Publications 2017

697 publications

The Interaction Modes of Haloimidazolium Salts in Solution
Schulz N, Sokkar P, Engelage E, ..., Sanchez-Garcia E, Huber SM
Chem. Eur. J. - (-) - [2017-12-28; online 2017-12-28]
Swedish NMR Centre (SNC) [Service]
Targeting tumor cells based on Phosphodiesterase 3A expression.
Nazir M, Senkowski W, Nyberg F, ..., Larsson R, Fryknäs M
Exp. Cell Res. 361 (2) 308-315 [2017-12-15; online 2017-10-26]
Drug Discovery and Development (DDD) [Service]
Gene expression and risk of leukemic transformation in myelodysplasia
Shiozawa Y, Malcovati L, Gallì A, ..., Cazzola M, Ogawa S
Blood 130 (24) 2642-2653 [2017-12-14; online 2017-11-02]
Clinical Genomics Uppsala [Service]
Genomic and phenotypic characteristics of Swedish C. jejuni water isolates.
Nilsson A, Johansson C, Skarp A, ..., Engstrand L, Rautelin H
PLoS ONE 12 (12) e0189222 [2017-12-07; online 2017-12-07]
Clinical Genomics Stockholm [Service]
The dynamic dimer structure of the chaperone Trigger Factor
Morgado L, Burmann BM, Sharpe T, Mazur A, Hiller S
Nat Commun 8 (1) - [2017-12-00; online 2017-12-08]
Swedish NMR Centre (SNC) [Service]
Increasing the permeability of Escherichia coli using MAC13243
Muheim C, Götzke H, Eriksson AU, ..., Nørholm MHH, Daley DO
Sci Rep 7 (1) - [2017-12-00; online 2017-12-15]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
Flow Cytometric Measurement of Blood Cells with BCR-ABL1 Fusion Protein in Chronic Myeloid Leukemia
Löf L, Arngården L, Olsson-Strömberg U, ..., Landegren U, Kamali-Moghaddam M
Sci Rep 7 (1) - [2017-12-00; online 2017-04-04]
Affinity Proteomics Uppsala [Technology development]
Lipid Driven Nanodomains in Giant Lipid Vesicles are Fluid and Disordered
Koukalová A, Amaro M, Aydogan G, ..., Hof M, Šachl R
Sci Rep 7 (1) - [2017-12-00; online 2017-07-14]
Swedish NMR Centre (SNC) [Service]
Microbial mineralization of cellulose in frozen soils
Segura JH, Nilsson MB, Haei M, ..., Schleucher J, Öquist MG
Nat Commun 8 (1) - [2017-12-00; online 2017-10-27]
Swedish NMR Centre (SNC) [Collaborative]
Orellanine specifically targets renal clear cell carcinoma.
Buvall L, Hedman H, Khramova A, ..., Haraldsson B, Nyström J
Oncotarget 8 (53) 91085-91098 [2017-10-31; online 2017-07-25]
Glycoproteomics [Collaborative]
Crystal structures of OrfX2 and P47 from a Botulinum neurotoxin OrfX type gene cluster.
Gustafsson R, Berntsson RP, Martínez-Carranza M, ..., Johnson EA, Stenmark P
FEBS Lett. - (-) - [2017-10-25; online 2017-10-25]
Protein Science Facility (PSF) [Service]
Glycoforest 1.0.
Horlacher O, Jin C, Alocci D, ..., Karlsson NG, Lisacek F
Anal. Chem. 89 (20) 10932-10940 [2017-10-17; online 2017-09-25]
Glycoproteomics [Technology development]
Targeted proteomic analysis of habitual coffee consumption.
Cornelis MC, Gustafsson S, Ärnlöv J, ..., Lind L, Ingelsson E
J. Intern. Med. - (-) - [2017-10-16; online 2017-10-16]
Clinical Biomarkers [Service]
RANK rewires energy homeostasis in lung cancer cells and drives primary lung cancer.
Rao S, Sigl V, Wimmer RA, ..., Dougall W, Penninger JM
Genes Dev. 31 (20) 2099-2112 [2017-10-15; online 2017-11-08]
Clinical Genomics Uppsala [Collaborative]
Chemical Proteomics for Target Discovery of Head-to-Tail Cyclized Mini-Proteins
Hellinger R, Thell K, Vasileva M, ..., Becker CW, Gruber CW
Front. Chem. 5 (-) - [2017-10-11; online 2017-10-11]
Swedish NMR Centre (SNC) [Service]
Subphenotypes of inflammatory bowel disease are characterized by specific serum protein profiles
Andersson E, Bergemalm D, Kruse R, ..., Repsilber D, Halfvarson J
PLoS ONE 12 (10) e0186142 [2017-10-05; online 2017-10-05]
Clinical Biomarkers [Service]
GlyTouCan: an accessible glycan structure repository.
Tiemeyer M, Aoki K, Paulson J, ..., Narimatsu H, Aoki-Kinoshita KF
Glycobiology 27 (10) 915-919 [2017-10-01; online 2017-09-20]
Glycoproteomics [Collaborative]
CRISPR/Cas9 screening using unique molecular identifiers
Schmierer B, Botla SK, Zhang J, ..., Kivioja T, Taipale J
Mol. Syst. Biol. 13 (10) 945 [2017-10-00; online 2017-10-09]
CRISPR Functional Genomics [Technology development]
Comprehensive analysis of NMR data using advanced line shape fitting
Niklasson M, Otten R, Ahlner A, ..., Petzold K, Lundström P
J Biomol NMR 69 (2) 93-99 [2017-10-00; online 2017-10-17]
Swedish NMR Centre (SNC) [Service]
Eosinophil Cationic Protein, Carotid Plaque, and Incidence of Stroke.
Sundström J, Söderholm M, Borné Y, ..., Orho-Melander M, Engström G
Stroke 48 (10) 2686-2692 [2017-10-00; online 2017-09-13]
Clinical Biomarkers [Service]
Tumor SHB gene expression affects disease characteristics in human acute myeloid leukemia.
Jamalpour M, Li X, Cavelier L, ..., Höglund M, Welsh M
Tumour Biol. 39 (10) 1010428317720643 [2017-10-00; online 2017-10-07]
Clinical Genomics Uppsala [Collaborative]
Breast cancer in young women and prognosis: How important are proliferation markers?
Fredholm H, Magnusson K, Lindström LS, ..., Frisell J, Fredriksson I
Eur. J. Cancer 84 (-) 278-289 [2017-10-00; online 2017-08-29]
Tissue Profiling [Collaborative]
Tumor Necrosis Factor Receptor 1 and 2 Are Associated With Risk of Intracerebral Hemorrhage.
Svensson EH, Söderholm M, Abul-Kasim K, Engström G
Stroke 48 (10) 2710-2715 [2017-10-00; online 2017-08-22]
Clinical Biomarkers [Service]
Plasma stem cell factor levels are associated with risk of cardiovascular disease and death
Björkbacka H, Yao Mattisson I, Wigren M, ..., Engström G, Nilsson J
J Intern Med - (-) - [2017-09-21; online 2017-09-21]
Clinical Biomarkers [Service]
Structures of the human mitochondrial ribosome in native states of assembly
Brown A, Rathore S, Kimanius D, ..., Amunts A, Ramakrishnan V
Nat Struct Mol Biol - (-) - [2017-09-11; online 2017-09-11]
Cryo-EM [Service]
The U2AF1S34F mutation induces lineage-specific splicing alterations in myelodysplastic syndromes
Yip BH, Steeples V, Repapi E, ..., Pellagatti A, Boultwood J
- 127 (9) 3557-3557 [2017-09-01; online 2017-09-01]
Clinical Genomics Uppsala [Service]
Metabolic profiles from two different breakfast meals characterized by 1 H NMR-based metabolomics
Rådjursöga M, Karlsson GB, Lindqvist HM, ..., Ellegård L, Winkvist A
Food Chem 231 (-) 267-274 [2017-09-00; online 2017-09-00]
Swedish NMR Centre (SNC) [Service]
Effect of food intake on 92 neurological biomarkers in plasma
Dencker M, Björgell O, Hlebowicz J
Brain Behav 7 (9) e00747 [2017-09-00; online 2017-08-01]
Clinical Biomarkers [Service]
Clonal Evolution of Autoreactive Germinal Centers.
Degn SE, van der Poel CE, Firl DJ, ..., Victora GD, Carroll MC
Cell 170 (5) 913-926.e19 [2017-08-24; online 2017-08-26]
Autoimmunity and Serology Profiling [Service]
Quantitative proteomic characterization of lung-MSC and bone marrow-MSC using DIA-mass spectrometry.
Rolandsson Enes S, Åhrman E, Palani A, ..., Malmström J, Westergren-Thorsson G
Sci Rep 7 (1) 9316 [2017-08-24; online 2017-08-24]
Structural Proteomics [Service]
SF3B1-initiating mutations in MDS-RSs target lymphomyeloid hematopoietic stem cells
Mortera-Blanco T, Dimitriou M, Woll PS, ..., Jacobsen SEW, Hellström-Lindberg E
Blood 130 (7) 881-890 [2017-08-17; online 2017-06-20]
Clinical Genomics Uppsala [Service]
Mucin-Inspired Lubrication on Hydrophobic Surfaces
Käsdorf BT, Weber F, Petrou G, ..., Crouzier T, Lieleg O
Biomacromolecules 18 (8) 2454-2462 [2017-08-14; online 2017-07-03]
Protein Science Facility (PSF) [Service]
Use of Proteomics To Investigate Kidney Function Decline over 5 Years.
Carlsson AC, Ingelsson E, Sundström J, ..., Lind L, Ärnlöv J
Clin J Am Soc Nephrol 12 (8) 1226-1235 [2017-08-07; online 2017-07-21]
Clinical Biomarkers [Service]
The structure of the tetanus toxin reveals pH‐mediated domain dynamics
Masuyer G, Conrad J, Stenmark P
EMBO Rep. 18 (8) 1306-1317 [2017-08-00; online 2017-06-23]
Cryo-EM [Service]
Objective automated quantification of fluorescence signal in histological sections of rat lens
Talebizadeh N, Hagström NZ, Yu Z, ..., Söderberg P, Wählby C
Cytometry 91 (8) 815-821 [2017-08-00; online 2017-05-11]
BioImage Informatics [Collaborative]
Structural pathway of regulated substrate transfer and threading through an Hsp100 disaggregase
Deville C, Carroni M, Franke KB, ..., Mogk A, Saibil HR
Sci Adv 3 (8) e1701726 [2017-08-00; online 2017-08-04]
Cryo-EM [Service]
Switchable ionic liquids enable efficient nanofibrillation of wood pulp
Berglund L, Anugwom I, Hedenström M, ..., Mikkola JP, Oksman K
Cellulose 24 (8) 3265-3279 [2017-08-00; online 2017-06-06]
Swedish NMR Centre (SNC) [Collaborative]
Isoflavones and Rotenoids from the Leaves of Millettia oblata ssp. teitensis
Deyou T, Marco M, Heydenreich M, ..., Yenesew A, Erdélyi M
J. Nat. Prod. 80 (7) 2060-2066 [2017-07-28; online 2017-06-30]
Swedish NMR Centre (SNC) [Service]
Continuous immunotypes describe human immune variation and predict diverse responses.
Kaczorowski KJ, Shekhar K, Nkulikiyimfura D, ..., Chakraborty AK, Brodin P
Proc. Natl. Acad. Sci. U.S.A. 114 (30) E6097-E6106 [2017-07-25; online 2017-07-10]
Cellular Immunomonitoring [Collaborative]
Paternal personality and social status influence offspring activity in zebrafish.
Zajitschek S, Herbert-Read JE, Abbasi NM, Zajitschek F, Immler S
BMC Evol. Biol. 17 (1) 157 [2017-07-03; online 2017-07-03]
Genome Engineering Zebrafish [Service]
Epitope mapping of a new anti-Tn antibody detecting gastric cancer cells.
Persson N, Stuhr-Hansen N, Risinger C, ..., Jansson B, Blixt O
Glycobiology 27 (7) 635-645 [2017-07-01; online 2017-04-19]
Structural Proteomics [Service]
Stability of Proteins in Dried Blood Spot Biobanks
Björkesten J, Enroth S, Shen Q, ..., Kamali-Moghaddam M, Landegren U
Mol Cell Proteomics 16 (7) 1286-1296 [2017-07-00; online 2017-05-13]
Affinity Proteomics Uppsala [Technology development]
Halogen Bonding: A Powerful Tool for Modulation of Peptide Conformation
Danelius E, Andersson H, Jarvoll P, ..., Gräfenstein J, Erdélyi M
Biochemistry 56 (25) 3265-3272 [2017-06-27; online 2017-06-12]
Swedish NMR Centre (SNC) [Service]
Structural basis for ligand binding to an enzyme by a conformational selection pathway
Kovermann M, Grundström C, Sauer-Eriksson AE, Sauer UH, Wolf-Watz M
Proc Natl Acad Sci USA 114 (24) 6298-6303 [2017-06-13; online 2017-05-30]
Swedish NMR Centre (SNC) [Service]
Effect of food intake on 92 biomarkers for cardiovascular disease
Dencker M, Gårdinger Y, Björgell O, Hlebowicz J
PLoS ONE 12 (6) e0178656 [2017-06-06; online 2017-06-06]
Clinical Biomarkers [Service]
Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.
Boulund F, Karlsson R, Gonzales-Siles L, ..., Moore ERB, Kristiansson E
Mol. Cell Proteomics 16 (6) 1052-1063 [2017-06-00; online 2017-04-18]
Glycoproteomics [Service]
Downregulation of RWA genes in hybrid aspen affects xylan acetylation and wood saccharification
Pawar PMA, Ratke C, Balasubramanian VK, ..., Jönsson LJ, Mellerowicz EJ
New Phytol 214 (4) 1491-1505 [2017-06-00; online 2017-03-03]
Swedish NMR Centre (SNC) [Collaborative]
Expression proteomics study to determine metallodrug targets and optimal drug combinations.
Lee RFS, Chernobrovkin A, Rutishauser D, ..., Zubarev RA, Dyson PJ
Sci Rep 7 (1) 1590 [2017-05-08; online 2017-05-08]
Chemical Proteomics [Collaborative]
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yin Y, Morgunova E, Jolma A, ..., Vinson C, Taipale J
Science 356 (6337) eaaj2239 [2017-05-05; online 2017-05-04]
Protein Science Facility (PSF) [Service]
Regulating plant physiology with organic electronics
Poxson DJ, Karady M, Gabrielsson R, ..., Simon DT, Berggren M
Proc Natl Acad Sci USA 114 (18) 4597-4602 [2017-05-02; online 2017-04-18]
Swedish Metabolomics Centre (SMC) [Service]
FADD, Caspase-3, and Caspase-8 and Incidence of Coronary Events.
Xue L, Borné Y, Mattisson IY, ..., Nilsson J, Engström G
Arterioscler. Thromb. Vasc. Biol. 37 (5) 983-989 [2017-05-00; online 2017-03-16]
Clinical Biomarkers [Service]
Brodie vs Hummers graphite oxides for preparation of multi-layered materials
Talyzin AV, Mercier G, Klechikov A, ..., Opitz A, Moons E
Carbon 115 (-) 430-440 [2017-05-00; online 2017-05-00]
Swedish NMR Centre (SNC) [Collaborative]
Genetic Profile of Ductal Adenocarcinoma of the Prostate.
Seipel AH, Whitington T, Delahunt B, ..., Lindberg J, Egevad L
Hum. Pathol. - (-) - [2017-04-27; online 2017-04-27]
Clinical Genomics Stockholm [Service]
Correlation of histopathologic characteristics to protein expression and function in malignant melanoma.
Welinder C, Pawłowski K, Szasz AM, ..., Wieslander E, Marko-Varga G
PLoS ONE 12 (4) e0176167 [2017-04-26; online 2017-04-26]
Structural Proteomics [Service]
Corrigendum: MTH1 inhibition eradicates cancer by preventing sanitation of the dNTP pool.
Gad H, Koolmeister T, Jemth AS, ..., Scobie M, Ulrika Warpman Berglund &Thomas Helleday
Nature 544 (7651) 508 [2017-04-26; online 2017-04-28]
Drug Discovery and Development (DDD) [Service]
dUTPase inhibition augments replication defects of 5-Fluorouracil.
Hagenkort A, Paulin CBJ, Desroses M, ..., Scobie M, Helleday T
Oncotarget 8 (14) 23713-23726 [2017-04-04; online 2017-04-21]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
Sulfonimidamides in Medicinal and Agricultural Chemistry
Chinthakindi PK, Naicker T, Thota N, ..., Kruger HG, Arvidsson PI
Angew. Chem. Int. Ed. 56 (15) 4100-4109 [2017-04-03; online 2017-02-23]
Drug Discovery and Development (DDD) [Technology development]
Lipid response patterns in acute phase paediatric Plasmodium falciparum malaria
Orikiiriza J, Surowiec I, Lindquist E, ..., Trygg J, Normark J
Metabolomics 13 (4) - [2017-04-00; online 2017-02-23]
Swedish Metabolomics Centre (SMC) [Service]
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures.
Davies H, Glodzik D, Morganella S, ..., Stratton MR, Nik-Zainal S
Nat. Med. 23 (4) 517-525 [2017-04-00; online 2017-03-13]
Clinical Genomics Lund [Collaborative]
Light-sensing via hydrogen peroxide and a peroxiredoxin
Bodvard K, Peeters K, Roger F, ..., Käll M, Molin M
Nat Commun 8 (1) - [2017-04-00; online 2017-03-24]
Integrated Microscopy Technologies Gothenburg [Service]
FZD10-Gα13 signalling axis points to a role of FZD10 in CNS angiogenesis.
Hot B, Valnohova J, Arthofer E, ..., Mulder J, Schulte G
Cell. Signal. 32 (-) 93-103 [2017-04-00; online 2017-01-24]
Fluorescence Tissue Profiling [Collaborative]
Discovery of circulating proteins associated to knee radiographic osteoarthritis.
Lourido L, Ayoglu B, Fernández-Tajes J, ..., Nilsson P, Blanco FJ
Sci Rep 7 (1) 137 [2017-03-09; online 2017-03-09]
Affinity Proteomics Stockholm [Collaborative]
Discovery of new biomarkers for atrial fibrillation using a custom-made proteomics chip.
Lind L, Sundström J, Stenemo M, Hagström E, Ärnlöv J
Heart 103 (5) 377-382 [2017-03-00; online 2016-09-10]
Clinical Biomarkers [Service]
Genomic Variation in IbA10G2 and Other Patient-Derived Cryptosporidium hominis Subtypes
Sikora P, Andersson S, Winiecka-Krusnell J, ..., Beser J, Arrighi RBG
J. Clin. Microbiol. 55 (3) 844-858 [2017-03-00; online 2016-12-21]
Clinical Genomics Gothenburg [Collaborative]
Signs of ongoing inflammation in female patients with chronic widespread pain
Gerdle B, Ghafouri B, Ghafouri N, Bäckryd E, Gordh T
Medicine 96 (9) e6130 [2017-03-00; online 2017-03-00]
Clinical Biomarkers [Service]
Stool frequency is associated with gut microbiota composition.
Hadizadeh F, Walter S, Belheouane M, ..., Franke A, D'Amato M
Gut 66 (3) 559-560 [2017-03-00; online 2016-05-20]
Clinical Genomics Stockholm [Collaborative]
Flavonoids fromErythrina schliebenii
Nyandoro SS, Munissi JJE, Kombo M, ..., Rissanen K, Erdélyi M
J. Nat. Prod. 80 (2) 377-383 [2017-02-24; online 2017-01-23]
Swedish NMR Centre (SNC) [Service]
Three Chalconoids and a Pterocarpene from the Roots of Tephrosia aequilata
Atilaw Y, Duffy S, Heydenreich M, ..., Erdélyi M, Yenesew A
Molecules 22 (2) 318 [2017-02-20; online 2017-02-20]
Swedish NMR Centre (SNC) [Service]
Associations of defect mismatch repair genes with prognosis and heredity in sporadic colorectal cancer.
Ghanipour L, Jirström K, Sundström M, Glimelius B, Birgisson H
Eur J Surg Oncol 43 (2) 311-321 [2017-02-00; online 2016-11-12]
Tissue Profiling [Service]
Complement peptide C3a stimulates neural plasticity after experimental brain ischaemia
Stokowska A, Atkins AL, Morán J, ..., Dragunow M, Pekna M
Brain 140 (2) 353-369 [2017-02-00; online 2016-12-12]
Integrated Microscopy Technologies Gothenburg [Service]
Endocytic turnover of Rab8 controls cell polarization
Vidal-Quadras M, Holst MR, Francis MK, ..., Martín-Belmonte F, Lundmark R
J Cell Sci - (-) jcs.195420 [2017-01-30; online 2017-01-30]
Integrated Microscopy Technologies Gothenburg [Service]
Polyoxygenated Cyclohexenes and Other Constituents of Cleistochlamys kirkii Leaves
Nyandoro SS, Munissi JJE, Gruhonjic A, ..., Rissanen K, Erdélyi M
J. Nat. Prod. 80 (1) 114-125 [2017-01-27; online 2016-12-21]
Swedish NMR Centre (SNC) [Service]
Perivascular PDGFR-β is an independent marker for prognosis in renal cell carcinoma.
Frödin M, Mezheyeuski A, Corvigno S, ..., Johansson M, Östman A
Br. J. Cancer 116 (2) 195-201 [2017-01-17; online 2016-12-09]
Tissue Profiling [Service]
Proteomic analysis of enterotoxigenic Escherichia coli (ETEC) in neutral and alkaline conditions.
Gonzales-Siles L, Karlsson R, Kenny D, Karlsson A, Sjöling Å
BMC Microbiol. 17 (1) 11 [2017-01-07; online 2017-01-07]
Glycoproteomics [Service]
Small Molecule Microarray Based Discovery of PARP14 Inhibitors
Peng B, Thorsell AG, Karlberg T, Schüler H, Yao SQ
Angew. Chem. Int. Ed. 56 (1) 248-253 [2017-01-02; online 2016-12-05]
Protein Science Facility (PSF) [Service]
SHADE AVOIDANCE 4 Is Required for Proper Auxin Distribution in the Hypocotyl
Ge Y, Yan F, Zourelidou M, ..., Schwechheimer C, Tao Y
Plant Physiol. 173 (1) 788-800 [2017-01-00; online 2016-11-21]
Swedish Metabolomics Centre (SMC) [Service]
Identification of two distinct mesenchymal stromal cell populations in human malignant glioma.
Svensson A, Ramos-Moreno T, Eberstål S, Scheding S, Bengzon J
J. Neurooncol. 131 (2) 245-254 [2017-01-00; online 2016-10-18]
Clinical Genomics Lund [Service]
Novel spirocyclic systems via multicomponent aza-Diels–Alder reaction
Llona-Minguez S, Throup A, Steiner E, ..., Jenmalm-Jensen A, Helleday T
Org. Biomol. Chem. 15 (37) 7758-7764 [2017-00-00; online 2017-00-00]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
Decoding Gene Expression in 2D and 3D
Bombrun M, Ranefall P, Lindblad J, ..., Nilsson M, Wählby C
Scandinavian Conference on Image Analysis 2017 - (-) 257-268 [2017-00-00; online 2017-05-19]
BioImage Informatics [Collaborative]
Achieving enhanced ionic mobility in nanoporous silica by controlled surface interactions
Garaga MN, Aguilera L, Yaghini N, ..., Persson M, Martinelli A
Phys. Chem. Chem. Phys. 19 (8) 5727-5736 [2017-00-00; online 2017-00-00]
Swedish NMR Centre (SNC) [Service]
Favored surface-limited oxidation of cellulose with Oxone® in water
Ruan CQ, Strømme M, Mihranyan A, Lindh J
RSC Adv. 7 (64) 40600-40607 [2017-00-00; online 2017-00-00]
Swedish NMR Centre (SNC) [Service]