Publications 2026

Mitochondria serve as a holdout compartment for aggregation-prone proteins hindering efficient degradation.

Gierisch ME, Barchi E, Marogna M, ..., Salomons FA, Dantuma NP

Nat Commun 17 (1) - [2026-05-07; online 2026-05-07]

CRISPR Functional Genomics [Service]

Spatiotemporal analysis reveals distinct inflammatory programs underlying chronic colitis.

Fransson J, Sorini C, Castillo F, ..., Smith P, Villablanca EJ

Immunity - (-) - [2026-05-06; online 2026-05-06]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Neuroinflammation and neurodegeneration trigger a specific splice form of ribosomal protein S24.

Magadi SS, Jonson M, Lucena PB, ..., Heneka MT, Jackson WS

Brain - (-) - [2026-05-06; online 2026-05-06]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Ribosome dynamics during skeletal muscle repair and regeneration in mice and humans.

Cui M, Edman S, Jude B, ..., Schilcher J, von Walden F

Am. J. Physiol., Cell Physiol. - (-) - [2026-05-01; online 2026-05-01]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Process development and pilot-scale validation of γ-valerolactone pretreatment for softwood biorefining

Dixit P, Benavente V, Gustafsson T, ..., Jönsson LJ, Martín C

Biomass and Bioenergy 208 (-) 108846 [2026-05-00; online 2026-05-00]

Machine learning based multi-omics analysis reveals key molecular determinants of Parkinson's disease severity.

Jin H, Meng L, Yulug B, ..., Uhlén M, Mardinoglu A

Neurobiol. Dis. 225 (-) 107424 [2026-04-30; online 2026-04-30]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Divergent cis-regulatory haplotypes at Tlr2 are associated with immune responsiveness.

Nandakumar M, Lundberg M, Nouri M, ..., Carlsson F, Råberg L

Mol. Biol. Evol. - (-) - [2026-04-29; online 2026-04-29]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Breeding for climate adaptation: genetic variation and genomic selection for drought response in Scots pine.

Chaudhary R, Estravis Barcala M, Fundova I, ..., Chen ZQ, Wu HX

BMC Genomics 27 (1) - [2026-04-27; online 2026-04-27]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Longitudinal protein profiling of blood during childhood into early adulthood.

Bergström S, Björkander S, Bueno Álvez M, ..., Nilsson P, Melén E

Nat Commun 17 (1) - [2026-04-22; online 2026-04-22]

NGI Proteomics [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Ancient environmental genome reveals a migratory brown bear individual in Early Holocene Scandinavia.

Johnson E, Feinauer IS, Regnéll C, ..., Heintzman PD, Linderholm A

Proc. Natl. Acad. Sci. U.S.A. 123 (16) e2527944123 [2026-04-21; online 2026-04-13]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Rare regulatory mutations disrupt mesenchymal molecular programs driving endocardial cushion formation in bicuspid aortic valve.

Zhigulev A, Buyan A, Lázár E, ..., Björck HM, Sahlén P

Nat Commun 17 (1) - [2026-04-18; online 2026-04-18]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

RUVBL1 and RUVBL2 are druggable MYC effector regulators in neuroblastoma cells.

Siaw JT, Claeys A, Lai WY, ..., Palmer RH, Van den Eynden J

iScience 29 (4) 115236 [2026-04-17; online 2026-03-05]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genomic insights into fragmentation and translocation in European green toads.

Walderich LM, Susanto AW, Svensson M, ..., Rödin-Mörch P, Höglund J

iScience 29 (4) 115395 [2026-04-17; online 2026-03-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Minor hemolysin-coregulated proteins (Hcp) form heteromeric complexes and mediate effector secretion in Bacteroidales type VI secretion systems.

San-Miguel SG, Hillier JB, Saleh Al-Ammari MK, ..., Uhlin BE, Cisneros DA

J. Biol. Chem. - (-) 111464 [2026-04-16; online 2026-04-16]

Structural Proteomics [Service]

Dabigatran Concentrations in an Actively Breastfeeding Mother-Infant Dyad: Extending the Evidence for Oral Thromboprophylaxis Postpartum.

Green RW, Saleh A, Baranczewski P

Am. J. Hematol. - (-) - [2026-04-16; online 2026-04-16]

Drug Discovery and Development [Collaborative]

Evidence for cable bacteria inhabiting deep in anoxic sediment reveals a novel ecological niche.

Fonseca A, Hermans M, Nascimento FJA, ..., Gustafsson BG, Humborg C

Environ Microbiome 21 (1) - [2026-04-15; online 2026-04-15]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A transcriptional atlas of the pubertal human growth plate reveals two populations of stem cells and direct effect of growth hormone.

Chu NTL, Dregval O, Zaman F, ..., Adameyko I, Chagin AS

Sci Transl Med 18 (845) eadw3590 [2026-04-15; online 2026-04-15]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Dimethyl Fumarate, But Not Rituximab, Reduces Serum GFAP Levels and PIRMA in Relapsing–Remitting MS

Shawket F, Lycke J, Salzer J, ..., Burman J, Svenningsson A

Ann Clin Transl Neurol - (-) - [2026-04-12; online 2026-04-12]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

A Phytophthora infestans CRN1-derived small RNA is predicted to target the potato immune regulator EDS1.

Singh S, Hu X, Dixelius C

Front Plant Sci 17 (-) 1791978 [2026-04-10; online 2026-04-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

TNFα signaling in radiation-induced chronic bowel dysfunction suggests therapeutic potential for IBD biologics

Devarakonda S, Patel P, Toft Morén A, ..., Villablanca EJ, Bull C

Mol. Med. 32 (1) - [2026-04-09; online 2026-04-09]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Potent Neuronal Nicotinamide Adenine Dinucleotide-Boosting Tetrahydroquinoxalines: Structure-Activity Relationships and Early Drug Metabolism and Pharmacokinetics Evaluation.

Cuřínová P, Jöe M, Cesar F, ..., Brancale A, Williams PA

ACS Med Chem Lett 17 (4) 916-924 [2026-04-09; online 2026-03-04]

Drug Discovery and Development [Service]

Lectin pathway of complement in SLE: MAP-1 as a marker of haematological manifestations and elevated type I interferon activity.

Lindelöf L, Garred P, Hong MG, ..., Svenungsson E, Eriksson O

Lupus Sci Med 13 (1) - [2026-04-09; online 2026-04-09]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Single-cell analysis of inhibitory efferent neurons of the zebrafish lateral line.

Manuel R, Ahemaiti A, Tuz-Sasik MU, Boije H

PLoS ONE 21 (4) e0346255 [2026-04-08; online 2026-04-08]

Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service]

Proviral NUP153 binding to viral proteins and RNA regulates structural-nonstructural protein ratios in orthoflavivirus infection.

Peters MBA, Lindqvist R, Kassa E, ..., Lundmark R, Överby AK

Nat Commun - (-) - [2026-04-08; online 2026-04-08]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Neoadjuvant palbociclib and endocrine therapy versus chemotherapy in ER + /HER2- breast cancer: a randomized phase II trial.

Matikas A, Tzoras E, Sarafidis M, ..., Hatschek T, Foukakis T

Nat Commun 17 (1) - [2026-04-08; online 2026-04-08]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Generalist phyllosphere taxa dominate microbial communities on macrophytes across a natural salinity gradient

Herlemann DPR, Riedinger DJ, Fenández-Juárez V, ..., Rakowski M, Labrenz M

Environ Microbiome 21 (1) - [2026-04-04; online 2026-04-04]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Limosilactobacillus reuteri metabolites modulate immune pathways and intestinal barrier repair after 5 fluorouracil exposure.

Lasaviciute G, López Plana M, Sundberg Örtegren S, ..., Mata Forsberg M, Sverremark-Ekström E

Sci Rep 16 (1) - [2026-04-02; online 2026-04-02]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Single-Cell Triomics Analysis of Tumor Cells Infiltrating Patient-Derived Breast Cancer Scaffolds

Filges S, Jonasson E, Leiva Arrabal MDC, ..., Ruff D, Ståhlberg A

Am. J. Pathol. 196 (4) 1016-1027 [2026-04-00; online 2026-04-00]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Pre-diagnostic and diagnostic D-vitamin levels and risk of bladder cancer - A nested case-control study with follow-up at diagnosis

Hultdin J, Tellström A, Freyhult E, Landström M, Ljungberg B

Clinical Nutrition Open Science - (-) 100658 [2026-04-00; online 2026-04-00]

Bioinformatics (NBIS) [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Pan-Continental Genomic Analysis of Eurasian Perch Uncovers Global Diversity Hotspots and Postglacial Recolonization Patterns.

Lichman V, Ozerov M, López ME, ..., Gross R, Vasemägi A

Ecol Evol 16 (-) e73502 [2026-04-00; online 2026-04-21]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Differential negative dominance by KCNA2 variants associated with global developmental delay suggests KCNA2 haploinsufficiency in humans.

Boon PX, Jauregi-Miguel A, Yasarbas SS, ..., Shillington A, Pantazis A

J Physiol 604 (8) 3413-3430 [2026-04-00; online 2026-03-31]

Clinical Genomics [Service] Clinical Genomics Linköping [Service]

Contrasting population genomic structuring of northern pike ( Esox lucius L.) in fresh‐ and brackish water environments: Implications for management and conservation

Diaz‐Suarez A, López M, Sundblad G, Vasemägi A

J. Fish Biol. - (-) - [2026-03-30; online 2026-03-30]

NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Tumor-infiltrating immature innate lymphoid cells in colorectal cancer are biased toward ILC1/tissue-resident NK cell differentiation.

Marchalot A, Ljunggren M, Stamper C, ..., Nordenvall C, Mjösberg J

Nat Commun 17 (1) - [2026-03-27; online 2026-03-27]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Analysis of medieval burials from Ibiza reveals genetic and pathogenic diversity during the Islamic period.

Rodríguez-Varela R, Pochon Z, Mas-Sandoval A, ..., Schlebusch CM, Götherström A

Nat Commun 17 (1) - [2026-03-26; online 2026-03-26]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Temporal genomics reveals widespread but unexpected consequences of a bottleneck in the Scandinavian brown bear

Lindahl A, Lord E, Chacón-Duque JC, ..., Dalén L, Feinauer IS

R. Soc. open sci. 13 (3) - [2026-03-25; online 2026-03-25]

Ancient DNA [Collaborative] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Centromeric instability and chromoanasynthesis observed in nine supernumerary marker chromosomes resolved with long-read genome sequencing

Bilgrav Saether K, Salazar Mantero A, Ek M, ..., Eisfeldt J, Lindstrand A

Genome Res. 36 (4) 661-670 [2026-03-25; online 2026-03-25]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Studying Macromolecular Composition in Cell-Cell Interfaces Using 3D Membrane Reconstitution Systems.

Ragaller F, Schneider AM, Sjule E, ..., Achour A, Sezgin E

Adv Sci (Weinh) - (-) e22443 [2026-03-24; online 2026-03-24]

Integrated Microscopy Technologies Stockholm [Service]

Ribonuclease 4 Functions in Nociceptor-Mediated Nerve Homeostasis.

Feng X, Zhang K, Techameena P, ..., Gurumurthy CB, Hadjab S

Nat Commun 17 (1) - [2026-03-24; online 2026-03-24]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Avoiding Mitochondrial Apoptosis by the Bcl-2-Driven Bax Oligomerization on Membrane Surfaces

Ayscough SE, Clifton LA, Ådén J, ..., Wacklin-Knecht HP, Gröbner G

ACS Chem. Biol. 21 (3) 565-576 [2026-03-20; online 2026-02-18]

Transcription factor NFYA directs male meiotic entry by regulating accessible chromatin at meiotic promoters in mice

Säflund M, Askari M, Eghbali A, ..., Yu T, Özata DM

EMBO J. - (-) - [2026-03-19; online 2026-03-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Single-nucleus epigenomic profiling of the adult human central nervous system unveils epigenetic memory of developmental programs.

Kabbe M, Agirre E, Carlström KE, ..., Williams A, Castelo-Branco G

Nat. Neurosci. - (-) - [2026-03-19; online 2026-03-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Sex chromosome evolution mediated by a large inversion and a possible switch of the sex determination gene.

Mao X, Rafati N, Tellgren-Roth C, Ingvarsson PK, Karrenberg S

Genome Biol. - (-) - [2026-03-19; online 2026-03-19]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Mapping the human chemical exposome for public health

David A, Lennon S, Mercier F, ..., Le Bizec B, Samson M

Nat Med - (-) - [2026-03-18; online 2026-03-18]

Exposomics [Collaborative]

FGFR signaling establishes spatial gradients of secretory cell identities along the airway proximal-distal axis.

Sountoulidis A, Theelke J, Liontos A, ..., Bellusci S, Samakovlis C

Nat Commun 17 (1) - [2026-03-18; online 2026-03-18]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

The population structure in the Baltic herring reflects natural selection and local adaptation.

Goodall J, Pettersson ME, Andersson A, ..., Andersson L, Laikre L

Proc. Natl. Acad. Sci. U.S.A. 123 (11) e2526500123 [2026-03-17; online 2026-03-09]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genomic identification and complete mitochondrial recovery of a Late Holocene porcupine (Erethizon dorsatum) mummy from Yukon permafrost

Selvatici S, Jin C, Zazula G, ..., Díez-del-Molino D, Oteo-García G

Sci Rep 16 (1) - [2026-03-17; online 2026-03-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Paralog-aware assembly and filtering strategies reveal minimal nucleotide variation on the macro germline-restricted chromosome of the zebra finch.

Chen A, Ruiz-Ruano FJ, Contreras-López O, ..., Suh A, Pei Y

Heredity (Edinb) - (-) - [2026-03-16; online 2026-03-16]

NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Persistent interferon signaling causes sensory neuron plasticity and pain before and during arthritis.

Su J, Zhang MD, Kupari J, ..., Holmdahl R, Ernfors P

Nat. Neurosci. - (-) - [2026-03-10; online 2026-03-10]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Whole genomes reveal subpopulations and isolation-by-distance patterns in the Norwegian lemming

Feinauer IS, Ravasini F, Lagerholm VK, ..., Angerbjörn A, Dalén L

BMC Biol. - (-) - [2026-03-06; online 2026-03-06]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

The HUNT study identifies host genetic factors reproducibly associated with human gut microbiota composition

Moksnes MR, Coward E, Nethander M, ..., Hveem K, Ohlsson C

Nat Genet 58 (3) 530-539 [2026-03-00; online 2026-02-13]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Resource Availability Modulates Gene Expression Across Life Stages in a Migratory Butterfly.

Shipilina D, Höök L, Näsvall K, ..., Talavera G, Backström N

Mol. Ecol. 35 (5) e70293 [2026-03-00; online 2026-03-09]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Optimizing T cell responses of targeted peptide antigen delivery by modulating antigen processing through amino acid exchange.

Laurén I, Kostakis A, Lord M, ..., Hansson P, Mangsbo S

International Journal of Biological Macromolecules 352 (-) 151135 [2026-03-00; online 2026-02-28]

Drug Discovery and Development [Service]

Mycelial biomass growth stage at death determines fungal necromass decay dynamics

Maillard F, Lopes Ramos D, Zhang B, ..., Persson P, Tunlid A

Soil Biology and Biochemistry 214 (-) 110079 [2026-03-00; online 2026-03-00]

Genome-wide association analyses highlight the role of the intestinal molecular environment in human gut microbiota variation.

Dekkers KF, Pertiwi K, Baldanzi G, ..., Orho-Melander M, Fall T

Nat. Genet. 58 (3) 540-549 [2026-03-00; online 2026-02-13]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Evolution of hydration in cement blends with incorporation of activated low-kaolinite clays: Insights into the preferred aluminum uptake by C-(A)-S-H

Hazarika A, Huang L, Figueira J, Babaahmadi A

Cement and Concrete Research 201 (-) 108086 [2026-03-00; online 2026-03-00]

Enrichment of Neural Crest Cells by Antibody Labeling and Flow Cytometry for Single-Cell Transcriptomics in a Lizard.

Pranter R, Patthey C, Feiner N

Evol Dev 28 (1) e70030 [2026-03-00; online 2026-02-19]

NGI Short read [Service] NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Discovering and protecting cryptic biodiversity: A case study of a previously undescribed, vulnerable bird species in Japan.

Saitoh T, Shipilina D, Xia C, ..., Olsson U, Alström P

PNAS Nexus 5 (3) pgag037 [2026-03-00; online 2026-03-17]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

An Equatorial Hemispheric Barrier Shapes the Diversification of Migratory Belenois Butterflies.

Janiczek A, Palahí A, Dapporto L, ..., Suchan T, Talavera G

Mol. Ecol. 35 (6) e70310 [2026-03-00; online 2026-03-20]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Novel activating SNRNP70-ALK fusion in congenital infant-type hemispheric glioma displays clinical response to lorlatinib: a case-report

Arthur C, Georgantzi K, de Ståhl TD, ..., Palmer R, Tham E

NPJ Precis Oncol 10 (1) - [2026-02-26; online 2026-02-26]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

The N-Myc MB0-MBI region interacts specifically and dynamically with the N-lobe of Aurora kinase A.

Hultman J, Morad V, Tanner E, ..., Ahlner A, Sunnerhagen M

Nat Commun 17 (1) - [2026-02-24; online 2026-02-24]

Structural Proteomics [Collaborative]

Silicone-Foam Passive Air Samplers for Combined Target and Nontarget Chemical Profiling and Toxicity Assessment of Airborne Exposomes

Sunyer-Caldú A, Xie H, Bonnefille B, ..., Papazian S, Martin JW

Environ. Sci. Technol. 60 (7) 5628-5644 [2026-02-24; online 2026-02-10]

Exposomics [Technology development]

Lipid‐Facilitated Opening of the ADAM10 Sheddase Revealed by Enhanced Sampling Simulations

Schahl A, Haloi N, Carroni M, ..., Delemotte L, Howard RJ

Adv Sci (Weinh) - (-) e15713 [2026-02-24; online 2026-02-24]

Integrated Microscopy Technologies Stockholm [Service]

Distinct radial glia subtypes regulate midbrain dopaminergic neuron development.

Ásgrímsdóttir ES, Bassini LF, Sun T, ..., Toledo EM, Arenas E

Nat. Neurosci. - (-) - [2026-02-16; online 2026-02-16]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Exploring microbial diversity using cell-size fractionated enrichment incubations from subsurface aquifers at Äspö, Sweden.

Westmeijer G, Turner S, Hevele P, ..., Bertilsson S, Dopson M

Commun Biol - (-) - [2026-02-14; online 2026-02-14]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Rare germline variants contribute to glioma predisposition: Whole-genome analysis of a regional cohort of glioma patients.

Rosenbaum A, Wibom C, Hammermeister Suger A, ..., Dahlin AM, Melin B

Neurooncol Adv 8 (1) vdag038 [2026-02-12; online 2026-02-12]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Efficacy of mebendazole in the spontaneous NZBxNZWF1 animal model of systemic lupus erythematosus.

Eloranta ML, Nygren P, Larsson R, ..., Rönnblom L, Fryknäs M

Sci Rep 16 (1) 6357 [2026-02-12; online 2026-02-12]

Drug Discovery and Development [Service]

Spatial overlap and temporal synchrony between guilds of insect hosts and parasitoids

van Dijk LJA, Goodsell RM, Andersson AF, ..., Roslin T, Tack AJM

Journal of Animal Ecology - (-) - [2026-02-10; online 2026-02-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genome Sequencing in 19 Families With Bladder Exstrophy and Epispadias Complex Indicates Involvement of the ADGR-Gene Family.

Nordenskjöld A, Alm S, Eisfeldt J, ..., Lindstrand A, Lagerstedt-Robinson K

Am. J. Med. Genet. A - (-) - [2026-02-10; online 2026-02-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

MYC modulates TOP2A diffusion to promote substrate detection and activity

Cameron DP, Jackson K, Loffreda A, ..., Mazza D, Baranello L

Nat Commun 17 (1) - [2026-02-09; online 2026-02-09]

Integrated Microscopy Technologies Stockholm [Service]

Targeted CSF metabolomics and conformal prediction improve diagnostic accuracy of normal pressure hydrocephalus.

Hofling U, Jakobsson J, Erngren I, ..., Kultima K, Virhammar J

Fluids Barriers CNS 23 (1) - [2026-02-07; online 2026-02-07]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Molecular interactome of HNRNPU reveals regulatory networks in neuronal differentiation and DNA methylation.

Oksanen M, Mastropasqua F, Mazan-Mamczarz K, ..., Gorospe M, Tammimies K

Nucleic Acids Res. 54 (4) - [2026-02-05; online 2026-02-12]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Dual-Color Expansion Microscopy of Membrane Proteins Using Bioorthogonal Labeling

Edwards S, Meineke B, Bauer S, ..., Elsässer S, Brismar H

Nano Lett. 26 (4) 1321-1326 [2026-02-04; online 2026-01-22]

Integrated Microscopy Technologies Stockholm [Technology development]

Mechanistic insights into PCBP1-driven unfolding of selected i-motif DNA at G1/S checkpoint.

Sengupta P, Gillet N, Obi I, Sabouri N

Nat Commun 17 (1) 1149 [2026-02-02; online 2026-02-02]

Swedish NMR Centre [Service]

Warming Causes a Decline in Baltic Sea Coastal Sediment Microbial Abundance.

Seidel L, Li S, Hanna-Elias S, ..., Ketzer M, Dopson M

Environ. Microbiol. 28 (2) e70256 [2026-02-00; online 2026-02-19]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Exploration of immune phenotypes in self-sampling citizens

Dahl L, Bendes A, Álvez MB, ..., Roxhed N, Schwenk JM

iScience 29 (2) 114611 [2026-02-00; online 2026-02-00]

NGI Short read [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Collaborative]

Experimental and machine learning-based exploration of repurposed drugs reveals chemical features underlying phospholipidosis

Kuzikov M, Kalman A, Karki R, ..., Gribbon P, Zaliani A

Patterns - (-) 101453 [2026-02-00; online 2026-02-00]

Chemical Biology Consortium Sweden [Collaborative]

SOX21 suppresses glioblastoma growth by repressing AP-1 activity

Rrapaj E, Yuan J, Kurtsdotter I, ..., Bergsland M, Muhr J

Cell Death Dis 17 (1) 191 [2026-01-31; online 2026-01-31]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Comprehensive profiling of CRISPR/dCas9 epigenome editors indicates a complex link between on and off target effects

Pahlevan Kakhki M, Rangani F, Ewing E, ..., Kular L, Jagodic M

Genome Biol. 27 (1) - [2026-01-31; online 2026-01-31]

NGI SNP genotyping [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Skeletal Muscle Microbiopsies in Children and Adults-Tolerability, Sample Yield, and Analyzability.

Högelin ER, Edman S, Jannig PR, ..., von Walden F, Fornander L

Muscle Nerve - (-) - [2026-01-30; online 2026-01-30]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Allergen-specific human IgE isolated through an allergen-agnostic pipeline—understanding immune response and allergen recognition

Thörnqvist L, Franciskovic E, Godzwon M, ..., Levander F, Ohlin M

Commun Biol 9 (1) - [2026-01-28; online 2026-01-28]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A study of k-mer patterns within DNA molecules sequenced from a chondrite

Farage C, Bachelet I

- - (-) - [2026-01-27; online 2026-01-27]

Ancient DNA [Service]

Effects of incrementally increased plant-based protein intake on gut microbiota and inflammatory-metabolic biomarkers in healthy adults.

Prado S, Kamm A, Dannenberg K, ..., Marques TM, Brummer RJ

Food Funct 17 (2) 942-956 [2026-01-26; online 2026-01-26]

Clinical Genomics [Collaborative] Clinical Genomics Örebro [Collaborative]

NUP98 regulates orthoflavivirus replication through interaction with vRNA and can be targeted for antiviral purposes.

Peters MBA, Lindqvist R, Madhu P, ..., Ivarsson Y, Överby AK

Nucleic Acids Res. 54 (3) - [2026-01-22; online 2026-01-27]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Anoctamin-2-specific T cells link Epstein-Barr virus to multiple sclerosis.

Thomas OG, Rykaczewska U, Galešić M, ..., Guerreiro-Cacais AO, Olsson T

Cell 189 (2) 585-602.e38 [2026-01-22; online 2026-01-13]

Autoimmunity and Serology Profiling [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genetiska släktskapsanalyser och individerna från Riddarholmskyrkan (Magnus Ladulås grav: om sökandet i Riddarholmskyrkan)

Malmström H

- - (-) - [2026-01-21]

Ancient DNA [Service]

Integrative Epigenomic and Transcriptomic Profiling Define Malignancy- and Cluster-Specific Signatures in Pheochromocytomas and Paragangliomas

Tabebi M, Łysiak M, Gimm O, Söderkvist P

Cells 15 (2) 198 [2026-01-20; online 2026-01-20]

Clinical Genomics [Service] Clinical Genomics Linköping [Collaborative]

Results of Archaeological Research on Burials at St. George’s Church in Gokhnari

Sulkhanishvili D, Ioramashvili S, Mshvildadze M, Goguadze D, Burjanadze G

Chronos 6 (-) 220–246 [2026-01-15; online 2026-01-15]

Ancient DNA [Service]

Metabolic interactions between bacterial co-isolates from catheter-associated urinary tract infections

Sokol D, Rzhepishevska O, Marynova I, ..., Antti H, Ramstedt M

Sci Rep 16 (1) 2061 [2026-01-14; online 2026-01-14]

Chemical Biology Consortium Sweden [Service]

Dealing with phosphorus deficiency: contrasting strategies in marine phytoplankton and bacteria

Delgadillo-Nuño E, Teira E, Fernández E, ..., Pinhassi J, Martínez-García S

ISME COMMUN. 6 (1) ycag035 [2026-01-14; online 2026-02-20]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

A combinatorial transcription factor screening platform for immune cell reprogramming.

Kurochkin I, Altman AR, Caiado I, ..., Theis FJ, Pereira CF

Cell Syst - (-) 101457 [2026-01-14; online 2026-01-14]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

Structural basis for late maturation steps of mitochondrial respiratory chain complex IV within the human respirasome.

Nguyen MD, Sierra-Magro A, Singh V, ..., Barrientos A, Rorbach J

Nat Commun - (-) - [2026-01-10; online 2026-01-10]

Cryo-EM [Service]

Proteomic and Lipidomic Profiling of Immune Cell‐Derived Subpopulations of Extracellular Vesicles

Lischnig A, Karimi N, Larsson P, ..., Olin A, Lässer C

Proteomics - (-) e70096 [2026-01-10; online 2026-01-10]

Glycoproteomics and MS Proteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]

Marine-Inspired Antimicrobial Peptides Disrupt Gene Expression at the DNA Level.

Beyer LI, Thoma J, Acha Alarcon L, ..., Inda-Díaz JS, Tietze AA

ACS Infect Dis 12 (1) 447-459 [2026-01-09; online 2025-12-09]

Glycoproteomics and MS Proteomics [Service]

Quantitative optical nanoscopy of mitochondrial-derived vesicles in neurons classifies pre-peroxisomal and clearing organelles.

Coceano G, Alvelid J, Damenti M, ..., Rorbach J, Testa I

Nat Commun 17 (1) 419 [2026-01-08; online 2026-01-08]

Integrated Microscopy Technologies Stockholm [Service]

Tirzepatide reduces alcohol drinking and relapse-like behaviours in rodents.

Edvardsson CE, Adermark L, Gottlieb S, ..., Becker HC, Jerlhag E

EBioMedicine 124 (-) 106119 [2026-01-07; online 2026-01-07]

Glycoproteomics and MS Proteomics [Collaborative]

Single-Cell Omics Analysis of Human Basophils Reveals Two Transcriptionally Distinct Populations.

Papavasileiou S, Mo J, Boey D, ..., Nilsson G, Dahlin JS

Allergy - (-) - [2026-01-07; online 2026-01-07]

NGI Long read [Collaborative] NGI Short read [Service] NGI Single cell [Collaborative] NGI Stockholm (Genomics Applications) [Collaborative] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Inflammatory protein profiles and shunt response in iNPH

Braun M, Ekblom M, Freyhult E, ..., Kultima K, Virhammar J

Fluids Barriers CNS 23 (1) 5 [2026-01-07; online 2026-01-07]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

TGFβ signaling mediates microglial resilience to spatiotemporally restricted myelin degeneration.

Zhu K, Liu Y, Min JH, ..., Harris RA, Lund H

Nat. Neurosci. - (-) - [2026-01-02; online 2026-01-02]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Genome Shows no Recent Inbreeding in Near-Extinction Woolly Rhinoceros Sample Found in Ancient Wolf's Stomach.

Guðjónsdóttir SM, Lord E, Pochon Z, ..., Dalén L, Chacón-Duque JC

Genome Biol Evol 18 (1) - [2026-01-02; online 2026-01-14]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Acute high-dose irradiation disrupts cell adhesion and Silk-Ovarioid formation in human primary ovarian cells

Deligiannis SP, Li T, Moussaud-Lamodière E, ..., Salumets A, Di Nisio V

J Ovarian Res 19 (1) - [2026-01-02; online 2026-01-02]

NGI Short read NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Using Historic and Contemporary Genomes to Assess the Genetic Consequences of a Population Decline in an Endangered Tern Population.

Schnelle A, Rollins RE, Müller IA, ..., Bouwhuis S, Liedvogel M

Evol Appl 19 (1) e70192 [2026-01-00; online 2026-01-02]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

Exploring the Substitution of the C21-OAc Moiety in [11]Cytochalasans: Synthesis and Evaluation of Fluorophore Conjugates.

Kagho MD, Schmidt K, Chakrabarti A, ..., Stradal TE, Klahn P

ChemBioChem 27 (1) e202500794 [2026-01-00; online 2025-11-27]

Glycoproteomics and MS Proteomics [Service]

Dynamic interaction of the Yersinia pseudotuberculosis type three secretion system proteins LcrV and LcrG.

Mangu JCK, Rogne P, Mattsson J, ..., Francis MS, Wolf-Watz M

Protein Sci. 35 (1) e70400 [2026-01-00; online 2025-12-22]

Structural Proteomics [Collaborative] Swedish NMR Centre [Service]

Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis

Vaivade A, Sreenivasan AP, Erngren I, ..., Burman J, Kultima K

Environment International 207 (-) 109993 [2026-01-00; online 2026-01-00]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]