Publications 2014

376 publications

Peritoneal carcinomatosis from small intestinal neuroendocrine tumors: Clinical course and genetic profiling.
Norlén O, Edfeldt K, Akerstrom G, ..., Bjorklund P, Stalberg P
pii: S0039-6060(14)00568-6
Surgery 156 (6) 1512-21; discussion 1521-2 [2014-12-00; online 2014-11-11]
NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
Efficient application of next-generation sequencing for the diagnosis of rare genetic syndromes.
Madrigal I, Alvarez-Mora MI, Karlberg O, ..., Syvänen AC, Milà M
pii: jclinpath-2014-202537
J. Clin. Pathol. 67 (12) 1099-1103 [2014-12-00; online 2014-10-02]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Insights into conifer giga-genomes.
De La Torre AR, Birol I, Bousquet J, ..., Zerbe P, Bohlmann J
pii: pp.114.248708 pmc: PMC4256843
Plant Physiol. 166 (4) 1724-1732 [2014-12-00; online 2014-10-29]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
Serotonin receptor gene (5HT-2A) polymorphism is associated with provoked vestibulodynia and comorbid symptoms of pain.
Heddini U, Bohm-Starke N, Grönbladh A, ..., Nilsson KW, Johannesson U
pii: S1743-6095(15)30634-2
J Sex Med 11 (12) 3064-3071 [2014-12-00; online 2014-09-02]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
1p36 deletion is a marker for tumour dissemination in microsatellite stable stage II-III colon cancer.
Mayrhofer M, Kultima HG, Birgisson H, ..., Glimelius B, Isaksson A
pii: 1471-2407-14-872 pmc: PMC4251789
BMC Cancer 14 (-) 872 [2014-11-24; online 2014-11-24]
Array and Analysis Facility
Aberrantly activated claudin 6 and 18.2 as potential therapy targets in non-small-cell lung cancer.
Micke P, Mattsson JS, Edlund K, ..., Sahin U, Türeci O
Int. J. Cancer 135 (9) 2206-2214 [2014-11-01; online 2014-04-09]
Tissue Profiling
Binning metagenomic contigs by coverage and composition.
Alneberg J, Bjarnason BS, de Bruijn I, ..., Andersson AF, Quince C
pii: nmeth.3103
Nat. Methods 11 (11) 1144-1146 [2014-11-00; online 2014-09-15]
Bioinformatics Support and Infrastructure Bioinformatics Support, Infrastructure and Training
Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array.
Kawakami T, Backström N, Burri R, ..., Qvarnström A, Ellegren H
pmc: PMC4368375 dbSNP: SS_974710772 dbSNP: SS_974710773 dbSNP: SS_974710774 dbSNP: SS_974710775 dbSNP: SS_974710776 dbSNP: SS_974710777 dbSNP: SS_974710778 dbSNP: SS_974710779 dbSNP: SS_974710780 dbSNP: SS_974710781 dbSNP: SS_974710782 dbSNP: SS_974710783 dbSNP: SS_974710784 dbSNP: SS_974710785 dbSNP: SS_974710786 dbSNP: SS_974710787 dbSNP: SS_974710788 dbSNP: SS_974710789 dbSNP: SS_974710790 dbSNP: SS_974710791 dbSNP: SS_974710792 dbSNP: SS_974710793 dbSNP: SS_974710794 dbSNP: SS_974710795 dbSNP: SS_974710796 dbSNP: SS_974710797 dbSNP: SS_974710798 dbSNP: SS_974710799 dbSNP: SS_974710800 dbSNP: SS_974710801 dbSNP: SS_974710802 dbSNP: SS_974710803 dbSNP: SS_974710804 dbSNP: SS_974710805 dbSNP: SS_974710806 dbSNP: SS_974710807 dbSNP: SS_974710808 dbSNP: SS_974710809 dbSNP: SS_974710810 dbSNP: SS_974710811 dbSNP: SS_974710812 dbSNP: SS_974710813 dbSNP: SS_974710814 dbSNP: SS_974710815 dbSNP: SS_974710816 dbSNP: SS_974710817 dbSNP: SS_974710818 dbSNP: SS_974710819 dbSNP: SS_974710820 dbSNP: SS_974710821 dbSNP: SS_974710822 dbSNP: SS_974710823 dbSNP: SS_974710824 dbSNP: SS_974710825 dbSNP: SS_974710826 dbSNP: SS_974710827 dbSNP: SS_974710828 dbSNP: SS_974710829 dbSNP: SS_974710830 dbSNP: SS_974710831 dbSNP: SS_974710832 dbSNP: SS_974710833 dbSNP: SS_974710834 dbSNP: SS_974710835 dbSNP: SS_974710836 dbSNP: SS_974710837 dbSNP: SS_974710838 dbSNP: SS_974710839 dbSNP: SS_974710840 dbSNP: SS_974710841 dbSNP: SS_974710842 dbSNP: SS_974710843 dbSNP: SS_974710844 dbSNP: SS_974710845 dbSNP: SS_974710846 dbSNP: SS_974710847 dbSNP: SS_974710848 dbSNP: SS_974710849 dbSNP: SS_974710850 dbSNP: SS_974710851 dbSNP: SS_974710852 dbSNP: SS_974710853 dbSNP: SS_974710854 dbSNP: SS_974710855 dbSNP: SS_974710856 dbSNP: SS_974710857 dbSNP: SS_974710858 dbSNP: SS_974710859 dbSNP: SS_974710860 dbSNP: SS_974710861 dbSNP: SS_974710862 dbSNP: SS_974710863 dbSNP: SS_974710864 dbSNP: SS_974710865 dbSNP: SS_974710866 dbSNP: SS_974710867 dbSNP: SS_974710868 dbSNP: SS_974710869 dbSNP: SS_974710870 dbSNP: SS_974710871 dbSNP: SS_974710872 dbSNP: SS_974710873 dbSNP: SS_974710874 dbSNP: SS_974710875 dbSNP: SS_974710876 dbSNP: SS_974710877 dbSNP: SS_974710878 dbSNP: SS_974710879 dbSNP: SS_974710880 dbSNP: SS_974710881 dbSNP: SS_974710882 dbSNP: SS_974710883 dbSNP: SS_974710884 dbSNP: SS_974710885 dbSNP: SS_974710886 dbSNP: SS_974710887 dbSNP: SS_974710888 dbSNP: SS_974710889 dbSNP: SS_974710890 dbSNP: SS_974710891 dbSNP: SS_974710892 dbSNP: SS_974710893 dbSNP: SS_974710894 dbSNP: SS_974710895 dbSNP: SS_974710896 dbSNP: SS_974710897 dbSNP: SS_974710898 dbSNP: SS_974710899 dbSNP: SS_974710900 dbSNP: SS_974710901 dbSNP: SS_974710902 dbSNP: SS_974710903 dbSNP: SS_974710904 dbSNP: SS_974710905 dbSNP: SS_974710906 dbSNP: SS_974710907 dbSNP: SS_974710908 dbSNP: SS_974710909 dbSNP: SS_974710910 dbSNP: SS_974710911 dbSNP: SS_974710912 dbSNP: SS_974710913 dbSNP: SS_974710914 dbSNP: SS_974710915 dbSNP: SS_974710916 dbSNP: SS_974710917 dbSNP: SS_974710918 dbSNP: SS_974710919 dbSNP: SS_974710920 dbSNP: SS_974710921 dbSNP: SS_974710922 dbSNP: SS_974710923 dbSNP: SS_974710924 dbSNP: SS_974710925 dbSNP: SS_974710926 dbSNP: SS_974710927 dbSNP: SS_974710928 dbSNP: SS_974710929 dbSNP: SS_974710930 dbSNP: SS_974710931 dbSNP: SS_974710932 dbSNP: SS_974710933 dbSNP: SS_974710934 dbSNP: SS_974710935 dbSNP: SS_974710936 dbSNP: SS_974710937 dbSNP: SS_974710938 dbSNP: SS_974710939 dbSNP: SS_974710940 dbSNP: SS_974710941 dbSNP: SS_974710942 dbSNP: SS_974710943 dbSNP: SS_974710944 dbSNP: SS_974710945 dbSNP: SS_974710946 dbSNP: SS_974710947 dbSNP: SS_974710948 dbSNP: SS_974710949 dbSNP: SS_974710950 dbSNP: SS_974710951 dbSNP: SS_974710952 dbSNP: SS_974710953 dbSNP: SS_974710954 dbSNP: SS_974710955 dbSNP: SS_974710956 dbSNP: SS_974710957 dbSNP: SS_974710958 dbSNP: SS_974710959 dbSNP: SS_974710960 dbSNP: SS_974710961 dbSNP: SS_974710962 dbSNP: SS_974710963 dbSNP: SS_974710964 dbSNP: SS_974710965 dbSNP: SS_974710966 dbSNP: SS_974710967 dbSNP: SS_974710968 dbSNP: SS_974710969 dbSNP: SS_974710970 dbSNP: SS_974710971 dbSNP: SS_974710972 dbSNP: SS_974710973 dbSNP: SS_974710974 dbSNP: SS_974710975 dbSNP: SS_974710976 dbSNP: SS_974710977 dbSNP: SS_974710978 dbSNP: SS_974710979 dbSNP: SS_974710980 dbSNP: SS_974710981 dbSNP: SS_974710982 dbSNP: SS_974710983 dbSNP: SS_974710984 dbSNP: SS_974710985 dbSNP: SS_974710986 dbSNP: SS_974710987 dbSNP: SS_974710988 dbSNP: SS_974710989 dbSNP: SS_974710990 dbSNP: SS_974710991 dbSNP: SS_974710992 dbSNP: SS_974710993 dbSNP: SS_974710994 dbSNP: SS_974710995 dbSNP: SS_974710996 dbSNP: SS_974710997 dbSNP: SS_974710998 dbSNP: SS_974710999 dbSNP: SS_974711000 dbSNP: SS_974711001 dbSNP: SS_974711002 dbSNP: SS_974711003 dbSNP: SS_974711004 dbSNP: SS_974711005 dbSNP: SS_974711006 dbSNP: SS_974711007 dbSNP: SS_974711008 dbSNP: SS_974711009 dbSNP: SS_974711010 dbSNP: SS_974711011 dbSNP: SS_974711012 dbSNP: SS_974711013 dbSNP: SS_974711014 dbSNP: SS_974711015 dbSNP: SS_974711016 dbSNP: SS_974711017 dbSNP: SS_974711018 dbSNP: SS_974711019 dbSNP: SS_974711020 dbSNP: SS_974711021 dbSNP: SS_974711022 dbSNP: SS_974711023 dbSNP: SS_974711024 dbSNP: SS_974711025 dbSNP: SS_974711026 dbSNP: SS_974711027 dbSNP: SS_974711028 dbSNP: SS_974711029 dbSNP: SS_974711030 dbSNP: SS_974711031 dbSNP: SS_974711032 dbSNP: SS_974711033 dbSNP: SS_974711034 dbSNP: SS_974711035 dbSNP: SS_974711036 dbSNP: SS_974711037 dbSNP: SS_974711038 dbSNP: SS_974711039 dbSNP: SS_974711040 dbSNP: SS_974711041 dbSNP: SS_974711042 dbSNP: SS_974711043 dbSNP: SS_974711044 dbSNP: SS_974711045 dbSNP: SS_974711046 dbSNP: SS_974711047 dbSNP: SS_974711048 dbSNP: SS_974711049 dbSNP: SS_974711050 dbSNP: SS_974711051 dbSNP: SS_974711052 dbSNP: SS_974711053 dbSNP: SS_974711054 dbSNP: SS_974711055 dbSNP: SS_974711056 dbSNP: SS_974711057 dbSNP: SS_974711058 dbSNP: SS_974711059 dbSNP: SS_974711060 dbSNP: SS_974711061 dbSNP: SS_974711062 dbSNP: SS_974711063 dbSNP: SS_974711064 dbSNP: SS_974711065 dbSNP: SS_974711066 dbSNP: SS_974711067 dbSNP: SS_974711068 dbSNP: SS_974711069 dbSNP: SS_974711070 dbSNP: SS_974711071 dbSNP: SS_974711072 dbSNP: SS_974711073 dbSNP: SS_974711074 dbSNP: SS_974711075 dbSNP: SS_974711076 dbSNP: SS_974711077 dbSNP: SS_974711078 dbSNP: SS_974711079 dbSNP: SS_974711080 dbSNP: SS_974711081 dbSNP: SS_974711082 dbSNP: SS_974711083 dbSNP: SS_974711084 dbSNP: SS_974711085 dbSNP: SS_974711086 dbSNP: SS_974711087 dbSNP: SS_974711088 dbSNP: SS_974711089 dbSNP: SS_974711090 dbSNP: SS_974711091 dbSNP: SS_974711092 dbSNP: SS_974711093 dbSNP: SS_974711094 dbSNP: SS_974711095 dbSNP: SS_974711096 dbSNP: SS_974711097 dbSNP: SS_974711098 dbSNP: SS_974711099 dbSNP: SS_974711100 dbSNP: SS_974711101 dbSNP: SS_974711102 dbSNP: SS_974711103 dbSNP: SS_974711104 dbSNP: SS_974711105 dbSNP: SS_974711106 dbSNP: SS_974711107 dbSNP: SS_974711108 dbSNP: SS_974711109 dbSNP: SS_974711110 dbSNP: SS_974711111 dbSNP: SS_974711112 dbSNP: SS_974711113 dbSNP: SS_974711114 dbSNP: SS_974711115 dbSNP: SS_974711116 dbSNP: SS_974711117 dbSNP: SS_974711118 dbSNP: SS_974711119 dbSNP: SS_974711120 dbSNP: SS_974711121 dbSNP: SS_974711122 dbSNP: SS_974711123 dbSNP: SS_974711124 dbSNP: SS_974711125 dbSNP: SS_974711126 dbSNP: SS_974711127 dbSNP: SS_974711128 dbSNP: SS_974711129 dbSNP: SS_974711130 dbSNP: SS_974711131 dbSNP: SS_974711132 dbSNP: SS_974711133 dbSNP: SS_974711134 dbSNP: SS_974711135 dbSNP: SS_974711136 dbSNP: SS_974711137 dbSNP: SS_974711138 dbSNP: SS_974711139 dbSNP: SS_974711140 dbSNP: SS_974711141 dbSNP: SS_974711142 dbSNP: SS_974711143 dbSNP: SS_974711144 dbSNP: SS_974711145 dbSNP: SS_974711146 dbSNP: SS_974711147 dbSNP: SS_974711148 dbSNP: SS_974711149 dbSNP: SS_974711150 dbSNP: SS_974711151 dbSNP: SS_974711152 dbSNP: SS_974711153 dbSNP: SS_974711154 dbSNP: SS_974711155 dbSNP: SS_974711156 dbSNP: SS_974711157 dbSNP: SS_974711158 dbSNP: SS_974711159 dbSNP: SS_974711160 dbSNP: SS_974711161 dbSNP: SS_974711162 dbSNP: SS_974711163 dbSNP: SS_974711164 dbSNP: SS_974711165 dbSNP: SS_974711166 dbSNP: SS_974711167 dbSNP: SS_974711168 dbSNP: SS_974711169 dbSNP: SS_974711170 dbSNP: SS_974711171 dbSNP: SS_974711172 dbSNP: SS_974711173 dbSNP: SS_974711174 dbSNP: SS_974711175 dbSNP: SS_974711176 dbSNP: SS_974711177 dbSNP: SS_974711178 dbSNP: SS_974711179 dbSNP: SS_974711180 dbSNP: SS_974711181 dbSNP: SS_974711182 dbSNP: SS_974711183 dbSNP: SS_974711184 dbSNP: SS_974711185 dbSNP: SS_974711186 dbSNP: SS_974711187 dbSNP: SS_974711188 dbSNP: SS_974711189 dbSNP: SS_974711190 dbSNP: SS_974711191 dbSNP: SS_974711192 dbSNP: SS_974711193 dbSNP: SS_974711194 dbSNP: SS_974711195 dbSNP: SS_974711196 dbSNP: SS_974711197 dbSNP: SS_974711198 dbSNP: SS_974711199 dbSNP: SS_974711200 dbSNP: SS_974711201 dbSNP: SS_974711202 dbSNP: SS_974711203 dbSNP: SS_974711204 dbSNP: SS_974711205 dbSNP: SS_974711206 dbSNP: SS_974711207 dbSNP: SS_974711208 dbSNP: SS_974711209 dbSNP: SS_974711210 dbSNP: SS_974711211 dbSNP: SS_974711212 dbSNP: SS_974711213 dbSNP: SS_974711214 dbSNP: SS_974711215 dbSNP: SS_974711216 dbSNP: SS_974711217 dbSNP: SS_974711218 dbSNP: SS_974711219 dbSNP: SS_974711220 dbSNP: SS_974711221 dbSNP: SS_974711222 dbSNP: SS_974711223 dbSNP: SS_974711224 dbSNP: SS_974711225 dbSNP: SS_974711226 dbSNP: SS_974711227 dbSNP: SS_974711228 dbSNP: SS_974711229 dbSNP: SS_974711230 dbSNP: SS_974711231 dbSNP: SS_974711232 dbSNP: SS_974711233 dbSNP: SS_974711234 dbSNP: SS_974711235 dbSNP: SS_974711236 dbSNP: SS_974711237 dbSNP: SS_974711238 dbSNP: SS_974711239 dbSNP: SS_974711240 dbSNP: SS_974711241 dbSNP: SS_974711242 dbSNP: SS_974711243 dbSNP: SS_974711244 dbSNP: SS_974711245 dbSNP: SS_974711246 dbSNP: SS_974711247 dbSNP: SS_974711248 dbSNP: SS_974711249 dbSNP: SS_974711250 dbSNP: SS_974711251 dbSNP: SS_974711252 dbSNP: SS_974711253 dbSNP: SS_974711254 dbSNP: SS_974711255 dbSNP: SS_974711256 dbSNP: SS_974711257 dbSNP: SS_974711258 dbSNP: SS_974711259 dbSNP: SS_974711260 dbSNP: SS_974711261 dbSNP: SS_974711262 dbSNP: SS_974711263 dbSNP: SS_974711264 dbSNP: SS_974711265 dbSNP: SS_974711266 dbSNP: SS_974711267 dbSNP: SS_974711268 dbSNP: SS_974711269 dbSNP: SS_974711270 dbSNP: SS_974711271 dbSNP: SS_974711272 dbSNP: SS_974711273 dbSNP: SS_974711274 dbSNP: SS_974711275 dbSNP: SS_974711276 dbSNP: SS_974711277 dbSNP: SS_974711278 dbSNP: SS_974711279 dbSNP: SS_974711280 dbSNP: SS_974711281 dbSNP: SS_974711282 dbSNP: SS_974711283 dbSNP: SS_974711284 dbSNP: SS_974711285 dbSNP: SS_974711286 dbSNP: SS_974711287 dbSNP: SS_974711288 dbSNP: SS_974711289 dbSNP: SS_974711290 dbSNP: SS_974711291 dbSNP: SS_974711292 dbSNP: SS_974711293 dbSNP: SS_974711294 dbSNP: SS_974711295 dbSNP: SS_974711296 dbSNP: SS_974711297 dbSNP: SS_974711298 dbSNP: SS_974711299 dbSNP: SS_974711300 dbSNP: SS_974711301 dbSNP: SS_974711302 dbSNP: SS_974711303 dbSNP: SS_974711304 dbSNP: SS_974711305 dbSNP: SS_974711306 dbSNP: SS_974711307 dbSNP: SS_974711308 dbSNP: SS_974711309 dbSNP: SS_974711310 dbSNP: SS_974711311 dbSNP: SS_974711312 dbSNP: SS_974711313 dbSNP: SS_974711314 dbSNP: SS_974711315 dbSNP: SS_974711316 dbSNP: SS_974711317 dbSNP: SS_974711318 dbSNP: SS_974711319 dbSNP: SS_974711320 dbSNP: SS_974711321 dbSNP: SS_974711322 dbSNP: SS_974711323 dbSNP: SS_974711324 dbSNP: SS_974711325 dbSNP: SS_974711326 dbSNP: SS_974711327 dbSNP: SS_974711328 dbSNP: SS_974711329 dbSNP: SS_974711330 dbSNP: SS_974711331 dbSNP: SS_974711332 dbSNP: SS_974711333 dbSNP: SS_974711334 dbSNP: SS_974711335 dbSNP: SS_974711336 dbSNP: SS_974711337 dbSNP: SS_974711338 dbSNP: SS_974711339 dbSNP: SS_974711340 dbSNP: SS_974711341 dbSNP: SS_974711342 dbSNP: SS_974711343 dbSNP: SS_974711344 dbSNP: SS_974711345 dbSNP: SS_974711346 dbSNP: SS_974711347 dbSNP: SS_974711348 dbSNP: SS_974711349 dbSNP: SS_974711350 dbSNP: SS_974711351 dbSNP: SS_974711352 dbSNP: SS_974711353 dbSNP: SS_974711354 dbSNP: SS_974711355 dbSNP: SS_974711356 dbSNP: SS_974711357 dbSNP: SS_974711358 dbSNP: SS_974711359 dbSNP: SS_974711360 dbSNP: SS_974711361 dbSNP: SS_974711362 dbSNP: SS_974711363 dbSNP: SS_974711364 dbSNP: SS_974711365 dbSNP: SS_974711366 dbSNP: SS_974711367 dbSNP: SS_974711368 dbSNP: SS_974711369 dbSNP: SS_974711370 dbSNP: SS_974711371 dbSNP: SS_974711372 dbSNP: SS_974711373 dbSNP: SS_974711374 dbSNP: SS_974711375 dbSNP: SS_974711376 dbSNP: SS_974711377 dbSNP: SS_974711378 dbSNP: SS_974711379 dbSNP: SS_974711380 dbSNP: SS_974711381 dbSNP: SS_974711382 dbSNP: SS_974711383 dbSNP: SS_974711384 dbSNP: SS_974711385 dbSNP: SS_974711386 dbSNP: SS_974711387 dbSNP: SS_974711388 dbSNP: SS_974711389 dbSNP: SS_974711390 dbSNP: SS_974711391 dbSNP: SS_974711392 dbSNP: SS_974711393 dbSNP: SS_974711394 dbSNP: SS_974711395 dbSNP: SS_974711396 dbSNP: SS_974711397 dbSNP: SS_974711398 dbSNP: SS_974711399 dbSNP: SS_974711400 dbSNP: SS_974711401 dbSNP: SS_974711402 dbSNP: SS_974711403 dbSNP: SS_974711404 dbSNP: SS_974711405 dbSNP: SS_974711406 dbSNP: SS_974711407 dbSNP: SS_974711408 dbSNP: SS_974711409 dbSNP: SS_974711410 dbSNP: SS_974711411 dbSNP: SS_974711412 dbSNP: SS_974711413 dbSNP: SS_974711414 dbSNP: SS_974711415 dbSNP: SS_974711416 dbSNP: SS_974711417 dbSNP: SS_974711418 dbSNP: SS_974711419 dbSNP: SS_974711420 dbSNP: SS_974711421 dbSNP: SS_974711422 dbSNP: SS_974711423 dbSNP: SS_974711424 dbSNP: SS_974711425 dbSNP: SS_974711426 dbSNP: SS_974711427 dbSNP: SS_974711428 dbSNP: SS_974711429 dbSNP: SS_974711430 dbSNP: SS_974711431 dbSNP: SS_974711432 dbSNP: SS_974711433 dbSNP: SS_974711434 dbSNP: SS_974711435 dbSNP: SS_974711436 dbSNP: SS_974711437 dbSNP: SS_974711438 dbSNP: SS_974711439 dbSNP: SS_974711440 dbSNP: SS_974711441 dbSNP: SS_974711442 dbSNP: SS_974711443 dbSNP: SS_974711444 dbSNP: SS_974711445 dbSNP: SS_974711446 dbSNP: SS_974711447 dbSNP: SS_974711448 dbSNP: SS_974711449 dbSNP: SS_974711450 dbSNP: SS_974711451 dbSNP: SS_974711452 dbSNP: SS_974711453 dbSNP: SS_974711454 dbSNP: SS_974711455 dbSNP: SS_974711456 dbSNP: SS_974711457 dbSNP: SS_974711458 dbSNP: SS_974711459 dbSNP: SS_974711460 dbSNP: SS_974711461 dbSNP: SS_974711462 dbSNP: SS_974711463 dbSNP: SS_974711464 dbSNP: SS_974711465 dbSNP: SS_974711466 dbSNP: SS_974711467 dbSNP: SS_974711468 dbSNP: SS_974711469 dbSNP: SS_974711470 dbSNP: SS_974711471 dbSNP: SS_974711472 dbSNP: SS_974711473 dbSNP: SS_974711474 dbSNP: SS_974711475 dbSNP: SS_974711476 dbSNP: SS_974711477 dbSNP: SS_974711478 dbSNP: SS_974711479 dbSNP: SS_974711480 dbSNP: SS_974711481 dbSNP: SS_974711482 dbSNP: SS_974711483 dbSNP: SS_974711484 dbSNP: SS_974711485 dbSNP: SS_974711486 dbSNP: SS_974711487 dbSNP: SS_974711488 dbSNP: SS_974711489 dbSNP: SS_974711490 dbSNP: SS_974711491 dbSNP: SS_974711492 dbSNP: SS_974711493 dbSNP: SS_974711494 dbSNP: SS_974711495 dbSNP: SS_974711496 dbSNP: SS_974711497 dbSNP: SS_974711498 dbSNP: SS_974711499 dbSNP: SS_974711500 dbSNP: SS_974711501 dbSNP: SS_974711502 dbSNP: SS_974711503 dbSNP: SS_974711504 dbSNP: SS_974711505 dbSNP: SS_974711506 dbSNP: SS_974711507 dbSNP: SS_974711508 dbSNP: SS_974711509 dbSNP: SS_974711510 dbSNP: SS_974711511 dbSNP: SS_974711512 dbSNP: SS_974711513 dbSNP: SS_974711514 dbSNP: SS_974711515 dbSNP: SS_974711516 dbSNP: SS_974711517 dbSNP: SS_974711518 dbSNP: SS_974711519 dbSNP: SS_974711520 dbSNP: SS_974711521 dbSNP: SS_974711522 dbSNP: SS_974711523 dbSNP: SS_974711524 dbSNP: SS_974711525 dbSNP: SS_974711526 dbSNP: SS_974711527 dbSNP: SS_974711528 dbSNP: SS_974711529 dbSNP: SS_974711530 dbSNP: SS_974711531 dbSNP: SS_974711532 dbSNP: SS_974711533 dbSNP: SS_974711534 dbSNP: SS_974711535 dbSNP: SS_974711536 dbSNP: SS_974711537 dbSNP: SS_974711538 dbSNP: SS_974711539 dbSNP: SS_974711540 dbSNP: SS_974711541 dbSNP: SS_974711542 dbSNP: SS_974711543 dbSNP: SS_974711544 dbSNP: SS_974711545 dbSNP: SS_974711546 dbSNP: SS_974711547 dbSNP: SS_974711548 dbSNP: SS_974711549 dbSNP: SS_974711550 dbSNP: SS_974711551 dbSNP: SS_974711552 dbSNP: SS_974711553 dbSNP: SS_974711554 dbSNP: SS_974711555 dbSNP: SS_974711556 dbSNP: SS_974711557 dbSNP: SS_974711558 dbSNP: SS_974711559 dbSNP: SS_974711560 dbSNP: SS_974711561 dbSNP: SS_974711562 dbSNP: SS_974711563 dbSNP: SS_974711564 dbSNP: SS_974711565 dbSNP: SS_974711566 dbSNP: SS_974711567 dbSNP: SS_974711568 dbSNP: SS_974711569 dbSNP: SS_974711570 dbSNP: SS_974711571 dbSNP: SS_974711572 dbSNP: SS_974711573 dbSNP: SS_974711574 dbSNP: SS_974711575 dbSNP: SS_974711576 dbSNP: SS_974711577 dbSNP: SS_974711578 dbSNP: SS_974711579 dbSNP: SS_974711580 dbSNP: SS_974711581 dbSNP: SS_974711582 dbSNP: SS_974711583 dbSNP: SS_974711584 dbSNP: SS_974711585 dbSNP: SS_974711586 dbSNP: SS_974711587 dbSNP: SS_974711588 dbSNP: SS_974711589 dbSNP: SS_974711590 dbSNP: SS_974711591 dbSNP: SS_974711592 dbSNP: SS_974711593 dbSNP: SS_974711594 dbSNP: SS_974711595 dbSNP: SS_974711596 dbSNP: SS_974711597 dbSNP: SS_974711598 dbSNP: SS_974711599 dbSNP: SS_974711600 dbSNP: SS_974711601 dbSNP: SS_974711602 dbSNP: SS_974711603 dbSNP: SS_974711604 dbSNP: SS_974711605 dbSNP: SS_974711606 dbSNP: SS_974711607 dbSNP: SS_974711608 dbSNP: SS_974711609 dbSNP: SS_974711610 dbSNP: SS_974711611 dbSNP: SS_974711612 dbSNP: SS_974711613 dbSNP: SS_974711614 dbSNP: SS_974711615 dbSNP: SS_974711616 dbSNP: SS_974711617 dbSNP: SS_974711618 dbSNP: SS_974711619 dbSNP: SS_974711620 dbSNP: SS_974711621 dbSNP: SS_974711622 dbSNP: SS_974711623 dbSNP: SS_974711624 dbSNP: SS_974711625 dbSNP: SS_974711626 dbSNP: SS_974711627 dbSNP: SS_974711628 dbSNP: SS_974711629 dbSNP: SS_974711630 dbSNP: SS_974711631 dbSNP: SS_974711632 dbSNP: SS_974711633 dbSNP: SS_974711634 dbSNP: SS_974711635 dbSNP: SS_974711636 dbSNP: SS_974711637 dbSNP: SS_974711638 dbSNP: SS_974711639 dbSNP: SS_974711640 dbSNP: SS_974711641 dbSNP: SS_974711642 dbSNP: SS_974711643 dbSNP: SS_974711644 dbSNP: SS_974711645 dbSNP: SS_974711646 dbSNP: SS_974711647 dbSNP: SS_974711648 dbSNP: SS_974711649 dbSNP: SS_974711650 dbSNP: SS_974711651 dbSNP: SS_974711652 dbSNP: SS_974711653 dbSNP: SS_974711654 dbSNP: SS_974711655 dbSNP: SS_974711656 dbSNP: SS_974711657 dbSNP: SS_974711658 dbSNP: SS_974711659 dbSNP: SS_974711660 dbSNP: SS_974711661 dbSNP: SS_974711662 dbSNP: SS_974711663 dbSNP: SS_974711664 dbSNP: SS_974711665 dbSNP: SS_974711666 dbSNP: SS_974711667 dbSNP: SS_974711668 dbSNP: SS_974711669 dbSNP: SS_974711670 dbSNP: SS_974711671 dbSNP: SS_974711672 dbSNP: SS_974711673 dbSNP: SS_974711674 dbSNP: SS_974711675 dbSNP: SS_974711676 dbSNP: SS_974711677 dbSNP: SS_974711678 dbSNP: SS_974711679 dbSNP: SS_974711680 dbSNP: SS_974711681 dbSNP: SS_974711682 dbSNP: SS_974711683 dbSNP: SS_974711684 dbSNP: SS_974711685 dbSNP: SS_974711686 dbSNP: SS_974711687 dbSNP: SS_974711688 dbSNP: SS_974711689 dbSNP: SS_974711690 dbSNP: SS_974711691 dbSNP: SS_974711692 dbSNP: SS_974711693 dbSNP: SS_974711694 dbSNP: SS_974711695 dbSNP: SS_974711696 dbSNP: SS_974711697 dbSNP: SS_974711698 dbSNP: SS_974711699 dbSNP: SS_974711700 dbSNP: SS_974711701 dbSNP: SS_974711702 dbSNP: SS_974711703 dbSNP: SS_974711704 dbSNP: SS_974711705 dbSNP: SS_974711706 dbSNP: SS_974711707 dbSNP: SS_974711708 dbSNP: SS_974711709 dbSNP: SS_974711710 dbSNP: SS_974711711 dbSNP: SS_974711712 dbSNP: SS_974711713 dbSNP: SS_974711714 dbSNP: SS_974711715 dbSNP: SS_974711716 dbSNP: SS_974711717 dbSNP: SS_974711718 dbSNP: SS_974711719 dbSNP: SS_974711720 dbSNP: SS_974711721 dbSNP: SS_974711722 dbSNP: SS_974711723 dbSNP: SS_974711724 dbSNP: SS_974711725 dbSNP: SS_974711726 dbSNP: SS_974711727 dbSNP: SS_974711728 dbSNP: SS_974711729 dbSNP: SS_974711730 dbSNP: SS_974711731 dbSNP: SS_974711732 dbSNP: SS_974711733 dbSNP: SS_974711734 dbSNP: SS_974711735 dbSNP: SS_974711736 dbSNP: SS_974711737 dbSNP: SS_974711738 dbSNP: SS_974711739 dbSNP: SS_974711740 dbSNP: SS_974711741 dbSNP: SS_974711742 dbSNP: SS_974711743 dbSNP: SS_974711744 dbSNP: SS_974711745 dbSNP: SS_974711746 dbSNP: SS_974711747 dbSNP: SS_974711748 dbSNP: SS_974711749 dbSNP: SS_974711750 dbSNP: SS_974711751 dbSNP: SS_974711752 dbSNP: SS_974711753 dbSNP: SS_974711754 dbSNP: SS_974711755 dbSNP: SS_974711756 dbSNP: SS_974711757 dbSNP: SS_974711758 dbSNP: SS_974711759 dbSNP: SS_974711760 dbSNP: SS_974711761 dbSNP: SS_974711762 dbSNP: SS_974711763 dbSNP: SS_974711764 dbSNP: SS_974711765 dbSNP: SS_974711766 dbSNP: SS_974711767 dbSNP: SS_974711768 dbSNP: SS_974711769 dbSNP: SS_974711770 dbSNP: SS_974711771
Mol Ecol Resour 14 (6) 1248-1260 [2014-11-00; online 2014-05-03]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Human isolates of Listeria monocytogenes in Sweden during half a century (1958-2010).
Lopez-Valladares G, Tham W, Parihar VS, ..., Henriques-Normark B, Danielsson-Tham ML
pii: S0950268813003385
Epidemiol. Infect. 142 (11) 2251-2260 [2014-11-00; online 2014-02-01]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
Cesarean delivery and hematopoietic stem cell epigenetics in the newborn infant: implications for future health?
Almgren M, Schlinzig T, Gomez-Cabrero D, ..., Norman M, Ekström TJ
pii: S0002-9378(14)00465-7
Am. J. Obstet. Gynecol. 211 (5) 502.e1-502.e8 [2014-11-00; online 2014-07-06]
Bioinformatics and Expression Analysis (BEA)
Replicability and robustness of genome-wide-association studies for behavioral traits.
Rietveld CA, Conley D, Eriksson N, ..., Koellinger PD, Social Science Genetics Association Consortium
pii: 0956797614545132 pmc: PMC4375246 mid: NIHMS611855
Psychol Sci 25 (11) 1975-1986 [2014-11-00; online 2014-10-06]
NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
Photocatalysis induces bioactivity of an organic polymer based material
Cai Y, Strømme M, Zhang P, Engqvist H, Welch K
RSC Adv. 4 (101) 57715-57723 [2014-10-28; online 2014-10-28]
BioMaterial Interactions (BioMat)
Identification of 33 candidate oncogenes by screening for base-specific mutations.
Tuupanen S, Hänninen UA, Kondelin J, ..., Pitkänen E, Aaltonen LA
pii: bjc2014429 pmc: PMC4200084
Br. J. Cancer 111 (8) 1657-1662 [2014-10-14; online 2014-08-15]
Karolinska High Throughput Center (KHTC)
NPSR1 polymorphisms influence recurrent abdominal pain in children: a population-based study.
Henström M, Zucchelli M, Söderhäll C, ..., Olén O, D'Amato M
Neurogastroenterol. Motil. 26 (10) 1417-1425 [2014-10-00; online 2014-08-06]
Mutation Analysis Facility (MAF)
Glial origin of mesenchymal stem cells in a tooth model system.
Kaukua N, Shahidi MK, Konstantinidou C, ..., Fried K, Adameyko I
pii: nature13536
Nature 513 (7519) 551-554 [2014-09-25; online 2014-08-01]
Advanced Light Microscopy (ALM) [Collaborative]
Oncoprotein stabilization in brain tumors.
Hede SM, Savov V, Weishaupt H, Sangfelt O, Swartling FJ
pii: onc2013445
Oncogene 33 (39) 4709-4721 [2014-09-25; online 2013-10-30]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
Histidine-rich glycoprotein uptake and turnover is mediated by mononuclear phagocytes.
Tugues S, Roche F, Noguer O, ..., Tolmachev V, Claesson-Welsh L
pii: PONE-D-14-06030 pmc: PMC4171488
PLoS ONE 9 (9) e107483 [2014-09-22; online 2014-09-22]
Tissue Profiling
Characterization of stem-like cells in mucoepidermoid tracheal paediatric tumor.
Lim ML, Ooi BN, Jungebluth P, ..., Ahrlund-Richter L, Macchiarini P
pii: PONE-D-14-08076 pmc: PMC4167860
PLoS ONE 9 (9) e107712 [2014-09-17; online 2014-09-17]
Bioinformatics and Expression Analysis (BEA)
Genome-wide analysis reveals DNA methylation markers that vary with both age and obesity.
Almén MS, Nilsson EK, Jacobsson JA, ..., Fredriksson R, Schiöth HB
pii: S0378-1119(14)00772-0
Gene 548 (1) 61-67 [2014-09-10; online 2014-07-11]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
The prognostic value and therapeutic target role of stathmin-1 in urinary bladder cancer.
Hemdan T, Lindén M, Lind SB, ..., Malmström PU, Segersten U
pii: bjc2014427 pmc: PMC4453855
Br. J. Cancer 111 (6) 1180-1187 [2014-09-09; online 2014-07-29]
Tissue Profiling [Collaborative]
An integrative analysis of the tumorigenic role of TAZ in human non-small cell lung cancer.
Noguchi S, Saito A, Horie M, ..., Micke P, Nagase T
pii: 1078-0432.CCR-13-3328
Clin. Cancer Res. 20 (17) 4660-4672 [2014-09-01; online 2014-06-22]
Tissue Profiling
Interactive effects of KIBRA and CLSTN2 polymorphisms on episodic memory in old-age unipolar depression.
Pantzar A, Laukka EJ, Atti AR, ..., Fratiglioni L, Bäckman L
pii: S0028-3932(14)00240-1
Neuropsychologia 62 (-) 137-142 [2014-09-00; online 2014-08-01]
Mutation Analysis Facility (MAF)
Sexual structures and recombination of the wheat rust fungus Puccinia striiformis on Berberis vulgaris.
Rodriguez-Algaba J, Walter S, Sørensen CK, Hovmøller MS, Justesen AF
pii: S1087-1845(14)00120-0
Fungal Genet. Biol. 70 (-) 77-85 [2014-09-00; online 2014-07-22]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
Hypomethylated pollen bypasses the interploidy hybridization barrier in Arabidopsis.
Schatlowski N, Wolff P, Santos-González J, ..., Tamaru H, Köhler C
pii: tpc.114.130120 pmc: PMC4213165
Plant Cell 26 (9) 3556-3568 [2014-09-00; online 2014-09-12]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Splicing in the human brain.
Zaghlool A, Ameur A, Cavelier L, Feuk L
pii: B978-0-12-801105-8.00005-9
Int. Rev. Neurobiol. 116 (-) 95-125 [2014-08-31; online 2014-08-31]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
Meta-analysis in more than 17,900 cases of ischemic stroke reveals a novel association at 12q24.12.
Kilarski LL, Achterberg S, Devan WJ, ..., Bevan S, GARNET Collaborative Research Group WTCCC2ASGCtMCatISGC
pii: WNL.0000000000000707 pmc: PMC4150131
Neurology 83 (8) 678-685 [2014-08-19; online 2014-07-16]
NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
Analysis of candidate genes for lineage-specific expression changes in humans and primates.
Lindskog C, Kuhlwilm M, Davierwala A, ..., Pääbo S, Pontén F
J. Proteome Res. 13 (8) 3596-3606 [2014-08-01; online 2014-06-10]
Tissue Profiling
The human carotid body releases acetylcholine, ATP and cytokines during hypoxia.
Kåhlin J, Mkrtchian S, Ebberyd A, ..., Fagerlund MJ, Eriksson LI
pii: expphysiol.2014.078873
Exp. Physiol. 99 (8) 1089-1098 [2014-08-00; online 2014-06-03]
Bioinformatics and Expression Analysis (BEA)
Influence of coronary artery disease-associated genetic variants on risk of venous thromboembolism.
Bruzelius M, Strawbridge RJ, Trégouët D, ..., Odeberg J, Hamsten A
pii: S0049-3848(14)00184-4
Thromb. Res. 134 (2) 426-432 [2014-08-00; online 2014-04-22]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Biological insights from 108 schizophrenia-associated genetic loci.
Schizophrenia Working Group of the Psychiatric Genomics Consortium
Nature 511 (7510) 421-427 [2014-07-24; online 2014-07-22]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Genome-wide profiling of AP-1-regulated transcription provides insights into the invasiveness of triple-negative breast cancer.
Zhao C, Qiao Y, Jonsson P, ..., Williams C, Dahlman-Wright K
pii: 0008-5472.CAN-13-3396
Cancer Res. 74 (14) 3983-3994 [2014-07-15; online 2014-05-17]
Bioinformatics and Expression Analysis (BEA)
Transcriptome analysis reveals signature of adaptation to landscape fragmentation.
Somervuo P, Kvist J, Ikonen S, ..., Ahola V, Hanski I
pii: PONE-D-14-13404 pmc: PMC4079591 GEO: GSE47692
PLoS ONE 9 (7) e101467 [2014-07-02; online 2014-07-02]
Karolinska High Throughput Center (KHTC)
Genetic variants in CDC42 and NXPH1 as susceptibility factors for constipation and diarrhoea predominant irritable bowel syndrome.
Wouters MM, Lambrechts D, Knapp M, ..., D'Amato M, Boeckxstaens G
pii: gutjnl-2013-304570
Gut 63 (7) 1103-1111 [2014-07-00; online 2013-09-18]
Mutation Analysis Facility (MAF)
Structural basis for PTPA interaction with the invariant C-terminal tail of PP2A.
Löw C, Quistgaard EM, Kovermann M, ..., Balbach J, Nordlund P
pii: /j/bchm.2014.395.issue-7-8/hsz-2014-0106/hsz-2014-0106.xml PDB: 4NY3
Biol. Chem. 395 (7-8) 881-889 [2014-07-00; online 2014-07-09]
Protein Science Facility (PSF)
Characterization of an experimental vaccine for bovine respiratory syncytial virus.
Hägglund S, Hu K, Blodörn K, ..., Valarcher JF, Eléouët JF
pii: CVI.00162-14 pmc: PMC4097437
Clin. Vaccine Immunol. 21 (7) 997-1004 [2014-07-00; online 2014-05-16]
Mass Spectrometry-based Proteomics, Uppsala
Affinity proteomics within rare diseases: a BIO-NMD study for blood biomarkers of muscular dystrophies.
Ayoglu B, Chaouch A, Lochmüller H, ..., Nilsson P, Al-Khalili Szigyarto C
pii: emmm.201303724 pmc: PMC4119355
EMBO Mol Med 6 (7) 918-936 [2014-07-00; online 2014-06-13]
Translational Plasma Profiling [Collaborative]
CXCR4 Antagonists
Castaldo C, Benicchi T, Otrocka M, ..., Varrone M, Porcari V
J Biomol Screen 19 (6) 859-869 [2014-07-00; online 2014-07-00]
Chemical Biology Consortium Sweden (CBCS) [Service]
MiR-146a negatively regulates TLR2-induced inflammatory responses in keratinocytes.
Meisgen F, Xu Landén N, Wang A, ..., Breton L, Pivarcsi A
pii: S0022-202X(15)36864-0
J. Invest. Dermatol. 134 (7) 1931-1940 [2014-07-00; online 2014-03-29]
Bioinformatics and Expression Analysis (BEA)
Tyrosine phosphorylation profiling via in situ proximity ligation assay.
Elfineh L, Classon C, Asplund A, ..., Kamali-Moghaddam M, Lind SB
pii: 1471-2407-14-435 pmc: PMC4072613
BMC Cancer 14 (-) 435 [2014-06-13; online 2014-06-13]
PLA and Single Cell Proteomics
Genetic associations to germinal centre formation in primary Sjogren's syndrome.
Reksten TR, Johnsen SJ, Jonsson MV, ..., Jonsson R, Nordmark G
pii: annrheumdis-2012-202500
Ann. Rheum. Dis. 73 (6) 1253-1258 [2014-06-00; online 2013-04-23]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Decreased decorin expression in the tumor microenvironment.
Bozoky B, Savchenko A, Guven H, ..., Klein G, Szekely L
Cancer Med 3 (3) 485-491 [2014-06-00; online 2014-03-19]
Tissue Profiling
Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins.
Edfors F, Boström T, Forsström B, ..., Mann M, Uhlen M
pii: M113.034140 pmc: PMC4047479
Mol. Cell Proteomics 13 (6) 1611-1624 [2014-06-00; online 2014-04-12]
Cell Profiling
Nucleosome regulatory dynamics in response to TGFβ.
Enroth S, Andersson R, Bysani M, ..., Komorowski J, Wadelius C
pii: gku326 pmc: PMC4066760
Nucleic Acids Res. 42 (11) 6921-6934 [2014-06-00; online 2014-04-29]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
Garbage in, garbage out: a critical evaluation of strategies used for validation of immunohistochemical biomarkers.
O'Hurley G, Sjöstedt E, Rahman A, ..., Gallagher WM, Lindskog C
pii: S1574-7891(14)00056-8
Mol Oncol 8 (4) 783-798 [2014-06-00; online 2014-04-15]
Tissue Profiling
Genomic diversity and admixture differs for Stone-Age Scandinavian foragers and farmers.
Skoglund P, Malmström H, Omrak A, ..., Götherström A, Jakobsson M
pii: science.1253448
Science 344 (6185) 747-750 [2014-05-16; online 2014-04-26]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Structure and inhibition of mouse leukotriene C4 synthase.
Niegowski D, Kleinschmidt T, Ahmad S, ..., Rinaldo-Matthis A, Haeggström JZ
pii: PONE-D-14-10371 pmc: PMC4014545
PLoS ONE 9 (5) e96763 [2014-05-08; online 2014-05-08]
Chemical Biology Consortium Sweden (CBCS) [Service] Protein Science Facility (PSF)
Responsibility and cooperativeness are constrained, not determined.
Garcia D, Stråge A, Lundström S, ..., Kerekes N, Anckarsäter H
Front Psychol 5 (-) 308 [2014-05-07; online 2014-05-07]
Mutation Analysis Facility (MAF)
Quality control and conduct of genome-wide association meta-analyses.
Winkler TW, Day FR, Croteau-Chonka DC, ..., Loos RJ, Genetic Investigation of Anthropometric Traits (GIANT) Consortium
pii: nprot.2014.071 pmc: PMC4083217 mid: EMS59293
Nat Protoc 9 (5) 1192-1212 [2014-05-00; online 2014-04-24]
NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
A new look at adenovirus splicing.
Zhao H, Chen M, Pettersson U
pii: S0042-6822(14)00129-9
Virology 456-457 (-) 329-341 [2014-05-00; online 2014-04-25]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Protein biomarker validation via proximity ligation assays.
Blokzijl A, Nong R, Darmanis S, ..., Landegren U, Kamali-Moghaddam M
pii: S1570-9639(13)00288-4
Biochim. Biophys. Acta 1844 (5) 933-939 [2014-05-00; online 2013-08-13]
PLA and Single Cell Proteomics
High-throughput transcription profiling identifies putative epigenetic regulators of hematopoiesis.
Prasad P, Rönnerblad M, Arner E, ..., Ekwall K, FANTOM consortium
pii: blood-2013-02-483537
Blood 123 (17) e46-e57 [2014-04-24; online 2014-03-29]
Bioinformatics and Expression Analysis (BEA)
Clinical and genetic features of pediatric acute lymphoblastic leukemia in Down syndrome in the Nordic countries.
Lundin C, Forestier E, Klarskov Andersen M, ..., Swedish Cytogenetic Leukemia Study Group (SCLSG) , NOPHO Leukemia Cytogenetic Study Group (NLCSG)
pii: 1756-8722-7-32 pmc: PMC4022076
J Hematol Oncol 7 (-) 32 [2014-04-11; online 2014-04-11]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
Vulnerability of glioblastoma cells to catastrophic vacuolization and death induced by a small molecule.
Kitambi SS, Toledo EM, Usoskin D, ..., Hammarström LGJ, Ernfors P
pii: S0092-8674(14)00220-7
Cell 157 (2) 313-328 [2014-04-10; online 2014-03-25]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
WNT5A-mediated β-catenin-independent signalling is a novel regulator of cancer cell metabolism.
Sherwood V, Chaurasiya SK, Ekström EJ, ..., James P, Andersson T
pii: bgt390 pmc: PMC3977146
Carcinogenesis 35 (4) 784-794 [2014-04-00; online 2013-12-03]
Tissue Profiling
Investigation of molecular alterations of AKT-3 in triple-negative breast cancer.
O'Hurley G, Daly E, O'Grady A, ..., Kay EW, Gallagher WM
Histopathology 64 (5) 660-670 [2014-04-00; online 2013-10-22]
Tissue Profiling
A central role for GRB10 in regulation of islet function in man.
Prokopenko I, Poon W, Mägi R, ..., Groop L, Lyssenko V
pii: PGENETICS-D-13-01536 pmc: PMC3974640
PLoS Genet. 10 (4) e1004235 [2014-04-00; online 2014-04-03]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Affinity proteomics reveals elevated muscle proteins in plasma of children with cerebral malaria.
Bachmann J, Burté F, Pramana S, ..., Fernandez-Reyes D, Nilsson P
pii: PPATHOGENS-D-13-01973 pmc: PMC3990714
PLoS Pathog. 10 (4) e1004038 [2014-04-00; online 2014-04-17]
Translational Plasma Profiling [Collaborative]
The novel diagnostic biomarkers for focal segmental glomerulosclerosis.
Nafar M, Kalantari S, Samavat S, ..., Rutishuser D, Zubarev RA
Int J Nephrol 2014 (-) 574261 [2014-03-26; online 2014-03-26]
Advanced Mass Spectrometry Proteomics
Epitope-specific antibody response is controlled by immunoglobulin V(H) polymorphisms.
Raposo B, Dobritzsch D, Ge C, ..., Schneider G, Holmdahl R
pii: jem.20130968 pmc: PMC3949579
J. Exp. Med. 211 (3) 405-411 [2014-03-10; online 2014-02-19]
Protein Science Facility (PSF)
A chromosome-centric analysis of antibodies directed toward the human proteome using Antibodypedia.
Alm T, von Feilitzen K, Lundberg E, Sivertsson Å, Uhlén M
J. Proteome Res. 13 (3) 1669-1676 [2014-03-07; online 2014-02-19]
Cell Profiling
ZapE is a novel cell division protein interacting with FtsZ and modulating the Z-ring dynamics.
Marteyn BS, Karimova G, Fenton AK, ..., Sansonetti PJ, Tang CM
pii: mBio.00022-14 pmc: PMC3958796
MBio 5 (2) e00022-e00014 [2014-03-04; online 2014-03-04]
Protein Science Facility (PSF)
Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) Consortium , Asian Genetic Epidemiology Network Type 2 Diabetes (AGEN-T2D) Consortium , South Asian Type 2 Diabetes (SAT2D) Consortium , ..., McCarthy MI, Morris AP
Nat. Genet. 46 (3) 234-244 [2014-03-00; online 2014-02-11]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Antibody performance in western blot applications is context-dependent.
Algenäs C, Agaton C, Fagerberg L, ..., Ottosson Takanen J, Hober S
Biotechnol J 9 (3) 435-445 [2014-03-00; online 2014-01-10]
Cell Profiling Tissue Profiling
Robust isolation of malignant plasma cells in multiple myeloma.
Frigyesi I, Adolfsson J, Ali M, ..., Hansson M, Nilsson B
pii: blood-2013-09-529800
Blood 123 (9) 1336-1340 [2014-02-27; online 2014-01-05]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
Structural and functional insights into peptidoglycan access for the lytic amidase LytA of Streptococcus pneumoniae.
Mellroth P, Sandalova T, Kikhney A, ..., Henriques-Normark B, Achour A
pii: mBio.01120-13 pmc: PMC3950521
MBio 5 (1) e01120-e01113 [2014-02-11; online 2014-02-11]
Protein Science Facility (PSF)
Prognostic polypeptide blood plasma biomarkers of Alzheimer's disease progression.
Yang H, Lyutvinskiy Y, Herukka SK, ..., Rutishauser D, Zubarev RA
pii: B57787151JW2710L
J. Alzheimers Dis. 40 (3) 659-666 [2014-02-08; online 2014-02-08]
Advanced Mass Spectrometry Proteomics
Subtyping of gliomas of various WHO grades by the application of immunohistochemistry.
Popova SN, Bergqvist M, Dimberg A, ..., Sooman L, Alafuzoff I
Histopathology 64 (3) 365-379 [2014-02-00; online 2014-01-15]
Tissue Profiling
Glioma-derived macrophage migration inhibitory factor (MIF) promotes mast cell recruitment in a STAT5-dependent manner.
Põlajeva J, Bergström T, Edqvist PH, ..., Forsberg Nilsson K, Tchougounova E
pii: S1574-7891(13)00137-3
Mol Oncol 8 (1) 50-58 [2014-02-00; online 2013-10-05]
Tissue Profiling
Product formation controlled by substrate dynamics in leukotriene A4 hydrolase.
Stsiapanava A, Tholander F, Kumar RB, ..., Haeggström JZ, Rinaldo-Matthis A
pii: S1570-9639(13)00425-1
Biochim. Biophys. Acta 1844 (2) 439-446 [2014-02-00; online 2013-12-18]
Protein Science Facility (PSF)
Aspirin degradation in surface-charged TEMPO-oxidized mesoporous crystalline nanocellulose.
Carlsson DO, Hua K, Forsgren J, Mihranyan A
pii: S0378-5173(13)01026-0
Int J Pharm 461 (1-2) 74-81 [2014-01-30; online 2013-12-03]
BioMaterial Interactions (BioMat)
FuseFISH: robust detection of transcribed gene fusions in single cells.
Semrau S, Crosetto N, Bienko M, ..., Chiarle R, van Oudenaarden A
pii: S2211-1247(13)00732-8 pmc: PMC4214547 mid: NIHMS547000
Cell Rep 6 (1) 18-23 [2014-01-16; online 2013-12-27]
Advanced FISH Technologies [Technology development]
Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease.
Mardinoglu A, Agren R, Kampf C, ..., Uhlen M, Nielsen J
pii: ncomms4083
Nat Commun 5 (-) 3083 [2014-01-15; online 2014-01-15]
Tissue Profiling
Draft Genome Sequence of Saccharopolyspora rectivirgula.
Pettersson BM, Behra PR, Manduva S, ..., Bhattacharya A, Kirsebom LA
pii: 2/1/e01117-13 pmc: PMC3886947
Genome Announc 2 (1) - [2014-01-09; online 2014-01-09]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
Dominant mutations in GRHL3 cause Van der Woude Syndrome and disrupt oral periderm development.
Peyrard-Janvid M, Leslie EJ, Kousa YA, ..., Kere J, Schutte BC
pii: S0002-9297(13)00524-7 pmc: PMC3882735
Am. J. Hum. Genet. 94 (1) 23-32 [2014-01-02; online 2013-12-24]
Mutation Analysis Facility (MAF)
A systematic analysis of commonly used antibodies in cancer diagnostics.
Gremel G, Bergman J, Djureinovic D, ..., Micke P, Pontén F
Histopathology 64 (2) 293-305 [2014-01-00; online 2013-12-18]
Tissue Profiling
A population-based assessment of germline HOXB13 G84E mutation and prostate cancer risk.
Karlsson R, Aly M, Clements M, ..., Grönberg H, Wiklund F
pii: S0302-2838(12)00832-9
Eur. Urol. 65 (1) 169-176 [2014-01-00; online 2012-07-31]
Mutation Analysis Facility (MAF)
SNPs within the GH-signaling pathway are associated with the early IGF1 response to GH replacement therapy in GHD adults.
Glad CA, Barbosa EJ, Filipsson Nyström H, ..., Svensson PA, Johannsson G
pii: EJE-13-0685
Eur. J. Endocrinol. 170 (1) 101-107 [2014-01-00; online 2013-10-12]
Mutation Analysis Facility (MAF)
Translational study between structure and biological response of nanocellulose from wood and green algae
Hua K, Carlsson DO, Ålander E, ..., Mihranyan A, Ferraz N
RSC Adv. 4 (6) 2892-2903 [2014-00-00; online 2014-00-00]
BioMaterial Interactions (BioMat)