) - [2026-08-00; online 2026-08-08]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Development and analytical validation of a targeted short-read next generation sequencing-based pharmacogenetic panel for comprehensive variant detection.
Gréen A, Fredriksson NJ, Andresen M, ..., Appell ML, Gréen H
British Journal of Pharmacology 183 (16) 4735-4760 [2026-08-00; online 2026-05-05]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A single-cell multi-omic atlas of the human pancreas reveals potential for cellular plasticity across development, health, and disease
Mereu E, Balboa D, Liebig J, ..., Conrad C, Eils R
Cell Metabolism - (-) - [2026-08-00; online 2026-08-00]
Spatial Proteomics [Service]
PubMed DOI Crossref
GloBIAS survey results - An insight into the global bioimage analysis community.
de la Ballina LR, Walther CG, Condon ND, ..., Corbat AA, Levet F
J Microsc - (-) - [2026-07-27; online 2026-07-27]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
Unheralded high MHC class II polymorphism in the abundant Atlantic herring resolved by long-read sequencing.
Jamsandekar M, Mohamadnejad Sangdehi F, Berg F, ..., Pettersson ME, Andersson L
Sci Adv 12 (30) eaea2862 [2026-07-24; online 2026-07-24]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
An integrated protocol for multiplexed DNA FISH and protein detection in large tissue sections.
O Roberts EM, Panshikar P, Li Wang X, ..., Bienko M, Stadler C
J Histotechnol - (-) 1-17 [2026-07-24; online 2026-07-24]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative] Spatial Proteomics [Technology development]
PubMed DOI Crossref
Pathogenic POLRMT variants in mice impair mtDNA transcription and affect perinatal survival
Alsina D, Rubalcava-Gracia D, Bubb K, ..., Koolmeister C, Larsson NG
JCI Insight 11 (14) - [2026-07-22; online 2026-07-22]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
Docking of virtual libraries identifies small-molecule agonists of neurotensin receptors with analgesic activity.
Panel N, Vo DD, Hübner H, ..., Gmeiner P, Carlsson J
Nat Commun 17 (1) - [2026-07-22; online 2026-07-22]
Drug Discovery and Development [Service]
PubMed DOI Crossref
Advancing FAIR data towards comparable, organized, predictive AI-ready data for community validation.
Wood-Charlson EM, Åkerström WN, Anderson L, ..., Van Den Bossche T, Arkin AP
Commun Biol 9 (1) - [2026-07-18; online 2026-07-18]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
Blood-Based DNA Methylation Models Improve Short-term Cardiovascular Risk Stratification in Individuals With Type 2 Diabetes.
Longo M, Desiderio A, Masulli M, ..., Beguinot F, Raciti GA
Diabetes Care - (-) - [2026-07-16; online 2026-07-16]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Pan-disease blood protein profiles of rheumatic autoimmune diseases.
Kenrick J, Preger C, Álvez MB, ..., Edfors F, Pin E
Commun Med (Lond) 6 (1) - [2026-07-13; online 2026-07-13]
PubMed DOI Crossref
Ancestry, admixture, and pathogens in contemporaneous Neolithic farmers and foragers on the Island of Gotland
Fraser M, Sanchez-Quinto F, Kırdök E, ..., Storå J, Jakobsson M
Commun Biol 9 (1) - [2026-07-13; online 2026-07-13]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Equal in death: Ancient genomic analysis of children's early Christian burials.
Krzewińska M, Kjellström A, Yaka R, ..., Storå J, Götherström A
Sci Adv 12 (28) eaeb8588 [2026-07-10; online 2026-07-10]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comparative genomics and transcriptomics of rough and smooth Mycobacterium marinum focusing on ESX-1, ESX-6 and LOS genes.
Behra PRK, Ramesh M, Pettersson BMF, Kirsebom LA
Sci Rep 16 (1) - [2026-07-10; online 2026-07-10]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phylogeny-aware comparative genomics of Vibrio vulnificus links genetic traits to pathogenicity.
Delgado LF, Riedinger DJ, Fernández-Juárez V, ..., Labrenz M, Andersson AF
MBio 17 (7) e0020526 [2026-07-08; online 2026-06-17]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Environmental Gradients Shape the Distribution of Free-Living and Host-Associated Syndiniales Life Stages.
Hanström N, Jan KMG, Winder M
Microb. Ecol. 89 (1) - [2026-07-08; online 2026-07-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Genomic Medicine Sweden: Advancing precision medicine at the national level.
Edsjö A, Lindstrand A, Baliakas P, ..., Fioretos T, Rosenquist R
J. Intern. Med. - (-) - [2026-07-06; online 2026-07-06]
Clinical Genomics [Collaborative] Clinical Genomics Stockholm [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Fibroblast-driven collagen expansion and altered thymic medullary niches in 22q11.2 deletion syndrome.
Hennings V, Lingman Framme J, Thörn K, ..., Björklund Å, Ekwall O
J Hum Immun 2 (4) e20260011 [2026-07-06; online 2026-05-04]
Spatial Proteomics [Service]
DOI Crossref
Bacterial membrane vesicles as effective immunotherapeutic agents in melanoma, colon, and breast cancer
Lötvall J, Ordouzadeh N, Park KS
Extracell Vesicles Circ Nucleic Acids. 7 (3) 1043-55 [2026-07-06; online 2026-07-06]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
Direct visualization of Na,K-ATPase clustering by 3D DNA-PAINT MINFLUX nanoscopy
Stojcic B, Agostinho A, Panconi L, Blom H, Brismar H
- - (-) - [2026-07-03; online 2026-07-03]
Integrated Microscopy Technologies Stockholm [Collaborative]
PubMed DOI Crossref
Ribosome dynamics during skeletal muscle repair and regeneration in mice and humans
Cui M, Edman S, Jude B, ..., Schilcher J, von Walden F
Am. J. Physiol., Cell Physiol. 331 (1) C30-C40 [2026-07-01; online 2026-07-01]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Comparison of library preparation protocols and bioinformatic pipelines in high-throughput 16S rRNA gene sequencing.
Andersson O, Fagerström A, Dannenberg K, ..., Lindqvist CM, Stenmark B
BMC Microbiol. 26 (1) - [2026-07-01; online 2026-07-01]
Clinical Genomics [Technology development] Clinical Genomics Örebro [Technology development]
PubMed DOI Crossref
When the proteome meets the metabolome observational and Mendelian randomization analyses.
Zheng R, Delgado-Velandia M, Ärnlöv J, ..., Fall T, Lind L
Metabolism 180 (-) 156602 [2026-07-00; online 2026-04-08]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Using Nuclear Genomic Data to Address Intractable Relationships and Gene Tree Discordance in an Ancient Group of Gymnosperms (Ephedra, Gnetales).
Blokzijl R, Rydin C
Ecol Evol 16 (7) e73863 [2026-07-00; online 2026-06-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Paleogenomes reveal the evolutionary relationship between modern and cave lions
Stanton DWG, Bergström A, Heintzman PD, ..., Frantz L, Dalén L
Cell 189 (14) 4425-4436.e11 [2026-07-00; online 2026-07-00]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Machine learning based multi-omics analysis reveals key molecular determinants of Parkinson's disease severity.
Jin H, Meng L, Yulug B, ..., Uhlén M, Mardinoglu A
Neurobiol. Dis. 225 (-) 107424 [2026-07-00; online 2026-04-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
GloBIAS: strengthening the foundations of bioimage analysis.
Corbat AA, Walther CG, de la Ballina LR, ..., Cimini BA, Haase R
Nat. Methods 23 (7) 1259-1260 [2026-07-00; online 2026-04-23]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
PubMed DOI Crossref
Genetic diversity of late Neanderthals in northwestern Europe.
Bossoms Mesa A, Essel E, Peyrégne S, ..., Peter BM, Hajdinjak M
Nature 655 (8122) 409-417 [2026-07-00; online 2026-06-24]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
FN-silk membrane enables alveologenesis processes and self-organization of the H441 epithelial cell line into native-like alveolar morphology.
Gkouma S, Påvenius L, Gustafsson L, ..., Palmberg L, Hedhammar M
Sci Rep 16 (1) - [2026-06-27; online 2026-06-27]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Metformin inhibits small intestinal neuroendocrine tumor growth in vivo
Axling F, Backman S, Hellman P, ..., Barazeghi E, Stålberg P
BMC Cancer 26 (1) - [2026-06-25; online 2026-06-25]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
MalDeepSeq panel: A targeted ultra-deep sequencing approach to trace drug resistance markers in Plasmodium falciparum.
Salazar YEAR, Rezende AM, Puça MCSB, ..., de Sousa TN, Gil JP
Cell Reports Methods - (-) 101509 [2026-06-25; online 2026-06-25]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Evaluating neoantigen-vaccine responses through mechanistic and model-based frameworks.
Ibrahim EIK, Laurén I, Veerman RE, ..., Mangsbo SM, Friberg LE
NPJ Precis Oncol 10 (1) - [2026-06-24; online 2026-06-24]
Drug Discovery and Development [Collaborative]
DOI Crossref
Lipid packing contributes to the confinement of caveolae to the plasma membrane
Larsson E, Kabedev A, Pace H, ..., Bally M, Lundmark R
- - (-) - [2026-06-22; online 2026-06-22]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Librarian: An Open-Access Web Application for High-Resolution Mass Spectral Library Assembly
Ahlberg Weidenfors J, Bonnefille B, Papazian S
Metabolites 16 (6) 433 [2026-06-22; online 2026-06-22]
Exposomics [Technology development]
PubMed DOI Crossref
Clonal hematopoiesis of indeterminate potential in high grade B-cell lymphomas: clinicobiological associations and further insight with single-cell multiomics analysis.
Hesselager C, Hollander P, Pettersson E, ..., Baliakas P, Amini RM
Blood Cancer J 16 (1) - [2026-06-20; online 2026-06-20]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Multi-Year Biofilm Formation on Granitic Surfaces Reveals Dynamic Microbial Communities in Fennoscandian Shield Deep Groundwaters.
Ståhle M, Johnson A, Turner S, ..., Kalinowski B, Dopson M
Microb. Ecol. 89 (1) - [2026-06-19; online 2026-06-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
Live bacteria nitrogen uptake in response to winter warming in dry Arctic heath
Rütting L, Rodas S, Rasmussen L, ..., Arellano-Caicedo C, Hammer E
- - (-) - [2026-06-18; online 2026-06-18]
Integrated Microscopy Technologies Gothenburg [Technology development]
PubMed DOI Crossref
Developmentally dynamic, non-convergent transcriptomic profiles in CNV models for schizophrenia risk.
French H, Yao S, Bast L, ..., Sullivan PF, Hjerling-Leffler J
Mol. Psychiatry - (-) - [2026-06-18; online 2026-06-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Targeting oncogenic TβRI signaling inhibits androgen-independent prostate cancer growth and metastasis.
Flodbring Larsson P, Schmidt A, Mu Y, ..., Heldin CH, Landström M
Signal Transduct Target Ther 11 (1) - [2026-06-17; online 2026-06-17]
Drug Discovery and Development [Service]
PubMed DOI Crossref
Correlating Molecule Counts with Stress Granule Size Using Novel Platinized Carbon Nanopore Electrodes.
Wang Y, Gu C, Gu H, ..., Wang D, Ewing AG
Anal. Chem. 98 (23) 17153-17160 [2026-06-16; online 2026-06-02]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Comparative genomics reveal signatures of ecological specialization in the striped ambrosia beetle Trypodendron lineatum.
Montes-Ortiz Z, Powell D, Vogel H, Löfstedt C, Andersson MN
BMC Genomics 27 (1) - [2026-06-16; online 2026-06-16]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A comparison of ancient DNA yields across ossicles and the petrous bone reveals the best preservation in the stapes and incus.
Sağlıcan E, Sevkar A, Kazancı DD, ..., Erdal YS, Somel M
Genome Res. - (-) - [2026-06-11; online 2026-06-11]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Disrupting Notch signalling by a small molecule inhibiting dihydroorotate dehydrogenase activity
Braune EB, Wienke D, Seshire A, ..., Lain S, Lendahl U
Sci Rep 16 (1) - [2026-06-06; online 2026-06-06]
Chemical Biology Consortium Sweden [Collaborative]
DOI Crossref
Plattfota säljägare från stenålderns Gotland – tecken på nära släktskap?
Arcini CA, Ahlström T, Lundgren M
FORNVANNEN 121 (2) 141-147 [2026-06-05; online 2026-06-05]
Ancient DNA [Service]
DOI Crossref
Immobilization in nanocellulose matrix reallocates cyanobacterial proteome resources from growth to bioproduction
Lupacchini S, Sporre E, Attallah NL, ..., Hudson EP, Guccini V
- - (-) - [2026-06-05; online 2026-06-05]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Breed-specific divergence in boar sperm regulatory profiles involves piRNA and mitochondrial small RNAs.
Asratian A, Isacson S, Kugelberg U, Walsh CP, Öst A
Cell. Mol. Life Sci. 83 (1) - [2026-06-04; online 2026-06-04]
Clinical Genomics [Service] Clinical Genomics Linköping [Collaborative]
PubMed DOI Crossref
Revisiting the African mtDNA landscape through complete mitochondrial genomes.
Lankheet I, Chowdhury A, Tellgren-Roth C, ..., Malmström H, Schlebusch CM
Commun Biol 9 (1) - [2026-06-03; online 2026-06-03]
NGI Long read [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
Whole-genome sequencing with AVITI and NovaSeq X Plus reveals comparable performance with contextual biases.
Höjer P, Alneberg J, Lundin P, ..., Nordlund J, Månsson Welinder R
NAR Genom Bioinform 8 (2) lqag053 [2026-06-00; online 2026-05-26]
NGI Long read [Collaborative] NGI Stockholm (Genomics Applications) [Technology development] NGI Stockholm (Genomics Production) [Technology development] NGI Uppsala (SNP&SEQ Technology Platform) [Technology development] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]
PubMed DOI Crossref
The Fungal Community of a High-Arctic Semi-Desert Ecosystem Is Robust to Two Decades of Doubled Summer Precipitation but Influenced by Plant Dominance.
Harder CB, Michelsen A, Castaño C, Clemmensen KE
Mol. Ecol. 35 (12) e70440 [2026-06-00; online 2026-06-27]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Studying Macromolecular Composition in Cell–Cell Interfaces Using 3D Membrane Reconstitution Systems
Ragaller F, Schneider AM, Sjule E, ..., Achour A, Sezgin E
Adv Sci (Weinh) 13 (31) e22443 [2026-06-00; online 2026-03-24]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Spatiotemporal analysis reveals distinct inflammatory programs underlying chronic colitis
Fransson J, Sorini C, Castillo F, ..., Smith P, Villablanca EJ
Immunity 59 (6) 1599-1615.e5 [2026-06-00; online 2026-06-00]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Characterisation of Encephalitozoon cuniculi α-actinin.
Sandblad L, Backman L
Mol Biochem Parasitol 266 (-) 111738 [2026-06-00; online 2026-02-21]
Cryo-EM [Collaborative]
PubMed DOI Crossref
USP18 Impacts Cisplatin Resistance in Ovarian Cancer Cells by Modulating DNA Repair.
Corno C, Costantino M, Pettinari P, ..., D'Arcy P, Perego P
Int. J. Biol. Sci. 22 (11) 5780-5798 [2026-05-29; online 2026-05-29]
CRISPR Functional Genomics [Service]
PubMed DOI Crossref
ABHD2 activity is not required for the non-genomic action of progesterone on human sperm
Edwards M, Amaral A, Carter EM, ..., Gileadi O, Tredup C
Hum. Reprod. - (-) - [2026-05-29; online 2026-05-29]
Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
Genomic characterization of Enterotoxigenic Escherichia coli lineage 2 (CS2 + CS3) by long-read sequencing reveals distinct lineage-specific genome organization.
Taheri N, Sjöling Å
Sci Rep 16 (1) - [2026-05-26; online 2026-05-26]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Resolving the Haplotype Complexity of Colorectal Cancer Genomes with Droplet Barcode Sequencing.
Siga H, Höjer P, Pourbozorgi P, ..., Williams C, Ahmadian A
Life (Basel) 16 (6) - [2026-05-22; online 2026-05-22]
NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Frozen melanoma tissues yield extracellular vesicles with preserved diagnostic and immunogenic properties.
D Arrigo D, Park KS, Lässer C, ..., Lötvall J, Crescitelli R
BMC Med 24 (1) - [2026-05-21; online 2026-05-21]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Dysregulation of glycogen metabolism in cardiomyopathy caused by glycogenin-1 (GYG1) missense variants.
Visuttijai K, Hedberg-Oldfors C, Braun O, ..., Karason K, Oldfors A
J. Clin. Endocrinol. Metab. - (-) - [2026-05-21; online 2026-05-21]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
A workflow for combined detection of protein interactions and cell types for translational studies
Okasmaa L, Ullman T, Panshikar P, ..., Ullén A, Stadler C
- - (-) - [2026-05-21; online 2026-05-21]
Spatial Proteomics [Technology development]
PubMed DOI Crossref
Probing biofilm development, stress response and heterogeneity—spectroscopic characterization of single and multi-species consortia
Yunda E, Hagberg A, Duteil T, ..., Quilès F, Ramstedt M
NPJ Biofilms Microbiomes 12 (1) - [2026-05-20; online 2026-05-20]
Integrated Microscopy Technologies Umeå [Service]
PubMed DOI Crossref
Comparing DNA metabarcoding with light microscopy to identify eukaryotic phytoplankton in the Baltic Sea, Kattegat and Skagerrak
Torstensson A, Brugel S, Andersson AF, ..., Lycken J, Andersson A
Sci Rep 16 (1) - [2026-05-19; online 2026-05-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Systematic discovery of motif-based interactions of the auxiliary domains of USP family deubiquitinases
Konstantinou A, Córdova-Pérez A, Varga JK, ..., Kulathu Y, Ivarsson Y
Nat Commun - (-) - [2026-05-18; online 2026-05-18]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Open and closed forms of assembled henipavirus nucleoprotein suggest structural basis of genome access
Jayachandran RB, Quignon E, Renner M
Sci Adv 12 (20) eaed8300 [2026-05-15; online 2026-05-15]
Cryo-EM [Service]
PubMed DOI Crossref
Comparative biodegradation of functionalized graphene oxide nanosheets by myeloperoxidase and neutrophil extracellular traps.
Bahmani M, Gholami A, Ghaeidamini M, ..., Mijakovic I, Rahimi S
Front Bioeng Biotechnol 14 (-) 1797692 [2026-05-13; online 2026-05-13]
Integrated Microscopy Technologies Gothenburg [Service]
DOI Crossref
Decoding murine corneal epithelial specification and homeostasis by single-cell spatial transcriptomics with scRNA-seq enrichment
Javidjam D, Vattulainen M, Lagali N, Moustardas P
- - (-) - [2026-05-12; online 2026-05-12]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
DOI Crossref
Enzyme-activated Proximity of Oligonucleotides Sensing (EPOS), for precise monitoring of protein interactions
Heldin J, Wenson L, Wenz A, ..., Koos B, Söderberg O
- - (-) - [2026-05-11; online 2026-05-11]
Integrated Microscopy Technologies Stockholm [Service]
PubMed DOI Crossref
Mitochondria serve as a holdout compartment for aggregation-prone proteins hindering efficient degradation.
Gierisch ME, Barchi E, Marogna M, ..., Salomons FA, Dantuma NP
Nat Commun 17 (1) - [2026-05-07; online 2026-05-07]
CRISPR Functional Genomics [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Neuroinflammation and neurodegeneration trigger a specific splice form of ribosomal protein S24
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Spruce Needles‐Derived N‐Doped Carbon as an Excellent Anode Material for Li‐Ion Batteries
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ChemElectroChem 13 (9) - [2026-05-05; online 2026-04-27]
Integrated Microscopy Technologies Umeå [Service]
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Valencia-Cárdenas VM, Kulikov N, Contreras-Martín R, ..., Ord TJ, Irisarri I
Genome Biol Evol 18 (5) - [2026-05-01; online 2026-05-12]
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Divergent cis regulatory haplotypes at Tlr2 are associated with immune responsiveness
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Mol. Biol. Evol. 43 (5) - [2026-05-01; online 2026-04-29]
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Process development and pilot-scale validation of γ-valerolactone pretreatment for softwood biorefining
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Biomass and Bioenergy 208 (-) 108846 [2026-05-00; online 2026-05-00]
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LL‐37 Driven Phase Transition and Stacking in Oligolamellar Gram‐Negative Bacterial Membrane Models
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Epigenetic changes as regulatory mechanism for the expression of life history stages in Zonotrichia capensis inhabiting an aseasonal environment
Pértille F, Gonzalez‐ Gomez PL, Wingfield JC, Guerrero‐Bosagna C
Journal of Avian Biology 2026 (3) - [2026-05-00; online 2026-05-21]
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Wagri NK, Carlborg M, Eriksson M, ..., Broström M, M Andersson B
Energy Fuels 40 (17) 9430-9444 [2026-04-30; online 2026-04-18]
Integrated Microscopy Technologies Umeå [Service]
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ADAR1 Regulates Alternative Splicing Through an RNA Editing-Independent Mechanism.
Sagredo EA, Karlström V, Blanco A, ..., Castello A, Armisén R
Int J Mol Sci 27 (9) - [2026-04-29; online 2026-04-29]
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Conserved molecular signatures of hygrosensory neurons in two dipteran species.
Corthals K, Giri G, Reimegård J, Churcher A, Enjin A
PLoS ONE 21 (4) e0347993 [2026-04-28; online 2026-04-28]
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Breeding for climate adaptation: genetic variation and genomic selection for drought response in Scots pine.
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BMC Genomics 27 (1) - [2026-04-27; online 2026-04-27]
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Environmental factors rather than genetics likely drive vitamin D deficiency in idiopathic scoliosis.
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Longitudinal protein profiling of blood during childhood into early adulthood.
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Nat Commun 17 (1) - [2026-04-22; online 2026-04-22]
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Bussu G, Portugal AM, Viktorsson C, Hardiansyah I, Falck-Ytter T
Commun Psychol 4 (1) - [2026-04-22; online 2026-04-22]
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Ancient environmental genome reveals a migratory brown bear individual in Early Holocene Scandinavia.
Johnson E, Feinauer IS, Regnéll C, ..., Heintzman PD, Linderholm A
Proc. Natl. Acad. Sci. U.S.A. 123 (16) e2527944123 [2026-04-21; online 2026-04-13]
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Unique sex chromosome translocations and evolutionary strata in two Sylvioidea songbird families.
Brown TJ, Ellerstrand SJ, Sigeman H, ..., Lundberg M, Hansson B
BMC Genomics 27 (1) - [2026-04-20; online 2026-04-20]
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Rare regulatory mutations disrupt mesenchymal molecular programs driving endocardial cushion formation in bicuspid aortic valve.
Zhigulev A, Buyan A, Lázár E, ..., Björck HM, Sahlén P
Nat Commun 17 (1) - [2026-04-18; online 2026-04-18]
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RUVBL1 and RUVBL2 are druggable MYC effector regulators in neuroblastoma cells.
Siaw JT, Claeys A, Lai WY, ..., Palmer RH, Van den Eynden J
iScience 29 (4) 115236 [2026-04-17; online 2026-03-05]
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Genomic insights into fragmentation and translocation in European green toads.
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Functional PD-1/PD-L1 engagement defines a spatial biomarker of immunotherapy response
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Origins of iAMP21 in children who later developed paediatric acute lymphoblastic leukemia: an investigation of neonatal blood spots.
Leijonhufvud G, Ljungström V, Amini RM, ..., Ford AM, Gustafsson B
Haematologica - (-) - [2026-04-16; online 2026-04-16]
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Minor hemolysin-coregulated proteins (Hcp) form heteromeric complexes and mediate effector secretion in Bacteroidales type VI secretion systems.
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J. Biol. Chem. 302 (6) 111464 [2026-04-16; online 2026-04-16]
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Dabigatran Concentrations in an Actively Breastfeeding Mother-Infant Dyad: Extending the Evidence for Oral Thromboprophylaxis Postpartum.
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Environ Microbiome 21 (1) - [2026-04-15; online 2026-04-15]
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Sci Transl Med 18 (845) eadw3590 [2026-04-15; online 2026-04-15]
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Abel E, Östling P, Hallersjö Hult E, ..., Edsjö A, FOCU.SE trial group
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A tumor-associated photoreceptor signature unifies distinct central nervous system malignancies.
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Cancer Cell 44 (4) 831-845.e10 [2026-04-13; online 2026-03-05]
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Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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An integrative molecular map of pediatric B-cell precursor acute lymphoblastic leukemia.
Krali O, Enblad AP, Sulyaeva J, ..., Lönnerholm G, Nordlund J
Commun Med (Lond) 6 (1) - [2026-04-11; online 2026-04-11]
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Singh S, Hu X, Dixelius C
Front Plant Sci 17 (-) 1791978 [2026-04-10; online 2026-04-10]
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TNFα signaling in radiation-induced chronic bowel dysfunction suggests therapeutic potential for IBD biologics
Devarakonda S, Patel P, Toft Morén A, ..., Villablanca EJ, Bull C
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Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Potent Neuronal Nicotinamide Adenine Dinucleotide-Boosting Tetrahydroquinoxalines: Structure-Activity Relationships and Early Drug Metabolism and Pharmacokinetics Evaluation.
Cuřínová P, Jöe M, Cesar F, ..., Brancale A, Williams PA
ACS Med Chem Lett 17 (4) 916-924 [2026-04-09; online 2026-03-04]
Drug Discovery and Development [Service]
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Lectin pathway of complement in SLE: MAP-1 as a marker of haematological manifestations and elevated type I interferon activity.
Lindelöf L, Garred P, Hong MG, ..., Svenungsson E, Eriksson O
Lupus Sci Med 13 (1) - [2026-04-09; online 2026-04-09]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Single-cell analysis of inhibitory efferent neurons of the zebrafish lateral line.
Manuel R, Ahemaiti A, Tuz-Sasik MU, Boije H
PLoS ONE 21 (4) e0346255 [2026-04-08; online 2026-04-08]
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Proviral NUP153 binding to viral proteins and RNA regulates structural-nonstructural protein ratios in orthoflavivirus infection.
Peters MBA, Lindqvist R, Kassa E, ..., Lundmark R, Överby AK
Nat Commun - (-) - [2026-04-08; online 2026-04-08]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Neoadjuvant palbociclib and endocrine therapy versus chemotherapy in ER + /HER2- breast cancer: a randomized phase II trial.
Matikas A, Tzoras E, Sarafidis M, ..., Hatschek T, Foukakis T
Nat Commun 17 (1) - [2026-04-08; online 2026-04-08]
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Centromeric instability and chromoanasynthesis observed in nine supernumerary marker chromosomes resolved with long-read genome sequencing.
Bilgrav Saether K, Salazar Mantero A, Ek M, ..., Eisfeldt J, Lindstrand A
Genome Res. 36 (4) 661-670 [2026-04-07; online 2026-04-07]
NGI Long read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Generalist phyllosphere taxa dominate microbial communities on macrophytes across a natural salinity gradient
Herlemann DPR, Riedinger DJ, Fenández-Juárez V, ..., Rakowski M, Labrenz M
Environ Microbiome 21 (1) - [2026-04-04; online 2026-04-04]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Limosilactobacillus reuteri metabolites modulate immune pathways and intestinal barrier repair after 5 fluorouracil exposure.
Lasaviciute G, López Plana M, Sundberg Örtegren S, ..., Mata Forsberg M, Sverremark-Ekström E
Sci Rep 16 (1) - [2026-04-02; online 2026-04-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Nanoscale Podocyte Morphometrics Predict Disease Progression in IgA Nephropathy
Ebbestad R, Fatehi A, Olauson H, ..., Lundberg S, Unnersjö-Jess D
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Integrated Microscopy Technologies Stockholm [Collaborative]
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Single-Cell Triomics Analysis of Tumor Cells Infiltrating Patient-Derived Breast Cancer Scaffolds
Filges S, Jonasson E, Leiva Arrabal MDC, ..., Ruff D, Ståhlberg A
Am. J. Pathol. 196 (4) 1016-1027 [2026-04-00; online 2026-04-00]
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Pre-diagnostic and diagnostic D-vitamin levels and risk of bladder cancer - A nested case-control study with follow-up at diagnosis
Hultdin J, Tellström A, Freyhult E, Landström M, Ljungberg B
Clinical Nutrition Open Science - (-) 100658 [2026-04-00; online 2026-04-00]
Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Pan-Continental Genomic Analysis of Eurasian Perch Uncovers Global Diversity Hotspots and Postglacial Recolonization Patterns.
Lichman V, Ozerov M, López ME, ..., Gross R, Vasemägi A
Ecol Evol 16 (-) e73502 [2026-04-00; online 2026-04-21]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Nasal gene expression shows a distinct signature in type 2-high asthma but not in type 2-low disease.
Karp T, Merid SK, Kermani NZ, ..., Guryev V, van den Berge M
J. Allergy Clin. Immunol. 157 (4) 879-889 [2026-04-00; online 2026-01-02]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Differential negative dominance by KCNA2 variants associated with global developmental delay suggests KCNA2 haploinsufficiency in humans.
Boon PX, Jauregi-Miguel A, Yasarbas SS, ..., Shillington A, Pantazis A
J Physiol 604 (8) 3413-3430 [2026-04-00; online 2026-03-31]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
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Development of Anti‐Inflammatory Extracellular Vesicles by Surface Expression of Syndecan‐4
Yu L, Bergqvist M, Park K, Lässer C, Lötvall J
J Extracell Vesicles 15 (4) e70266 [2026-04-00; online 2026-04-02]
Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Cell-specific DNA methylation in human alpha and beta cells regulates gene expression in type 2 diabetes.
Ofori JK, Ruhrmann S, Lindström A, ..., Bacos K, Ling C
Nat Metab 8 (4) 957-980 [2026-04-00; online 2026-04-24]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Bite-DNA Shows Substantial Browsing on Willows (Salix spp.) by North American Bison in Yellowstone National Park.
Jansson JL, Spitzer R, Brealey JC, Spong G
Ecol Evol 16 (4) e73354 [2026-04-00; online 2026-03-31]
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DOI Crossref
AlphaFold as a prior: experimental structure determination conditioned on a pretrained neural network
Fadini A, Li M, McCoy AJ, ..., Hekstra DR, AlQuraishi M
Nat Methods 23 (4) 785-795 [2026-04-00; online 2026-04-01]
Cryo-EM [Service]
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Klebsiella pneumoniae T6SS exacerbates gut inflammation promoting tumorigenesis
Fragkoulis K, Uusi-Mäkelä MI, Sanz G, ..., Peuget S, Aschtgen MS
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Spatial Proteomics [Service]
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Comparative Transcriptome Profiling of Nicotiana benthamiana Plants Infected with Potato Mop-Top Virus and Its Mutant Lacking a Gene for the 8K Protein Underlines the Role of Chloroplasts During Infection.
Roy S, Nemes K, Saripella GV, ..., Siddique AB, Savenkov EI
Mol. Plant Microbe Interact. - (-) MPMI10250146R [2026-03-31; online 2026-03-31]
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The genomic medicine center Karolinska 10-year report on genome sequencing for rare diseases and a strategy for stepwise clinical implementation.
Lindstrand A, Lagerstedt-Robinson K, Jemt A, ..., Wirta V, Wedell A
Genome Med 18 (1) - [2026-03-30; online 2026-03-30]
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PubMed DOI Crossref
Quantitative proteomic and functional comparison of extracellular vesicles from multiple adipose tissue mesenchymal stem cell donors.
Park KS, Ha DH, Lee JH, ..., Cho BS, Lötvall J
Extracell Vesicles Circ Nucleic Acids. 7 (1) 425-440 [2026-03-30; online 2026-03-30]
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Medical facemask waste alters detritus decomposition and fungal communities in a freshwater pond.
Kong ZH, Stangl M, Oester R, ..., Bundschuh M, Mckie BG
Sci Rep 16 (1) - [2026-03-30; online 2026-03-30]
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Contrasting population genomic structuring of northern pike ( Esox lucius L.) in fresh‐ and brackish water environments: Implications for management and conservation
Diaz‐Suarez A, López M, Sundblad G, Vasemägi A
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Tumor-infiltrating immature innate lymphoid cells in colorectal cancer are biased toward ILC1/tissue-resident NK cell differentiation.
Marchalot A, Ljunggren M, Stamper C, ..., Nordenvall C, Mjösberg J
Nat Commun 17 (1) - [2026-03-27; online 2026-03-27]
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Analysis of medieval burials from Ibiza reveals genetic and pathogenic diversity during the Islamic period.
Rodríguez-Varela R, Pochon Z, Mas-Sandoval A, ..., Schlebusch CM, Götherström A
Nat Commun 17 (1) - [2026-03-26; online 2026-03-26]
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Temporal genomics reveals widespread but unexpected consequences of a bottleneck in the Scandinavian brown bear
Lindahl A, Lord E, Chacón-Duque JC, ..., Dalén L, Feinauer IS
R. Soc. open sci. 13 (3) - [2026-03-25; online 2026-03-25]
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Ribonuclease 4 Functions in Nociceptor-Mediated Nerve Homeostasis.
Feng X, Zhang K, Techameena P, ..., Gurumurthy CB, Hadjab S
Nat Commun 17 (1) - [2026-03-24; online 2026-03-24]
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Tissue-layer-resolved proteome landscape of Crohn's disease strictures highlights potential drivers of fibrosis progression.
Alfredsson J, Sihlbom Wallem C, Östling M, ..., Bexe-Lindskog E, Wick MJ
JCI Insight 11 (6) - [2026-03-23; online 2026-02-10]
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Filifactor alocis FtxA blocks inflammation and apoptosis pathways in monocytic cells.
Razooqi Z, Bao K, Yabrag A, ..., Nadeem A, Oscarsson J
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Electrochemical measurements at human iPSC-derived FOXA2 dopaminergic neurons suggest a role for partial release in presynaptic plasticity.
Gu C, Lork A, Majdi S, ..., Ernst C, Ewing AG
QRB Discovery 7 (-) e3 [2026-03-23; online 2026-03-23]
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Genetic predisposition to coffee consumption and the association with the early risk of atherosclerosis.
Qiao X, Toma VW, Wang J, ..., Zhong W, Iredahl F
Sci Rep 16 (1) - [2026-03-22; online 2026-03-22]
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Avoiding Mitochondrial Apoptosis by the Bcl-2-Driven Bax Oligomerization on Membrane Surfaces
Ayscough SE, Clifton LA, Ådén J, ..., Wacklin-Knecht HP, Gröbner G
ACS Chem. Biol. 21 (3) 565-576 [2026-03-20; online 2026-02-18]
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Transcription factor NFYA directs male meiotic entry by regulating accessible chromatin at meiotic promoters in mice
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Single-nucleus epigenomic profiling of the adult human central nervous system unveils epigenetic memory of developmental programs.
Kabbe M, Agirre E, Carlström KE, ..., Williams A, Castelo-Branco G
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Sex chromosome evolution mediated by a large inversion and a possible switch of the sex determination gene.
Mao X, Rafati N, Tellgren-Roth C, Ingvarsson PK, Karrenberg S
Genome Biol. 27 (1) - [2026-03-19; online 2026-03-19]
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Mapping the human chemical exposome for public health
David A, Lennon S, Mercier F, ..., Le Bizec B, Samson M
Nat Med - (-) - [2026-03-18; online 2026-03-18]
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Glioma-induced DNMT3A reduction in microglia promotes an anti-tumoral phenotype.
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FGFR signaling establishes spatial gradients of secretory cell identities along the airway proximal-distal axis.
Sountoulidis A, Theelke J, Liontos A, ..., Bellusci S, Samakovlis C
Nat Commun 17 (1) - [2026-03-18; online 2026-03-18]
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The population structure in the Baltic herring reflects natural selection and local adaptation.
Goodall J, Pettersson ME, Andersson A, ..., Andersson L, Laikre L
Proc. Natl. Acad. Sci. U.S.A. 123 (11) e2526500123 [2026-03-17; online 2026-03-09]
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Genomic identification and complete mitochondrial recovery of a Late Holocene porcupine (Erethizon dorsatum) mummy from Yukon permafrost
Selvatici S, Jin C, Zazula G, ..., Díez-del-Molino D, Oteo-García G
Sci Rep 16 (1) - [2026-03-17; online 2026-03-17]
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Chen A, Ruiz-Ruano FJ, Contreras-López O, ..., Suh A, Pei Y
Heredity (Edinb) - (-) - [2026-03-16; online 2026-03-16]
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Chemical Biology Consortium Sweden [Collaborative]
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Chemical Proteomics [Technology development]
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Better reporting is better science: Community-defined minimal reporting requirements for light microscopy.
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Virology 616 (-) 110789 [2026-03-00; online 2026-01-07]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
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NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Laurén I, Kostakis A, Lord M, ..., Hansson P, Mangsbo S
International Journal of Biological Macromolecules 352 (-) 151135 [2026-03-00; online 2026-02-28]
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Swedish NMR Centre [Collaborative]
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Hazarika A, Huang L, Figueira J, Babaahmadi A
Cement and Concrete Research 201 (-) 108086 [2026-03-00; online 2026-03-00]
Swedish NMR Centre [Collaborative]
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Sci Rep 16 (1) 6357 [2026-02-12; online 2026-02-12]
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Integrated Microscopy Technologies Stockholm [Service]
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NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Nat Commun 17 (1) - [2026-02-05; online 2026-02-05]
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Cell Death Dis 17 (1) 209 [2026-02-04; online 2026-02-04]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Nano Lett. 26 (4) 1321-1326 [2026-02-04; online 2026-01-22]
Integrated Microscopy Technologies Stockholm [Technology development]
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Nat Commun 17 (1) 1149 [2026-02-02; online 2026-02-02]
Swedish NMR Centre [Service]
PubMed DOI Crossref
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Wang T, Opoku H, Li M, ..., Wang J, Kou W
ACS Appl Bio Mater 9 (3) 1499-1508 [2026-02-02; online 2026-01-13]
Cryo-EM [Service]
PubMed DOI Crossref
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Seidel L, Li S, Hanna-Elias S, ..., Ketzer M, Dopson M
Environ. Microbiol. 28 (2) e70256 [2026-02-00; online 2026-02-19]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Dahl L, Bendes A, Álvez MB, ..., Roxhed N, Schwenk JM
iScience 29 (2) 114611 [2026-02-00; online 2026-02-00]
NGI Short read [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Collaborative]
DOI Crossref
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Chemical Biology Consortium Sweden [Collaborative]
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Albacarcin V adds EPLIN as a novel and promising target for the treatment of female cancers and pediatric medulloblastoma.
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Chemical Biology Consortium Sweden [Collaborative]
PubMed DOI Crossref
SOX21 suppresses glioblastoma growth by repressing AP-1 activity
Rrapaj E, Yuan J, Kurtsdotter I, ..., Bergsland M, Muhr J
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Ratios of CSF proteins reflect cognitive function in ALS.
Öijerstedt L, Mravinacová S, Olofsson J, ..., Månberg A, Ingre C
Alzheimers Res Ther 18 (1) - [2026-01-31; online 2026-01-31]
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Comprehensive profiling of CRISPR/dCas9 epigenome editors indicates a complex link between on and off target effects
Pahlevan Kakhki M, Rangani F, Ewing E, ..., Kular L, Jagodic M
Genome Biol. 27 (1) - [2026-01-31; online 2026-01-31]
NGI SNP genotyping [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Skeletal Muscle Microbiopsies in Children and Adults-Tolerability, Sample Yield, and Analyzability.
Högelin ER, Edman S, Jannig PR, ..., von Walden F, Fornander L
Muscle Nerve - (-) - [2026-01-30; online 2026-01-30]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Mixed gangliocytoma-pituitary neuroendocrine tumour: clinical, immunohistochemical, and molecular genetic profiles in a series of four patients.
Dalakas K, Engström BE, Tebani A, ..., Ragnarsson O, Casar-Borota O
Acta Neuropathol Commun 14 (1) - [2026-01-30; online 2026-01-30]
Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]
PubMed DOI Crossref
Single-Cell Comparison of Small Intestinal Neuroendocrine Tumors and Enterochromaffin Cells from Two Patients.
Axling F, Barazeghi E, Hellman P, ..., Backman S, Stålberg P
Cancers (Basel) 18 (3) - [2026-01-29; online 2026-01-29]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Thörnqvist L, Franciskovic E, Godzwon M, ..., Levander F, Ohlin M
Commun Biol 9 (1) - [2026-01-28; online 2026-01-28]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
DOI Crossref
A study of k-mer patterns within DNA molecules sequenced from a chondrite
Farage C, Bachelet I
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Ancient DNA [Service]
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Effects of incrementally increased plant-based protein intake on gut microbiota and inflammatory-metabolic biomarkers in healthy adults.
Prado S, Kamm A, Dannenberg K, ..., Marques TM, Brummer RJ
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Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]
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NUP98 regulates orthoflavivirus replication through interaction with vRNA and can be targeted for antiviral purposes.
Peters MBA, Lindqvist R, Madhu P, ..., Ivarsson Y, Överby AK
Nucleic Acids Res. 54 (3) - [2026-01-22; online 2026-01-27]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Anoctamin-2-specific T cells link Epstein-Barr virus to multiple sclerosis.
Thomas OG, Rykaczewska U, Galešić M, ..., Guerreiro-Cacais AO, Olsson T
Cell 189 (2) 585-602.e38 [2026-01-22; online 2026-01-13]
Autoimmunity and Serology Profiling [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
Genetiska släktskapsanalyser och individerna från Riddarholmskyrkan (Magnus Ladulås grav: om sökandet i Riddarholmskyrkan)
Malmström H
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Ancient DNA [Service]
PubMed DOI Crossref
Draft assemblies for 177 bird species enhance genus-level coverage
Chen G, Wang S, Bilyeli Øksnebjerg D, ..., Gilbert MTP, Zhang G
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NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Morphology-modified contributions of electronic transitions to the optical response of plasmonic nanoporous gold metamaterial.
Tapani T, Pettersson JM, Henriksson N, ..., Garoli D, Maccaferri N
Nat Commun 17 (1) 829 [2026-01-20; online 2026-01-20]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Integrative Epigenomic and Transcriptomic Profiling Define Malignancy- and Cluster-Specific Signatures in Pheochromocytomas and Paragangliomas
Tabebi M, Łysiak M, Gimm O, Söderkvist P
Cells 15 (2) 198 [2026-01-20; online 2026-01-20]
Clinical Genomics [Service] Clinical Genomics Linköping [Collaborative]
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Cryo-electron tomography reveals coupled flavivirus replication, budding and maturation.
Dahmane S, Schexnaydre E, Zhang J, ..., Överby AK, Carlson LA
Nat Commun 17 (1) 828 [2026-01-20; online 2026-01-20]
Cryo-EM [Collaborative]
Results of Archaeological Research on Burials at St. George’s Church in Gokhnari
Sulkhanishvili D, Ioramashvili S, Mshvildadze M, Goguadze D, Burjanadze G
Chronos 6 (-) 220–246 [2026-01-15; online 2026-01-15]
Ancient DNA [Service]
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In situ mapping of activated PDGFRβ defines a prognostic discrepancy between histological subtypes of NSCLC.
Lindberg A, Hellberg L, Grandon A, ..., Micke P, Strell C
Cell Commun Signal 24 (1) 55 [2026-01-15; online 2026-01-15]
BioImage Informatics [Collaborative] Bioinformatics (NBIS) [Collaborative]
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The long noncoding RNA VIM-AS1 and nucleoporin Nup358/RanBP2 regulate SMAD nuclear accumulation during TGF-β signaling.
Rodrigues-Junior DM, Ali MM, Itoh Y, ..., Heldin CH, Moustakas A
Nucleic Acids Res. 54 (2) - [2026-01-14; online 2026-01-20]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Phylum-wide propionate degradation and its potential connection to poly-gamma-glutamate biosynthesis in Candidatus Cloacimonadota phylum.
Calusinska M, Herold M, Klimek D, ..., Delfosse P, Goux X
ISME J 20 (1) - [2026-01-14; online 2026-03-18]
Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]
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Metabolic interactions between bacterial co-isolates from catheter-associated urinary tract infections
Sokol D, Rzhepishevska O, Marynova I, ..., Antti H, Ramstedt M
Sci Rep 16 (1) 2061 [2026-01-14; online 2026-01-14]
Chemical Biology Consortium Sweden [Service]
PubMed DOI Crossref
Dealing with phosphorus deficiency: contrasting strategies in marine phytoplankton and bacteria
Delgadillo-Nuño E, Teira E, Fernández E, ..., Pinhassi J, Martínez-García S
ISME COMMUN. 6 (1) ycag035 [2026-01-14; online 2026-02-20]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Cefiderocol resistance genes identified in environmental samples using functional metagenomics.
Gschwind R, Bonnet M, Abramova A, ..., Bengtsson-Palme J, Ruppé E
ISME J 20 (1) - [2026-01-14; online 2026-01-28]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Active methylotrophic methanogenesis by a microbial consortium enriched from a terrestrial meteorite impact crater.
van Dam F, Westmeijer G, Rezaei Somee M, ..., Dopson M, Drake H
MBio 17 (1) e0301725 [2026-01-14; online 2025-11-25]
NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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A combinatorial transcription factor screening platform for immune cell reprogramming.
Kurochkin I, Altman AR, Caiado I, ..., Theis FJ, Pereira CF
Cell Syst - (-) 101457 [2026-01-14; online 2026-01-14]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Structural basis for late maturation steps of mitochondrial respiratory chain complex IV within the human respirasome.
Nguyen MD, Sierra-Magro A, Singh V, ..., Barrientos A, Rorbach J
Nat Commun - (-) - [2026-01-10; online 2026-01-10]
Cryo-EM [Service]
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Proteomic and Lipidomic Profiling of Immune Cell‐Derived Subpopulations of Extracellular Vesicles
Lischnig A, Karimi N, Larsson P, ..., Olin A, Lässer C
Proteomics - (-) e70096 [2026-01-10; online 2026-01-10]
Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
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Plasma extracellular vesicles reflect response and prognosis in patients with breast cancer undergoing neoadjuvant treatment.
Ekström K, Riaz N, Larsson K, ..., Linderholm B, Olofsson Bagge R
Breast Cancer Res. 28 (1) 22 [2026-01-09; online 2026-01-09]
Integrated Microscopy Technologies Gothenburg [Service]
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Marine-Inspired Antimicrobial Peptides Disrupt Gene Expression at the DNA Level.
Beyer LI, Thoma J, Acha Alarcon L, ..., Inda-Díaz JS, Tietze AA
ACS Infect Dis 12 (1) 447-459 [2026-01-09; online 2025-12-09]
Glycoproteomics and MS Proteomics [Service]
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Long-read genome sequencing enhances diagnostics of pediatric neurological disorders.
Ek M, Kvarnung M, Ten Berk de Boer E, ..., Eisfeldt J, Lindstrand A
Genome Med 18 (1) 12 [2026-01-09; online 2026-01-09]
Clinical Genomics [Service] Clinical Genomics Stockholm [Service]
PubMed DOI Crossref
Quantitative optical nanoscopy of mitochondrial-derived vesicles in neurons classifies pre-peroxisomal and clearing organelles.
Coceano G, Alvelid J, Damenti M, ..., Rorbach J, Testa I
Nat Commun 17 (1) 419 [2026-01-08; online 2026-01-08]
Integrated Microscopy Technologies Stockholm [Service]
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Tirzepatide reduces alcohol drinking and relapse-like behaviours in rodents.
Edvardsson CE, Adermark L, Gottlieb S, ..., Becker HC, Jerlhag E
EBioMedicine 124 (-) 106119 [2026-01-07; online 2026-01-07]
Glycoproteomics and MS Proteomics [Collaborative]
PubMed DOI Crossref
Single-Cell Omics Analysis of Human Basophils Reveals Two Transcriptionally Distinct Populations.
Papavasileiou S, Mo J, Boey D, ..., Nilsson G, Dahlin JS
Allergy - (-) - [2026-01-07; online 2026-01-07]
NGI Long read [Collaborative] NGI Short read [Service] NGI Single cell [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Inflammatory protein profiles and shunt response in iNPH
Braun M, Ekblom M, Freyhult E, ..., Kultima K, Virhammar J
Fluids Barriers CNS 23 (1) 5 [2026-01-07; online 2026-01-07]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
PubMed DOI Crossref
TGFβ signaling mediates microglial resilience to spatiotemporally restricted myelin degeneration.
Zhu K, Liu Y, Min JH, ..., Harris RA, Lund H
Nat. Neurosci. - (-) - [2026-01-02; online 2026-01-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Genome Shows no Recent Inbreeding in Near-Extinction Woolly Rhinoceros Sample Found in Ancient Wolf's Stomach.
Guðjónsdóttir SM, Lord E, Pochon Z, ..., Dalén L, Chacón-Duque JC
Genome Biol Evol 18 (1) - [2026-01-02; online 2026-01-14]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Acute high-dose irradiation disrupts cell adhesion and Silk-Ovarioid formation in human primary ovarian cells
Deligiannis SP, Li T, Moussaud-Lamodière E, ..., Salumets A, Di Nisio V
J Ovarian Res 19 (1) - [2026-01-02; online 2026-01-02]
NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Using Historic and Contemporary Genomes to Assess the Genetic Consequences of a Population Decline in an Endangered Tern Population.
Schnelle A, Rollins RE, Müller IA, ..., Bouwhuis S, Liedvogel M
Evol Appl 19 (1) e70192 [2026-01-00; online 2026-01-02]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Long-term heating differently impacts diversity and seasonal dynamics of prokaryotes and micro-eukaryotes in Baltic Sea coastal biofilm communities.
Svendsen IK, Rula I, Nilsson E, ..., Forsman A, Salis RK
ISME COMMUN. 6 (1) ycag101 [2026-01-00; online 2026-04-14]
NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Inhibitory effect of oestradiol on the cardiac KV7.1/KCNE1 channel is species dependent.
Linhart VA, Dauga L, Liin SI
Exp. Physiol. 111 (1) 54-68 [2026-01-00; online 2025-05-05]
Clinical Genomics [Service] Clinical Genomics Linköping [Service]
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Genetic risk factors and clinical manifestations of systemic lupus erythematosus: Large-scale analysis of genetic predisposition and disease subtypes.
Reid S, Sandling JK, Pucholt P, ..., Rönnblom L, Leonard D
J. Intern. Med. 299 (1) 95-108 [2026-01-00; online 2025-11-07]
NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
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Exploring the Substitution of the C21-OAc Moiety in [11]Cytochalasans: Synthesis and Evaluation of Fluorophore Conjugates.
Kagho MD, Schmidt K, Chakrabarti A, ..., Stradal TE, Klahn P
ChemBioChem 27 (1) e202500794 [2026-01-00; online 2025-11-27]
Glycoproteomics and MS Proteomics [Service]
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Dynamic interaction of the Yersinia pseudotuberculosis type three secretion system proteins LcrV and LcrG.
Mangu JCK, Rogne P, Mattsson J, ..., Francis MS, Wolf-Watz M
Protein Sci. 35 (1) e70400 [2026-01-00; online 2025-12-22]
Structural Proteomics [Collaborative] Swedish NMR Centre [Service]
DOI Crossref
Consistent Species Richness Patterns but Not Richness Estimates Based on Both ASV and OTU Inference Methods on ITS2 ‐Based Soil Fungal Communities
Kyaschenko J, Tångrot J, Dahlberg A, Lindahl BD, Rosling A
Environmental DNA 8 (1) - [2026-01-00; online 2026-01-26]
NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]
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Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis
Vaivade A, Sreenivasan AP, Erngren I, ..., Burman J, Kultima K
Environment International 207 (-) 109993 [2026-01-00; online 2026-01-00]
Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]
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Cellular Hallmarks From Volume Electron Microscopy Reveal Developmental Progression of Plasmodium Ookinetes.
Darif N, Rheinnecker M, Hildenbrand K, ..., Schwab Y, Frischknecht F
Adv Sci (Weinh) 13 (4) e08250 [2026-01-00; online 2025-09-30]
Integrated Microscopy Technologies Umeå [Collaborative]
PubMed DOI Crossref
Benchmarking of single nuclei RNA-seq methods on human post-mortem brain tissue
Nikouei K, Gruyters E, Memic F, Stockmeier CA, Hjerling-Leffler J
Genomics 118 (1) 111184 [2026-01-00; online 2026-01-00]
NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]
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Niobium-oxide-based octahedral molecular sieves as novel anode materials for sodium-ion batteries
Rao YB, Tavajohi N, Ohlin CA
Mater. Adv. 7 (3) 1691-1703 [2026-00-00; online 2026-00-00]
Integrated Microscopy Technologies Umeå [Service]
DOI Crossref
Electron Tomography-Based Reconstruction of Extracellular Vesicles in Tissue
Micaroni M, Berndtsson J, Urzì O, Crescitelli R
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Integrated Microscopy Technologies Gothenburg [Technology development]
SciLifeLab Data Centre
Publications 9.5.1